| [704] | 1 | #-Q- curie #!/bin/ksh |
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| [619] | 2 | #-Q- curie ###################### |
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| 3 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 4 | #-Q- curie ###################### |
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| [1030] | 5 | #-Q- curie #MSUB -r ::Jobname:: # Job Name |
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| 6 | #-Q- curie #MSUB -o Script_Output_::Jobname::.000001 # standard output |
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| 7 | #-Q- curie #MSUB -e Script_Output_::Jobname::.000001 # error output |
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| [619] | 8 | #-Q- curie #MSUB -eo |
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| [1149] | 9 | #-Q- curie #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case) |
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| [1238] | 10 | #-Q- curie #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD |
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| 11 | #-Q- curie #MSUB -x # exclusive node. To specify only for MPMD together with the one below |
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| 12 | #-Q- curie #MSUB -E '--cpu_bind=none' |
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| [1389] | 13 | #-Q- curie ##MSUB -E '--distribution cyclic' |
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| [1030] | 14 | #-Q- curie #MSUB -T 86400 # Wall clock limit (seconds) |
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| 15 | #-Q- curie #MSUB -q standard # thin nodes |
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| [837] | 16 | #-Q- curie #MSUB -A ::default_project:: |
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| [1108] | 17 | #-Q- curie # Below specific options that can be activated |
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| 18 | #-Q- curie ##MSUB -q ivybridge # Option for Airain |
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| 19 | #-Q- curie |
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| [619] | 20 | #-Q- curie BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC |
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| [681] | 21 | #-Q- curie set +x |
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| [770] | 22 | #-Q- ada #!/bin/ksh |
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| 23 | #-Q- ada # ###################### |
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| [929] | 24 | #-Q- ada # ## ADA IDRIS ## |
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| [770] | 25 | #-Q- ada # ###################### |
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| [1108] | 26 | #-Q- ada # Job name |
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| [770] | 27 | #-Q- ada # @ job_name = ::Jobname:: |
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| [1108] | 28 | #-Q- ada # Standard output file name |
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| [770] | 29 | #-Q- ada # @ output = Script_Output_::Jobname::.000001 |
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| [1108] | 30 | #-Q- ada # Error output file name |
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| [770] | 31 | #-Q- ada # @ error = Script_Output_::Jobname::.000001 |
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| [1240] | 32 | #-Q- ada # Job type |
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| 33 | #-Q- ada # @ job_type = parallel |
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| [1108] | 34 | #-Q- ada # Total number of tasks |
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| [770] | 35 | #-Q- ada # @ total_tasks = ::JobNumProcTot:: |
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| [1240] | 36 | #-Q- ada # Specific option for OpenMP parallelization: Number of OpenMP threads per MPI task |
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| 37 | #-Q- ada # @ parallel_threads = ::openMPthreads:: |
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| [1247] | 38 | #-Q- ada # Memory : as_limit=3.5gb max per process per core. With 4 threads per process use max as_limit=14gb |
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| 39 | #-Q- ada # @ as_limit = 3.5gb |
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| [1108] | 40 | #-Q- ada # Maximum CPU time per task hh:mm:ss |
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| [770] | 41 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
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| [1240] | 42 | #-Q- ada # @ environment = "BATCH_NUM_PROC_TOT=::JobNumProcTot::" ; wall_clock_limit=$(wall_clock_limit) |
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| [1108] | 43 | #-Q- ada # End of the header options |
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| [770] | 44 | #-Q- ada # @ queue |
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| [281] | 45 | #-Q- lxiv8 ###################### |
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| 46 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 47 | #-Q- lxiv8 ###################### |
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| 48 | #-Q- lxiv8 #PBS -N ::Jobname:: |
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| 49 | #-Q- lxiv8 #PBS -m a |
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| 50 | #-Q- lxiv8 #PBS -j oe |
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| [1126] | 51 | #-Q- lxiv8 #PBS -q mediump |
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| [281] | 52 | #-Q- lxiv8 #PBS -o Script_Output_::Jobname::.000001 |
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| 53 | #-Q- lxiv8 #PBS -S /bin/ksh |
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| 54 | #-Q- lxiv8 #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 55 | #-Q- lxiv8 #PBS -l nodes=1:ppn=::JobNumProcTot:: |
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| [1184] | 56 | #-Q- ifort_CICLAD ###################### |
