[704] | 1 | #-Q- curie #!/bin/ksh |
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[619] | 2 | #-Q- curie ###################### |
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| 3 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 4 | #-Q- curie ###################### |
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[1030] | 5 | #-Q- curie #MSUB -r ::Jobname:: # Job Name |
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| 6 | #-Q- curie #MSUB -o Script_Output_::Jobname::.000001 # standard output |
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| 7 | #-Q- curie #MSUB -e Script_Output_::Jobname::.000001 # error output |
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[619] | 8 | #-Q- curie #MSUB -eo |
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[1149] | 9 | #-Q- curie #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case) |
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[1238] | 10 | #-Q- curie #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD |
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| 11 | #-Q- curie #MSUB -x # exclusive node. To specify only for MPMD together with the one below |
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| 12 | #-Q- curie #MSUB -E '--cpu_bind=none' |
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[1389] | 13 | #-Q- curie ##MSUB -E '--distribution cyclic' |
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[1030] | 14 | #-Q- curie #MSUB -T 86400 # Wall clock limit (seconds) |
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| 15 | #-Q- curie #MSUB -q standard # thin nodes |
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[1427] | 16 | #-Q- curie ##MSUB -U high |
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| 17 | #-Q- curie #MSUB -U medium |
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| 18 | #-Q- curie ##MSUB -U low |
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[837] | 19 | #-Q- curie #MSUB -A ::default_project:: |
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[1454] | 20 | #-Q- curie #MSUB -E --no-requeue |
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[1108] | 21 | #-Q- curie # Below specific options that can be activated |
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| 22 | #-Q- curie ##MSUB -q ivybridge # Option for Airain |
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| 23 | #-Q- curie |
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[619] | 24 | #-Q- curie BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC |
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[681] | 25 | #-Q- curie set +x |
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[1432] | 26 | #-Q- irene #!/bin/ksh |
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| 27 | #-Q- irene ###################### |
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| 28 | #-Q- irene ## IRENE TGCC/CEA ## |
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| 29 | #-Q- irene ###################### |
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| 30 | #-Q- irene #MSUB -r ::Jobname:: # Job Name |
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| 31 | #-Q- irene #MSUB -o Script_Output_::Jobname::.000001 # standard output |
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| 32 | #-Q- irene #MSUB -e Script_Output_::Jobname::.000001 # error output |
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| 33 | #-Q- irene #MSUB -eo |
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| 34 | #-Q- irene #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case) |
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| 35 | #-Q- irene #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD |
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| 36 | #-Q- irene #MSUB -x # exclusive node. To specify only for MPMD together with the one below |
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| 37 | #-Q- irene #MSUB -E '--cpu_bind=none' |
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| 38 | #-Q- irene #MSUB -T 86400 # Wall clock limit (seconds) |
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[1437] | 39 | #-Q- irene #MSUB -A ::default_project:: |
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[1432] | 40 | #-Q- irene #MSUB -q skylake |
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[1460] | 41 | #-Q- irene #MSUB -m store,work,scratch |
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[1432] | 42 | #-Q- irene |
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| 43 | #-Q- irene BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC |
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| 44 | #-Q- irene set +x |
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[1519] | 45 | #-Q- irene-amd #!/bin/ksh |
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| 46 | #-Q- irene-amd ###################### |
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| 47 | #-Q- irene-amd ## IRENE-AMD TGCC/CEA ## |
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| 48 | #-Q- irene-amd ###################### |
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| 49 | #-Q- irene-amd #MSUB -r ::Jobname:: # Job Name |
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| 50 | #-Q- irene-amd #MSUB -o Script_Output_::Jobname::.000001 # standard output |
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| 51 | #-Q- irene-amd #MSUB -e Script_Output_::Jobname::.000001 # error output |
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| 52 | #-Q- irene-amd #MSUB -eo |
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| 53 | #-Q- irene-amd #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case) |
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| 54 | #-Q- irene-amd #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD |
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| 55 | #-Q- irene-amd #MSUB -x # exclusive node. To specify only for MPMD together with the one below |
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| 56 | #-Q- irene-amd #MSUB -T 86400 # Wall clock limit (seconds) |
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| 57 | #-Q- irene-amd #MSUB -A ::default_project:: |
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| 58 | #-Q- irene-amd #MSUB -q rome |
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| 59 | #-Q- irene-amd #MSUB -m store,work,scratch |
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| 60 | #-Q- irene-amd |
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| 61 | #-Q- irene-amd BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC |
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| 62 | #-Q- irene-amd set +x |
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[1490] | 63 | #-Q- jeanzay #!/bin/ksh |
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| 64 | #-Q- jeanzay ###################### |
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| 65 | #-Q- jeanzay ## JEANZAY IDRIS ## |
