1 | #-Q- curie ###################### |
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2 | #-Q- curie ## CURIE TGCC/CEA ## |
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3 | #-Q- curie ###################### |
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4 | #-Q- curie #MSUB -r METRICS_ORCHIDEE # Nom du job |
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5 | #-Q- curie #MSUB -o METRICS_ORCHIDEE.out_%I |
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6 | #-Q- curie #MSUB -e METRICS_ORCHIDEE.out_%I |
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7 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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8 | #-Q- curie #MSUB -T 14400 # Limite de temps elapsed du job |
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9 | #-Q- curie #MSUB -q ::default_node:: |
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10 | #-Q- curie #MSUB -Q normal |
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11 | #-Q- curie #MSUB -c ::default_core:: |
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12 | #-Q- curie #MSUB -A ::default_project:: |
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13 | #-Q- curie set +x |
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14 | #-Q- irene ###################### |
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15 | #-Q- irene ## IRENE TGCC/CEA ## |
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16 | #-Q- irene ###################### |
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17 | #-Q- irene #MSUB -r METRICS_ORCHIDEE # Job name |
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18 | #-Q- irene #MSUB -o METRICS_ORCHIDEE.out_%I |
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19 | #-Q- irene #MSUB -e METRICS_ORCHIDEE.out_%I |
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20 | #-Q- irene #MSUB -n 1 |
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21 | #-Q- irene #MSUB -T 14400 # Maximum elapsed time |
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22 | #-Q- irene #MSUB -q ::default_node:: |
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23 | #-Q- irene #MSUB -c ::default_core:: |
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24 | #-Q- irene #MSUB -Q normal |
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25 | #-Q- irene #MSUB -A ::default_post_project:: |
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26 | #-Q- irene #MSUB -m store,work,scratch |
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27 | #-Q- irene set +x |
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28 | #-Q- ada #!/bin/ksh |
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29 | #-Q- ada ####################### |
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30 | #-Q- ada ## ADA IDRIS ## |
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31 | #-Q- ada ####################### |
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32 | #-Q- ada # @ job_type = mpich |
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33 | #-Q- ada # @ requirements = (Feature == "prepost") |
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34 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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35 | #-Q- ada # @ wall_clock_limit = 4:00:00 |
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36 | #-Q- ada # Nom du travail LoadLeveler |
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37 | #-Q- ada # @ job_name = METRICS_ORCHIDEE |
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38 | #-Q- ada # Fichier de sortie standard du travail |
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39 | #-Q- ada # @ output = $(job_name).$(jobid) |
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40 | #-Q- ada # Fichier de sortie d'erreur du travail |
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41 | #-Q- ada # @ error = $(job_name).$(jobid) |
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42 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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43 | #-Q- ada # @ notification = error |
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44 | #-Q- ada # @ environment = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit) |
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45 | #-Q- ada # @ queue |
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46 | #-Q- lxiv8 ###################### |
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47 | #-Q- lxiv8 ## OBELIX LSCE ## |
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48 | #-Q- lxiv8 ###################### |
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49 | #-Q- lxiv8 #PBS -N METRICS_ORCHIDEE |
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50 | #-Q- lxiv8 #PBS -m a |
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51 | #-Q- lxiv8 #PBS -j oe |
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52 | #-Q- lxiv8 #PBS -q test |
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53 | #-Q- lxiv8 #PBS -o METRICS_ORCHIDEE.$$ |
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54 | #-Q- lxiv8 #PBS -S /bin/ksh |
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55 | #-Q- ifort_CICLAD ###################### |
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56 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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57 | #-Q- ifort_CICLAD ###################### |
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58 | #-Q- ifort_CICLAD #PBS -N METRICS_ORCHIDEE |
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59 | #-Q- ifort_CICLAD #PBS -m a |
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60 | #-Q- ifort_CICLAD #PBS -j oe |
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61 | #-Q- ifort_CICLAD #PBS -q std |
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62 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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63 | #-Q- default #!/bin/ksh |
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64 | #-Q- default ################## |
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65 | #-Q- default ## DEFAULT HOST ## |
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66 | #-Q- default ################## |
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67 | |
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68 | #************************************************************** |
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69 | # Author: Sebastien Denvil |
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70 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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71 | # $Revision:: $ Revision of last commit |
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72 | # $Author:: $ Author of last commit |
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73 | # $Date:: $ Date of last commit |
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74 | # IPSL (2006) |
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75 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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76 | # |
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77 | #************************************************************** |
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78 | |
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79 | #set -eu |
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80 | #set -vx |
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81 | |
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82 | date |
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83 | |
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84 | #-Q- ada export OMP_NUM_THREADS=1 |
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85 | |
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86 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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87 | TaskType=post-processing |
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88 | |
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89 | ###################################################################### |
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90 | |
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91 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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92 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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93 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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94 | #------- |
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95 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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96 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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97 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
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98 | #------- |
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99 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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100 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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101 | #------- |
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102 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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103 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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104 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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105 | |
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106 | ###################################################################### |
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107 | |
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108 | #set -vx |
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109 | |
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110 | # ------------------------------------------------------------------ |
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111 | # Test if all was right before proceeding further |
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112 | # ------------------------------------------------------------------ |
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113 | IGCM_debug_Verif_Exit |
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114 | |
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115 | if [ ${StandAlone} = true ] ; then |
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116 | CARD_DIR=${SUBMIT_DIR} |