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| 57 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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| 58 | #-Q- ifort_CICLAD ###################### |
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| 59 | #-Q- ifort_CICLAD #PBS -N ::Jobname:: |
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| 60 | #-Q- ifort_CICLAD #PBS -m a |
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| 61 | #-Q- ifort_CICLAD #PBS -j oe |
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| [1314] | 62 | #-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only |
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| [1184] | 63 | #-Q- ifort_CICLAD #PBS -o Script_Output_::Jobname::.000001 |
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| 64 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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| 65 | #-Q- ifort_CICLAD #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 66 | #-Q- ifort_CICLAD #PBS -l nodes=1:ppn=::JobNumProcTot:: |
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| [1291] | 67 | #-Q- ifort_CICLAD #PBS -l mem=6gb |
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| [1292] | 68 | #-Q- ifort_CICLAD #PBS -l vmem=30gb |
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| [2] | 69 | #-Q- default #!/bin/ksh |
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| 70 | #-Q- default ################## |
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| 71 | #-Q- default ## DEFAULT HOST ## |
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| 72 | #-Q- default ################## |
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| [815] | 73 | #-Q- default #For MPI use, uncomment next line : |
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| [2] | 74 | #-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 75 | |
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| [373] | 76 | #************************************************************** |
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| 77 | # Author: Sebastien Denvil |
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| 78 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 79 | # $Revision:: $ Revision of last commit |
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| 80 | # $Author:: $ Author of last commit |
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| 81 | # $Date:: $ Date of last commit |
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| [2] | 82 | # IPSL (2006) |
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| 83 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| [373] | 84 | # |
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| 85 | #************************************************************** |
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| [2] | 86 | |
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| 87 | #set -eu |
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| 88 | #set -vx |
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| 89 | |
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| 90 | date |
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| 91 | echo |
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| 92 | echo "#######################################" |
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| 93 | echo "# ANOTHER GREAT SIMULATION #" |
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| 94 | echo "#######################################" |
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| 95 | echo |
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| 96 | |
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| 97 | #D--------------------------------------------------------------------== |
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| 98 | #D- |
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| 99 | #D- Job to launch IGCM models |
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| 100 | #D- |
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| 101 | #D--------------------------------------------------------------------== |
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| 102 | #D- |
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| 103 | |
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| 104 | MODIPSL=::modipsl:: |
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| 105 | libIGCM=${MODIPSL}/libIGCM |
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| 106 | |
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| 107 | #D--------------------------------------------------------------------== |
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| [815] | 108 | #D- -1. PLACE FOR USER MODIFICATION |
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| 109 | #D- - Job Verbosity |
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| 110 | #D- - PeriodNb |
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| 111 | #D- - Experience type : DEB(ug), DEV(elopment), RUN |
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| [2] | 112 | #D--------------------------------------------------------------------== |
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| 113 | |
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| [1356] | 114 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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| [815] | 115 | TaskType=computing |
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| [1301] | 116 | |
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| [2] | 117 | #D- Increased verbosity (1, 2, 3) |
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| 118 | Verbosity=3 |
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| [1301] | 119 | |
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| [1282] | 120 | #D- postProcessingStopLevel (0,1,2,3) |
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| [1301] | 121 | #D- 3 stop the main job if any post-processing went wrong (atlas, monitoring, metrics, create_ts, create_se, rebuild or pack_*) |