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| 66 | #-Q- jeanzay ###################### |
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| 67 | #-Q- jeanzay #SBATCH --job-name=::Jobname:: # Job Name |
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| 68 | #-Q- jeanzay #SBATCH --output=Script_Output_::Jobname::.000001 # standard output |
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| 69 | #-Q- jeanzay #SBATCH --error=Script_Output_::Jobname::.000001 # error output |
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| 70 | #-Q- jeanzay #SBATCH --ntasks=::JobNumProcTot:: # Number of MPI tasks |
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| 71 | #-Q- jeanzay #SBATCH --cpus-per-task=::openMPthreads:: # Number of openMP threads. |
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[1509] | 72 | #-Q- jeanzay #SBATCH --hint=nomultithread # 1 processus MPI par par physical core (no hyperthreading) |
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[1490] | 73 | #-Q- jeanzay #SBATCH --time=00:30:00 # Wall clock limit (seconds) |
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| 74 | #-Q- jeanzay #SBATCH --account ::default_project::@cpu |
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| 75 | #-Q- jeanzay |
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| 76 | #-Q- jeanzay ##BATCH_NUM_PROC_TOT=$BRIDGE_SBATCH_NPROC |
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| 77 | #-Q- jeanzay set +x |
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[770] | 78 | #-Q- ada #!/bin/ksh |
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| 79 | #-Q- ada # ###################### |
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[929] | 80 | #-Q- ada # ## ADA IDRIS ## |
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[770] | 81 | #-Q- ada # ###################### |
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[1108] | 82 | #-Q- ada # Job name |
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[770] | 83 | #-Q- ada # @ job_name = ::Jobname:: |
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[1108] | 84 | #-Q- ada # Standard output file name |
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[770] | 85 | #-Q- ada # @ output = Script_Output_::Jobname::.000001 |
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[1108] | 86 | #-Q- ada # Error output file name |
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[770] | 87 | #-Q- ada # @ error = Script_Output_::Jobname::.000001 |
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[1240] | 88 | #-Q- ada # Job type |
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| 89 | #-Q- ada # @ job_type = parallel |
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[1108] | 90 | #-Q- ada # Total number of tasks |
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[770] | 91 | #-Q- ada # @ total_tasks = ::JobNumProcTot:: |
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[1240] | 92 | #-Q- ada # Specific option for OpenMP parallelization: Number of OpenMP threads per MPI task |
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| 93 | #-Q- ada # @ parallel_threads = ::openMPthreads:: |
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[1247] | 94 | #-Q- ada # Memory : as_limit=3.5gb max per process per core. With 4 threads per process use max as_limit=14gb |
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| 95 | #-Q- ada # @ as_limit = 3.5gb |
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[1108] | 96 | #-Q- ada # Maximum CPU time per task hh:mm:ss |
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[770] | 97 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
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[1240] | 98 | #-Q- ada # @ environment = "BATCH_NUM_PROC_TOT=::JobNumProcTot::" ; wall_clock_limit=$(wall_clock_limit) |
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[1108] | 99 | #-Q- ada # End of the header options |
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[770] | 100 | #-Q- ada # @ queue |
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[281] | 101 | #-Q- lxiv8 ###################### |
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| 102 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 103 | #-Q- lxiv8 ###################### |
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| 104 | #-Q- lxiv8 #PBS -N ::Jobname:: |
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| 105 | #-Q- lxiv8 #PBS -m a |
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| 106 | #-Q- lxiv8 #PBS -j oe |
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[1126] | 107 | #-Q- lxiv8 #PBS -q mediump |
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[281] | 108 | #-Q- lxiv8 #PBS -o Script_Output_::Jobname::.000001 |
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| 109 | #-Q- lxiv8 #PBS -S /bin/ksh |
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| 110 | #-Q- lxiv8 #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 111 | #-Q- lxiv8 #PBS -l nodes=1:ppn=::JobNumProcTot:: |
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[1184] | 112 | #-Q- ifort_CICLAD ###################### |
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| 113 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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| 114 | #-Q- ifort_CICLAD ###################### |
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| 115 | #-Q- ifort_CICLAD #PBS -N ::Jobname:: |
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| 116 | #-Q- ifort_CICLAD #PBS -m a |
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| 117 | #-Q- ifort_CICLAD #PBS -j oe |
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[1314] | 118 | #-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only |
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[1184] | 119 | #-Q- ifort_CICLAD #PBS -o Script_Output_::Jobname::.000001 |
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| 120 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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| 121 | #-Q- ifort_CICLAD #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 122 | #-Q- ifort_CICLAD #PBS -l nodes=1:ppn=::JobNumProcTot:: |
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[1291] | 123 | #-Q- ifort_CICLAD #PBS -l mem=6gb |
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[1292] | 124 | #-Q- ifort_CICLAD #PBS -l vmem=30gb |
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[2] | 125 | #-Q- default #!/bin/ksh |
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| 126 | #-Q- default ################## |
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| 127 | #-Q- default ## DEFAULT HOST ## |
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| 128 | #-Q- default ################## |
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[815] | 129 | #-Q- default #For MPI use, uncomment next line : |
