1 | #-Q- platine #!/usr/bin/ksh |
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2 | #-Q- platine ################## |
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3 | #-Q- platine ## PLATINE CEA ## |
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4 | #-Q- platine ################## |
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5 | #-Q- platine #BSUB -J TS # Nom du job |
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6 | #-Q- platine #BSUB -N # message a la fin du job |
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7 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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8 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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9 | #-Q- platine #BSUB -q post # Passage en queue post |
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10 | #-Q- sx8brodie #!/bin/ksh |
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11 | #-Q- sx8brodie ####################### |
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12 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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13 | #-Q- sx8brodie ####################### |
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14 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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15 | #-Q- sx8brodie # @ wall_clock_limit = 10:00:00 |
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16 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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17 | #-Q- sx8brodie # @ job_name = TS |
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18 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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19 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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20 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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21 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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22 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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23 | #-Q- sx8brodie # @ notification = error |
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24 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $MASTER |
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25 | #-Q- aix6 #!/bin/ksh |
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26 | #-Q- aix6 ####################### |
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27 | #-Q- aix6 ## VARGAS IDRIS ## |
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28 | #-Q- aix6 ####################### |
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29 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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30 | #-Q- aix6 # @ wall_clock_limit = 10:00:00 |
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31 | #-Q- aix6 # Nom du travail LoadLeveler |
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32 | #-Q- aix6 # @ job_name = TS |
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33 | #-Q- aix6 # Fichier de sortie standard du travail |
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34 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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35 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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36 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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37 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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38 | #-Q- aix6 # @ notification = error |
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39 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $MASTER |
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40 | #-Q- aix6 # @ queue |
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41 | #-Q- sx8brodie # @ queue |
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42 | #-Q- sx8mercure #!/bin/ksh |
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43 | #-Q- sx8mercure ###################### |
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44 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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45 | #-Q- sx8mercure ###################### |
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46 | #-Q- sx8mercure #PBS -N TS # Nom du job |
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47 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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48 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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49 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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50 | #-Q- sx8mercure #PBS -l cputim_job=2:00:00 # Limite temps a 2 heures |
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51 | #-Q- sx8mercure #PBS -q scalaire |
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52 | #-Q- default #!/bin/ksh |
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53 | #-Q- default ################## |
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54 | #-Q- default ## DEFAULT HOST ## |
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55 | #-Q- default ################## |
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56 | |
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57 | #set -vx |
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58 | |
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59 | date |
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60 | |
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61 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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62 | |
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63 | # $Date$ |
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64 | # $Author$ |
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65 | # $Revision$ |
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66 | # IPSL (2006) |
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67 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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68 | |
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69 | ######################################################################## |
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70 | |
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71 | #D- Flag to determine if this job in a standalone mode |
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72 | #D- Default : value from AA_job if any |
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73 | StandAlone=${StandAlone:=true} |
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74 | |
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75 | #D- Flag to determine job's output directory |
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76 | #D- Default : value from libIGCM_post.ksh if any |
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77 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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78 | |
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79 | #D- Increased verbosity (1, 2, 3) |
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80 | #D- Default : value from AA_job if any |