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| 122 | #D- 2 stop only if create_ts, create_se or pack_* failed (dont stop if atlas, monitoring or metrics failed) |
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| 123 | #D- 1 stop only if pack_* failed (dont stop if atlas, monitoring, metrics, create_ts or create_se failed) |
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| 124 | #D- 0 never stop the main job for post-processing that went wrong |
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| 125 | postProcessingStopLevel=1 |
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| 126 | |
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| [475] | 127 | #D- Experience type : DEB(ug), DEV(elopment), RUN (default) |
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| [1282] | 128 | #D- DEB : set -vx mode + output files are NOT read only |
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| 129 | #D- DEV : output files are NOT read only |
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| 130 | #D- RUN : output files ARE read only |
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| [475] | 131 | JobType=RUN |
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| [1301] | 132 | |
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| [2] | 133 | #D- Number of execution in one job |
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| [185] | 134 | PeriodNb=1 |
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| [2] | 135 | |
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| 136 | #D- |
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| [815] | 137 | #D- --------------------------------------------------------------------------------------------------# |
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| 138 | #D- ! OPTIONNAL FEATURES /!\ USE WITH CARE ! # |
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| 139 | #D- --------------------------------------------------------------------------------------------------# |
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| [2] | 140 | |
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| [475] | 141 | |
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| [1096] | 142 | #D- Low level debug : to perform lib test checks, stack construction and IO functions instrumentation |
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| [2] | 143 | #D- Default=true |
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| [815] | 144 | #D- |
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| [1095] | 145 | DEBUG_debug=true |
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| [2] | 146 | |
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| [988] | 147 | #D- Messaging : all activities and call stacks will be sent to ipsl servers |
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| 148 | #D- If true will imply DEBUG_debug=true |
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| 149 | #D- Default=false |
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| 150 | #D- |
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| [1095] | 151 | BigBrother=true |
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| [988] | 152 | |
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| [2] | 153 | #D- Set DEBUG_sys to false to disable output calls of function |
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| [988] | 154 | #D- true when JobType=DEB # means DEB(ug) |
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| [815] | 155 | #D- |
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| [2] | 156 | #DEBUG_sys=false |
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| 157 | |
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| 158 | #D- Define running directory |
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| 159 | #D- Default=${TMPDIR} ie temporary batch directory |
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| [815] | 160 | #D- |
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| [154] | 161 | #RUN_DIR_PATH=/workdir/or/scratchdir/of/this/machine |
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| [2] | 162 | |
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| 163 | #D- Define submit directory |
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| [92] | 164 | #D- Default= where you launch qsub (variable from scheduler) |
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| [815] | 165 | #D- |
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| [92] | 166 | #SUBMIT_DIR=$( pwd ) |
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| [2] | 167 | |
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| [475] | 168 | #D- Define input file root directory |
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| 169 | #D- Default=/IGCMG/common/account/of/this/machine |
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| [1373] | 170 | #D- IPSL: /prodigfs/ipslfs/igcmg/IGCM |
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| 171 | #D- TGCC: /ccc/work/cont003/igcmg/igcmg/IGCM |
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| 172 | #D- IDRIS: /workgpfs/rech/psl/rpsl035/IGCM |
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| 173 | #D- OBELIX: /home/orchideeshare/igcmg/IGCM |
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| 174 | #D- OTHER: /home/${LOGIN}/IGCM |
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| 175 | |
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| 176 | #D- Change below to override the default |
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| [475] | 177 | #R_IN=/u/rech/por/rpor111/DATA |
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| 178 | |
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| [2] | 179 | #D- Turn in dry run mode ? (0,1,2,3) |
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| 180 | #D- Default=0 |
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| [815] | 181 | #D- |
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| [2] | 182 | #DRYRUN=3 |