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[2] | 130 | #-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 131 | |
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[373] | 132 | #************************************************************** |
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| 133 | # Author: Sebastien Denvil |
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| 134 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 135 | # $Revision:: $ Revision of last commit |
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| 136 | # $Author:: $ Author of last commit |
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| 137 | # $Date:: $ Date of last commit |
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[2] | 138 | # IPSL (2006) |
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| 139 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 140 | # |
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| 141 | #************************************************************** |
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[2] | 142 | |
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| 143 | #set -eu |
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| 144 | #set -vx |
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| 145 | |
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| 146 | date |
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| 147 | echo |
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| 148 | echo "#######################################" |
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| 149 | echo "# ANOTHER GREAT SIMULATION #" |
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| 150 | echo "#######################################" |
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| 151 | echo |
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| 152 | |
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| 153 | #D--------------------------------------------------------------------== |
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| 154 | #D- |
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| 155 | #D- Job to launch IGCM models |
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| 156 | #D- |
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| 157 | #D--------------------------------------------------------------------== |
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| 158 | #D- |
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| 159 | |
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| 160 | MODIPSL=::modipsl:: |
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| 161 | libIGCM=${MODIPSL}/libIGCM |
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| 162 | |
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| 163 | #D--------------------------------------------------------------------== |
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[815] | 164 | #D- -1. PLACE FOR USER MODIFICATION |
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| 165 | #D- - Job Verbosity |
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| 166 | #D- - PeriodNb |
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| 167 | #D- - Experience type : DEB(ug), DEV(elopment), RUN |
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[2] | 168 | #D--------------------------------------------------------------------== |
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| 169 | |
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[1356] | 170 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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[815] | 171 | TaskType=computing |
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[1301] | 172 | |
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[2] | 173 | #D- Increased verbosity (1, 2, 3) |
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| 174 | Verbosity=3 |
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[1301] | 175 | |
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[1282] | 176 | #D- postProcessingStopLevel (0,1,2,3) |
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[1301] | 177 | #D- 3 stop the main job if any post-processing went wrong (atlas, monitoring, metrics, create_ts, create_se, rebuild or pack_*) |
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| 178 | #D- 2 stop only if create_ts, create_se or pack_* failed (dont stop if atlas, monitoring or metrics failed) |
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| 179 | #D- 1 stop only if pack_* failed (dont stop if atlas, monitoring, metrics, create_ts or create_se failed) |
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| 180 | #D- 0 never stop the main job for post-processing that went wrong |
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| 181 | postProcessingStopLevel=1 |
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| 182 | |
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[475] | 183 | #D- Experience type : DEB(ug), DEV(elopment), RUN (default) |
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[1282] | 184 | #D- DEB : set -vx mode + output files are NOT read only |
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| 185 | #D- DEV : output files are NOT read only |
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| 186 | #D- RUN : output files ARE read only |
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[475] | 187 | JobType=RUN |
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[1301] | 188 | |
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[2] | 189 | #D- Number of execution in one job |
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[185] | 190 | PeriodNb=1 |
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[2] | 191 | |
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| 192 | #D- |
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[815] | 193 | #D- --------------------------------------------------------------------------------------------------# |
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| 194 | #D- ! OPTIONNAL FEATURES /!\ USE WITH CARE ! # |
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| 195 | #D- --------------------------------------------------------------------------------------------------# |
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[2] | 196 | |
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[475] | 197 | |
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[1096] | 198 | #D- Low level debug : to perform lib test checks, stack construction and IO functions instrumentation |
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[2] | 199 | #D- Default=true |
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[815] | 200 | #D- |
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[1095] | 201 | DEBUG_debug=true |
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[2] | 202 | |
