| 1 | #-Q- cesium #!/bin/ksh |
|---|
| 2 | #-Q- cesium ###################### |
|---|
| 3 | #-Q- cesium ## CESIUM CEA ## |
|---|
| 4 | #-Q- cesium ###################### |
|---|
| 5 | #-Q- cesium #MSUB -r TS # Nom du job |
|---|
| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
|---|
| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
|---|
| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
|---|
| 9 | #-Q- cesium #MSUB -E "-j o" |
|---|
| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
|---|
| 11 | #-Q- curie ###################### |
|---|
| 12 | #-Q- curie ## CURIE TGCC/CEA ## |
|---|
| 13 | #-Q- curie ###################### |
|---|
| 14 | #-Q- curie #MSUB -r TS # Nom du job |
|---|
| 15 | #-Q- curie #MSUB -eo |
|---|
| 16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
|---|
| 17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
|---|
| 18 | #-Q- curie #MSUB -E '--no-requeue' |
|---|
| 19 | #-Q- curie #MSUB -q large |
|---|
| 20 | #-Q- curie #MSUB -Q normal |
|---|
| 21 | #-Q- curie set +x |
|---|
| 22 | #-Q- platine #!/usr/bin/ksh |
|---|
| 23 | #-Q- platine ################### |
|---|
| 24 | #-Q- platine ## PLATINE CEA ## |
|---|
| 25 | #-Q- platine ################### |
|---|
| 26 | #-Q- platine #BSUB -J TS # Nom du job |
|---|
| 27 | #-Q- platine #BSUB -N # message a la fin du job |
|---|
| 28 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
|---|
| 29 | #-Q- platine #BSUB -W 1:00 # Limite temps |
|---|
| 30 | #-Q- platine #BSUB -q post # Passage en queue post |
|---|
| 31 | #-Q- platine #BSUB -L /bin/ksh |
|---|
| 32 | #-Q- sx8brodie #!/bin/ksh |
|---|
| 33 | #-Q- sx8brodie ####################### |
|---|
| 34 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
|---|
| 35 | #-Q- sx8brodie ####################### |
|---|
| 36 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
|---|
| 37 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
|---|
| 38 | #-Q- sx8brodie # Nom du travail LoadLeveler |
|---|
| 39 | #-Q- sx8brodie # @ job_name = TS |
|---|
| 40 | #-Q- sx8brodie # Fichier de sortie standard du travail |
|---|
| 41 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
|---|
| 42 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
|---|
| 43 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
|---|
| 44 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
|---|
| 45 | #-Q- sx8brodie # @ notification = error |
|---|
| 46 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
|---|
| 47 | #-Q- sx8brodie # @ queue |
|---|
| 48 | #-Q- aix6 #!/bin/ksh |
|---|
| 49 | #-Q- aix6 ####################### |
|---|
| 50 | #-Q- aix6 ## VARGAS IDRIS ## |
|---|
| 51 | #-Q- aix6 ####################### |
|---|
| 52 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
|---|
| 53 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
|---|
| 54 | #-Q- aix6 # Nom du travail LoadLeveler |
|---|
| 55 | #-Q- aix6 # @ job_name = TS |
|---|
| 56 | #-Q- aix6 # Fichier de sortie standard du travail |
|---|
| 57 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
|---|
| 58 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
|---|
| 59 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
|---|
| 60 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
|---|
| 61 | #-Q- aix6 # @ notification = error |
|---|
| 62 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
|---|
| 63 | #-Q- aix6 # @ queue |
|---|
| 64 | #-Q- ulam #!/bin/ksh |
|---|
| 65 | #-Q- ulam ####################### |
|---|
| 66 | #-Q- ulam ## ULAM IDRIS ## |
|---|
| 67 | #-Q- ulam ####################### |
|---|
| 68 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
|---|
| 69 | #-Q- ulam # @ wall_clock_limit = 20:00:00 |
|---|
| 70 | #-Q- ulam # Nom du travail LoadLeveler |
|---|
| 71 | #-Q- ulam # @ job_name = TS |
|---|
| 72 | #-Q- ulam # Fichier de sortie standard du travail |
|---|
| 73 | #-Q- ulam # @ output = $(job_name).$(jobid) |
|---|
| 74 | #-Q- ulam # Fichier de sortie d'erreur du travail |
|---|
| 75 | #-Q- ulam # @ error = $(job_name).$(jobid) |
|---|
| 76 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
|---|
| 77 | #-Q- ulam # @ notification = error |
|---|
| 78 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
|---|
| 79 | #-Q- ulam # @ queue |
|---|
| 80 | #-Q- sx8mercure #!/bin/ksh |
|---|
| 81 | #-Q- sx8mercure ###################### |
|---|
| 82 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
|---|
| 83 | #-Q- sx8mercure ###################### |
|---|
| 84 | #-Q- sx8mercure #PBS -N TS # Nom du job |
|---|
| 85 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
|---|
| 86 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
|---|
| 87 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
|---|
| 88 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
|---|
| 89 | #-Q- sx8mercure #PBS -q scalaire |
|---|
| 90 | #-Q- sx8mercure #PBS -r n |
|---|
| 91 | #-Q- sx9mercure #!/bin/ksh |
|---|
| 92 | #-Q- sx9mercure ###################### |
|---|
| 93 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
|---|
| 94 | #-Q- sx9mercure ###################### |
|---|
| 95 | #-Q- sx9mercure #PBS -N TS # Nom du job |
|---|
| 96 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
|---|
| 97 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
|---|
| 98 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
