[2] | 1 | #-Q- platine #!/usr/bin/ksh |
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[196] | 2 | #-Q- platine ################### |
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[2] | 3 | #-Q- platine ## PLATINE CEA ## |
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[196] | 4 | #-Q- platine ################### |
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[2] | 5 | #-Q- platine #BSUB -J TS # Nom du job |
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| 6 | #-Q- platine #BSUB -N # message a la fin du job |
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| 7 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 8 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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[149] | 9 | #-Q- platine #BSUB -q post # Passage en queue post |
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[59] | 10 | #-Q- sx8brodie #!/bin/ksh |
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[2] | 11 | #-Q- sx8brodie ####################### |
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| 12 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 13 | #-Q- sx8brodie ####################### |
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[58] | 14 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 15 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
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[58] | 16 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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[62] | 17 | #-Q- sx8brodie # @ job_name = TS |
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[58] | 18 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 19 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 20 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 21 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 22 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 23 | #-Q- sx8brodie # @ notification = error |
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[213] | 24 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[68] | 25 | #-Q- aix6 #!/bin/ksh |
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| 26 | #-Q- aix6 ####################### |
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| 27 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 28 | #-Q- aix6 ####################### |
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| 29 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 30 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
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[68] | 31 | #-Q- aix6 # Nom du travail LoadLeveler |
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[78] | 32 | #-Q- aix6 # @ job_name = TS |
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[68] | 33 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 34 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 35 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 36 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 37 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 38 | #-Q- aix6 # @ notification = error |
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[213] | 39 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[68] | 40 | #-Q- aix6 # @ queue |
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[58] | 41 | #-Q- sx8brodie # @ queue |
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[2] | 42 | #-Q- sx8mercure #!/bin/ksh |
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| 43 | #-Q- sx8mercure ###################### |
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| 44 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 45 | #-Q- sx8mercure ###################### |
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| 46 | #-Q- sx8mercure #PBS -N TS # Nom du job |
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| 47 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 48 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 49 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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[189] | 50 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
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[2] | 51 | #-Q- sx8mercure #PBS -q scalaire |
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[172] | 52 | #-Q- sx9mercure #!/bin/ksh |
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| 53 | #-Q- sx9mercure ###################### |
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| 54 | #-Q- sx9mercure ## SX9MERCURE CEA ## |
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| 55 | #-Q- sx9mercure ###################### |
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[257] | 56 | #-Q- sx9mercure #PBS -N TS # Nom du job |
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| 57 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 58 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 59 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 60 | #-Q- sx9mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
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| 61 | #-Q- sx9mercure #PBS -q scal-new |
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[222] | 62 | #-Q- titane #!/bin/ksh |
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| 63 | #-Q- titane ###################### |
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| 64 | #-Q- titane ## TITANE CEA ## |
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| 65 | #-Q- titane ###################### |
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| 66 | #-Q- titane #MSUB -r TS # Nom du job |
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| 67 | #-Q- titane #MSUB -N 1 # Reservation du noeud |
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| 68 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 69 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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| 70 | #-Q- titane #MSUB -E "-j o" |
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| 71 | #-Q- titane #MSUB -E "-S /bin/ksh" |
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| 72 | #-Q- titane ##MSUB -e nco.out # Sortie standard |
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| 73 | #-Q- titane ##MSUB -o nco.out # Sortie standard |
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[2] | 74 | #-Q- default #!/bin/ksh |
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| 75 | #-Q- default ################## |
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| 76 | #-Q- default ## DEFAULT HOST ## |
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| 77 | #-Q- default ################## |
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| 78 | |