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[988] | 203 | #D- Messaging : all activities and call stacks will be sent to ipsl servers |
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| 204 | #D- If true will imply DEBUG_debug=true |
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| 205 | #D- Default=false |
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| 206 | #D- |
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[1095] | 207 | BigBrother=true |
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[988] | 208 | |
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[2] | 209 | #D- Set DEBUG_sys to false to disable output calls of function |
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[988] | 210 | #D- true when JobType=DEB # means DEB(ug) |
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[815] | 211 | #D- |
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[2] | 212 | #DEBUG_sys=false |
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| 213 | |
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| 214 | #D- Define running directory |
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| 215 | #D- Default=${TMPDIR} ie temporary batch directory |
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[815] | 216 | #D- |
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[154] | 217 | #RUN_DIR_PATH=/workdir/or/scratchdir/of/this/machine |
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[2] | 218 | |
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| 219 | #D- Define submit directory |
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[92] | 220 | #D- Default= where you launch qsub (variable from scheduler) |
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[815] | 221 | #D- |
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[92] | 222 | #SUBMIT_DIR=$( pwd ) |
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[2] | 223 | |
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[1490] | 224 | #D- Define input file root directory R_IN |
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[1373] | 225 | #D- IPSL: /prodigfs/ipslfs/igcmg/IGCM |
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| 226 | #D- TGCC: /ccc/work/cont003/igcmg/igcmg/IGCM |
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[1490] | 227 | #D- IDRIS: /gpfswork/rech/psl/commun/IGCM |
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[1373] | 228 | #D- OBELIX: /home/orchideeshare/igcmg/IGCM |
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[1490] | 229 | #D- Other default: /home_local/${LOGIN}/IGCM |
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[1373] | 230 | |
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| 231 | #D- Change below to override the default |
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[475] | 232 | #R_IN=/u/rech/por/rpor111/DATA |
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| 233 | |
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[2] | 234 | #D- Turn in dry run mode ? (0,1,2,3) |
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| 235 | #D- Default=0 |
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[815] | 236 | #D- |
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[2] | 237 | #DRYRUN=3 |
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[815] | 238 | #D-# YOU HAVE TO COMPILE YOUR EXE FILES to USE DRYRUN MODE ! |
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| 239 | #D-# ------------------------------------------------------------------------------------- |
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| 240 | #D-# | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 241 | #D-# | | Cp/Exe/param/files | | | | |
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| 242 | #D-# | | Chmod Qsub | | | | |
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| 243 | #D-# ------------------------------------------------------------------------------------- |
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| 244 | #D-# | 0 | yes | yes | yes | yes | |
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| 245 | #D-# ------------------------------------------------------------------------------------- |
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| 246 | #D-# | 1 | yes | yes | yes | no | |
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| 247 | #D-# ------------------------------------------------------------------------------------- |
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| 248 | #D-# | 2 | yes | yes | no | no | |
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| 249 | #D-# ------------------------------------------------------------------------------------- |
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| 250 | #D-# | 3 | yes | no | no | no | |
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| 251 | #D-# ------------------------------------------------------------------------------------- |
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[2] | 252 | |
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[475] | 253 | #D- |
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| 254 | # --------------------------------------------------------------------------------------------------# |
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[815] | 255 | #D- ! END OF OPTIONNAL FEATURES /!\ DO NOT MODIFY ANYTHING BELOW UNLESS YOU KNOW WHAT YOU ARE DOING # |
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[475] | 256 | # --------------------------------------------------------------------------------------------------# |
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[2] | 257 | |
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| 258 | #D- |
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| 259 | #D--------------------------------------------------------------------== |
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[1051] | 260 | #D- 0.0 SYSTEM ENVIRONMENT |
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| 261 | #D- - Define variables for Number of processors |
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| 262 | #D- - Define MPI variables |
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| 263 | #D- - Define batch scheduler variables |
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| 264 | #D- - Source IGCM Library |
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| 265 | #D- - Get RESOLution in .resol file (temporary) |
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[2] | 266 | #D--------------------------------------------------------------------== |
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| 267 | |
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[815] | 268 | #---------------------------------------------------------------------== |
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[2] | 269 | |
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| 270 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 271 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 272 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 273 | #------- |