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117 | else |
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118 | CARD_DIR=${RUN_DIR_PATH} |
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119 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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120 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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121 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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122 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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123 | fi |
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124 | |
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125 | #================================== |
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126 | # First of all |
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127 | # |
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128 | # Read libIGCM compatibility version in config.card |
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129 | # Read UserChoices section |
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130 | # Read Ensemble section |
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131 | # Read Post section |
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132 | # Define all netcdf output directories |
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133 | #================================== |
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134 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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135 | |
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136 | # ------------------------------------------------------------------ |
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137 | # Activate BigBrother so as to supervise this job |
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138 | # ------------------------------------------------------------------ |
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139 | IGCM_debug_BigBro_Initialize |
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140 | |
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141 | #================================== |
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142 | # Then set up several directories |
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143 | #================================== |
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144 | R_OUT_SRF=${R_SAVE}/SRF |
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145 | DIR_OUT=${DIR_OUT:=SE} |
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146 | RUN_DIR=${RUN_DIR_PATH} |
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147 | IGCM_sys_MkdirArchive ${R_FIGR} |
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148 | IGCM_sys_MkdirWork ${RUN_DIR} |
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149 | IGCM_sys_Cd ${RUN_DIR} |
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150 | IGCM_sys_MkdirWork METRICS/SE_${YEARS} |
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151 | |
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152 | #================================== |
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153 | # Get the file |
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154 | #================================== |
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155 | IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR} |
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156 | |
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157 | #================================== |
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158 | # Get the fileCompute gpptot |
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159 | #================================== |
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160 | IGCM_sys_ncap2 -s 'gpptot = gpp.total($veget)/1000' ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc tmpout.nc |
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161 | IGCM_sys_ncatted -O -a units,gpptot,o,c,"kg m-2 s-1" tmpout.nc |
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162 | IGCM_sys_Mv tmpout.nc ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc |
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163 | |
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164 | #================================== |
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165 | # Group of metrics we will compute |
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166 | #================================== |
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167 | GroupsOfMetrics='ORCHIDEE_PCMDI' |
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168 | MP_Version=v3 |
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169 | |
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170 | #================================== |
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171 | # SET UP THE PATH (wont be done in libIGCM_sys because setup_runtime.sh is way too intrusive) |
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172 | #================================== |
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173 | . ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/setup_runtime.sh |
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174 | |
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175 | for metricsGroupName in ${GroupsOfMetrics} ; do |
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176 | |
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177 | #================================== |
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178 | # Appropriate configuration template |
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179 | #================================== |
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180 | IGCM_sys_Cp ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/doc/parameter_files/input_parameters_${metricsGroupName}_template.py template.py |
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181 | |
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182 | #================================== |
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183 | # Configure template for histmth.nc |
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184 | #================================== |
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185 | IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc\' |
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186 | IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc\' |
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187 | IGCM_comp_modifyFile template.py attributes_provided \'IPSL_Extended\' |
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188 | IGCM_comp_modifyFile template.py Login \'${LOGIN}\' |
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189 | IGCM_comp_modifyFile template.py model_versions \[\'${config_UserChoices_TagName}\'\] |
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190 | IGCM_comp_modifyFile template.py experiment \'${config_UserChoices_ExperimentName}\' |
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191 | IGCM_comp_modifyFile template.py realization \'${config_UserChoices_JobName}\' |
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192 | IGCM_comp_modifyFile template.py project_id \'IPSL\-${config_UserChoices_SpaceName}\' |
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193 | IGCM_comp_modifyFile template.py ModelFreeSpace "\"${config_UserChoices_LongName}\"" |
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194 | IGCM_comp_modifyFile template.py case_id \'${metricsGroupName}\' |
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195 | IGCM_comp_modifyFile template.py obs_data_path \'${R_IN}/ReferenceDatasets/climatos\' |
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196 | IGCM_comp_modifyFile template.py metrics_output_path \'${RUN_DIR}/METRICS/SE_${YEARS}\' |
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197 | IGCM_comp_modifyFile template.py model_clims_interpolated_output \'${RUN_DIR}\' |
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198 | |
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199 | #================================== |
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200 | # Compute metrics |
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201 | #================================== |
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202 | python ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/pcmdi_metrics_driver.py -p template.py |
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203 | |
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204 | #================================== |
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205 | # Export metrics to mongoDB system |
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206 | #================================== |
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207 | IGCM_debug_sendAMQP_Metrics METRICS/SE_${YEARS}/${metricsGroupName} ${metricsGroupName} |
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208 | |
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209 | done |
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210 | |
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211 | #================================== |
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212 | # Save files |
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213 | #================================== |
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214 | IGCM_sys_Put_Dir METRICS ${R_FIGR} |
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215 | IGCM_sys_Rm -Rf METRICS |
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216 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc |
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217 | |
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218 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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219 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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220 | |
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221 | # ------------------------------------------------------------------ |
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222 | # Finalize BigBrother to inform that the jobs end |
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223 | # ------------------------------------------------------------------ |
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224 | IGCM_debug_BigBro_Finalize |
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