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source: trunk/libIGCM/AA_job @ 1496

Last change on this file since 1496 was 1492, checked in by jgipsl, 5 years ago
Treated case MPMD MPI only (executaionType=1) at jeanzay. Note mpivars.h currently needed for this case is sourced from main job for all cases at jeanzay.
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
File size: 24.4 KB

Rev	Line
[704]	1	#-Q- curie #!/bin/ksh
[619]	2	#-Q- curie ######################
	3	#-Q- curie ## CURIE TGCC/CEA ##
	4	#-Q- curie ######################
[1030]	5	#-Q- curie #MSUB -r ::Jobname:: # Job Name
	6	#-Q- curie #MSUB -o Script_Output_::Jobname::.000001 # standard output
	7	#-Q- curie #MSUB -e Script_Output_::Jobname::.000001 # error output
[619]	8	#-Q- curie #MSUB -eo
[1149]	9	#-Q- curie #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case)
[1238]	10	#-Q- curie #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD
	11	#-Q- curie #MSUB -x # exclusive node. To specify only for MPMD together with the one below
	12	#-Q- curie #MSUB -E '--cpu_bind=none'
[1389]	13	#-Q- curie ##MSUB -E '--distribution cyclic'
[1030]	14	#-Q- curie #MSUB -T 86400 # Wall clock limit (seconds)
	15	#-Q- curie #MSUB -q standard # thin nodes
[1427]	16	#-Q- curie ##MSUB -U high
	17	#-Q- curie #MSUB -U medium
	18	#-Q- curie ##MSUB -U low
[837]	19	#-Q- curie #MSUB -A ::default_project::
[1454]	20	#-Q- curie #MSUB -E --no-requeue
[1108]	21	#-Q- curie # Below specific options that can be activated
	22	#-Q- curie ##MSUB -q ivybridge # Option for Airain
	23	#-Q- curie
[619]	24	#-Q- curie BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
[681]	25	#-Q- curie set +x
[1432]	26	#-Q- irene #!/bin/ksh
	27	#-Q- irene ######################
	28	#-Q- irene ## IRENE TGCC/CEA ##
	29	#-Q- irene ######################
	30	#-Q- irene #MSUB -r ::Jobname:: # Job Name
	31	#-Q- irene #MSUB -o Script_Output_::Jobname::.000001 # standard output
	32	#-Q- irene #MSUB -e Script_Output_::Jobname::.000001 # error output
	33	#-Q- irene #MSUB -eo
	34	#-Q- irene #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case)
	35	#-Q- irene #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD
	36	#-Q- irene #MSUB -x # exclusive node. To specify only for MPMD together with the one below
	37	#-Q- irene #MSUB -E '--cpu_bind=none'
	38	#-Q- irene #MSUB -T 86400 # Wall clock limit (seconds)
[1437]	39	#-Q- irene #MSUB -A ::default_project::
[1432]	40	#-Q- irene #MSUB -q skylake
[1460]	41	#-Q- irene #MSUB -m store,work,scratch
[1432]	42	#-Q- irene
	43	#-Q- irene BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
	44	#-Q- irene set +x
[1490]	45	#-Q- jeanzay #!/bin/ksh
	46	#-Q- jeanzay ######################
	47	#-Q- jeanzay ## JEANZAY IDRIS ##
	48	#-Q- jeanzay ######################
	49	#-Q- jeanzay #SBATCH --job-name=::Jobname:: # Job Name
	50	#-Q- jeanzay #SBATCH --output=Script_Output_::Jobname::.000001 # standard output
	51	#-Q- jeanzay #SBATCH --error=Script_Output_::Jobname::.000001 # error output
	52	#-Q- jeanzay #SBATCH --ntasks=::JobNumProcTot:: # Number of MPI tasks
	53	#-Q- jeanzay #SBATCH --cpus-per-task=::openMPthreads:: # Number of openMP threads.