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[108] | 79 | # $Date$ |
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| 80 | # $Author$ |
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| 81 | # $Revision$ |
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| 82 | # IPSL (2006) |
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| 83 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 84 | |
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| 85 | #set -eu |
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[2] | 86 | #set -vx |
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| 87 | |
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| 88 | date |
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| 89 | |
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| 90 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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[108] | 91 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[2] | 92 | |
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| 93 | ######################################################################## |
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| 94 | |
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| 95 | #D- Flag to determine if this job in a standalone mode |
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| 96 | #D- Default : value from AA_job if any |
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| 97 | StandAlone=${StandAlone:=true} |
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| 98 | |
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[206] | 99 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 100 | #D- Default : value from AA_job if any |
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[229] | 101 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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| 102 | # WARNING for StandAlone used : To run this script on some machine, |
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| 103 | # you must check MirrorlibIGCM variable in sys library. |
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| 104 | # If this variable is true, you must use libIGCM_POST path instead |
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| 105 | # of your running libIGCM directory. |
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[206] | 106 | |
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| 107 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
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[213] | 108 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
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[209] | 109 | CompletedFlag=${CompletedFlag:=} |
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[135] | 110 | |
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[213] | 111 | #D- Flag to determine task type this script will perform. |
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| 112 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
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| 113 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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[257] | 114 | TsTask=${TsTask:=2D} |
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[213] | 115 | |
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| 116 | #D- Flag to determine if rebuild process has been performed asynchronously |
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| 117 | #D- Possible value true or false. |
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| 118 | #D- If true raw files has allready been patched by rebuild job |
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| 119 | #D- If false create_ts will patch the raw files |
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| 120 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 121 | RebuildFrequency=${RebuildFrequency:=true} |
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| 122 | |
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[2] | 123 | #D- Flag to determine job's output directory |
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| 124 | #D- Default : value from libIGCM_post.ksh if any |
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| 125 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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| 126 | |
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| 127 | #D- Increased verbosity (1, 2, 3) |
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| 128 | #D- Default : value from AA_job if any |
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| 129 | Verbosity=${Verbosity:=3} |
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| 130 | |
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| 131 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 132 | #D- Default : value from AA_job if any |
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| 133 | DEBUG_debug=${DEBUG_debug:=false} |
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| 134 | |
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| 135 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 136 | #D- Default : value from atmospheric driver if any |
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[254] | 137 | RESOL_ATM=ALL |
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[2] | 138 | |
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[257] | 139 | #D- Flag to determine surface resolution |
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| 140 | #D- Default : value from surface driver if any |
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| 141 | RESOL_SRF=ALL |
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| 142 | |
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| 143 | #D- Flag to determine surface resolution |
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| 144 | #D- Default : value from surface driver if any |
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| 145 | RESOL_SBG=ALL |
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| 146 | |
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[2] | 147 | #D- TEMPORARY Flag to determine ocean resolution |
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| 148 | #D- Default : value from ocean driver if any |
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| 149 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 150 | |
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| 151 | #D- TEMPORARY Flag to determine ice resolution |
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| 152 | #D- Default : value from ice driver if any |