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81 | Verbosity=${Verbosity:=3} |
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82 | |
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83 | #D- Low level debug : to bypass lib test checks and stack construction |
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84 | #D- Default : value from AA_job if any |
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85 | DEBUG_debug=${DEBUG_debug:=false} |
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86 | |
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87 | #D- Low level debug : to bypass lib test checks and stack construction |
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88 | #D- Default : value from AA_job if any |
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89 | libIGCM=${libIGCM:=/work/cont003/p86denv/PARA_SX8_ORCA2xLMD144142/Prelude/modipsl/libIGCM} |
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90 | |
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91 | #D- TEMPORARY Flag to determine atmospheric resolution |
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92 | #D- Default : value from atmospheric driver if any |
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93 | RESOL_ATM=${RESOL_ATM:=LMD144142} |
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94 | |
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95 | #D- TEMPORARY Flag to determine ocean resolution |
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96 | #D- Default : value from ocean driver if any |
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97 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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98 | |
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99 | #D- TEMPORARY Flag to determine ice resolution |
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100 | #D- Default : value from ice driver if any |
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101 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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102 | |
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103 | #D- Flag to determine surface resolution |
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104 | #D- Default : value from surface driver if any |
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105 | RESOL_SRF=${RESOL_SRF:=LMD144142} |
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106 | |
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107 | ######################################################################## |
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108 | |
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109 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh ; |
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110 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh #; IGCM_debug_Check |
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111 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh #; IGCM_card_Check |
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112 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh #; IGCM_date_Check |
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113 | |
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114 | ######################################################################## |
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115 | |
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116 | #set -vx |
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117 | |
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118 | # Useful cleaning function |
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119 | MENAGE () |
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120 | { |
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121 | [ -f $3 ] & ( rm -f $1/$2 ;) |
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122 | } |
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123 | |
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124 | ######################################################################## |
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125 | |
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126 | #set -vx |
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127 | |
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128 | if [ ${DEBUG_debug} = true ] ; then |
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129 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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130 | echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." |
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131 | fi |
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132 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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133 | |
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134 | if [ ${StandAlone} = true ] ; then |
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135 | CARD_DIR=${SUBMIT_DIR} |
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136 | else |
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137 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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138 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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139 | fi |
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140 | |
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141 | # |
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142 | # First of all |
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143 | # |
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144 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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145 | typeset option |
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146 | for option in ${config_UserChoices[*]} ; do |
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147 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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148 | done |
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149 | # |
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150 | echo |
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151 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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152 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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153 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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154 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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155 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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156 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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157 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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158 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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159 | echo |
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160 | |
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161 | #================================== |
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162 | |
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163 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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164 | # |