	54	#-Q- jeanzay #SBATCH --hint=nomultithread # 1 processus MPI par coeur physique (pas d'hyperthreading)
	55	#-Q- jeanzay #SBATCH --time=00:30:00 # Wall clock limit (seconds)
	56	#-Q- jeanzay #SBATCH --account ::default_project::@cpu
	57	#-Q- jeanzay
	58	#-Q- jeanzay ##BATCH_NUM_PROC_TOT=$BRIDGE_SBATCH_NPROC
	59	#-Q- jeanzay set +x
[770]	60	#-Q- ada #!/bin/ksh
	61	#-Q- ada # ######################
[929]	62	#-Q- ada # ## ADA IDRIS ##
[770]	63	#-Q- ada # ######################
[1108]	64	#-Q- ada # Job name
[770]	65	#-Q- ada # @ job_name = ::Jobname::
[1108]	66	#-Q- ada # Standard output file name
[770]	67	#-Q- ada # @ output = Script_Output_::Jobname::.000001
[1108]	68	#-Q- ada # Error output file name
[770]	69	#-Q- ada # @ error = Script_Output_::Jobname::.000001
[1240]	70	#-Q- ada # Job type
	71	#-Q- ada # @ job_type = parallel
[1108]	72	#-Q- ada # Total number of tasks
[770]	73	#-Q- ada # @ total_tasks = ::JobNumProcTot::
[1240]	74	#-Q- ada # Specific option for OpenMP parallelization: Number of OpenMP threads per MPI task
	75	#-Q- ada # @ parallel_threads = ::openMPthreads::
[1247]	76	#-Q- ada # Memory : as_limit=3.5gb max per process per core. With 4 threads per process use max as_limit=14gb
	77	#-Q- ada # @ as_limit = 3.5gb
[1108]	78	#-Q- ada # Maximum CPU time per task hh:mm:ss
[770]	79	#-Q- ada # @ wall_clock_limit = 1:00:00
[1240]	80	#-Q- ada # @ environment = "BATCH_NUM_PROC_TOT=::JobNumProcTot::" ; wall_clock_limit=$(wall_clock_limit)
[1108]	81	#-Q- ada # End of the header options
[770]	82	#-Q- ada # @ queue
[281]	83	#-Q- lxiv8 ######################
	84	#-Q- lxiv8 ## OBELIX LSCE ##
	85	#-Q- lxiv8 ######################
	86	#-Q- lxiv8 #PBS -N ::Jobname::
	87	#-Q- lxiv8 #PBS -m a
	88	#-Q- lxiv8 #PBS -j oe
[1126]	89	#-Q- lxiv8 #PBS -q mediump
[281]	90	#-Q- lxiv8 #PBS -o Script_Output_::Jobname::.000001
	91	#-Q- lxiv8 #PBS -S /bin/ksh
	92	#-Q- lxiv8 #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot::
	93	#-Q- lxiv8 #PBS -l nodes=1:ppn=::JobNumProcTot::
[1184]	94	#-Q- ifort_CICLAD ######################
	95	#-Q- ifort_CICLAD ## CICLAD IPSL ##
	96	#-Q- ifort_CICLAD ######################
	97	#-Q- ifort_CICLAD #PBS -N ::Jobname::
	98	#-Q- ifort_CICLAD #PBS -m a
	99	#-Q- ifort_CICLAD #PBS -j oe
[1314]	100	#-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only
[1184]	101	#-Q- ifort_CICLAD #PBS -o Script_Output_::Jobname::.000001
	102	#-Q- ifort_CICLAD #PBS -S /bin/ksh
	103	#-Q- ifort_CICLAD #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot::
	104	#-Q- ifort_CICLAD #PBS -l nodes=1:ppn=::JobNumProcTot::
[1291]	105	#-Q- ifort_CICLAD #PBS -l mem=6gb
[1292]	106	#-Q- ifort_CICLAD #PBS -l vmem=30gb
[2]	107	#-Q- default #!/bin/ksh
	108	#-Q- default ##################
	109	#-Q- default ## DEFAULT HOST ##
	110	#-Q- default ##################
[815]	111	#-Q- default #For MPI use, uncomment next line :
[2]	112	#-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot::
	113
[373]	114	#**************************************************************
	115	# Author: Sebastien Denvil
	116	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
	117	# $Revision:: $ Revision of last commit
	118	# $Author:: $ Author of last commit
	119	# $Date:: $ Date of last commit
[2]	120	# IPSL (2006)
	121	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
[373]	122	#
	123	#**************************************************************
[2]	124
	125	#set -eu
	126	#set -vx
	127
	128	date
	129	echo
	130	echo "#######################################"