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| 153 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 154 | |
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[178] | 155 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 156 | #D- Default : value from ice driver if any |
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| 157 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 158 | |
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[2] | 159 | ######################################################################## |
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| 160 | |
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[108] | 161 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 162 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 163 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 164 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 165 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 166 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 167 | #------- |
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| 168 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[2] | 169 | |
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| 170 | ######################################################################## |
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| 171 | |
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| 172 | #set -vx |
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| 173 | |
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| 174 | # Useful cleaning function |
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| 175 | MENAGE () |
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[81] | 176 | { |
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| 177 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
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[2] | 178 | } |
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| 179 | |
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| 180 | ######################################################################## |
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| 181 | |
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[202] | 182 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[2] | 183 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 184 | |
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| 185 | if [ ${StandAlone} = true ] ; then |
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| 186 | CARD_DIR=${SUBMIT_DIR} |
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| 187 | else |
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| 188 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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| 189 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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| 190 | fi |
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| 191 | |
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| 192 | # |
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| 193 | # First of all |
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| 194 | # |
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| 195 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 196 | typeset option |
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| 197 | for option in ${config_UserChoices[*]} ; do |
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| 198 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 199 | done |
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| 200 | # |
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| 201 | echo |
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| 202 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 203 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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| 204 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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| 205 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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| 206 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 207 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 208 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 209 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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| 210 | echo |
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| 211 | |
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| 212 | #================================== |
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| 213 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 214 | # |
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[149] | 215 | # Determine component to take care of depending on kind of task create_ts will perform |
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[2] | 216 | # |
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[149] | 217 | ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = XChunck3D ] ) && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[2] | 218 | # |
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[149] | 219 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
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| 220 | # |
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[2] | 221 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 222 | # |
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| 223 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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[149] | 224 | # |
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| 225 | # Determine Dimension of the produced time series : 2D or 3D |
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| 226 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
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| 227 | Dimension=2D |
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| 228 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
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| 229 | Dimension=3D |
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| 230 | else |
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| 231 | Dimension="" |
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| 232 | fi |
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[2] | 233 | |
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[149] | 234 | |
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[2] | 235 | ######################################################################## |
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| 236 | # |
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| 237 | # Depending on requested time series fill following variables : |