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| 274 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 275 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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| 276 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
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| 277 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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[832] | 278 | #------- |
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| 279 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 280 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 281 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[2] | 282 | |
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[815] | 283 | #--------------------------------------------------------------------== |
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[2] | 284 | |
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| 285 | #-- Resolution FLAG for oasis input |
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[511] | 286 | #RESOL="ORCA2xLMD9671" |
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[138] | 287 | [ -f ${SUBMIT_DIR}/../.resol ] && RESOL=$(head -1 ${SUBMIT_DIR}/../.resol) |
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[511] | 288 | #-- Chemistrie FLAG to ease chemistries configurations management |
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| 289 | #CHEM="AER" |
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[815] | 290 | [ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie) |
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[2] | 291 | |
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| 292 | #D- |
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| 293 | #D--------------------------------------------------------------------== |
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[1051] | 294 | #D- 0.1 COMMON ENVIRONMENT |
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| 295 | #D- - Read libIGCM compatibility version in config.card |
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| 296 | #D- - Read UserChoices section |
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| 297 | #D- - Read Ensemble section |
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| 298 | #D- - Read Post section |
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| 299 | #D- - Define all netcdf output directories |
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| 300 | #D--------------------------------------------------------------------== |
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| 301 | IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card |
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| 302 | |
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[1053] | 303 | if [ ! -r ${SUBMIT_DIR}/run.card ] ; then |
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| 304 | #================================================# |
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| 305 | # The file run.card doesn't exist # |
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| 306 | #================================================# |
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| 307 | FirstInitialize=true |
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| 308 | #copy initial run.card |
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| 309 | IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card |
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| 310 | IGCM_debug_Print 2 "run.card copied from run.card.init" |
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| 311 | else |
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| 312 | FirstInitialize=false |
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| 313 | IGCM_debug_Print 2 "run.card exists" |
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| 314 | fi |
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| 315 | |
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[1051] | 316 | # ------------------------------------------------------------------ |
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| 317 | # Activate BigBrother so as to supervise this simulation |
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| 318 | # ------------------------------------------------------------------ |
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[1189] | 319 | IGCM_debug_BigBro_Initialize |
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[1051] | 320 | |
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| 321 | #D- |
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| 322 | #D--------------------------------------------------------------------== |
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[815] | 323 | #D- 1. INITIALIZE CONFIGURATION |
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| 324 | #D- - Simulation configuration |
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| 325 | #D- - Simulation parameters |
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| 326 | #D- - Execution parameter |
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| 327 | #D- - Define input files directory |
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| 328 | #D- - Read or initialize CumulPeriod |
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| 329 | #D- - run.card |
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[1051] | 330 | #D--------------------------------------------------------------------== |
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[2] | 331 | IGCM_config_Initialize |
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| 332 | |
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| 333 | # --------------------------------------------------------------------== |
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[815] | 334 | # Define, create and cd RUN_DIR |
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[2] | 335 | # --------------------------------------------------------------------== |
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[804] | 336 | RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$} |
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[2] | 337 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 338 | IGCM_sys_Cd ${RUN_DIR} |
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| 339 | |
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[436] | 340 | # ------------------------------------------------------------------ |
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| 341 | # Test if all was right before proceeding further |
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| 342 | # ------------------------------------------------------------------ |
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[432] | 343 | IGCM_debug_Verif_Exit |