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165 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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166 | # |
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167 | # Determine period for time series. Default : value from AA_job if any |
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168 | # |
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169 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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170 | # |
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171 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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172 | |
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173 | ######################################################################## |
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174 | # |
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175 | # Depending on requested time series fill following variables : |
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176 | # |
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177 | # - LISTE_FILE_${comp}[*] |
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178 | # - LISTE_VARS_${file}[*] |
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179 | # - LISTE_AXIS_${file}[*] |
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180 | # - LISTE_PATCH_${file}[*] |
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181 | ######################################################################## |
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182 | |
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183 | # |
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184 | # For each selected component determine which files need post-processing |
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185 | # |
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186 | DoJob=false |
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187 | for comp in ${config_ListOfComponents[*]} ; do |
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188 | # |
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189 | ActiveComp=false |
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190 | # |
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191 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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192 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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193 | # |
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194 | card=${CARD_DIR}/COMP/${compname}.card |
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195 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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196 | # |
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197 | ListFilesName=${compname}_OutputFiles_List |
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198 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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199 | # |
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200 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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201 | # |
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202 | #IGCM_debug_Print 1 "Component : ${compname}" |
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203 | # |
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204 | # INITIALISATION |
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205 | # |
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206 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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207 | typeset i=0 |
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208 | # |
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209 | until [ $i -eq $NbFiles ]; do |
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210 | # |
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211 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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212 | eval file_in=${file_in_} |
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213 | let $(( i_ = i+2 )) |
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214 | eval flag_post_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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215 | eval flag_post=${flag_post_} |
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216 | # |
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217 | if [ X${flag_post} != XNONE ] ; then |
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218 | # |
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219 | # Initialize ${flag_post}_${compname}_${post_freq} |
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220 | # |
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221 | eval export ${flag_post}_${compname}_TimeSeriesFrequency=true |
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222 | fi |
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223 | let $(( i=i+3 )) |
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224 | done |
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225 | fi |
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226 | |
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227 | for element in $( env | grep Post_ | grep ${compname}_TimeSeriesFrequency | grep -i "=true" ) ; do |
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228 | # |
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229 | FILE=$( echo ${element} | awk -F "_${compname}" '{print $1}' | awk "-FPost_" '{print $2}' ) |
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230 | # |
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231 | # For each comp and each file who needs post-processing |
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232 | # determine which variables need time series. |
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233 | # |
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234 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars |
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235 | # |
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236 | if [ $( eval echo \$\{${compname}_Post_${FILE}_TimeSeriesVars} ) = ${NULL_STR} ] ; then |
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237 | # |
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238 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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239 | continue |
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240 | # |
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241 | fi |
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242 | # |
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243 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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244 | # |
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245 | # So we need coordinates axis to properly fill produced time series |
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246 | # |
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247 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
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248 | # |
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249 | if [ $( eval echo \$\{${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