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| 238 | # |
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| 239 | # - LISTE_FILE_${comp}[*] |
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| 240 | # - LISTE_VARS_${file}[*] |
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| 241 | # - LISTE_AXIS_${file}[*] |
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| 242 | # - LISTE_PATCH_${file}[*] |
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| 243 | ######################################################################## |
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| 244 | |
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| 245 | # |
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| 246 | # For each selected component determine which files need post-processing |
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| 247 | # |
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| 248 | DoJob=false |
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| 249 | for comp in ${config_ListOfComponents[*]} ; do |
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| 250 | # |
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| 251 | ActiveComp=false |
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| 252 | # |
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| 253 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 254 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 255 | # |
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| 256 | card=${CARD_DIR}/COMP/${compname}.card |
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[149] | 257 | |
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[2] | 258 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 259 | # |
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| 260 | ListFilesName=${compname}_OutputFiles_List |
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| 261 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 262 | # |
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| 263 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 264 | # |
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| 265 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 266 | # |
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| 267 | # INITIALISATION |
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| 268 | # |
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[149] | 269 | typeset i |
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| 270 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = XChunck3D ] ) ; then |
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| 271 | ((NbFiles=${FlagToRead})) |
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[243] | 272 | ((i=${NbFiles})) |
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[149] | 273 | else |
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| 274 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[243] | 275 | i=2 |
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[149] | 276 | fi |
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[2] | 277 | # |
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[243] | 278 | until [ $i -gt $NbFiles ]; do |
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[2] | 279 | # |
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[243] | 280 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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[2] | 281 | # |
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| 282 | if [ X${flag_post} != XNONE ] ; then |
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| 283 | # |
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[149] | 284 | # For each comp and each file who needs post-processing |
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| 285 | # determine which variables need time series. |
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| 286 | # |
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| 287 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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[236] | 288 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
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| 289 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
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[149] | 290 | # |
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[236] | 291 | # If TimeSeriesVars list is empty we skip |
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| 292 | # |
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[149] | 293 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 294 | # |
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| 295 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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[236] | 296 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
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[149] | 297 | (( i=i+3 )) |
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| 298 | continue |
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| 299 | # |
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| 300 | fi |
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[2] | 301 | # |
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[236] | 302 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
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| 303 | # |
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[237] | 304 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
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[236] | 305 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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[237] | 306 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
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[236] | 307 | (( i=i+3 )) |
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| 308 | continue |
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| 309 | fi |
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| 310 | # |
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| 311 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
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[149] | 312 | # |
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[189] | 313 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
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[149] | 314 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 315 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
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| 316 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
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| 317 | (( i=i+3 )) |