	131	echo "# ANOTHER GREAT SIMULATION #"
	132	echo "#######################################"
	133	echo
	134
	135	#D--------------------------------------------------------------------==
	136	#D-
	137	#D- Job to launch IGCM models
	138	#D-
	139	#D--------------------------------------------------------------------==
	140	#D-
	141
	142	MODIPSL=::modipsl::
	143	libIGCM=${MODIPSL}/libIGCM
	144
	145	#D--------------------------------------------------------------------==
[815]	146	#D- -1. PLACE FOR USER MODIFICATION
	147	#D- - Job Verbosity
	148	#D- - PeriodNb
	149	#D- - Experience type : DEB(ug), DEV(elopment), RUN
[2]	150	#D--------------------------------------------------------------------==
	151
[1356]	152	#D- Task type DO NOT CHANGE (computing, post-processing or checking)
[815]	153	TaskType=computing
[1301]	154
[2]	155	#D- Increased verbosity (1, 2, 3)
	156	Verbosity=3
[1301]	157
[1282]	158	#D- postProcessingStopLevel (0,1,2,3)
[1301]	159	#D- 3 stop the main job if any post-processing went wrong (atlas, monitoring, metrics, create_ts, create_se, rebuild or pack_*)
	160	#D- 2 stop only if create_ts, create_se or pack_* failed (dont stop if atlas, monitoring or metrics failed)
	161	#D- 1 stop only if pack_* failed (dont stop if atlas, monitoring, metrics, create_ts or create_se failed)
	162	#D- 0 never stop the main job for post-processing that went wrong
	163	postProcessingStopLevel=1
	164
[475]	165	#D- Experience type : DEB(ug), DEV(elopment), RUN (default)
[1282]	166	#D- DEB : set -vx mode + output files are NOT read only
	167	#D- DEV : output files are NOT read only
	168	#D- RUN : output files ARE read only
[475]	169	JobType=RUN
[1301]	170
[2]	171	#D- Number of execution in one job
[185]	172	PeriodNb=1
[2]	173
	174	#D-
[815]	175	#D- --------------------------------------------------------------------------------------------------#
	176	#D- ! OPTIONNAL FEATURES /!\ USE WITH CARE ! #
	177	#D- --------------------------------------------------------------------------------------------------#
[2]	178
[475]	179
[1096]	180	#D- Low level debug : to perform lib test checks, stack construction and IO functions instrumentation
[2]	181	#D- Default=true
[815]	182	#D-
[1095]	183	DEBUG_debug=true
[2]	184
[988]	185	#D- Messaging : all activities and call stacks will be sent to ipsl servers
	186	#D- If true will imply DEBUG_debug=true
	187	#D- Default=false
	188	#D-
[1095]	189	BigBrother=true
[988]	190
[2]	191	#D- Set DEBUG_sys to false to disable output calls of function
[988]	192	#D- true when JobType=DEB # means DEB(ug)
[815]	193	#D-
[2]	194	#DEBUG_sys=false
	195
	196	#D- Define running directory
	197	#D- Default=${TMPDIR} ie temporary batch directory
[815]	198	#D-
[154]	199	#RUN_DIR_PATH=/workdir/or/scratchdir/of/this/machine
[2]	200
	201	#D- Define submit directory
[92]	202	#D- Default= where you launch qsub (variable from scheduler)
[815]	203	#D-
[92]	204	#SUBMIT_DIR=$( pwd )
[2]	205
[1490]	206	#D- Define input file root directory R_IN
[1373]	207	#D- IPSL: /prodigfs/ipslfs/igcmg/IGCM
	208	#D- TGCC: /ccc/work/cont003/igcmg/igcmg/IGCM
[1490]	209	#D- IDRIS: /gpfswork/rech/psl/commun/IGCM
[1373]	210	#D- OBELIX: /home/orchideeshare/igcmg/IGCM
[1490]	211	#D- Other default: /home_local/${LOGIN}/IGCM
[1373]	212
	213	#D- Change below to override the default
[475]	214	#R_IN=/u/rech/por/rpor111/DATA
	215
[2]	216	#D- Turn in dry run mode ? (0,1,2,3)
	217	#D- Default=0
[815]	218	#D-
[2]	219	#DRYRUN=3
[815]	220	#D-# YOU HAVE TO COMPILE YOUR EXE FILES to USE DRYRUN MODE !