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250 | # |
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251 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
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252 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
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253 | continue |
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254 | # |
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255 | fi |
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256 | # |
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257 | # CREATE LIST |
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258 | # |
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259 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
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260 | case ${FlagDir} in |
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261 | *Y) TS_Dir=TS_YE ;; |
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262 | *M) TS_Dir=TS_MO ;; |
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263 | *D) TS_Dir=TS_DA ;; |
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264 | HF) TS_Dir=TS_HF ;; |
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265 | INS) TS_Dir=TS_INS ;; |
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266 | esac |
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267 | |
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268 | count=0 |
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269 | for var in $( eval echo \$\{${compname}_Post_${FILE}_TimeSeriesVars[*]} ) ; do |
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270 | # |
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271 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
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272 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
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273 | # |
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274 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
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275 | if [ ! $? = 0 ] ; then |
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276 | eval set +A LISTE_VARS_${FILE} \$\{LISTE_VARS_${FILE}[*]} ${var} |
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277 | ActiveComp=true |
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278 | (( count = count + 1 )) |
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279 | fi |
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280 | done |
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281 | |
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282 | if [ ${count} -gt 0 ] ; then |
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283 | # |
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284 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
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285 | eval set +A LISTE_AXIS_${FILE} \$\{${compname}_Post_${FILE}_GatherWithInternal[*]} |
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286 | eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]} |
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287 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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288 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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289 | if [ Xload${Patch} != X ] ; then |
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290 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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291 | eval load${Patch}=loaded |
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292 | fi |
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293 | done |
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294 | fi |
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295 | # |
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296 | fi |
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297 | done |
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298 | |
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299 | if [ ${ActiveComp} = true ] ; then |
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300 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
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301 | fi |
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302 | |
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303 | done |
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304 | |
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305 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
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306 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
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307 | |
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308 | ######################################################################## |
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309 | # |
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310 | # DEFINE DATE FUNCTIONS |
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311 | # |
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312 | ######################################################################## |
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313 | |
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314 | # Give the end of the next $1 period from $2 date |
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315 | function create_ts_next_date { |
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316 | IGCM_debug_PushStack "create_ts_next_date" $@ |
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317 | typeset year month Length |
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318 | case ${config_UserChoices_PeriodLength} in |
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319 | *Y|*y) |
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320 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
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321 | IGCM_date_GetYearMonth ${1} year month |
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322 | (( Length=0 )) |
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323 | (( i=0 )) |
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324 | until [ $i -ge $PeriodLengthInYears ] ; do |
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325 | (( Length = Length + $( IGCM_date_DaysInYear $(( year + i + 1 )) ) )) |
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326 | (( i=i+1 )) |
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327 | done |
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328 | ;; |
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329 | *M|*m) |
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330 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
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331 | IGCM_date_GetYearMonth ${1} year month |
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332 | (( year0 = year )) |
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333 | if [ $(( month + 1 )) -lt 13 ] ; then |
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334 | month0=$(( month + 1 )) |
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335 | else |
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336 | month0=$(( month + 1 - 12 )) |
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337 | (( year = year0 + 1 )) |
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338 | fi |