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| 344 | |
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[2] | 345 | #D- |
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[815] | 346 | #D---------------------------------------------------------------------== |
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| 347 | #D- 2. INITIALIZE ALL COMPONENT OF THE CONFIGURATION |
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| 348 | #D- - Define component executable |
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| 349 | #D- - Define Write Frequency by component "1M" "1D" ... |
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| 350 | #D- - Source ${comp}.driver |
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| 351 | #D- - Define Storage Places by component |
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| 352 | #D- - ${comp}_Initialize : |
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| 353 | #D- - Patterns to sed |
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| 354 | #D- - Variables from namelist |
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| 355 | #D---------------------------------------------------------------------== |
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[2] | 356 | IGCM_comp_Initialize |
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| 357 | |
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[815] | 358 | #D- |
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| 359 | #D---------------------------------------------------------------------== |
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| 360 | #D- 3. PERFORM GENERAL VERIFICATION |
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| 361 | #D- - Verify compatibility of period length, write frequencies, ... |
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| 362 | #D- - Verify compatibility of rebuild choices and post-process choices |
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| 363 | #D- - Will stop here if something is wrong |
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| 364 | #D---------------------------------------------------------------------== |
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[380] | 365 | IGCM_config_Check |
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[2] | 366 | |
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[380] | 367 | # ------------------------------------------------------------------ |
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[815] | 368 | # Test if all was right before entering the period loop |
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[380] | 369 | # ------------------------------------------------------------------ |
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| 370 | IGCM_debug_Verif_Exit |
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| 371 | |
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[815] | 372 | #D- |
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| 373 | #D---------------------------------------------------------------------== |
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| 374 | #D- 4. ENTER THE DEEP EXECUTION LOOP |
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| 375 | #D- ! FASTEN YOUR SEAT BELTS PLEASE. ! |
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| 376 | #D- ! WE WILL CROSS TURBULENCES. ! |
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| 377 | #D---------------------------------------------------------------------== |
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[2] | 378 | |
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| 379 | Period=1 |
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| 380 | |
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[120] | 381 | PeriodContinue=false |
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| 382 | if [ ${Period} -le ${PeriodNb} ]; then |
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[815] | 383 | PeriodContinue=true |
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[120] | 384 | fi |
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| 385 | while ( ${PeriodContinue} ) ; do |
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| 386 | |
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[785] | 387 | echo |
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| 388 | echo "Starting iteration ${Period} / ${PeriodNb}" |
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[2] | 389 | |
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[785] | 390 | #D- |
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| 391 | # ------------------------------------------------------------------ |
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[815] | 392 | #D- 4.1 COMPUTE AND DEFINE DATE INFORMATION. |
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| 393 | #D- - ${PeriodDateBegin} |
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| 394 | #D- - ${PeriodDateEnd} |
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| 395 | #D- - ${CumulPeriod} |
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| 396 | #D- - ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd} |
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| 397 | #D- - ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0 |
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| 398 | #D- - update run.card value |
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[785] | 399 | # ------------------------------------------------------------------ |
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| 400 | IGCM_config_PeriodStart |
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[2] | 401 | |
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[785] | 402 | #D- |
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| 403 | # ------------------------------------------------------------------ |
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[815] | 404 | #D- 4.2 BEGIN COMPUTATION ONLY IF NEEDED |
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[785] | 405 | # ------------------------------------------------------------------ |
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| 406 | if [ ${SimulationLengthInDays} -gt ${ExperienceLengthInDays} ] ; then |
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[1351] | 407 | IGCM_debug_Print 1 "break because '\${SimulationLengthInDays} -gt \${ExperienceLengthInDays}' : ${SimulationLengthInDays} -gt ${ExperienceLengthInDays}" |
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[785] | 408 | break ; |
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| 409 | fi |
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[2] | 410 | |
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[785] | 411 | #D- |
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| 412 | # ------------------------------------------------------------------ |
