[1227] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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| 4 | #-Q- curie #MSUB -r METRICS_ORCHIDEE # Nom du job |
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[1468] | 5 | #-Q- curie #MSUB -o METRICS_ORCHIDEE.out_%I |
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| 6 | #-Q- curie #MSUB -e METRICS_ORCHIDEE.out_%I |
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[1227] | 7 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 8 | #-Q- curie #MSUB -T 14400 # Limite de temps elapsed du job |
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| 9 | #-Q- curie #MSUB -q ::default_node:: |
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| 10 | #-Q- curie #MSUB -Q normal |
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[1274] | 11 | #-Q- curie #MSUB -c ::default_core:: |
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[1227] | 12 | #-Q- curie #MSUB -A ::default_project:: |
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| 13 | #-Q- curie set +x |
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[1437] | 14 | #-Q- irene ###################### |
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| 15 | #-Q- irene ## IRENE TGCC/CEA ## |
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| 16 | #-Q- irene ###################### |
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| 17 | #-Q- irene #MSUB -r METRICS_ORCHIDEE # Job name |
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[1468] | 18 | #-Q- irene #MSUB -o METRICS_ORCHIDEE.out_%I |
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| 19 | #-Q- irene #MSUB -e METRICS_ORCHIDEE.out_%I |
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[1437] | 20 | #-Q- irene #MSUB -n 1 |
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[1468] | 21 | #-Q- irene #MSUB -T 14400 # Maximum elapsed time |
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| 22 | #-Q- irene #MSUB -q ::default_node:: |
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| 23 | #-Q- irene #MSUB -c ::default_core:: |
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[1437] | 24 | #-Q- irene #MSUB -Q normal |
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[1468] | 25 | #-Q- irene #MSUB -A ::default_post_project:: |
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[1460] | 26 | #-Q- irene #MSUB -m store,work,scratch |
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[1437] | 27 | #-Q- irene set +x |
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[1525] | 28 | #-Q- irene-amd ###################### |
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| 29 | #-Q- irene-amd ## IRENE TGCC/CEA ## |
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| 30 | #-Q- irene-amd ###################### |
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| 31 | #-Q- irene-amd #MSUB -r METRICS_ORCHIDEE # Job name |
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| 32 | #-Q- irene-amd #MSUB -o METRICS_ORCHIDEE.out_%I |
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| 33 | #-Q- irene-amd #MSUB -e METRICS_ORCHIDEE.out_%I |
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| 34 | #-Q- irene-amd #MSUB -n 1 |
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| 35 | #-Q- irene-amd #MSUB -T 14400 # Maximum elapsed time |
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| 36 | #-Q- irene-amd #MSUB -q ::default_node:: |
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| 37 | #-Q- irene-amd #MSUB -c ::default_core:: |
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| 38 | #-Q- irene-amd #MSUB -Q normal |
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| 39 | #-Q- irene-amd #MSUB -A ::default_post_project:: |
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| 40 | #-Q- irene-amd #MSUB -m store,work,scratch |
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| 41 | #-Q- irene-amd set +x |
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[1227] | 42 | #-Q- ada #!/bin/ksh |
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| 43 | #-Q- ada ####################### |
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| 44 | #-Q- ada ## ADA IDRIS ## |
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| 45 | #-Q- ada ####################### |
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[1409] | 46 | #-Q- ada # @ job_type = mpich |
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[1227] | 47 | #-Q- ada # @ requirements = (Feature == "prepost") |
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| 48 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 49 | #-Q- ada # @ wall_clock_limit = 4:00:00 |
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| 50 | #-Q- ada # Nom du travail LoadLeveler |
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| 51 | #-Q- ada # @ job_name = METRICS_ORCHIDEE |
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| 52 | #-Q- ada # Fichier de sortie standard du travail |
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| 53 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 54 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 55 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 56 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 57 | #-Q- ada # @ notification = error |
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[1290] | 58 | #-Q- ada # @ environment = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit) |
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[1227] | 59 | #-Q- ada # @ queue |
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| 60 | #-Q- lxiv8 ###################### |
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| 61 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 62 | #-Q- lxiv8 ###################### |
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| 63 | #-Q- lxiv8 #PBS -N METRICS_ORCHIDEE |
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| 64 | #-Q- lxiv8 #PBS -m a |
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| 65 | #-Q- lxiv8 #PBS -j oe |
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| 66 | #-Q- lxiv8 #PBS -q test |
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| 67 | #-Q- lxiv8 #PBS -o METRICS_ORCHIDEE.$$ |
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| 68 | #-Q- lxiv8 #PBS -S /bin/ksh |
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| 69 | #-Q- ifort_CICLAD ###################### |
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| 70 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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| 71 | #-Q- ifort_CICLAD ###################### |
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| 72 | #-Q- ifort_CICLAD #PBS -N METRICS_ORCHIDEE |
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| 73 | #-Q- ifort_CICLAD #PBS -m a |
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| 74 | #-Q- ifort_CICLAD #PBS -j oe |
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| 75 | #-Q- ifort_CICLAD #PBS -q std |
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| 76 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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| 77 | #-Q- default #!/bin/ksh |
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| 78 | #-Q- default ################## |
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| 79 | #-Q- default ## DEFAULT HOST ## |
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| 80 | #-Q- default ################## |
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| 81 | |