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| 318 | continue |
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| 319 | fi |
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| 320 | fi |
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| 321 | # |
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[236] | 322 | # Now on we know we have things to do |
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| 323 | # |
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| 324 | |
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| 325 | # |
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[149] | 326 | # We need coordinates axis to properly fill produced time series |
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| 327 | # |
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| 328 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
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| 329 | # |
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| 330 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
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| 331 | # |
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| 332 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
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| 333 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
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| 334 | (( i=i+3 )) |
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| 335 | continue |
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| 336 | # |
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| 337 | fi |
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| 338 | # |
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| 339 | # We need LIST of variables not allready produced (useful for standalone mode) |
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| 340 | # |
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| 341 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
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| 342 | case ${FlagDir} in |
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| 343 | *Y) TS_Dir=TS_YE ;; |
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| 344 | *M) TS_Dir=TS_MO ;; |
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| 345 | *D) TS_Dir=TS_DA ;; |
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| 346 | HF) TS_Dir=TS_HF ;; |
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| 347 | INS) TS_Dir=TS_INS ;; |
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| 348 | esac |
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| 349 | # |
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| 350 | count=0 |
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| 351 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
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| 352 | # |
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| 353 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
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| 354 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
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| 355 | # |
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| 356 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
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| 357 | if [ ! $? = 0 ] ; then |
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| 358 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
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| 359 | ActiveComp=true |
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| 360 | (( count = count + 1 )) |
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| 361 | fi |
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| 362 | done |
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| 363 | # |
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| 364 | if [ ${count} -gt 0 ] ; then |
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| 365 | # |
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| 366 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
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| 367 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
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| 368 | # |
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[168] | 369 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
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[149] | 370 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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| 371 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
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| 372 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
---|
| 373 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
---|
| 374 | if [ Xload${Patch} != X ] ; then |
---|
| 375 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
---|
| 376 | eval load${Patch}=loaded |
---|
| 377 | fi |
---|
| 378 | done |
---|
| 379 | fi |
---|
| 380 | fi |
---|
| 381 | fi |
---|
[2] | 382 | fi |
---|
[149] | 383 | (( i=i+3 )) |
---|
[2] | 384 | done |
---|
| 385 | fi |
---|
[149] | 386 | # |
---|
[2] | 387 | if [ ${ActiveComp} = true ] ; then |
---|
| 388 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
---|
| 389 | fi |
---|
| 390 | done |
---|
| 391 | |
---|
| 392 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
---|
| 393 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
---|
| 394 | |
---|
| 395 | ######################################################################## |
---|
| 396 | # |
---|
| 397 | # DEFINE DATE FUNCTIONS |
---|
| 398 | # |
---|
| 399 | ######################################################################## |
---|
| 400 | |
---|
| 401 | # Give the end of the next $1 period from $2 date |
---|
| 402 | function create_ts_next_date { |
---|
| 403 | IGCM_debug_PushStack "create_ts_next_date" $@ |
---|
[88] | 404 | typeset Length |
---|
[29] | 405 | case ${config_UserChoices_PeriodLength} in |
---|
| 406 | *Y|*y) |
---|
| 407 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
---|
| 408 | IGCM_date_GetYearMonth ${1} year month |
---|
| 409 | (( Length=0 )) |
---|
| 410 | (( i=0 )) |
---|
| 411 | until [ $i -ge $PeriodLengthInYears ] ; do |
---|
| 412 | (( Length = Length + $( IGCM_date_DaysInYear $(( year + i + 1 )) ) )) |
---|
| 413 | (( i=i+1 )) |
---|
| 414 | done |
---|
| 415 | ;; |
---|
| 416 | *M|*m) |
---|
| 417 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
---|
| 418 | IGCM_date_GetYearMonth ${1} year month |
---|
[64] | 419 | (( year0 = year )) |
---|
[29] | 420 | if [ $(( month + 1 )) -lt 13 ] ; then |
---|