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| [815] | 183 | #D-# YOU HAVE TO COMPILE YOUR EXE FILES to USE DRYRUN MODE ! |
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| 184 | #D-# ------------------------------------------------------------------------------------- |
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| 185 | #D-# | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 186 | #D-# | | Cp/Exe/param/files | | | | |
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| 187 | #D-# | | Chmod Qsub | | | | |
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| 188 | #D-# ------------------------------------------------------------------------------------- |
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| 189 | #D-# | 0 | yes | yes | yes | yes | |
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| 190 | #D-# ------------------------------------------------------------------------------------- |
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| 191 | #D-# | 1 | yes | yes | yes | no | |
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| 192 | #D-# ------------------------------------------------------------------------------------- |
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| 193 | #D-# | 2 | yes | yes | no | no | |
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| 194 | #D-# ------------------------------------------------------------------------------------- |
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| 195 | #D-# | 3 | yes | no | no | no | |
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| 196 | #D-# ------------------------------------------------------------------------------------- |
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| [2] | 197 | |
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| [475] | 198 | #D- |
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| 199 | # --------------------------------------------------------------------------------------------------# |
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| [815] | 200 | #D- ! END OF OPTIONNAL FEATURES /!\ DO NOT MODIFY ANYTHING BELOW UNLESS YOU KNOW WHAT YOU ARE DOING # |
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| [475] | 201 | # --------------------------------------------------------------------------------------------------# |
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| [2] | 202 | |
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| 203 | #D- |
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| 204 | #D--------------------------------------------------------------------== |
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| [1051] | 205 | #D- 0.0 SYSTEM ENVIRONMENT |
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| 206 | #D- - Define variables for Number of processors |
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| 207 | #D- - Define MPI variables |
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| 208 | #D- - Define batch scheduler variables |
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| 209 | #D- - Source IGCM Library |
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| 210 | #D- - Get RESOLution in .resol file (temporary) |
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| [2] | 211 | #D--------------------------------------------------------------------== |
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| 212 | |
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| [815] | 213 | #---------------------------------------------------------------------== |
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| [2] | 214 | |
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| 215 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 216 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 217 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 218 | #------- |
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| 219 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 220 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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| 221 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
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| 222 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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| [832] | 223 | #------- |
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| 224 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 225 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 226 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| [2] | 227 | |
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| [815] | 228 | #--------------------------------------------------------------------== |
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| [2] | 229 | |
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| 230 | #-- Resolution FLAG for oasis input |
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| [511] | 231 | #RESOL="ORCA2xLMD9671" |
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| [138] | 232 | [ -f ${SUBMIT_DIR}/../.resol ] && RESOL=$(head -1 ${SUBMIT_DIR}/../.resol) |
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| [511] | 233 | #-- Chemistrie FLAG to ease chemistries configurations management |
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| 234 | #CHEM="AER" |
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| [815] | 235 | [ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie) |
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| [2] | 236 | |
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| 237 | #D- |
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| 238 | #D--------------------------------------------------------------------== |
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| [1051] | 239 | #D- 0.1 COMMON ENVIRONMENT |
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| 240 | #D- - Read libIGCM compatibility version in config.card |
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| 241 | #D- - Read UserChoices section |