	221	#D-# -------------------------------------------------------------------------------------
	222	#D-# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
	223	#D-# \| \| Cp/Exe/param/files \| \| \| \|
	224	#D-# \| \| Chmod Qsub \| \| \| \|
	225	#D-# -------------------------------------------------------------------------------------
	226	#D-# \| 0 \| yes \| yes \| yes \| yes \|
	227	#D-# -------------------------------------------------------------------------------------
	228	#D-# \| 1 \| yes \| yes \| yes \| no \|
	229	#D-# -------------------------------------------------------------------------------------
	230	#D-# \| 2 \| yes \| yes \| no \| no \|
	231	#D-# -------------------------------------------------------------------------------------
	232	#D-# \| 3 \| yes \| no \| no \| no \|
	233	#D-# -------------------------------------------------------------------------------------
[2]	234
[475]	235	#D-
	236	# --------------------------------------------------------------------------------------------------#
[815]	237	#D- ! END OF OPTIONNAL FEATURES /!\ DO NOT MODIFY ANYTHING BELOW UNLESS YOU KNOW WHAT YOU ARE DOING #
[475]	238	# --------------------------------------------------------------------------------------------------#
[2]	239
	240	#D-
	241	#D--------------------------------------------------------------------==
[1051]	242	#D- 0.0 SYSTEM ENVIRONMENT
	243	#D- - Define variables for Number of processors
	244	#D- - Define MPI variables
	245	#D- - Define batch scheduler variables
	246	#D- - Source IGCM Library
	247	#D- - Get RESOLution in .resol file (temporary)
[2]	248	#D--------------------------------------------------------------------==
	249
[815]	250	#---------------------------------------------------------------------==
[2]	251
	252	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
	253	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
	254	. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
	255	#-------
	256	. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
	257	. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
	258	. ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh
	259	. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
[832]	260	#-------
	261	( ${DEBUG_debug} ) && IGCM_debug_Check
	262	( ${DEBUG_debug} ) && IGCM_card_Check
	263	( ${DEBUG_debug} ) && IGCM_date_Check
[2]	264
[815]	265	#--------------------------------------------------------------------==
[2]	266
	267	#-- Resolution FLAG for oasis input
[511]	268	#RESOL="ORCA2xLMD9671"
[138]	269	[ -f ${SUBMIT_DIR}/../.resol ] && RESOL=$(head -1 ${SUBMIT_DIR}/../.resol)
[511]	270	#-- Chemistrie FLAG to ease chemistries configurations management
	271	#CHEM="AER"
[815]	272	[ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie)
[2]	273
	274	#D-
	275	#D--------------------------------------------------------------------==
[1051]	276	#D- 0.1 COMMON ENVIRONMENT
	277	#D- - Read libIGCM compatibility version in config.card
	278	#D- - Read UserChoices section
	279	#D- - Read Ensemble section
	280	#D- - Read Post section
	281	#D- - Define all netcdf output directories
	282	#D--------------------------------------------------------------------==
	283	IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card
	284
[1053]	285	if [ ! -r ${SUBMIT_DIR}/run.card ] ; then
	286	#================================================#
	287	# The file run.card doesn't exist #
	288	#================================================#
	289	FirstInitialize=true
	290	#copy initial run.card
	291	IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card
	292	IGCM_debug_Print 2 "run.card copied from run.card.init"
	293	else
	294	FirstInitialize=false
	295	IGCM_debug_Print 2 "run.card exists"
	296	fi
	297
[1051]	298	# ------------------------------------------------------------------
	299	# Activate BigBrother so as to supervise this simulation
	300	# ------------------------------------------------------------------
[1189]	301	IGCM_debug_BigBro_Initialize
[1051]	302
	303	#D-
	304	#D--------------------------------------------------------------------==
[815]	305	#D- 1. INITIALIZE CONFIGURATION
	306	#D- - Simulation configuration
	307	#D- - Simulation parameters
	308	#D- - Execution parameter
	309	#D- - Define input files directory
	310	#D- - Read or initialize CumulPeriod
	311	#D- - run.card
[1051]	312	#D--------------------------------------------------------------------==
[2]	313	IGCM_config_Initialize
	314
	315	# --------------------------------------------------------------------==
[815]	316	# Define, create and cd RUN_DIR
[2]	317	# --------------------------------------------------------------------==
[804]	318	RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$}
[2]	319	IGCM_sys_MkdirWork ${RUN_DIR}
	320	IGCM_sys_Cd ${RUN_DIR}
	321
[436]	322	# ------------------------------------------------------------------
	323	# Test if all was right before proceeding further
	324	# ------------------------------------------------------------------
[432]	325	IGCM_debug_Verif_Exit
	326
[2]	327	#D-
[815]	328	#D---------------------------------------------------------------------==
	329	#D- 2. INITIALIZE ALL COMPONENT OF THE CONFIGURATION
	330	#D- - Define component executable
	331	#D- - Define Write Frequency by component "1M" "1D" ...