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339 | (( Length=0 )) |
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340 | (( i=0 )) |
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341 | until [ $i -ge $PeriodLengthInMonths ] ; do |
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342 | if [ $(( month0 + i )) -lt 13 ] ; then |
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343 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month0 + i )) ) )) |
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344 | else |
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345 | (( year = year0 + 1 )) |
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346 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month0 + i - 12 )) ) )) |
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347 | fi |
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348 | (( i=i+1 )) |
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349 | done |
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350 | ;; |
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351 | *D|*d) |
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352 | Length=$( echo ${config_UserChoices_PeriodLength} | sed -e "s/[dD]//" ) ;; |
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353 | *) |
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354 | IGCM_debug_Exit "create_ts " ${config_UserChoices_PeriodLength} " invalid PeriodLength : choose in 1Y, *M, *D." |
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355 | IGCM_debug_Verif_Exit_Post ;; |
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356 | esac |
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357 | echo ${Length} |
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358 | |
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359 | IGCM_debug_PopStack "create_ts_next_date" |
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360 | } |
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361 | |
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362 | # Give the end of the actual $1 period from $2 date |
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363 | function create_ts_begin_date { |
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364 | IGCM_debug_PushStack "create_ts_begin_date" $@ |
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365 | typeset year month Length |
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366 | case ${config_UserChoices_PeriodLength} in |
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367 | *Y|*y) |
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368 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
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369 | IGCM_date_GetYearMonth ${1} year month |
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370 | if [ X${2} = Xend ] ; then |
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371 | (( year = year - PeriodLengthInYears + 1)) |
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372 | fi |
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373 | (( Length=0 )) |
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374 | (( i=0 )) |
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375 | until [ $i -ge $PeriodLengthInYears ] ; do |
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376 | (( Length = Length + $( IGCM_date_DaysInYear $(( year + i )) ) )) |
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377 | (( i=i+1 )) |
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378 | done |
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379 | ;; |
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380 | *M|*m) |
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381 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
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382 | IGCM_date_GetYearMonth ${1} year month |
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383 | if [ X${2} = Xend ] ; then |
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384 | (( month = month - PeriodLengthInMonths + 1 )) |
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385 | fi |
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386 | (( year0 = year )) |
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387 | if [ $month -le 0 ] ; then |
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388 | (( month = month + 12 )) |
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389 | year=$( printf "%04i\n" $(( year - 1 )) ) |
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390 | fi |
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391 | month=$( printf "%02i\n" ${month} ) |
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392 | (( Length=0 )) |
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393 | (( i=0 )) |
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394 | until [ $i -ge $PeriodLengthInMonths ] ; do |
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395 | if [ $(( month + i )) -lt 13 ] ; then |
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396 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month + i )) ) )) |
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397 | else |
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398 | (( year = year0 + 1 )) |
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399 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) )) |
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400 | fi |
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401 | (( i=i+1 )) |
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402 | done |
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403 | ;; |
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404 | *D|*d) |
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405 | Length=$( echo ${config_UserChoices_PeriodLength} | sed -e "s/[dD]//" ) ;; |
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406 | *) |
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407 | IGCM_debug_Exit "create_ts " ${config_UserChoices_PeriodLength} " invalid PeriodLength : choose in 1Y, *M, *D." |
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408 | IGCM_debug_Verif_Exit_Post ;; |
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409 | esac |
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410 | echo ${Length} |
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411 | |
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412 | IGCM_debug_PopStack "create_ts_begin_date" |
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413 | } |
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414 | |
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415 | ######################################################################## |
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416 | # |
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417 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
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418 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
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419 | # |
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420 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
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421 | # - especially for IDRiS |
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422 | # - no special protection against "command too long" ! |
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423 | # - libIGCM_sys should handle that or modify following code part |