| 421 | month0=$(( month + 1 )) |
---|
[2] | 422 | else |
---|
[29] | 423 | month0=$(( month + 1 - 12 )) |
---|
| 424 | (( year = year0 + 1 )) |
---|
| 425 | fi |
---|
| 426 | (( Length=0 )) |
---|
| 427 | (( i=0 )) |
---|
| 428 | until [ $i -ge $PeriodLengthInMonths ] ; do |
---|
| 429 | if [ $(( month0 + i )) -lt 13 ] ; then |
---|
| 430 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month0 + i )) ) )) |
---|
| 431 | else |
---|
| 432 | (( year = year0 + 1 )) |
---|
| 433 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month0 + i - 12 )) ) )) |
---|
| 434 | fi |
---|
| 435 | (( i=i+1 )) |
---|
| 436 | done |
---|
| 437 | ;; |
---|
[2] | 438 | *D|*d) |
---|
[29] | 439 | Length=$( echo ${config_UserChoices_PeriodLength} | sed -e "s/[dD]//" ) ;; |
---|
[2] | 440 | *) |
---|
[29] | 441 | IGCM_debug_Exit "create_ts " ${config_UserChoices_PeriodLength} " invalid PeriodLength : choose in 1Y, *M, *D." |
---|
[2] | 442 | IGCM_debug_Verif_Exit_Post ;; |
---|
| 443 | esac |
---|
| 444 | echo ${Length} |
---|
| 445 | |
---|
| 446 | IGCM_debug_PopStack "create_ts_next_date" |
---|
| 447 | } |
---|
| 448 | |
---|
| 449 | # Give the end of the actual $1 period from $2 date |
---|
| 450 | function create_ts_begin_date { |
---|
| 451 | IGCM_debug_PushStack "create_ts_begin_date" $@ |
---|
[88] | 452 | typeset Length |
---|
[29] | 453 | case ${config_UserChoices_PeriodLength} in |
---|
| 454 | *Y|*y) |
---|
| 455 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
---|
| 456 | IGCM_date_GetYearMonth ${1} year month |
---|
| 457 | if [ X${2} = Xend ] ; then |
---|
| 458 | (( year = year - PeriodLengthInYears + 1)) |
---|
| 459 | fi |
---|
| 460 | (( Length=0 )) |
---|
| 461 | (( i=0 )) |
---|
| 462 | until [ $i -ge $PeriodLengthInYears ] ; do |
---|
| 463 | (( Length = Length + $( IGCM_date_DaysInYear $(( year + i )) ) )) |
---|
| 464 | (( i=i+1 )) |
---|
| 465 | done |
---|
| 466 | ;; |
---|
| 467 | *M|*m) |
---|
| 468 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
---|
| 469 | IGCM_date_GetYearMonth ${1} year month |
---|
| 470 | if [ X${2} = Xend ] ; then |
---|
[64] | 471 | (( month = month - PeriodLengthInMonths + 1 )) |
---|
[29] | 472 | fi |
---|
[64] | 473 | (( year0 = year )) |
---|
[29] | 474 | if [ $month -le 0 ] ; then |
---|
[64] | 475 | (( month = month + 12 )) |
---|
[29] | 476 | year=$( printf "%04i\n" $(( year - 1 )) ) |
---|
| 477 | fi |
---|
| 478 | month=$( printf "%02i\n" ${month} ) |
---|
| 479 | (( Length=0 )) |
---|
| 480 | (( i=0 )) |
---|
| 481 | until [ $i -ge $PeriodLengthInMonths ] ; do |
---|
| 482 | if [ $(( month + i )) -lt 13 ] ; then |
---|
| 483 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month + i )) ) )) |
---|
| 484 | else |
---|
| 485 | (( year = year0 + 1 )) |
---|
| 486 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) )) |
---|
| 487 | fi |
---|
| 488 | (( i=i+1 )) |
---|
| 489 | done |
---|
| 490 | ;; |
---|
[2] | 491 | *D|*d) |
---|
[29] | 492 | Length=$( echo ${config_UserChoices_PeriodLength} | sed -e "s/[dD]//" ) ;; |
---|
[2] | 493 | *) |
---|
[29] | 494 | IGCM_debug_Exit "create_ts " ${config_UserChoices_PeriodLength} " invalid PeriodLength : choose in 1Y, *M, *D." |
---|
[2] | 495 | IGCM_debug_Verif_Exit_Post ;; |
---|
| 496 | esac |
---|
| 497 | echo ${Length} |
---|
| 498 | |
---|
| 499 | IGCM_debug_PopStack "create_ts_begin_date" |
---|
| 500 | } |
---|
| 501 | |
---|
| 502 | ######################################################################## |
---|
| 503 | # |
---|
| 504 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
---|
| 505 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
---|
| 506 | # |
---|
| 507 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
---|
| 508 | # - especially for IDRiS |
---|
| 509 | # - no special protection against "command too long" ! |
---|
| 510 | # - libIGCM_sys should handle that or modify following code part |
---|
| 511 | # |
---|
| 512 | ######################################################################## |
---|
| 513 | |
---|
| 514 | if [ ${StandAlone} != true ] ; then |
---|
| 515 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
| 516 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
| 517 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
---|
| 518 | |
---|
[149] | 519 | #if [ X${Running_Flag} = Xy ] ; then |
---|
| 520 | # # Time Series Job allready running |
---|
| 521 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
| 522 | # exit |
---|
| 523 | #fi |
---|
[2] | 524 | # Now run.card know we are running |
---|
[149] | 525 | |
---|
| 526 | |
---|
| 527 | |
---|
| 528 | |
---|
[2] | 529 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
[149] | 530 | |
---|
| 531 | |
---|
| 532 | |
---|
| 533 | |
---|
| 534 | |
---|
[2] | 535 | # Get information from last execution |
---|
[149] | 536 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
| 537 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
| 538 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
[2] | 539 | fi |
---|
| 540 | |
---|
| 541 | # Is it the first submission or not ? |
---|
[149] | 542 | |
---|
| 543 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
[2] | 544 | # First Time Series Submission |
---|
| 545 | FIRST_PASS=TRUE |
---|
[29] | 546 | Length=$( create_ts_begin_date ${DateBegin} begin) |
---|
[2] | 547 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
| 548 | else |
---|
| 549 | # Last Completed Time Series |
---|
| 550 | FIRST_PASS=FALSE |
---|
| 551 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
| 552 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
| 553 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 554 | # |
---|
| 555 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 556 | # |
---|
| 557 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 558 | # |
---|
[81] | 559 | #set -A liste_file |
---|
| 560 | unset liste_file |
---|
[2] | 561 | # |
---|
| 562 | file_path=${R_SAVE}/${comp}/Analyse |
---|
| 563 | # |
---|
| 564 | i=0 |
---|
| 565 | file=${NULL_STR} |
---|
| 566 | # |
---|
| 567 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 568 | # |
---|
| 569 | # Determine in which output can we find file |
---|
| 570 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
| 571 | # |
---|
| 572 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 573 | case ${FlagDir} in |
---|
[29] | 574 | *Y) TS_Dir=TS_YE ;; |
---|
| 575 | *M) TS_Dir=TS_MO ;; |
---|
| 576 | *D) TS_Dir=TS_DA ;; |
---|
| 577 | HF) TS_Dir=TS_HF ;; |
---|
| 578 | INS) TS_Dir=TS_INS ;; |
---|
[2] | 579 | esac |
---|
| 580 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 581 | # |
---|
[81] | 582 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 583 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