|---|
| 99 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 2 heures |
|---|
| 100 | #-Q- sx9mercure #PBS -q scalaire |
|---|
| 101 | #-Q- sx9mercure #PBS -r n |
|---|
| 102 | #-Q- titane #!/bin/ksh |
|---|
| 103 | #-Q- titane ###################### |
|---|
| 104 | #-Q- titane ## TITANE CEA ## |
|---|
| 105 | #-Q- titane ###################### |
|---|
| 106 | #-Q- titane #MSUB -r TS # Nom du job |
|---|
| 107 | #-Q- titane #MSUB -eo |
|---|
| 108 | #-Q- titane #MSUB -n 1 # Reservation du processus |
|---|
| 109 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
|---|
| 110 | #-Q- titane #MSUB -q mono |
|---|
| 111 | #-Q- titane #MSUB -E '-rn' |
|---|
| 112 | #-Q- lxiv8 ###################### |
|---|
| 113 | #-Q- lxiv8 ## OBELIX LSCE ## |
|---|
| 114 | #-Q- lxiv8 ###################### |
|---|
| 115 | #-Q- lxiv8 #PBS -N TS |
|---|
| 116 | #-Q- lxiv8 #PBS -m a |
|---|
| 117 | #-Q- lxiv8 #PBS -j oe |
|---|
| 118 | #-Q- lxiv8 #PBS -q medium |
|---|
| 119 | #-Q- lxiv8 #PBS -o TS.$$ |
|---|
| 120 | #-Q- lxiv8 #PBS -S /bin/ksh |
|---|
| 121 | #-Q- default #!/bin/ksh |
|---|
| 122 | #-Q- default ################## |
|---|
| 123 | #-Q- default ## DEFAULT HOST ## |
|---|
| 124 | #-Q- default ################## |
|---|
| 125 | |
|---|
| 126 | #************************************************************** |
|---|
| 127 | # Author: Sebastien Denvil |
|---|
| 128 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
|---|
| 129 | # $Revision:: $ Revision of last commit |
|---|
| 130 | # $Author:: $ Author of last commit |
|---|
| 131 | # $Date:: $ Date of last commit |
|---|
| 132 | # IPSL (2006) |
|---|
| 133 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
|---|
| 134 | # |
|---|
| 135 | #************************************************************** |
|---|
| 136 | |
|---|
| 137 | #set -eu |
|---|
| 138 | #set -vx |
|---|
| 139 | |
|---|
| 140 | date |
|---|
| 141 | |
|---|
| 142 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
|---|
| 143 | #-Q- aix6 export OMP_NUM_THREADS=1 |
|---|
| 144 | #-Q- ulam export OMP_NUM_THREADS=1 |
|---|
| 145 | |
|---|
| 146 | #D- Task type (computing or post-processing) |
|---|
| 147 | TaskType=post-processing |
|---|
| 148 | |
|---|
| 149 | ######################################################################## |
|---|
| 150 | |
|---|
| 151 | #D- Flag to determine if this job in a standalone mode |
|---|
| 152 | #D- Default : value from AA_job if any |
|---|
| 153 | StandAlone=${StandAlone:=true} |
|---|
| 154 | |
|---|
| 155 | #D- Path to libIGCM |
|---|
| 156 | #D- Default : value from AA_job if any |
|---|
| 157 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
|---|
| 158 | # WARNING you must check MirrorlibIGCM variable in sys library. |
|---|
| 159 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
|---|
| 160 | # WARNING of your running libIGCM directory. |
|---|
| 161 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
|---|
| 162 | |
|---|
| 163 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
|---|
| 164 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
|---|
| 165 | CompletedFlag=${CompletedFlag:=} |
|---|
| 166 | |
|---|
| 167 | #D- Flag to determine task type this script will perform. |
|---|
| 168 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
|---|
| 169 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
|---|
| 170 | TsTask=${TsTask:=2D} |
|---|
| 171 | if [ X${TsTask} = Xempty ] ; then |
|---|
| 172 | TsTask="" |
|---|
| 173 | fi |
|---|
| 174 | |
|---|
| 175 | #D- Flag to determine if rebuild process has been performed asynchronously |
|---|
| 176 | #D- Possible value true or false. |
|---|
| 177 | #D- If true raw files has allready been patched by rebuild job |
|---|
| 178 | #D- If false create_ts will patch the raw files |
|---|
| 179 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
|---|
| 180 | RebuildFrequency=${RebuildFrequency:=true} |
|---|
| 181 | |
|---|
| 182 | #D- Flag to determine job's output directory |
|---|
| 183 | #D- Default : value from libIGCM_post.ksh if any |
|---|
| 184 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
|---|
| 185 | |
|---|
| 186 | #D- Increased verbosity (1, 2, 3) |
|---|
| 187 | #D- Default : value from AA_job if any |
|---|
| 188 | Verbosity=${Verbosity:=3} |
|---|
| 189 | |
|---|
| 190 | #D- Low level debug : to bypass lib test checks and stack construction |
|---|
| 191 | #D- Default : value from AA_job if any |
|---|
| 192 | DEBUG_debug=${DEBUG_debug:=false} |
|---|
| 193 | |
|---|
| 194 | #D- TEMPORARY Flag to determine atmospheric resolution |
|---|
| 195 | #D- Default : value from atmospheric driver if any |
|---|
| 196 | RESOL_ATM=ALL |
|---|
| 197 | |
|---|
| 198 | #D- Flag to determine surface resolution |
|---|
| 199 | #D- Default : value from surface driver if any |
|---|
| 200 | RESOL_SRF=ALL |
|---|
| 201 | |
|---|
| 202 | #D- Flag to determine surface resolution |
|---|
| 203 | #D- Default : value from surface driver if any |
|---|
| 204 | RESOL_SBG=ALL |
|---|
| 205 | |
|---|
| 206 | #D- TEMPORARY Flag to determine ocean resolution |
|---|
| 207 | #D- Default : value from ocean driver if any |
|---|
| 208 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
|---|
| 209 | |
|---|
| 210 | #D- TEMPORARY Flag to determine ice resolution |
|---|