	332	#D- - Source ${comp}.driver
	333	#D- - Define Storage Places by component
	334	#D- - ${comp}_Initialize :
	335	#D- - Patterns to sed
	336	#D- - Variables from namelist
	337	#D---------------------------------------------------------------------==
[2]	338	IGCM_comp_Initialize
	339
[815]	340	#D-
	341	#D---------------------------------------------------------------------==
	342	#D- 3. PERFORM GENERAL VERIFICATION
	343	#D- - Verify compatibility of period length, write frequencies, ...
	344	#D- - Verify compatibility of rebuild choices and post-process choices
	345	#D- - Will stop here if something is wrong
	346	#D---------------------------------------------------------------------==
[380]	347	IGCM_config_Check
[2]	348
[380]	349	# ------------------------------------------------------------------
[815]	350	# Test if all was right before entering the period loop
[380]	351	# ------------------------------------------------------------------
	352	IGCM_debug_Verif_Exit
	353
[815]	354	#D-
	355	#D---------------------------------------------------------------------==
	356	#D- 4. ENTER THE DEEP EXECUTION LOOP
	357	#D- ! FASTEN YOUR SEAT BELTS PLEASE. !
	358	#D- ! WE WILL CROSS TURBULENCES. !
	359	#D---------------------------------------------------------------------==
[2]	360
	361	Period=1
	362
[120]	363	PeriodContinue=false
	364	if [ ${Period} -le ${PeriodNb} ]; then
[815]	365	PeriodContinue=true
[120]	366	fi
	367	while ( ${PeriodContinue} ) ; do
	368
[785]	369	echo
	370	echo "Starting iteration ${Period} / ${PeriodNb}"
[2]	371
[785]	372	#D-
	373	# ------------------------------------------------------------------
[815]	374	#D- 4.1 COMPUTE AND DEFINE DATE INFORMATION.
	375	#D- - ${PeriodDateBegin}
	376	#D- - ${PeriodDateEnd}
	377	#D- - ${CumulPeriod}
	378	#D- - ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd}
	379	#D- - ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0
	380	#D- - update run.card value
[785]	381	# ------------------------------------------------------------------
	382	IGCM_config_PeriodStart
[2]	383
[785]	384	#D-
	385	# ------------------------------------------------------------------
[815]	386	#D- 4.2 BEGIN COMPUTATION ONLY IF NEEDED
[785]	387	# ------------------------------------------------------------------
	388	if [ ${SimulationLengthInDays} -gt ${ExperienceLengthInDays} ] ; then
[1351]	389	IGCM_debug_Print 1 "break because '\${SimulationLengthInDays} -gt \${ExperienceLengthInDays}' : ${SimulationLengthInDays} -gt ${ExperienceLengthInDays}"
[785]	390	break ;
	391	fi
[2]	392
[785]	393	#D-
	394	# ------------------------------------------------------------------
[815]	395	#D- 4.3 CALL OPTIONNAL FUNCTION WITHIN DRIVER
	396	#D- - to set special variables used in lists (Param, Init or Bc).
[785]	397	# ------------------------------------------------------------------
	398	IGCM_comp_PeriodStart
[2]	399
[785]	400	#D-
	401	# ------------------------------------------------------------------
[815]	402	#D- 4.4 GET PARAMETERS TEXT FILES UPDATED BY JOB
	403	#D- - (.def, namelist ...)
	404	#D- - READ AND USE BY GCM AT EACH EXECUTION.
[785]	405	# ------------------------------------------------------------------
	406	IGCM_comp_GetInputParametersFiles
[262]	407
[785]	408	#D-
	409	# ------------------------------------------------------------------
[815]	410	#D- 4.5 GET INITIAL STATE
	411	#D- - (Etat0, carteveg,relief...)
	412	#D- - NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1
	413	#D- - AND ???_Restart=NO
	414	#D- - READ AND USE BY GCM FOR ONLY ONE EXECUTION.
[785]	415	# ------------------------------------------------------------------
	416	IGCM_comp_GetInputInitialStateFiles
[2]	417
[785]	418	#D-
	419	# ------------------------------------------------------------------
[815]	420	#D- 4.6 GET BOUNDARIES CONDITIONS
	421	#D- - (SST, WIND[X,Y,Z], LAI ...)