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| 242 | #D- - Read Ensemble section |
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| 243 | #D- - Read Post section |
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| 244 | #D- - Define all netcdf output directories |
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| 245 | #D--------------------------------------------------------------------== |
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| 246 | IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card |
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| 247 | |
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| [1053] | 248 | if [ ! -r ${SUBMIT_DIR}/run.card ] ; then |
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| 249 | #================================================# |
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| 250 | # The file run.card doesn't exist # |
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| 251 | #================================================# |
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| 252 | FirstInitialize=true |
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| 253 | #copy initial run.card |
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| 254 | IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card |
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| 255 | IGCM_debug_Print 2 "run.card copied from run.card.init" |
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| 256 | else |
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| 257 | FirstInitialize=false |
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| 258 | IGCM_debug_Print 2 "run.card exists" |
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| 259 | fi |
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| 260 | |
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| [1051] | 261 | # ------------------------------------------------------------------ |
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| 262 | # Activate BigBrother so as to supervise this simulation |
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| 263 | # ------------------------------------------------------------------ |
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| [1189] | 264 | IGCM_debug_BigBro_Initialize |
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| [1051] | 265 | |
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| 266 | #D- |
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| 267 | #D--------------------------------------------------------------------== |
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| [815] | 268 | #D- 1. INITIALIZE CONFIGURATION |
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| 269 | #D- - Simulation configuration |
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| 270 | #D- - Simulation parameters |
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| 271 | #D- - Execution parameter |
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| 272 | #D- - Define input files directory |
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| 273 | #D- - Read or initialize CumulPeriod |
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| 274 | #D- - run.card |
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| [1051] | 275 | #D--------------------------------------------------------------------== |
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| [2] | 276 | IGCM_config_Initialize |
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| 277 | |
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| 278 | # --------------------------------------------------------------------== |
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| [815] | 279 | # Define, create and cd RUN_DIR |
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| [2] | 280 | # --------------------------------------------------------------------== |
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| [804] | 281 | RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$} |
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| [2] | 282 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 283 | IGCM_sys_Cd ${RUN_DIR} |
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| 284 | |
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| [436] | 285 | # ------------------------------------------------------------------ |
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| 286 | # Test if all was right before proceeding further |
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| 287 | # ------------------------------------------------------------------ |
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| [432] | 288 | IGCM_debug_Verif_Exit |
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| 289 | |
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| [2] | 290 | #D- |
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| [815] | 291 | #D---------------------------------------------------------------------== |
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| 292 | #D- 2. INITIALIZE ALL COMPONENT OF THE CONFIGURATION |
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| 293 | #D- - Define component executable |
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| 294 | #D- - Define Write Frequency by component "1M" "1D" ... |
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| 295 | #D- - Source ${comp}.driver |
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| 296 | #D- - Define Storage Places by component |
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| 297 | #D- - ${comp}_Initialize : |
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| 298 | #D- - Patterns to sed |
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| 299 | #D- - Variables from namelist |
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| 300 | #D---------------------------------------------------------------------== |
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| [2] | 301 | IGCM_comp_Initialize |