| 211 | #D- Default : value from ice driver if any |
|---|
| 212 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
|---|
| 213 | |
|---|
| 214 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
|---|
| 215 | #D- Default : value from ice driver if any |
|---|
| 216 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
|---|
| 217 | |
|---|
| 218 | ######################################################################## |
|---|
| 219 | |
|---|
| 220 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
|---|
| 221 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
|---|
| 222 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
|---|
| 223 | ( ${DEBUG_debug} ) && IGCM_card_Check |
|---|
| 224 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
|---|
| 225 | ( ${DEBUG_debug} ) && IGCM_date_Check |
|---|
| 226 | #------- |
|---|
| 227 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
|---|
| 228 | |
|---|
| 229 | ######################################################################## |
|---|
| 230 | |
|---|
| 231 | #set -vx |
|---|
| 232 | |
|---|
| 233 | # Useful cleaning function |
|---|
| 234 | MENAGE () |
|---|
| 235 | { |
|---|
| 236 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
|---|
| 237 | } |
|---|
| 238 | |
|---|
| 239 | ######################################################################## |
|---|
| 240 | |
|---|
| 241 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
|---|
| 242 | IGCM_sys_Cd ${RUN_DIR_PATH} |
|---|
| 243 | |
|---|
| 244 | # ------------------------------------------------------------------ |
|---|
| 245 | # Test if all was right before proceeding further |
|---|
| 246 | # ------------------------------------------------------------------ |
|---|
| 247 | IGCM_debug_Verif_Exit_Post |
|---|
| 248 | |
|---|
| 249 | if [ ${StandAlone} = true ] ; then |
|---|
| 250 | CARD_DIR=${SUBMIT_DIR} |
|---|
| 251 | else |
|---|
| 252 | CARD_DIR=${RUN_DIR_PATH} |
|---|
| 253 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
|---|
| 254 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
|---|
| 255 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
|---|
| 256 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
|---|
| 257 | fi |
|---|
| 258 | |
|---|
| 259 | #================================== |
|---|
| 260 | # First of all |
|---|
| 261 | # |
|---|
| 262 | typeset option |
|---|
| 263 | |
|---|
| 264 | #================================== |
|---|
| 265 | # Read UserChoices section: |
|---|
| 266 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
|---|
| 267 | echo |
|---|
| 268 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
|---|
| 269 | for option in ${config_UserChoices[*]} ; do |
|---|
| 270 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
|---|
| 271 | eval auxprint=\${config_UserChoices_${option}} |
|---|
| 272 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
|---|
| 273 | done |
|---|
| 274 | # |
|---|
| 275 | echo |
|---|
| 276 | |
|---|
| 277 | #================================== |
|---|
| 278 | # Read Ensemble section: |
|---|
| 279 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Ensemble |
|---|
| 280 | echo |
|---|
| 281 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Ensemble" |
|---|
| 282 | for option in ${config_Ensemble[*]} ; do |
|---|
| 283 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option} |
|---|
| 284 | eval auxprint=\${config_Ensemble_${option}} |
|---|
| 285 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
|---|
| 286 | done |
|---|
| 287 | # |
|---|
| 288 | echo |
|---|
| 289 | |
|---|
| 290 | #================================== |
|---|
| 291 | # Read Post section: |
|---|
| 292 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Post |
|---|
| 293 | echo |
|---|
| 294 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Post" |
|---|
| 295 | for option in ${config_Post[*]} ; do |
|---|
| 296 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post ${option} |
|---|
| 297 | eval auxprint=\${config_Post_${option}} |
|---|
| 298 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
|---|
| 299 | done |
|---|
| 300 | # |
|---|
| 301 | echo |
|---|
| 302 | |
|---|
| 303 | #================================== |
|---|
| 304 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
|---|
| 305 | if [ X${PackDefault} = Xtrue ] ; then |
|---|
| 306 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
|---|
| 307 | else |
|---|
| 308 | config_Post_PackFrequency=NONE |
|---|
| 309 | fi |
|---|
| 310 | |
|---|
| 311 | #================================== |
|---|
| 312 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
|---|
| 313 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
|---|
| 314 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
|---|
| 315 | fi |
|---|
| 316 | |
|---|
| 317 | #================================== |
|---|
| 318 | #R_SAVE : Job output directory |
|---|
| 319 | #R_BUFR : Job output buffered directory |
|---|
| 320 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
|---|
| 321 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
|---|
| 322 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
|---|
| 323 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
|---|
| 324 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
|---|
| 325 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