	422	#D- - READ AND USE BY GCM AT EACH EXECUTION.
[785]	423	# ------------------------------------------------------------------
	424	IGCM_comp_GetInputBoundaryFiles
[2]	425
[785]	426	#D-
	427	# ------------------------------------------------------------------
[815]	428	#D- 4.7 GET SmoothFiles CONDITIONS
	429	#D- - (SST, WIND[X,Y,Z], LAI ...)
	430	#D- - READ AND USE BY GCM AT EACH EXECUTION
	431	#D- - Do not change at each ${Period}
[785]	432	# ------------------------------------------------------------------
[815]	433	IGCM_comp_GetInputSmoothFiles
[2]	434
[785]	435	#D-
	436	# ------------------------------------------------------------------
[815]	437	#D- 4.8 GET RESTART FILES
	438	#D- - (restartphy.nc, orca_restart.nc ...)
	439	#D- - READ AND USE BY GCM AT EACH EXECUTION.
[785]	440	#D-
[815]	441	#D- - IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART
	442	#D- - ONLY IF CumulPeriod= (=> NUMERO) == 1
	443	#D- - MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e)
[785]	444	#D-
[815]	445	#D- - IF CumulPeriod == 1
	446	#D- - AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART
	447	#D- - MUST BRING THIS RESTART IN ${RUN_DIR_PATH}
[785]	448	#D-
[815]	449	#D- - ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH}
[785]	450	# ------------------------------------------------------------------
	451	IGCM_comp_GetInputRestartFiles
[2]	452
[785]	453	# ------------------------------------------------------------------
[1409]	454	#D- 4.9 GET BINARY FILES
	455	#D- - USED BY AT EACH EXECUTION.
	456	#D- - CHECK BINARIES HAS BEEN COMPILED WITH THE SAME COMPILER
	457	#D- - RELOAD THE APPROPRIATE ENVIRONMENT THE FIRST TIME IF NEEDED
	458	# ------------------------------------------------------------------
	459	IGCM_comp_GetInputBinaryFiles
	460
	461	# ------------------------------------------------------------------
[815]	462	# Test if all was right before Update
[785]	463	# ------------------------------------------------------------------
	464	IGCM_debug_Verif_Exit
[2]	465
[815]	466	#D-
[785]	467	# ------------------------------------------------------------------
[1409]	468	#D- 4.10 ACTIVATE RUNNING ENVIRONNEMENT VARIABLES
	469	#D- - including module load associated to compiler & tools
	470	#D- - .env_intel17.0.2_curie
	471	#D- - .env_netcdf4.3.3.1_curie
[785]	472	# ------------------------------------------------------------------
	473	IGCM_sys_activ_variables
[2]	474
[785]	475	#D-
	476	# ------------------------------------------------------------------
[1409]	477	#D- 4.11 UPDATE ParametersFiles
[815]	478	#D- - (.def, namelist ...)
	479	#D- - with current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...)
[785]	480	# ------------------------------------------------------------------
	481	IGCM_comp_Update
	482
	483	# ------------------------------------------------------------------
[815]	484	# Test if all was right before execution
[785]	485	# ------------------------------------------------------------------
	486	IGCM_debug_Verif_Exit
	487
[1492]	488	#-Q- jeanzay # Workaround at Jean-Zay
	489	#-Q- jeanzay source $I_MPI_ROOT/intel64/bin/mpivars.sh release_mt
	490
[785]	491	#D-
[815]	492	#D---------------------------------------------------------------------==
	493	#D- 5. EXECUTION
	494	#D---------------------------------------------------------------------==
[785]	495
	496	echo
	497	echo "#######################################"
	498	echo "# DIR BEFORE RUN EXECUTION #"
	499	echo "#######################################"
	500	echo
	501	ls -lrt
	502
	503	echo "========================================================================"
	504	if [ ${DRYRUN} -le 1 ] ; then
	505	REAL_DATE_INIT=$( date )
	506	echo > ${Exe_Output}
	507	echo "#######################################" >> ${Exe_Output}
	508	echo "EXECUTION of : ${EXECUTION}"