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424 | # |
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425 | ######################################################################## |
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426 | |
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427 | if [ ${StandAlone} != true ] ; then |
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428 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
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429 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
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430 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
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431 | |
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432 | if [ X${Running_Flag} = Xy ] ; then |
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433 | # Time Series Job allready running |
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434 | IGCM_debug_Print 1 "Time Series Job allready running exit" |
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435 | exit |
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436 | fi |
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437 | # Now run.card know we are running |
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438 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
439 | # Get information from last execution |
---|
440 | CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
441 | "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
442 | echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
443 | fi |
---|
444 | |
---|
445 | # Is it the first submission or not ? |
---|
446 | if [ X${CompletedFlag} = X ] ; then |
---|
447 | # First Time Series Submission |
---|
448 | FIRST_PASS=TRUE |
---|
449 | Length=$( create_ts_begin_date ${DateBegin} begin) |
---|
450 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
451 | else |
---|
452 | # Last Completed Time Series |
---|
453 | FIRST_PASS=FALSE |
---|
454 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
455 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
456 | for comp in ${config_ListOfComponents[*]} ; do |
---|
457 | # |
---|
458 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
459 | # |
---|
460 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
461 | # |
---|
462 | set -A liste_file |
---|
463 | # |
---|
464 | file_path=${R_SAVE}/${comp}/Analyse |
---|
465 | # |
---|
466 | i=0 |
---|
467 | file=${NULL_STR} |
---|
468 | # |
---|
469 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
470 | # |
---|
471 | # Determine in which output can we find file |
---|
472 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
473 | # |
---|
474 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
475 | case ${FlagDir} in |
---|
476 | *Y) TS_Dir=TS_YE ;; |
---|
477 | *M) TS_Dir=TS_MO ;; |
---|
478 | *D) TS_Dir=TS_DA ;; |
---|
479 | HF) TS_Dir=TS_HF ;; |
---|
480 | INS) TS_Dir=TS_INS ;; |
---|
481 | esac |
---|
482 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
483 | # |
---|
484 | set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
485 | # |
---|
486 | done |
---|
487 | done |
---|
488 | if [ X${file} != X${NULL_STR} ] ; then |
---|
489 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
490 | IGCM_debug_Verif_Exit_Post |
---|
491 | fi |
---|
492 | done |
---|
493 | # |
---|
494 | LEVEL=0 |
---|
495 | # |
---|
496 | fi |
---|
497 | |
---|
498 | ######################################################################## |
---|
499 | # |
---|
500 | # DEFINE LOOP PARAMETERS |
---|
501 | # |
---|
502 | ######################################################################## |
---|
503 | |
---|
504 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
505 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
506 | |
---|
507 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
508 | |
---|
509 | if [ ${DoJob} = true ] ; then |
---|
510 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
511 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
512 | Length=$( create_ts_next_date ${DATE_COUNT} ) |
---|
513 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
514 | done |
---|
515 | else |
---|
516 | NBRE_FILE_TOT=0 |
---|
517 | fi |
---|
518 | |
---|
519 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
520 | NBRE_TOUR=1 |
---|
521 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
522 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
523 | else |
---|
524 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
525 | fi |
---|
526 | |
---|
527 | CURRENT_LOOP=1 |
---|
528 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
529 | # WE HAVE 3 LEVELS |
---|
530 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
531 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
532 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
533 | |
---|
534 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
535 | |
---|
536 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
537 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
538 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
539 | |
---|
540 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
541 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
542 | else |
---|
543 | Length=$( create_ts_next_date ${DATE_FIN_JOB_B_LOOP} ) |
---|
544 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
545 | fi |
---|
546 | |
---|
547 | DATE_FIN=${PeriodDateEnd} |
---|
548 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
549 | |
---|
550 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
551 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
552 | |
---|
553 | LEVEL=1 |
---|
554 | DEPOT="TRUE" |
---|
555 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
556 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
557 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
558 | |
---|
559 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
560 | Length=$( create_ts_next_date ${DATE_FIN_JOB_B_LOOP} ) |
---|
561 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
562 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
563 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
564 | else |
---|
565 | Length=$( create_ts_next_date ${DATE_FIN} ) |
---|
566 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
567 | fi |
---|
568 | |
---|
569 | (( TotLength = 0 )) |
---|
570 | COMPTEUR=1 |
---|
571 | DATE_LOOP=${DATE_COURANTE} |
---|
572 | |
---|
573 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
574 | # |
---|
575 | Length=$( create_ts_next_date ${DATE_LOOP} ) |
---|
576 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
577 | (( TotLength = TotLength + Length )) |
---|
578 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
579 | # |
---|
580 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
581 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
582 | |
---|
583 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
584 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
585 | DEPOT="FALSE" |
---|
586 | LEVEL=2 |
---|
587 | else |
---|
588 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
589 | NBRE_FILE_LOOP=$( expr ${NBRE_FILE_TOT} % $(( UNIX_MAX_LIMIT * $(( CURRENT_LOOP - 1 )) )) ) |
---|
590 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
591 | |
---|
592 | Length=$( create_ts_next_date ${DATE_FIN} ) |
---|
593 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
594 | DATE_FIN=${PeriodDateEnd} |
---|
595 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