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| 82 | #************************************************************** |
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| 83 | # Author: Sebastien Denvil |
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| 84 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 85 | # $Revision:: $ Revision of last commit |
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| 86 | # $Author:: $ Author of last commit |
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| 87 | # $Date:: $ Date of last commit |
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| 88 | # IPSL (2006) |
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| 89 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 90 | # |
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| 91 | #************************************************************** |
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| 92 | |
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| 93 | #set -eu |
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| 94 | #set -vx |
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| 95 | |
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| 96 | date |
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| 97 | |
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| 98 | #-Q- ada export OMP_NUM_THREADS=1 |
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| 99 | |
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[1356] | 100 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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[1227] | 101 | TaskType=post-processing |
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| 102 | |
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| 103 | ###################################################################### |
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| 104 | |
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| 105 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 106 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 107 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 108 | #------- |
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| 109 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 110 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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| 111 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
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| 112 | #------- |
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| 113 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 114 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 115 | #------- |
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| 116 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 117 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 118 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 119 | |
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| 120 | ###################################################################### |
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| 121 | |
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| 122 | #set -vx |
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| 123 | |
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| 124 | # ------------------------------------------------------------------ |
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| 125 | # Test if all was right before proceeding further |
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| 126 | # ------------------------------------------------------------------ |
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| 127 | IGCM_debug_Verif_Exit |
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| 128 | |
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| 129 | if [ ${StandAlone} = true ] ; then |
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| 130 | CARD_DIR=${SUBMIT_DIR} |
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| 131 | else |
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| 132 | CARD_DIR=${RUN_DIR_PATH} |
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| 133 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 134 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 135 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 136 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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| 137 | fi |
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| 138 | |
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| 139 | #================================== |
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| 140 | # First of all |
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| 141 | # |
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| 142 | # Read libIGCM compatibility version in config.card |
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| 143 | # Read UserChoices section |
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| 144 | # Read Ensemble section |
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| 145 | # Read Post section |
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| 146 | # Define all netcdf output directories |
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| 147 | #================================== |
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| 148 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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| 149 | |
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| 150 | # ------------------------------------------------------------------ |
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| 151 | # Activate BigBrother so as to supervise this job |
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| 152 | # ------------------------------------------------------------------ |
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| 153 | IGCM_debug_BigBro_Initialize |
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| 154 | |
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| 155 | #================================== |
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| 156 | # Then set up several directories |
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| 157 | #================================== |
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[1273] | 158 | R_OUT_SRF=${R_SAVE}/SRF |
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[1227] | 159 | DIR_OUT=${DIR_OUT:=SE} |
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| 160 | RUN_DIR=${RUN_DIR_PATH} |
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| 161 | IGCM_sys_MkdirArchive ${R_FIGR} |
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| 162 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 163 | IGCM_sys_Cd ${RUN_DIR} |
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| 164 | IGCM_sys_MkdirWork METRICS/SE_${YEARS} |
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| 165 | |
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| 166 | #================================== |
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| 167 | # Get the file |
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| 168 | #================================== |
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| 169 | IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR} |
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| 170 | |