	509	echo "EXECUTION of : ${EXECUTION}" >> ${Exe_Output}
	510	echo >> ${Exe_Output}
	511	typeset RET
	512	RUN_DATE_BEGIN=$( date '+%Y-%m-%dT%H:%M:%S' )
	513	${EXECUTION} >> ${Exe_Output} 2>&1
	514	RET=$?
	515	RUN_DATE_END=$( date '+%Y-%m-%dT%H:%M:%S' )
	516	if [ ${RET} -gt 0 ] ; then
	517	echo "Return code of executable :" ${RET}
	518	IGCM_debug_Exit "EXECUTABLE"
	519	IGCM_sys_Mkdir ${SUBMIT_DIR}/Debug
	520	IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/Debug/${PREFIX}_${Exe_Output}_error
	521	ExecutionFail=true
[2]	522	fi
[785]	523	echo >> ${Exe_Output}
	524	echo "#######################################" >> ${Exe_Output}
	525	echo "libIGCM RunDateBegin=${RUN_DATE_BEGIN}" >> ${Exe_Output}
	526	echo "libIGCM RunDateEnd=${RUN_DATE_END}" >> ${Exe_Output}
	527	echo >> ${Exe_Output}
	528	else
	529	echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN
	530	echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN > ${Exe_Output}
	531	if ( $DEBUG_debug ) ; then
	532	echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack
	533	fi
	534	fi
	535	echo "========================================================================"
[2]	536
[785]	537	echo
	538	echo "#######################################"
	539	echo "# DIR AFTER RUN EXECUTION #"
	540	echo "#######################################"
	541	echo
	542	ls -lrt
[2]	543
[785]	544	#D-
[815]	545	#D---------------------------------------------------------------------==
	546	#D- 6. POST EXECUTION OPERATIONS
	547	#D---------------------------------------------------------------------==
	548
	549	#D-
[785]	550	# ------------------------------------------------------------------
[815]	551	#D- 6.1. DESACTIVATE RUNNING ENVIRONNEMENT VARIABLES
[785]	552	# ------------------------------------------------------------------
	553	IGCM_sys_desactiv_variables
[2]	554
[785]	555	#D-
	556	# ------------------------------------------------------------------
[815]	557	#D- 6.2. SAVE OUTPUTS
	558	#D- - On archive/storage machine
	559	#D- - netcdf outputs, restarts and text files of models
[785]	560	# ------------------------------------------------------------------
	561	IGCM_comp_Finalize
[2]	562
[785]	563	# ------------------------------------------------------------------
[815]	564	# Test if all was right after Finalize
[785]	565	# ------------------------------------------------------------------
	566	IGCM_debug_Verif_Exit
[2]	567
[785]	568	#D-
	569	# ------------------------------------------------------------------
[815]	570	#D- 6.3. CONFIGURE POST-PROCESSING
	571	#D- - asynchronous post-treatment (Level 0) when necessary (rebuild/pack)
	572	#D- - classic post-treatment (Level 1) when necessary (TimeSeries/Seasonal)
[785]	573	# ------------------------------------------------------------------
	574	IGCM_post_Configure
[2]	575
[785]	576	#D-
	577	# ------------------------------------------------------------------
[815]	578	#D- 6.4. SUBMIT POST-PROCESSING
	579	#D- - remote rebuild or/and post-treatment process if necessary
[785]	580	# ------------------------------------------------------------------
	581	IGCM_post_Submit
[380]	582
[785]	583	#D-
	584	# ------------------------------------------------------------------
[815]	585	#D- 6.5. FINALYZE CURRENT LOOP AND PREPARE NEXT ONE
	586	#D- - Manage executable size to save only different binary
	587	#D- - Write in run.card user, system and elapse time
	588	#D- - Check that everything went well ! No ? then we stop.
	589	#D- - Determine next computed period
[785]	590	# ------------------------------------------------------------------
	591	IGCM_config_PeriodEnd
[2]	592
[785]	593	echo "Ending iteration ${Period}"
	594	(( Period = Period + 1 ))
[2]	595
[785]	596	# End loop if date end is reached
	597	if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then
	598	break ;
	599	fi
[2]	600
[785]	601	PeriodContinue=false
	602	if [ ${Period} -le ${PeriodNb} ]; then
	603	PeriodContinue=true
	604	fi
	605	done
[2]	606
	607	#D-
[815]	608	#D---------------------------------------------------------------------==
	609	#D- 7. SUBMIT NEXT JOB OR SEND MAIL IF SIMULATION IS OVER.
	610	#D---------------------------------------------------------------------==
[2]	611	IGCM_config_Finalize
	612
	613	date

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