[2] | 584 | # |
---|
| 585 | done |
---|
| 586 | done |
---|
| 587 | if [ X${file} != X${NULL_STR} ] ; then |
---|
| 588 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[108] | 589 | ExitFlag=false |
---|
[2] | 590 | IGCM_debug_Verif_Exit_Post |
---|
| 591 | fi |
---|
| 592 | done |
---|
| 593 | # |
---|
| 594 | LEVEL=0 |
---|
| 595 | # |
---|
| 596 | fi |
---|
| 597 | |
---|
| 598 | ######################################################################## |
---|
| 599 | # |
---|
| 600 | # DEFINE LOOP PARAMETERS |
---|
| 601 | # |
---|
| 602 | ######################################################################## |
---|
| 603 | |
---|
| 604 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
| 605 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
| 606 | |
---|
| 607 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
| 608 | |
---|
| 609 | if [ ${DoJob} = true ] ; then |
---|
| 610 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 611 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
[29] | 612 | Length=$( create_ts_next_date ${DATE_COUNT} ) |
---|
[2] | 613 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
| 614 | done |
---|
| 615 | else |
---|
| 616 | NBRE_FILE_TOT=0 |
---|
| 617 | fi |
---|
| 618 | |
---|
| 619 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 620 | NBRE_TOUR=1 |
---|
| 621 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
| 622 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
| 623 | else |
---|
| 624 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
| 625 | fi |
---|
| 626 | |
---|
| 627 | CURRENT_LOOP=1 |
---|
| 628 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
| 629 | # WE HAVE 3 LEVELS |
---|
| 630 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 631 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 632 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 633 | |
---|
| 634 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
| 635 | |
---|
| 636 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 637 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 638 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
| 639 | |
---|
| 640 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
| 641 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
| 642 | else |
---|
[29] | 643 | Length=$( create_ts_next_date ${DATE_FIN_JOB_B_LOOP} ) |
---|
[2] | 644 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 645 | fi |
---|
| 646 | |
---|
| 647 | DATE_FIN=${PeriodDateEnd} |
---|
| 648 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
| 649 | |
---|
| 650 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 651 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 652 | |
---|
| 653 | LEVEL=1 |
---|
| 654 | DEPOT="TRUE" |
---|
| 655 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 656 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 657 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 658 | |
---|
| 659 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
[29] | 660 | Length=$( create_ts_next_date ${DATE_FIN_JOB_B_LOOP} ) |
---|
[2] | 661 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 662 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 663 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
| 664 | else |
---|
[29] | 665 | Length=$( create_ts_next_date ${DATE_FIN} ) |
---|
[2] | 666 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 667 | fi |
---|
| 668 | |
---|
| 669 | (( TotLength = 0 )) |
---|
| 670 | COMPTEUR=1 |
---|
| 671 | DATE_LOOP=${DATE_COURANTE} |
---|
| 672 | |
---|
| 673 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 674 | # |
---|
[29] | 675 | Length=$( create_ts_next_date ${DATE_LOOP} ) |
---|
[2] | 676 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 677 | (( TotLength = TotLength + Length )) |
---|
| 678 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 679 | # |
---|
| 680 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 681 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
| 682 | |
---|
| 683 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 684 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 685 | DEPOT="FALSE" |
---|
| 686 | LEVEL=2 |
---|
| 687 | else |
---|
| 688 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
[149] | 689 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
[2] | 690 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 691 | |
---|
[29] | 692 | Length=$( create_ts_next_date ${DATE_FIN} ) |
---|
[2] | 693 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 694 | DATE_FIN=${PeriodDateEnd} |
---|
| 695 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 696 | |
---|
| 697 | LEVEL=3 |
---|
| 698 | DEPOT="TRUE" |
---|
| 699 | FLAG_B="TRUE" |
---|
| 700 | fi |
---|
| 701 | |
---|
| 702 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 703 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 704 | # |
---|
| 705 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 706 | # |
---|
| 707 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 708 | # |
---|
| 709 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 710 | # |
---|
| 711 | i=0 |
---|
| 712 | # |
---|
| 713 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 714 | # |
---|
| 715 | # Determine in which output can we find file |
---|
| 716 | # IE : Output/MO or Output/DA or ... |
---|
| 717 | # |
---|
| 718 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 719 | case ${FlagDir} in |
---|
[29] | 720 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
| 721 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
[2] | 722 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 723 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 724 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 725 | *) |
---|
| 726 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
| 727 | IGCM_sys_Exit "Job create_ts" ;; |
---|
| 728 | esac |
---|
| 729 | |
---|
| 730 | # Initialize array |
---|
[81] | 731 | #set -A liste_file |
---|
| 732 | #set -A liste_file_tmp |
---|
| 733 | unset liste_file |
---|
| 734 | unset liste_file_tmp |
---|
[2] | 735 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
| 736 | |
---|
| 737 | COMPTEUR=1 |
---|
| 738 | DATE_LOOP=${DATE_COURANTE} |
---|
| 739 | |
---|
| 740 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 741 | # |
---|
[29] | 742 | Length1=$( create_ts_begin_date ${DATE_LOOP} end) |
---|
[2] | 743 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
| 744 | |
---|
[29] | 745 | Length2=$( create_ts_next_date ${DATE_LOOP} end) |
---|
[2] | 746 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
| 747 | |
---|