596 | |
---|
597 | LEVEL=3 |
---|
598 | DEPOT="TRUE" |
---|
599 | FLAG_B="TRUE" |
---|
600 | fi |
---|
601 | |
---|
602 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
603 | for comp in ${config_ListOfComponents[*]} ; do |
---|
604 | # |
---|
605 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
606 | # |
---|
607 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
608 | # |
---|
609 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
610 | # |
---|
611 | i=0 |
---|
612 | # |
---|
613 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
614 | # |
---|
615 | # Determine in which output can we find file |
---|
616 | # IE : Output/MO or Output/DA or ... |
---|
617 | # |
---|
618 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
619 | case ${FlagDir} in |
---|
620 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
621 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
622 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
623 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
624 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
625 | *) |
---|
626 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
627 | IGCM_sys_Exit "Job create_ts" ;; |
---|
628 | esac |
---|
629 | |
---|
630 | # Initialize array |
---|
631 | set -A liste_file |
---|
632 | set -A liste_file_tmp |
---|
633 | |
---|
634 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
635 | |
---|
636 | COMPTEUR=1 |
---|
637 | DATE_LOOP=${DATE_COURANTE} |
---|
638 | |
---|
639 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
640 | # |
---|
641 | Length1=$( create_ts_begin_date ${DATE_LOOP} end) |
---|
642 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
643 | |
---|
644 | Length2=$( create_ts_next_date ${DATE_LOOP} end) |
---|
645 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
646 | |
---|
647 | set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
648 | set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
649 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
650 | # |
---|
651 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
652 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
653 | |
---|
654 | # Get selected files |
---|
655 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
656 | eval ExitFlag=false |
---|
657 | IGCM_debug_Verif_Exit_Post |
---|
658 | |
---|
659 | # Apply IGCM_Patch if needed |
---|
660 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
661 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
662 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
663 | IGCM_${Patch} ${file_t} |
---|
664 | done |
---|
665 | done |
---|
666 | fi |
---|
667 | |
---|
668 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
669 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
670 | Length=$( create_ts_begin_date ${DATE_COURANTE} end) |
---|
671 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
672 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
673 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
674 | |
---|
675 | liste_coord=" " |
---|
676 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
677 | liste_coord=${liste_coord}${axis}"," |
---|
678 | done |
---|
679 | |
---|
680 | # Time axis must be the last dimension |
---|
681 | time_axis=${axis} |
---|
682 | |
---|
683 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
684 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
685 | # |
---|
686 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
687 | # |
---|
688 | # # Change time axis name to be CF compliant |
---|
689 | # if [ ${time_axis} != time_counter ]; then |
---|
690 | # IGCM_sys_ncrename -O -v ${time_axis},time_counter ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
691 | # fi |
---|
692 | # |
---|
693 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
694 | # WE CONCATENATE WITH EXISTING FILES |
---|
695 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
696 | file2=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
697 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
698 | IGCM_sys_ncrcat --hst ${file1} ${file2} ${file_out} |
---|
699 | # |
---|
700 | IGCM_sys_Rm ${file1} ${file2} |
---|
701 | fi |
---|
702 | # |
---|
703 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
704 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
705 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
706 | #${ncatted} -a modulo,time_counter,c,c," " ${file_out} |
---|
707 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
708 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
709 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
710 | IGCM_sys_Rm ${file_out} |
---|
711 | # |
---|
712 | fi |
---|
713 | # |
---|
714 | eval ExitFlag=false |
---|
715 | IGCM_debug_Verif_Exit_Post |
---|
716 | done # for var in ${liste_var} ; do |
---|
717 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
718 | done # for file in ${liste_file_brut} do |
---|
719 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
720 | eval ExitFlag=false |
---|
721 | IGCM_debug_Verif_Exit_Post |
---|
722 | # GO AHEAD IN DEEPEST LOOP |
---|
723 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
724 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
725 | # FINISH |
---|
726 | |
---|
727 | # DODS copy |
---|
728 | for comp in ${config_ListOfComponents[*]} ; do |
---|
729 | for TS_Dir in TS_YE TS_MO TS_DA TS_HF TS_INS ; do |
---|
730 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
731 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
732 | done |
---|
733 | done |
---|
734 | |
---|
735 | # clean environment variables and export usefull one : |
---|
736 | if [ X$( hostname -s ) = Xrhodes ] ; then |
---|
737 | LISTE_ENV=$( env | grep -iv MYLANG | grep -iv HOST | grep -iv LOGIN | grep -iv config_ | grep -iv R_ | grep -iv libIGCM | grep -iv PERIOD \ |
---|
738 | | grep -iv DMFDIR | grep -iv AN_| grep -iv YEARS | grep -iv ex | grep -iv RESOL_ | grep -iv PATH | grep -iv WORKDIR | grep -iv USER \ |
---|
739 | | grep -iv LOGNAME | grep -iv PROFILE | grep -iv ENV | grep -iv TMPDIR | grep -iv POST_DIR | grep -iv StandAlone | grep -iv DB | awk -F= '{print $1}' ) |
---|
740 | |
---|
741 | for variables in ${LISTE_ENV} ; do |
---|
742 | unset ${variables} |
---|
743 | done |
---|
744 | fi |
---|
745 | |
---|
746 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
747 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_SRF |
---|
748 | |
---|
749 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_SRF" |
---|
750 | export listVarEnv |
---|
751 | |
---|
752 | #D- |
---|
753 | # -------------------------------------------------------------------- |
---|
754 | #D- Test if all was right |
---|
755 | # -------------------------------------------------------------------- |
---|
756 | IGCM_debug_Verif_Exit_Post |
---|
757 | # -------------------------------------------------------------------- |
---|
758 | #D- Submit MONITORING |
---|
759 | # -------------------------------------------------------------------- |
---|
760 | IGCM_sys_QsubPost monitoring |
---|
761 | |
---|
762 | #D- |
---|
763 | # -------------------------------------------------------------------- |
---|
764 | #D- Update the run.card |
---|
765 | # -------------------------------------------------------------------- |
---|
766 | if [ ${StandAlone} != true ] ; then |
---|
767 | # Put in run.card end period of time series |
---|
768 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
769 | # We have finish the job ! |
---|
770 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
771 | fi |
---|
772 | date |
---|