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| 171 | #================================== |
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| 172 | # Get the fileCompute gpptot |
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| 173 | #================================== |
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| 174 | IGCM_sys_ncap2 -s 'gpptot = gpp.total($veget)/1000' ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc tmpout.nc |
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| 175 | IGCM_sys_ncatted -O -a units,gpptot,o,c,"kg m-2 s-1" tmpout.nc |
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| 176 | IGCM_sys_Mv tmpout.nc ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc |
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| 177 | |
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| 178 | #================================== |
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| 179 | # Group of metrics we will compute |
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| 180 | #================================== |
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| 181 | GroupsOfMetrics='ORCHIDEE_PCMDI' |
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[1308] | 182 | MP_Version=v3 |
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[1227] | 183 | |
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[1335] | 184 | #================================== |
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[1364] | 185 | # SET UP THE PATH (wont be done in libIGCM_sys because setup_runtime.sh is way too intrusive) |
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[1335] | 186 | #================================== |
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[1364] | 187 | . ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/setup_runtime.sh |
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[1335] | 188 | |
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[1227] | 189 | for metricsGroupName in ${GroupsOfMetrics} ; do |
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| 190 | |
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| 191 | #================================== |
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| 192 | # Appropriate configuration template |
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| 193 | #================================== |
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| 194 | IGCM_sys_Cp ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/doc/parameter_files/input_parameters_${metricsGroupName}_template.py template.py |
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| 195 | |
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| 196 | #================================== |
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| 197 | # Configure template for histmth.nc |
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| 198 | #================================== |
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| 199 | IGCM_comp_modifyFile template.py path_and_filename \'./${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc\' |
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| 200 | IGCM_comp_modifyFile template.py filename \'${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc\' |
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| 201 | IGCM_comp_modifyFile template.py attributes_provided \'IPSL_Extended\' |
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| 202 | IGCM_comp_modifyFile template.py Login \'${LOGIN}\' |
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| 203 | IGCM_comp_modifyFile template.py model_versions \[\'${config_UserChoices_TagName}\'\] |
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| 204 | IGCM_comp_modifyFile template.py experiment \'${config_UserChoices_ExperimentName}\' |
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| 205 | IGCM_comp_modifyFile template.py realization \'${config_UserChoices_JobName}\' |
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| 206 | IGCM_comp_modifyFile template.py project_id \'IPSL\-${config_UserChoices_SpaceName}\' |
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| 207 | IGCM_comp_modifyFile template.py ModelFreeSpace "\"${config_UserChoices_LongName}\"" |
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| 208 | IGCM_comp_modifyFile template.py case_id \'${metricsGroupName}\' |
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[1365] | 209 | IGCM_comp_modifyFile template.py obs_data_path \'${R_IN}/ReferenceDatasets/climatos\' |
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[1227] | 210 | IGCM_comp_modifyFile template.py metrics_output_path \'${RUN_DIR}/METRICS/SE_${YEARS}\' |
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| 211 | IGCM_comp_modifyFile template.py model_clims_interpolated_output \'${RUN_DIR}\' |
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| 212 | |
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| 213 | #================================== |
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| 214 | # Compute metrics |
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| 215 | #================================== |
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| 216 | python ${PCMDI_MP}/work_install_${MP_Version}/PCMDI_METRICS/bin/pcmdi_metrics_driver.py -p template.py |
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| 217 | |
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| 218 | #================================== |
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| 219 | # Export metrics to mongoDB system |
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| 220 | #================================== |
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| 221 | IGCM_debug_sendAMQP_Metrics METRICS/SE_${YEARS}/${metricsGroupName} ${metricsGroupName} |
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| 222 | |
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| 223 | done |
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| 224 | |
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| 225 | #================================== |
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| 226 | # Save files |
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| 227 | #================================== |
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| 228 | IGCM_sys_Put_Dir METRICS ${R_FIGR} |
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| 229 | IGCM_sys_Rm -Rf METRICS |
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| 230 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc |
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| 231 | |
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| 232 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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| 233 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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| 234 | |
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| 235 | # ------------------------------------------------------------------ |
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| 236 | # Finalize BigBrother to inform that the jobs end |
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| 237 | # ------------------------------------------------------------------ |
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| 238 | IGCM_debug_BigBro_Finalize |
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