[81] | 748 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 749 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 750 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 751 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
[2] | 752 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 753 | # |
---|
| 754 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 755 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
| 756 | |
---|
| 757 | # Get selected files |
---|
| 758 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[108] | 759 | ExitFlag=false |
---|
[2] | 760 | IGCM_debug_Verif_Exit_Post |
---|
| 761 | |
---|
| 762 | # Apply IGCM_Patch if needed |
---|
[168] | 763 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
[149] | 764 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 765 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
| 766 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 767 | IGCM_${Patch} ${file_t} |
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| 768 | done |
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[2] | 769 | done |
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[149] | 770 | fi |
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[2] | 771 | fi |
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| 772 | |
---|
| 773 | # WE CAN CONCATENATE FILES AT THIS POINT |
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| 774 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
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[29] | 775 | Length=$( create_ts_begin_date ${DATE_COURANTE} end) |
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[2] | 776 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
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| 777 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
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| 778 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
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| 779 | |
---|
| 780 | liste_coord=" " |
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| 781 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
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| 782 | liste_coord=${liste_coord}${axis}"," |
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| 783 | done |
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| 784 | |
---|
| 785 | # Time axis must be the last dimension |
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| 786 | time_axis=${axis} |
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| 787 | |
---|
| 788 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 789 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
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| 790 | # |
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| 791 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
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| 792 | # |
---|
| 793 | # # Change time axis name to be CF compliant |
---|
| 794 | # if [ ${time_axis} != time_counter ]; then |
---|
| 795 | # IGCM_sys_ncrename -O -v ${time_axis},time_counter ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
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| 796 | # fi |
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| 797 | # |
---|
| 798 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 799 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 800 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 801 | file2=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 802 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
| 803 | IGCM_sys_ncrcat --hst ${file1} ${file2} ${file_out} |
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| 804 | # |
---|
| 805 | IGCM_sys_Rm ${file1} ${file2} |
---|
| 806 | fi |
---|
| 807 | # |
---|
| 808 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
| 809 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 810 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 811 | #${ncatted} -a modulo,time_counter,c,c," " ${file_out} |
---|
| 812 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
| 813 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 814 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
| 815 | IGCM_sys_Rm ${file_out} |
---|
| 816 | # |
---|
| 817 | fi |
---|
| 818 | # |
---|
[108] | 819 | ExitFlag=false |
---|
[2] | 820 | IGCM_debug_Verif_Exit_Post |
---|
| 821 | done # for var in ${liste_var} ; do |
---|
| 822 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
| 823 | done # for file in ${liste_file_brut} do |
---|
| 824 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
[108] | 825 | ExitFlag=false |
---|
[2] | 826 | IGCM_debug_Verif_Exit_Post |
---|
| 827 | # GO AHEAD IN DEEPEST LOOP |
---|
| 828 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
| 829 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
| 830 | # FINISH |
---|
| 831 | |
---|
| 832 | # DODS copy |
---|
| 833 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[67] | 834 | for TS_Dir in TS_YE TS_MO TS_DA TS_HF TS_INS ; do |
---|
| 835 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 836 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
[2] | 837 | done |
---|
| 838 | done |
---|
| 839 | |
---|
| 840 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
[213] | 841 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
[2] | 842 | |
---|
[213] | 843 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
[2] | 844 | export listVarEnv |
---|
| 845 | |
---|
| 846 | #D- |
---|
| 847 | # -------------------------------------------------------------------- |
---|
| 848 | #D- Test if all was right |
---|
| 849 | # -------------------------------------------------------------------- |
---|
| 850 | IGCM_debug_Verif_Exit_Post |
---|
| 851 | # -------------------------------------------------------------------- |
---|
| 852 | #D- Submit MONITORING |
---|
| 853 | # -------------------------------------------------------------------- |
---|
[168] | 854 | ( [ X${TsTask} = X2D ] || [ X${TsTask} = X ] ) && IGCM_sys_QsubPost monitoring |
---|
[2] | 855 | |
---|
| 856 | #D- |
---|
| 857 | # -------------------------------------------------------------------- |
---|
| 858 | #D- Update the run.card |
---|
| 859 | # -------------------------------------------------------------------- |
---|
| 860 | if [ ${StandAlone} != true ] ; then |
---|
| 861 | # Put in run.card end period of time series |
---|
| 862 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
| 863 | # We have finish the job ! |
---|
| 864 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
| 865 | fi |
---|
[203] | 866 | |
---|
| 867 | # Clean RUN_DIR_PATH (necessary for cesium) |
---|
| 868 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
| 869 | |
---|
[2] | 870 | date |
---|