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| 302 | |
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| [815] | 303 | #D- |
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| 304 | #D---------------------------------------------------------------------== |
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| 305 | #D- 3. PERFORM GENERAL VERIFICATION |
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| 306 | #D- - Verify compatibility of period length, write frequencies, ... |
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| 307 | #D- - Verify compatibility of rebuild choices and post-process choices |
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| 308 | #D- - Will stop here if something is wrong |
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| 309 | #D---------------------------------------------------------------------== |
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| [380] | 310 | IGCM_config_Check |
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| [2] | 311 | |
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| [380] | 312 | # ------------------------------------------------------------------ |
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| [815] | 313 | # Test if all was right before entering the period loop |
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| [380] | 314 | # ------------------------------------------------------------------ |
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| 315 | IGCM_debug_Verif_Exit |
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| 316 | |
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| [815] | 317 | #D- |
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| 318 | #D---------------------------------------------------------------------== |
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| 319 | #D- 4. ENTER THE DEEP EXECUTION LOOP |
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| 320 | #D- ! FASTEN YOUR SEAT BELTS PLEASE. ! |
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| 321 | #D- ! WE WILL CROSS TURBULENCES. ! |
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| 322 | #D---------------------------------------------------------------------== |
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| [2] | 323 | |
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| 324 | Period=1 |
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| 325 | |
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| [120] | 326 | PeriodContinue=false |
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| 327 | if [ ${Period} -le ${PeriodNb} ]; then |
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| [815] | 328 | PeriodContinue=true |
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| [120] | 329 | fi |
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| 330 | while ( ${PeriodContinue} ) ; do |
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| 331 | |
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| [785] | 332 | echo |
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| 333 | echo "Starting iteration ${Period} / ${PeriodNb}" |
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| [2] | 334 | |
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| [785] | 335 | #D- |
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| 336 | # ------------------------------------------------------------------ |
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| [815] | 337 | #D- 4.1 COMPUTE AND DEFINE DATE INFORMATION. |
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| 338 | #D- - ${PeriodDateBegin} |
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| 339 | #D- - ${PeriodDateEnd} |
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| 340 | #D- - ${CumulPeriod} |
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| 341 | #D- - ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd} |
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| 342 | #D- - ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0 |
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| 343 | #D- - update run.card value |
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| [785] | 344 | # ------------------------------------------------------------------ |
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| 345 | IGCM_config_PeriodStart |
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| [2] | 346 | |
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| [785] | 347 | #D- |
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| 348 | # ------------------------------------------------------------------ |
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| [815] | 349 | #D- 4.2 BEGIN COMPUTATION ONLY IF NEEDED |
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| [785] | 350 | # ------------------------------------------------------------------ |
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| 351 | if [ ${SimulationLengthInDays} -gt ${ExperienceLengthInDays} ] ; then |
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| [1351] | 352 | IGCM_debug_Print 1 "break because '\${SimulationLengthInDays} -gt \${ExperienceLengthInDays}' : ${SimulationLengthInDays} -gt ${ExperienceLengthInDays}" |
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| [785] | 353 | break ; |
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| 354 | fi |
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| [2] | 355 | |
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| [785] | 356 | #D- |
|---|
| 357 | # ------------------------------------------------------------------ |
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| [815] | 358 | #D- 4.3 CALL OPTIONNAL FUNCTION WITHIN DRIVER |
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| 359 | #D- - to set special variables used in lists (Param, Init or Bc). |
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| [785] | 360 | # ------------------------------------------------------------------ |