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[815] | 413 | #D- 4.3 CALL OPTIONNAL FUNCTION WITHIN DRIVER |
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| 414 | #D- - to set special variables used in lists (Param, Init or Bc). |
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[785] | 415 | # ------------------------------------------------------------------ |
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| 416 | IGCM_comp_PeriodStart |
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[2] | 417 | |
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[785] | 418 | #D- |
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| 419 | # ------------------------------------------------------------------ |
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[815] | 420 | #D- 4.4 GET PARAMETERS TEXT FILES UPDATED BY JOB |
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| 421 | #D- - (.def, namelist ...) |
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| 422 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
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[785] | 423 | # ------------------------------------------------------------------ |
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| 424 | IGCM_comp_GetInputParametersFiles |
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[262] | 425 | |
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[785] | 426 | #D- |
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| 427 | # ------------------------------------------------------------------ |
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[815] | 428 | #D- 4.5 GET INITIAL STATE |
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| 429 | #D- - (Etat0, carteveg,relief...) |
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| 430 | #D- - NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1 |
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| 431 | #D- - AND ???_Restart=NO |
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| 432 | #D- - READ AND USE BY GCM FOR ONLY ONE EXECUTION. |
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[785] | 433 | # ------------------------------------------------------------------ |
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| 434 | IGCM_comp_GetInputInitialStateFiles |
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[2] | 435 | |
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[785] | 436 | #D- |
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| 437 | # ------------------------------------------------------------------ |
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[815] | 438 | #D- 4.6 GET BOUNDARIES CONDITIONS |
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| 439 | #D- - (SST, WIND[X,Y,Z], LAI ...) |
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| 440 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
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[785] | 441 | # ------------------------------------------------------------------ |
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| 442 | IGCM_comp_GetInputBoundaryFiles |
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[2] | 443 | |
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[785] | 444 | #D- |
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| 445 | # ------------------------------------------------------------------ |
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[815] | 446 | #D- 4.7 GET SmoothFiles CONDITIONS |
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| 447 | #D- - (SST, WIND[X,Y,Z], LAI ...) |
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| 448 | #D- - READ AND USE BY GCM AT EACH EXECUTION |
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| 449 | #D- - Do not change at each ${Period} |
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[785] | 450 | # ------------------------------------------------------------------ |
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[815] | 451 | IGCM_comp_GetInputSmoothFiles |
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[2] | 452 | |
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[785] | 453 | #D- |
---|
| 454 | # ------------------------------------------------------------------ |
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[815] | 455 | #D- 4.8 GET RESTART FILES |
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| 456 | #D- - (restartphy.nc, orca_restart.nc ...) |
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| 457 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
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[785] | 458 | #D- |
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[815] | 459 | #D- - IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART |
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| 460 | #D- - ONLY IF CumulPeriod= (=> NUMERO) == 1 |
---|
| 461 | #D- - MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e) |
---|
[785] | 462 | #D- |
---|
[815] | 463 | #D- - IF CumulPeriod == 1 |
---|
| 464 | #D- - AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART |
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| 465 | #D- - MUST BRING THIS RESTART IN ${RUN_DIR_PATH} |
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[785] | 466 | #D- |
---|
[815] | 467 | #D- - ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH} |
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[785] | 468 | # ------------------------------------------------------------------ |
---|
| 469 | IGCM_comp_GetInputRestartFiles |
---|
[2] | 470 | |
---|
[785] | 471 | # ------------------------------------------------------------------ |
---|
[1409] | 472 | #D- 4.9 GET BINARY FILES |
---|
| 473 | #D- - USED BY AT EACH EXECUTION. |
---|
| 474 | #D- - CHECK BINARIES HAS BEEN COMPILED WITH THE SAME COMPILER |
---|
| 475 | #D- - RELOAD THE APPROPRIATE ENVIRONMENT THE FIRST TIME IF NEEDED |
---|
| 476 | # ------------------------------------------------------------------ |
---|
| 477 | IGCM_comp_GetInputBinaryFiles |
---|
| 478 | |
---|
| 479 | # ------------------------------------------------------------------ |
---|
[815] | 480 | # Test if all was right before Update |
---|
[785] | 481 | # ------------------------------------------------------------------ |
---|
| 482 | IGCM_debug_Verif_Exit |
---|
[2] | 483 | |
---|
[815] | 484 | #D- |
---|
[785] | 485 | # ------------------------------------------------------------------ |
---|
[1409] | 486 | #D- 4.10 ACTIVATE RUNNING ENVIRONNEMENT VARIABLES |
---|
| 487 | #D- - including module load associated to compiler & tools |
---|
| 488 | #D- - .env_intel17.0.2_curie |
---|
| 489 | #D- - .env_netcdf4.3.3.1_curie |
---|
[785] | 490 | # ------------------------------------------------------------------ |
---|
| 491 | IGCM_sys_activ_variables |
---|
[2] | 492 | |
---|
[785] | 493 | #D- |
---|
| 494 | # ------------------------------------------------------------------ |