|---|
| 326 | else |
|---|
| 327 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
|---|
| 328 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
|---|
| 329 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
|---|
| 330 | fi |
|---|
| 331 | else |
|---|
| 332 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
|---|
| 333 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
|---|
| 334 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
|---|
| 335 | R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
|---|
| 336 | else |
|---|
| 337 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
|---|
| 338 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
|---|
| 339 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
|---|
| 340 | fi |
|---|
| 341 | fi |
|---|
| 342 | # |
|---|
| 343 | # Determine component to take care of depending on kind of task create_ts will perform |
|---|
| 344 | # |
|---|
| 345 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
|---|
| 346 | # |
|---|
| 347 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
|---|
| 348 | # |
|---|
| 349 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
|---|
| 350 | |
|---|
| 351 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
|---|
| 352 | # |
|---|
| 353 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
|---|
| 354 | # |
|---|
| 355 | # Determine Dimension of the produced time series : 2D or 3D |
|---|
| 356 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
|---|
| 357 | Dimension=2D |
|---|
| 358 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
|---|
| 359 | Dimension=3D |
|---|
| 360 | else |
|---|
| 361 | Dimension="" |
|---|
| 362 | fi |
|---|
| 363 | |
|---|
| 364 | # ------------------------------------------------------------------ |
|---|
| 365 | #D- Test if all was right before entering the loop |
|---|
| 366 | # ------------------------------------------------------------------ |
|---|
| 367 | IGCM_debug_Verif_Exit_Post |
|---|
| 368 | |
|---|
| 369 | ######################################################################## |
|---|
| 370 | # |
|---|
| 371 | # Depending on requested time series fill following variables : |
|---|
| 372 | # |
|---|
| 373 | # - LISTE_FILE_${comp}[*] |
|---|
| 374 | # - LISTE_VARS_${file}[*] |
|---|
| 375 | # - LISTE_AXIS_${file}[*] |
|---|
| 376 | # - LISTE_PATCH_${file}[*] |
|---|
| 377 | ######################################################################## |
|---|
| 378 | |
|---|
| 379 | # |
|---|
| 380 | # For each selected component determine which files need post-processing |
|---|
| 381 | # |
|---|
| 382 | DoJob=false |
|---|
| 383 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 384 | # |
|---|
| 385 | ActiveComp=false |
|---|
| 386 | # |
|---|
| 387 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
|---|
| 388 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
|---|
| 389 | # |
|---|
| 390 | card=${CARD_DIR}/COMP/${compname}.card |
|---|
| 391 | |
|---|
| 392 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
|---|
| 393 | # |
|---|
| 394 | ListFilesName=${compname}_OutputFiles_List |
|---|
| 395 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
|---|
| 396 | # |
|---|
| 397 | if [ X${FileName0} != X${NULL_STR} ] ; then |
|---|
| 398 | # |
|---|
| 399 | #IGCM_debug_Print 1 "Component : ${compname}" |
|---|
| 400 | # |
|---|
| 401 | # INITIALISATION |
|---|
| 402 | # |
|---|
| 403 | typeset i |
|---|
| 404 | if [ ${FlagToRead} ] ; then |
|---|
| 405 | ((NbFiles=${FlagToRead})) |
|---|
| 406 | ((i=${NbFiles})) |
|---|
| 407 | else |
|---|
| 408 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
|---|
| 409 | i=2 |
|---|
| 410 | fi |
|---|
| 411 | # |
|---|
| 412 | until [ $i -gt $NbFiles ]; do |
|---|
| 413 | # |
|---|
| 414 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
|---|
| 415 | # |
|---|
| 416 | if [ X${flag_post} != XNONE ] ; then |
|---|
| 417 | # |
|---|
| 418 | # For each comp and each file who needs post-processing |
|---|
| 419 | # determine which variables need time series. |
|---|
| 420 | # |
|---|
| 421 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
|---|
| 422 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
|---|
| 423 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
|---|
| 424 | # |
|---|
| 425 | # If TimeSeriesVars list is empty we skip |
|---|
| 426 | # |
|---|
| 427 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
|---|
| 428 | # |
|---|
| 429 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
|---|
| 430 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
|---|
| 431 | (( i=i+3 )) |
|---|
| 432 | continue |
|---|
| 433 | # |
|---|
| 434 | fi |
|---|
| 435 | # |
|---|
| 436 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
|---|
| 437 | # |
|---|
| 438 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
|---|
| 439 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
|---|
| 440 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
|---|
| 441 | (( i=i+3 )) |
|---|
| 442 | continue |
|---|
| 443 | fi |
|---|
| 444 | # |
|---|
| 445 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
|---|
| 446 | # |
|---|
| 447 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
|---|
| 448 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
|---|
| 449 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