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| 361 | IGCM_comp_PeriodStart |
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| [2] | 362 | |
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| [785] | 363 | #D- |
|---|
| 364 | # ------------------------------------------------------------------ |
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| [815] | 365 | #D- 4.4 GET PARAMETERS TEXT FILES UPDATED BY JOB |
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| 366 | #D- - (.def, namelist ...) |
|---|
| 367 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
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| [785] | 368 | # ------------------------------------------------------------------ |
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| 369 | IGCM_comp_GetInputParametersFiles |
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| [262] | 370 | |
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| [785] | 371 | #D- |
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| 372 | # ------------------------------------------------------------------ |
|---|
| [815] | 373 | #D- 4.5 GET INITIAL STATE |
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| 374 | #D- - (Etat0, carteveg,relief...) |
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| 375 | #D- - NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1 |
|---|
| 376 | #D- - AND ???_Restart=NO |
|---|
| 377 | #D- - READ AND USE BY GCM FOR ONLY ONE EXECUTION. |
|---|
| [785] | 378 | # ------------------------------------------------------------------ |
|---|
| 379 | IGCM_comp_GetInputInitialStateFiles |
|---|
| [2] | 380 | |
|---|
| [785] | 381 | #D- |
|---|
| 382 | # ------------------------------------------------------------------ |
|---|
| [815] | 383 | #D- 4.6 GET BOUNDARIES CONDITIONS |
|---|
| 384 | #D- - (SST, WIND[X,Y,Z], LAI ...) |
|---|
| 385 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
|---|
| [785] | 386 | # ------------------------------------------------------------------ |
|---|
| 387 | IGCM_comp_GetInputBoundaryFiles |
|---|
| [2] | 388 | |
|---|
| [785] | 389 | #D- |
|---|
| 390 | # ------------------------------------------------------------------ |
|---|
| [815] | 391 | #D- 4.7 GET SmoothFiles CONDITIONS |
|---|
| 392 | #D- - (SST, WIND[X,Y,Z], LAI ...) |
|---|
| 393 | #D- - READ AND USE BY GCM AT EACH EXECUTION |
|---|
| 394 | #D- - Do not change at each ${Period} |
|---|
| [785] | 395 | # ------------------------------------------------------------------ |
|---|
| [815] | 396 | IGCM_comp_GetInputSmoothFiles |
|---|
| [2] | 397 | |
|---|
| [785] | 398 | #D- |
|---|
| 399 | # ------------------------------------------------------------------ |
|---|
| [815] | 400 | #D- 4.8 GET RESTART FILES |
|---|
| 401 | #D- - (restartphy.nc, orca_restart.nc ...) |
|---|
| 402 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
|---|
| [785] | 403 | #D- |
|---|
| [815] | 404 | #D- - IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART |
|---|
| 405 | #D- - ONLY IF CumulPeriod= (=> NUMERO) == 1 |
|---|
| 406 | #D- - MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e) |
|---|
| [785] | 407 | #D- |
|---|
| [815] | 408 | #D- - IF CumulPeriod == 1 |
|---|
| 409 | #D- - AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART |
|---|
| 410 | #D- - MUST BRING THIS RESTART IN ${RUN_DIR_PATH} |
|---|
| [785] | 411 | #D- |
|---|
| [815] | 412 | #D- - ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH} |
|---|
| [785] | 413 | # ------------------------------------------------------------------ |
|---|
| 414 | IGCM_comp_GetInputRestartFiles |
|---|
| [2] | 415 | |
|---|
| [785] | 416 | # ------------------------------------------------------------------ |
|---|
| [1409] | 417 | #D- 4.9 GET BINARY FILES |
|---|
| 418 | #D- - USED BY AT EACH EXECUTION. |
|---|
| 419 | #D- - CHECK BINARIES HAS BEEN COMPILED WITH THE SAME COMPILER |
|---|
| 420 | #D- - RELOAD THE APPROPRIATE ENVIRONMENT THE FIRST TIME IF NEEDED |
|---|
| 421 | # ------------------------------------------------------------------ |
|---|
| 422 | IGCM_comp_GetInputBinaryFiles |
|---|
| 423 | |
|---|
| 424 | # ------------------------------------------------------------------ |
|---|
| [815] | 425 | # Test if all was right before Update |
|---|
| [785] | 426 | # ------------------------------------------------------------------ |
|---|
| 427 | IGCM_debug_Verif_Exit |
|---|
| [2] | 428 | |
|---|
| [815] | 429 | #D- |
|---|
| [785] | 430 | # ------------------------------------------------------------------ |
|---|
| [1409] | 431 | #D- 4.10 ACTIVATE RUNNING ENVIRONNEMENT VARIABLES |
|---|
| 432 | #D- - including module load associated to compiler & tools |
|---|
| 433 | #D- - .env_intel17.0.2_curie |
|---|
| 434 | #D- - .env_netcdf4.3.3.1_curie |
|---|
| [785] | 435 | # ------------------------------------------------------------------ |
|---|
| 436 | IGCM_sys_activ_variables |
|---|
| [2] | 437 | |
|---|
| [785] | 438 | #D- |
|---|
| 439 | # ------------------------------------------------------------------ |
|---|
| [1409] | 440 | #D- 4.11 UPDATE ParametersFiles |
|---|
| [815] | 441 | #D- - (.def, namelist ...) |
|---|
| 442 | #D- - with current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...) |
|---|
| [785] | 443 | # ------------------------------------------------------------------ |
|---|
| 444 | IGCM_comp_Update |
|---|
| 445 | |
|---|
| 446 | # ------------------------------------------------------------------ |
|---|
| [815] | 447 | # Test if all was right before execution |
|---|
| [785] | 448 | # ------------------------------------------------------------------ |
|---|
| 449 | IGCM_debug_Verif_Exit |
|---|
| 450 | |
|---|
| 451 | #D- |
|---|
| [815] | 452 | #D---------------------------------------------------------------------== |
|---|
| 453 | #D- 5. EXECUTION |
|---|
| 454 | #D---------------------------------------------------------------------== |
|---|
| [785] | 455 | |
|---|
| 456 | echo |
|---|
| 457 | echo "#######################################" |