---|
[1409] | 495 | #D- 4.11 UPDATE ParametersFiles |
---|
[815] | 496 | #D- - (.def, namelist ...) |
---|
| 497 | #D- - with current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...) |
---|
[785] | 498 | # ------------------------------------------------------------------ |
---|
| 499 | IGCM_comp_Update |
---|
| 500 | |
---|
| 501 | # ------------------------------------------------------------------ |
---|
[815] | 502 | # Test if all was right before execution |
---|
[785] | 503 | # ------------------------------------------------------------------ |
---|
| 504 | IGCM_debug_Verif_Exit |
---|
| 505 | |
---|
[1492] | 506 | #-Q- jeanzay # Workaround at Jean-Zay |
---|
| 507 | #-Q- jeanzay source $I_MPI_ROOT/intel64/bin/mpivars.sh release_mt |
---|
| 508 | |
---|
[785] | 509 | #D- |
---|
[815] | 510 | #D---------------------------------------------------------------------== |
---|
| 511 | #D- 5. EXECUTION |
---|
| 512 | #D---------------------------------------------------------------------== |
---|
[785] | 513 | |
---|
| 514 | echo |
---|
| 515 | echo "#######################################" |
---|
| 516 | echo "# DIR BEFORE RUN EXECUTION #" |
---|
| 517 | echo "#######################################" |
---|
| 518 | echo |
---|
| 519 | ls -lrt |
---|
| 520 | |
---|
| 521 | echo "========================================================================" |
---|
| 522 | if [ ${DRYRUN} -le 1 ] ; then |
---|
| 523 | REAL_DATE_INIT=$( date ) |
---|
| 524 | echo > ${Exe_Output} |
---|
| 525 | echo "#######################################" >> ${Exe_Output} |
---|
| 526 | echo "EXECUTION of : ${EXECUTION}" |
---|
| 527 | echo "EXECUTION of : ${EXECUTION}" >> ${Exe_Output} |
---|
| 528 | echo >> ${Exe_Output} |
---|
| 529 | typeset RET |
---|
| 530 | RUN_DATE_BEGIN=$( date '+%Y-%m-%dT%H:%M:%S' ) |
---|
| 531 | ${EXECUTION} >> ${Exe_Output} 2>&1 |
---|
| 532 | RET=$? |
---|
| 533 | RUN_DATE_END=$( date '+%Y-%m-%dT%H:%M:%S' ) |
---|
| 534 | if [ ${RET} -gt 0 ] ; then |
---|
| 535 | echo "Return code of executable :" ${RET} |
---|
| 536 | IGCM_debug_Exit "EXECUTABLE" |
---|
| 537 | IGCM_sys_Mkdir ${SUBMIT_DIR}/Debug |
---|
| 538 | IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/Debug/${PREFIX}_${Exe_Output}_error |
---|
| 539 | ExecutionFail=true |
---|
[2] | 540 | fi |
---|
[785] | 541 | echo >> ${Exe_Output} |
---|
| 542 | echo "#######################################" >> ${Exe_Output} |
---|
| 543 | echo "libIGCM RunDateBegin=${RUN_DATE_BEGIN}" >> ${Exe_Output} |
---|
| 544 | echo "libIGCM RunDateEnd=${RUN_DATE_END}" >> ${Exe_Output} |
---|
| 545 | echo >> ${Exe_Output} |
---|
| 546 | else |
---|
| 547 | echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN |
---|
| 548 | echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN > ${Exe_Output} |
---|
| 549 | if ( $DEBUG_debug ) ; then |
---|
| 550 | echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack |
---|
| 551 | fi |
---|
| 552 | fi |
---|
| 553 | echo "========================================================================" |
---|
[2] | 554 | |
---|
[785] | 555 | echo |
---|
| 556 | echo "#######################################" |
---|
| 557 | echo "# DIR AFTER RUN EXECUTION #" |
---|
| 558 | echo "#######################################" |
---|
| 559 | echo |
---|
| 560 | ls -lrt |
---|
[2] | 561 | |
---|
[785] | 562 | #D- |
---|
[815] | 563 | #D---------------------------------------------------------------------== |
---|
| 564 | #D- 6. POST EXECUTION OPERATIONS |
---|
| 565 | #D---------------------------------------------------------------------== |
---|
| 566 | |
---|
| 567 | #D- |
---|
[785] | 568 | # ------------------------------------------------------------------ |
---|
[815] | 569 | #D- 6.1. DESACTIVATE RUNNING ENVIRONNEMENT VARIABLES |
---|
[785] | 570 | # ------------------------------------------------------------------ |
---|
| 571 | IGCM_sys_desactiv_variables |
---|
[2] | 572 | |
---|
[785] | 573 | #D- |
---|
| 574 | # ------------------------------------------------------------------ |
---|
[815] | 575 | #D- 6.2. SAVE OUTPUTS |
---|
| 576 | #D- - On archive/storage machine |
---|
| 577 | #D- - netcdf outputs, restarts and text files of models |
---|
[785] | 578 | # ------------------------------------------------------------------ |
---|
| 579 | IGCM_comp_Finalize |
---|
[2] | 580 | |
---|
[785] | 581 | # ------------------------------------------------------------------ |
---|
[815] | 582 | # Test if all was right after Finalize |
---|
[785] | 583 | # ------------------------------------------------------------------ |
---|
| 584 | IGCM_debug_Verif_Exit |
---|
[2] | 585 | |
---|
[785] | 586 | #D- |
---|
| 587 | # ------------------------------------------------------------------ |
---|
[815] | 588 | #D- 6.3. CONFIGURE POST-PROCESSING |
---|
| 589 | #D- - asynchronous post-treatment (Level 0) when necessary (rebuild/pack) |
---|
| 590 | #D- - classic post-treatment (Level 1) when necessary (TimeSeries/Seasonal) |
---|
[785] | 591 | # ------------------------------------------------------------------ |
---|
| 592 | IGCM_post_Configure |
---|
[2] | 593 | |
---|
[785] | 594 | #D- |
---|
| 595 | # ------------------------------------------------------------------ |
---|
[815] | 596 | #D- 6.4. SUBMIT POST-PROCESSING |
---|
| 597 | #D- - remote rebuild or/and post-treatment process if necessary |
---|
[785] | 598 | # ------------------------------------------------------------------ |
---|
| 599 | IGCM_post_Submit |
---|
[380] | 600 | |
---|
[785] | 601 | #D- |
---|
| 602 | # ------------------------------------------------------------------ |
---|
[815] | 603 | #D- 6.5. FINALYZE CURRENT LOOP AND PREPARE NEXT ONE |
---|
| 604 | #D- - Manage executable size to save only different binary |
---|
| 605 | #D- - Write in run.card user, system and elapse time |
---|
| 606 | #D- - Check that everything went well ! No ? then we stop. |
---|
| 607 | #D- - Determine next computed period |
---|
[785] | 608 | # ------------------------------------------------------------------ |
---|
| 609 | IGCM_config_PeriodEnd |
---|
[2] | 610 | |
---|
[785] | 611 | echo "Ending iteration ${Period}" |
---|
| 612 | (( Period = Period + 1 )) |
---|
[2] | 613 | |
---|
[785] | 614 | # End loop if date end is reached |
---|
| 615 | if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then |
---|
| 616 | break ; |
---|
| 617 | fi |
---|
[2] | 618 | |
---|
[785] | 619 | PeriodContinue=false |
---|
| 620 | if [ ${Period} -le ${PeriodNb} ]; then |
---|
| 621 | PeriodContinue=true |
---|
| 622 | fi |
---|
| 623 | done |
---|
[2] | 624 | |
---|
| 625 | #D- |
---|
[815] | 626 | #D---------------------------------------------------------------------== |
---|
| 627 | #D- 7. SUBMIT NEXT JOB OR SEND MAIL IF SIMULATION IS OVER. |
---|
| 628 | #D---------------------------------------------------------------------== |
---|
[2] | 629 | IGCM_config_Finalize |
---|
| 630 | |
---|
| 631 | date |
---|