|---|
| 450 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
|---|
| 451 | (( i=i+3 )) |
|---|
| 452 | continue |
|---|
| 453 | fi |
|---|
| 454 | fi |
|---|
| 455 | # |
|---|
| 456 | # Now on we know we have things to do |
|---|
| 457 | # |
|---|
| 458 | |
|---|
| 459 | # |
|---|
| 460 | # We need coordinates axis to properly fill produced time series |
|---|
| 461 | # |
|---|
| 462 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
|---|
| 463 | # |
|---|
| 464 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
|---|
| 465 | # |
|---|
| 466 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
|---|
| 467 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
|---|
| 468 | (( i=i+3 )) |
|---|
| 469 | continue |
|---|
| 470 | # |
|---|
| 471 | fi |
|---|
| 472 | # |
|---|
| 473 | # We need LIST of variables not allready produced (useful for standalone mode) |
|---|
| 474 | # |
|---|
| 475 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
|---|
| 476 | case ${FlagDir} in |
|---|
| 477 | *Y) TS_Dir=TS_YE ;; |
|---|
| 478 | *M) TS_Dir=TS_MO ;; |
|---|
| 479 | *D) TS_Dir=TS_DA ;; |
|---|
| 480 | HF) TS_Dir=TS_HF ;; |
|---|
| 481 | 3H) TS_Dir=TS_HF ;; |
|---|
| 482 | INS) TS_Dir=TS_INS ;; |
|---|
| 483 | esac |
|---|
| 484 | # |
|---|
| 485 | count=0 |
|---|
| 486 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
|---|
| 487 | # |
|---|
| 488 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
|---|
| 489 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
|---|
| 490 | # |
|---|
| 491 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
|---|
| 492 | if [ ! $? = 0 ] ; then |
|---|
| 493 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
|---|
| 494 | ActiveComp=true |
|---|
| 495 | (( count = count + 1 )) |
|---|
| 496 | fi |
|---|
| 497 | done |
|---|
| 498 | # |
|---|
| 499 | if [ ${count} -gt 0 ] ; then |
|---|
| 500 | # |
|---|
| 501 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
|---|
| 502 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
|---|
| 503 | # |
|---|
| 504 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
|---|
| 505 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
|---|
| 506 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
|---|
| 507 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
|---|
| 508 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
|---|
| 509 | if [ Xload${Patch} != X ] ; then |
|---|
| 510 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
|---|
| 511 | eval load${Patch}=loaded |
|---|
| 512 | fi |
|---|
| 513 | done |
|---|
| 514 | fi |
|---|
| 515 | fi |
|---|
| 516 | fi |
|---|
| 517 | fi |
|---|
| 518 | (( i=i+3 )) |
|---|
| 519 | done |
|---|
| 520 | fi |
|---|
| 521 | # |
|---|
| 522 | if [ ${ActiveComp} = true ] ; then |
|---|
| 523 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
|---|
| 524 | fi |
|---|
| 525 | done |
|---|
| 526 | |
|---|
| 527 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
|---|
| 528 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
|---|
| 529 | |
|---|
| 530 | ######################################################################## |
|---|
| 531 | # |
|---|
| 532 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
|---|
| 533 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
|---|
| 534 | # |
|---|
| 535 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
|---|
| 536 | # - especially for IDRiS |
|---|
| 537 | # - no special protection against "command too long" ! |
|---|
| 538 | # - libIGCM_sys should handle that or modify following code part |
|---|
| 539 | # |
|---|
| 540 | ######################################################################## |
|---|
| 541 | |
|---|
| 542 | if [ ${StandAlone} != true ] ; then |
|---|
| 543 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
|---|
| 544 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
|---|
| 545 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
|---|
| 546 | |
|---|
| 547 | #if [ X${Running_Flag} = Xy ] ; then |
|---|
| 548 | # # Time Series Job allready running |
|---|
| 549 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
|---|
| 550 | # exit |
|---|
| 551 | #fi |
|---|
| 552 | # Now run.card know we are running |
|---|
| 553 | |
|---|
| 554 | |
|---|
| 555 | |
|---|
| 556 | |
|---|
| 557 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
|---|
| 558 | |
|---|
| 559 | |
|---|
| 560 | |
|---|
| 561 | |
|---|
| 562 | |
|---|
| 563 | # Get information from last execution |
|---|
| 564 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
|---|
| 565 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
|---|
| 566 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
|---|
| 567 | fi |
|---|
| 568 | |
|---|
| 569 | # Is it the first submission or not ? |
|---|
| 570 | |
|---|
| 571 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
|---|
| 572 | # First Time Series Submission |
|---|
| 573 | FIRST_PASS=TRUE |
|---|
| 574 | Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin) |
|---|
| 575 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
|---|
| 576 | else |
|---|
| 577 | # Last Completed Time Series |
|---|
| 578 | FIRST_PASS=FALSE |
|---|
| 579 | DATE_FIN_JOB_B=${CompletedFlag} |
|---|
| 580 | date=${DateBegin}_${DATE_FIN_JOB_B} |
|---|
| 581 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 582 | # |