|---|
| 458 | echo "# DIR BEFORE RUN EXECUTION #" |
|---|
| 459 | echo "#######################################" |
|---|
| 460 | echo |
|---|
| 461 | ls -lrt |
|---|
| 462 | |
|---|
| 463 | echo "========================================================================" |
|---|
| 464 | if [ ${DRYRUN} -le 1 ] ; then |
|---|
| 465 | REAL_DATE_INIT=$( date ) |
|---|
| 466 | echo > ${Exe_Output} |
|---|
| 467 | echo "#######################################" >> ${Exe_Output} |
|---|
| 468 | echo "EXECUTION of : ${EXECUTION}" |
|---|
| 469 | echo "EXECUTION of : ${EXECUTION}" >> ${Exe_Output} |
|---|
| 470 | echo >> ${Exe_Output} |
|---|
| 471 | typeset RET |
|---|
| 472 | RUN_DATE_BEGIN=$( date '+%Y-%m-%dT%H:%M:%S' ) |
|---|
| 473 | ${EXECUTION} >> ${Exe_Output} 2>&1 |
|---|
| 474 | RET=$? |
|---|
| 475 | RUN_DATE_END=$( date '+%Y-%m-%dT%H:%M:%S' ) |
|---|
| 476 | if [ ${RET} -gt 0 ] ; then |
|---|
| 477 | echo "Return code of executable :" ${RET} |
|---|
| 478 | IGCM_debug_Exit "EXECUTABLE" |
|---|
| 479 | IGCM_sys_Mkdir ${SUBMIT_DIR}/Debug |
|---|
| 480 | IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/Debug/${PREFIX}_${Exe_Output}_error |
|---|
| 481 | ExecutionFail=true |
|---|
| [2] | 482 | fi |
|---|
| [785] | 483 | echo >> ${Exe_Output} |
|---|
| 484 | echo "#######################################" >> ${Exe_Output} |
|---|
| 485 | echo "libIGCM RunDateBegin=${RUN_DATE_BEGIN}" >> ${Exe_Output} |
|---|
| 486 | echo "libIGCM RunDateEnd=${RUN_DATE_END}" >> ${Exe_Output} |
|---|
| 487 | echo >> ${Exe_Output} |
|---|
| 488 | else |
|---|
| 489 | echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN |
|---|
| 490 | echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN > ${Exe_Output} |
|---|
| 491 | if ( $DEBUG_debug ) ; then |
|---|
| 492 | echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack |
|---|
| 493 | fi |
|---|
| 494 | fi |
|---|
| 495 | echo "========================================================================" |
|---|
| [2] | 496 | |
|---|
| [785] | 497 | echo |
|---|
| 498 | echo "#######################################" |
|---|
| 499 | echo "# DIR AFTER RUN EXECUTION #" |
|---|
| 500 | echo "#######################################" |
|---|
| 501 | echo |
|---|
| 502 | ls -lrt |
|---|
| [2] | 503 | |
|---|
| [785] | 504 | #D- |
|---|
| [815] | 505 | #D---------------------------------------------------------------------== |
|---|
| 506 | #D- 6. POST EXECUTION OPERATIONS |
|---|
| 507 | #D---------------------------------------------------------------------== |
|---|
| 508 | |
|---|
| 509 | #D- |
|---|
| [785] | 510 | # ------------------------------------------------------------------ |
|---|
| [815] | 511 | #D- 6.1. DESACTIVATE RUNNING ENVIRONNEMENT VARIABLES |
|---|
| [785] | 512 | # ------------------------------------------------------------------ |
|---|
| 513 | IGCM_sys_desactiv_variables |
|---|
| [2] | 514 | |
|---|
| [785] | 515 | #D- |
|---|
| 516 | # ------------------------------------------------------------------ |
|---|
| [815] | 517 | #D- 6.2. SAVE OUTPUTS |
|---|
| 518 | #D- - On archive/storage machine |
|---|
| 519 | #D- - netcdf outputs, restarts and text files of models |
|---|
| [785] | 520 | # ------------------------------------------------------------------ |
|---|
| 521 | IGCM_comp_Finalize |
|---|
| [2] | 522 | |
|---|
| [785] | 523 | # ------------------------------------------------------------------ |
|---|
| [815] | 524 | # Test if all was right after Finalize |
|---|
| [785] | 525 | # ------------------------------------------------------------------ |
|---|
| 526 | IGCM_debug_Verif_Exit |
|---|
| [2] | 527 | |
|---|
| [785] | 528 | #D- |
|---|
| 529 | # ------------------------------------------------------------------ |
|---|
| [815] | 530 | #D- 6.3. CONFIGURE POST-PROCESSING |
|---|
| 531 | #D- - asynchronous post-treatment (Level 0) when necessary (rebuild/pack) |
|---|
| 532 | #D- - classic post-treatment (Level 1) when necessary (TimeSeries/Seasonal) |
|---|
| [785] | 533 | # ------------------------------------------------------------------ |
|---|
| 534 | IGCM_post_Configure |
|---|
| [2] | 535 | |
|---|
| [785] | 536 | #D- |
|---|
| 537 | # ------------------------------------------------------------------ |
|---|
| [815] | 538 | #D- 6.4. SUBMIT POST-PROCESSING |
|---|
| 539 | #D- - remote rebuild or/and post-treatment process if necessary |
|---|
| [785] | 540 | # ------------------------------------------------------------------ |
|---|
| 541 | IGCM_post_Submit |
|---|
| [380] | 542 | |
|---|
| [785] | 543 | #D- |
|---|
| 544 | # ------------------------------------------------------------------ |
|---|
| [815] | 545 | #D- 6.5. FINALYZE CURRENT LOOP AND PREPARE NEXT ONE |
|---|
| 546 | #D- - Manage executable size to save only different binary |
|---|
| 547 | #D- - Write in run.card user, system and elapse time |
|---|
| 548 | #D- - Check that everything went well ! No ? then we stop. |
|---|
| 549 | #D- - Determine next computed period |
|---|
| [785] | 550 | # ------------------------------------------------------------------ |
|---|
| 551 | IGCM_config_PeriodEnd |
|---|
| [2] | 552 | |
|---|
| [785] | 553 | echo "Ending iteration ${Period}" |
|---|
| 554 | (( Period = Period + 1 )) |
|---|
| [2] | 555 | |
|---|
| [785] | 556 | # End loop if date end is reached |
|---|
| 557 | if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then |
|---|
| 558 | break ; |
|---|
| 559 | fi |
|---|
| [2] | 560 | |
|---|
| [785] | 561 | PeriodContinue=false |
|---|
| 562 | if [ ${Period} -le ${PeriodNb} ]; then |
|---|
| 563 | PeriodContinue=true |
|---|
| 564 | fi |
|---|
| 565 | done |
|---|
| [2] | 566 | |
|---|
| 567 | #D- |
|---|
| [815] | 568 | #D---------------------------------------------------------------------== |
|---|
| 569 | #D- 7. SUBMIT NEXT JOB OR SEND MAIL IF SIMULATION IS OVER. |
|---|
| 570 | #D---------------------------------------------------------------------== |
|---|
| [2] | 571 | IGCM_config_Finalize |
|---|
| 572 | |
|---|
| 573 | date |
|---|