|---|
| 583 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
|---|
| 584 | # |
|---|
| 585 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
|---|
| 586 | # |
|---|
| 587 | #set -A liste_file |
|---|
| 588 | unset liste_file |
|---|
| 589 | # |
|---|
| 590 | file_path=${R_SAVE}/${comp}/Analyse |
|---|
| 591 | # |
|---|
| 592 | i=0 |
|---|
| 593 | file=${NULL_STR} |
|---|
| 594 | # |
|---|
| 595 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
|---|
| 596 | # |
|---|
| 597 | # Determine in which output can we find file |
|---|
| 598 | # IE : Analyse/TS or Analyse/DA2TS or ... |
|---|
| 599 | # |
|---|
| 600 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
|---|
| 601 | case ${FlagDir} in |
|---|
| 602 | *Y) TS_Dir=TS_YE ;; |
|---|
| 603 | *M) TS_Dir=TS_MO ;; |
|---|
| 604 | *D) TS_Dir=TS_DA ;; |
|---|
| 605 | HF) TS_Dir=TS_HF ;; |
|---|
| 606 | 3H) TS_Dir=TS_HF ;; |
|---|
| 607 | INS) TS_Dir=TS_INS ;; |
|---|
| 608 | esac |
|---|
| 609 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
|---|
| 610 | # |
|---|
| 611 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
|---|
| 612 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
|---|
| 613 | # |
|---|
| 614 | done |
|---|
| 615 | done |
|---|
| 616 | if [ X${file} != X${NULL_STR} ] ; then |
|---|
| 617 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
|---|
| 618 | # Even if some files are missing we tried to continue |
|---|
| 619 | # Either ListVar in compname.card are asked but not present in original history file |
|---|
| 620 | # Either a previous TS task failed |
|---|
| 621 | ExitFlag=false |
|---|
| 622 | IGCM_debug_Verif_Exit_Post |
|---|
| 623 | fi |
|---|
| 624 | done |
|---|
| 625 | # |
|---|
| 626 | LEVEL=0 |
|---|
| 627 | # |
|---|
| 628 | fi |
|---|
| 629 | |
|---|
| 630 | ######################################################################## |
|---|
| 631 | # |
|---|
| 632 | # DEFINE LOOP PARAMETERS |
|---|
| 633 | # |
|---|
| 634 | ######################################################################## |
|---|
| 635 | |
|---|
| 636 | DATE_COUNT=${DATE_FIN_JOB_B} |
|---|
| 637 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
|---|
| 638 | |
|---|
| 639 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
|---|
| 640 | |
|---|
| 641 | if [ ${DoJob} = true ] ; then |
|---|
| 642 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
|---|
| 643 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
|---|
| 644 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} ) |
|---|
| 645 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
|---|
| 646 | done |
|---|
| 647 | else |
|---|
| 648 | NBRE_FILE_TOT=0 |
|---|
| 649 | fi |
|---|
| 650 | |
|---|
| 651 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
|---|
| 652 | NBRE_TOUR=1 |
|---|
| 653 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
|---|
| 654 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
|---|
| 655 | else |
|---|
| 656 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
|---|
| 657 | fi |
|---|
| 658 | |
|---|
| 659 | CURRENT_LOOP=1 |
|---|
| 660 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
|---|
| 661 | # WE HAVE 3 LEVELS |
|---|
| 662 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
|---|
| 663 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
|---|
| 664 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
|---|
| 665 | |
|---|
| 666 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
|---|
| 667 | |
|---|
| 668 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
|---|
| 669 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
|---|
| 670 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
|---|
| 671 | |
|---|
| 672 | if [ ${FIRST_PASS} = TRUE ] ; then |
|---|
| 673 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
|---|
| 674 | else |
|---|
| 675 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
|---|
| 676 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
|---|
| 677 | fi |
|---|
| 678 | |
|---|
| 679 | DATE_FIN=${PeriodDateEnd} |
|---|
| 680 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
|---|
| 681 | |
|---|
| 682 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
|---|
| 683 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
|---|
| 684 | |
|---|
| 685 | LEVEL=1 |
|---|
| 686 | DEPOT="TRUE" |
|---|
| 687 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
|---|
| 688 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
|---|
| 689 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
|---|
| 690 | |
|---|
| 691 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
|---|
| 692 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
|---|
| 693 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
|---|
| 694 | elif [ -z "${DATE_COURANTE}" ] ; then |
|---|
| 695 | DATE_COURANTE=${DATE_FIN_JOB_B} |
|---|
| 696 | else |
|---|
| 697 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
|---|
| 698 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
|---|
| 699 | fi |
|---|
| 700 | |
|---|
| 701 | (( TotLength = 0 )) |
|---|
| 702 | COMPTEUR=1 |
|---|
| 703 | DATE_LOOP=${DATE_COURANTE} |
|---|
| 704 | |
|---|
| 705 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
|---|
| 706 | # |
|---|
| 707 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
|---|
| 708 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
|---|
| 709 | (( TotLength = TotLength + Length )) |
|---|
| 710 | (( COMPTEUR = COMPTEUR + 1 )) |
|---|
| 711 | # |
|---|
| 712 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
|---|
| 713 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
|---|
| 714 | |
|---|
| 715 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
|---|
| 716 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
|---|
| 717 | DEPOT="FALSE" |
|---|
| 718 | LEVEL=2 |
|---|
| 719 | else |
|---|
| 720 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
|---|
| 721 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
|---|
| 722 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
|---|
| 723 | |
|---|
| 724 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
|---|
| 725 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
|---|
| 726 | DATE_FIN=${PeriodDateEnd} |
|---|
| 727 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
|---|
| 728 | |
|---|
| 729 | LEVEL=3 |
|---|
| 730 | DEPOT="TRUE" |
|---|
| 731 | FLAG_B="TRUE" |
|---|
| 732 | fi |
|---|
| 733 | |
|---|
| 734 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
|---|
| 735 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 736 | # |
|---|
| 737 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
|---|
| 738 | # |
|---|
| 739 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
|---|
| 740 | # |
|---|
| 741 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
|---|
| 742 | # |
|---|
| 743 | i=0 |
|---|
| 744 | # |
|---|
| 745 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
|---|
| 746 | # |
|---|
| 747 | # Determine in which output can we find file |
|---|
| 748 | # IE : Output/MO or Output/DA or ... |
|---|
| 749 | # |
|---|
| 750 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
|---|
| 751 | case ${FlagDir} in |
|---|
| 752 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
|---|
| 753 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
|---|
| 754 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
|---|
| 755 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
|---|
| 756 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
|---|
| 757 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
|---|
| 758 | *) |
|---|
| 759 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
|---|
| 760 | IGCM_sys_Exit "Job create_ts" ;; |
|---|
| 761 | esac |
|---|
| 762 | |
|---|
| 763 | # Initialize array |
|---|
| 764 | #set -A liste_file |
|---|
| 765 | #set -A liste_file_tmp |
|---|
| 766 | unset liste_file |
|---|
| 767 | unset liste_file_tmp |
|---|
| 768 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
|---|
| 769 | |
|---|
| 770 | COMPTEUR=1 |
|---|
| 771 | DATE_LOOP=${DATE_COURANTE} |
|---|
| 772 | |
|---|
| 773 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
|---|
| 774 | # |
|---|
| 775 | Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end) |
|---|
| 776 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
|---|
| 777 | |
|---|
| 778 | Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
|---|
| 779 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
|---|
| 780 | |
|---|
| 781 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
|---|
| 782 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
|---|
| 783 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
|---|
| 784 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
|---|
| 785 | (( COMPTEUR = COMPTEUR + 1 )) |
|---|
| 786 | # |
|---|
| 787 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
|---|
| 788 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
|---|
| 789 | |
|---|
| 790 | # Get selected files |
|---|
| 791 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
|---|
| 792 | IGCM_debug_Verif_Exit_Post |
|---|
| 793 | |
|---|
| 794 | # Apply IGCM_Patch if needed |
|---|
| 795 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
|---|
| 796 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
|---|
| 797 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
|---|
| 798 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
|---|
| 799 | IGCM_${Patch} ${file_t} |
|---|
| 800 | IGCM_debug_Verif_Exit_Post |
|---|
| 801 | done |
|---|
| 802 | done |
|---|
| 803 | fi |
|---|
| 804 | fi |
|---|
| 805 | |
|---|
| 806 | # WE CAN CONCATENATE FILES AT THIS POINT |
|---|
| 807 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
|---|
| 808 | Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end) |
|---|
| 809 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
|---|
| 810 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
|---|
| 811 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
|---|
| 812 | |
|---|
| 813 | liste_coord=" " |
|---|
| 814 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
|---|
| 815 | liste_coord=${liste_coord}${axis}"," |
|---|
| 816 | done |
|---|
| 817 | |
|---|
| 818 | # Time axis must be the last dimension |
|---|
| 819 | time_axis=${axis} |
|---|
| 820 | |
|---|
| 821 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
|---|
| 822 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
|---|
| 823 | # |
|---|
| 824 | if [ "${FLAG_B}" = "TRUE" ] ; then |
|---|
| 825 | # WE CONCATENATE WITH EXISTING FILES |
|---|
| 826 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
|---|
| 827 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
|---|
| 828 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
|---|
| 829 | # |
|---|
| 830 | IGCM_sys_Rm ${file1} |
|---|
| 831 | if [ ! "${DEPOT}" = "TRUE" ] ; then |
|---|
| 832 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
|---|
| 833 | # "${file1} = file_before ? |
|---|
| 834 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
|---|
| 835 | fi |
|---|
| 836 | |
|---|
| 837 | ExitFlag=false |
|---|
| 838 | else |
|---|
| 839 | # OR NOT |
|---|
| 840 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
|---|
| 841 | fi |
|---|
| 842 | |
|---|
| 843 | # |
|---|
| 844 | if [ "${DEPOT}" = "TRUE" ] ; then |
|---|
| 845 | # WE PUT FINAL FILE ON FILE SYSTEM |
|---|
| 846 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
|---|
| 847 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
|---|
| 848 | # |
|---|
| 849 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
|---|
| 850 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
|---|
| 851 | if [ ! "X${file1}" = "X" ] ; then |
|---|
| 852 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
|---|
| 853 | fi |
|---|
| 854 | # |
|---|
| 855 | if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then |
|---|
| 856 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
|---|
| 857 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
|---|
| 858 | # |
|---|
| 859 | # Compute yearly average considering calendar |
|---|
| 860 | # and set date of the mid year to 01/07 at 00:00 |
|---|
| 861 | IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm -selvar,${var} ${file_out} ${file_out_YE} |
|---|
| 862 | # Extract all ancillary variables except $var, they will be appended after the cdo command |
|---|
| 863 | # Needed because cdo applies calculs on all variables |
|---|
| 864 | IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc |
|---|
| 865 | # This will remove the time axis because cdo rewrites severely with only considered useful variables |
|---|
| 866 | IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc 2>/dev/null |
|---|
| 867 | if [ $? -eq 0 ] ; then |
|---|
| 868 | # Now append all ancillary variables if previous cdo operator ok |
|---|
| 869 | IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE} |
|---|
| 870 | fi |
|---|
| 871 | |
|---|
| 872 | # Put global history attribut |
|---|
| 873 | IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE} |
|---|
| 874 | # |
|---|
| 875 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
|---|
| 876 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
|---|
| 877 | IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc |
|---|
| 878 | fi |
|---|
| 879 | # |
|---|
| 880 | IGCM_sys_Rm ${file_out} |
|---|
| 881 | ExitFlag=false |
|---|
| 882 | # |
|---|
| 883 | fi |
|---|
| 884 | # |
|---|
| 885 | done # for var in ${liste_var} ; do |
|---|
| 886 | IGCM_sys_Rm ${liste_file_tmp[*]} |
|---|
| 887 | done # for file in ${liste_file_brut} do |
|---|
| 888 | done # for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 889 | # GO AHEAD IN DEEPEST LOOP |
|---|
| 890 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
|---|
| 891 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
|---|
| 892 | # FINISH |
|---|
| 893 | |
|---|
| 894 | # DODS copy |
|---|
| 895 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 896 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
|---|
| 897 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
|---|
| 898 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
|---|
| 899 | done |
|---|
| 900 | done |
|---|
| 901 | |
|---|
| 902 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
|---|
| 903 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
|---|
| 904 | |
|---|
| 905 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
|---|
| 906 | export listVarEnv |
|---|
| 907 | |
|---|
| 908 | #D- |
|---|
| 909 | # -------------------------------------------------------------------- |
|---|
| 910 | #D- Test if all was right |
|---|
| 911 | # -------------------------------------------------------------------- |
|---|
| 912 | IGCM_debug_Verif_Exit_Post |
|---|
| 913 | # -------------------------------------------------------------------- |
|---|
| 914 | #D- Submit MONITORING |
|---|
| 915 | # -------------------------------------------------------------------- |
|---|
| 916 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
|---|
| 917 | Script_Post_Output=monitoring.${PeriodDateEnd} |
|---|
| 918 | IGCM_sys_QsubPost monitoring |
|---|
| 919 | fi |
|---|
| 920 | |
|---|
| 921 | #D- |
|---|
| 922 | # -------------------------------------------------------------------- |
|---|
| 923 | #D- Update the run.card |
|---|
| 924 | # -------------------------------------------------------------------- |
|---|
| 925 | if [ ${StandAlone} != true ] ; then |
|---|
| 926 | # Put in run.card end period of time series |
|---|
| 927 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
|---|
| 928 | # We have finish the job ! |
|---|
| 929 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
|---|
| 930 | fi |
|---|
| 931 | |
|---|
| 932 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
|---|
| 933 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
|---|
| 934 | |
|---|
| 935 | date |
|---|
