[2] | 1 | #-Q- platine #!/usr/bin/ksh |
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| 2 | #-Q- platine ################## |
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| 3 | #-Q- platine ## PLATINE CEA ## |
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| 4 | #-Q- platine ################## |
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| 5 | #-Q- platine #BSUB -J TS # Nom du job |
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| 6 | #-Q- platine #BSUB -N # message a la fin du job |
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| 7 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 8 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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| 9 | #-Q- sx8brodie ####################### |
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| 10 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 11 | #-Q- sx8brodie ####################### |
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| 12 | #-Q- sx8brodie #QSUB -r TS # Nom du job |
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| 13 | #-Q- sx8brodie #QSUB -lT 1:00:00 # limite en temps total |
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| 14 | #-Q- sx8brodie #QSUB -lt 1:00:00 # limite en temps par process |
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| 15 | #-Q- sx8brodie #QSUB -lM 1Gb |
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| 16 | #-Q- sx8brodie #QSUB -eo # rassemble standard error et output |
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| 17 | #-Q- sx8brodie #QSUB -J m |
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| 18 | #-Q- sx8brodie #QSUB -l mpp_p=4 |
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| 19 | #-Q- sx8brodie #QSUB -s /bin/ksh # shell du job |
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| 20 | #-Q- sx8mercure #!/bin/ksh |
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| 21 | #-Q- sx8mercure ###################### |
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| 22 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 23 | #-Q- sx8mercure ###################### |
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| 24 | #-Q- sx8mercure #PBS -N TS # Nom du job |
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| 25 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 26 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 27 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 28 | #-Q- sx8mercure #PBS -l cputim_job=2:00:00 # Limite temps a 2 heures |
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| 29 | #-Q- sx8mercure #PBS -q scalaire |
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| 30 | #-Q- default #!/bin/ksh |
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| 31 | #-Q- default ################## |
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| 32 | #-Q- default ## DEFAULT HOST ## |
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| 33 | #-Q- default ################## |
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| 34 | |
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| 35 | #set -vx |
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| 36 | |
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| 37 | date |
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| 38 | |
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| 39 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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| 40 | |
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| 41 | # $Date: 2008/04/03 10:35:05 $ |
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| 42 | # $Name: libIGCM_v1 $ |
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| 43 | # $Revision: 1.36 $ |
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| 44 | # IPSL (2006) |
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| 45 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 46 | |
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| 47 | ######################################################################## |
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| 48 | |
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| 49 | #D- Flag to determine if this job in a standalone mode |
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| 50 | #D- Default : value from AA_job if any |
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| 51 | StandAlone=${StandAlone:=true} |
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| 52 | |
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| 53 | #D- Flag to determine job's output directory |
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| 54 | #D- Default : value from libIGCM_post.ksh if any |
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| 55 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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| 56 | |
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| 57 | #D- Increased verbosity (1, 2, 3) |
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| 58 | #D- Default : value from AA_job if any |
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| 59 | Verbosity=${Verbosity:=3} |
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| 60 | |
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| 61 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 62 | #D- Default : value from AA_job if any |
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| 63 | DEBUG_debug=${DEBUG_debug:=false} |
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| 64 | |
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| 65 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 66 | #D- Default : value from AA_job if any |
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| 67 | libIGCM=${libIGCM:=/work/cont003/p86denv/PARA_SX8_ORCA2xLMD144142/Prelude/modipsl/libIGCM} |
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| 68 | |
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| 69 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 70 | #D- Default : value from atmospheric driver if any |
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| 71 | RESOL_ATM=${RESOL_ATM:=LMD144142} |
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| 72 | |
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| 73 | #D- TEMPORARY Flag to determine ocean resolution |
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| 74 | #D- Default : value from ocean driver if any |
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| 75 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 76 | |
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| 77 | #D- TEMPORARY Flag to determine ice resolution |
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| 78 | #D- Default : value from ice driver if any |
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| 79 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 80 | |
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| 81 | #D- Flag to determine surface resolution |
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| 82 | #D- Default : value from surface driver if any |
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| 83 | RESOL_SRF=${RESOL_SRF:=LMD144142} |
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| 84 | |
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| 85 | ######################################################################## |
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| 86 | |
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| 87 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh ; |
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| 88 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh #; IGCM_debug_Check |
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| 89 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh #; IGCM_card_Check |
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| 90 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh #; IGCM_date_Check |
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| 91 | |
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| 92 | ######################################################################## |
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| 93 | |
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| 94 | #set -vx |
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| 95 | |
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| 96 | # Max number of files we use with a command (ex : ncrcat, ...) |
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| 97 | UNIX_MAX_LIMIT=120 |
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| 98 | |
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| 99 | # Useful cleaning function |
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| 100 | MENAGE () |
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| 101 | { |
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| 102 | [ -f $3 ] & ( rm -f $1/$2 ;) |
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| 103 | } |
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| 104 | |
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| 105 | ######################################################################## |
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| 106 | |
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| 107 | #set -vx |
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| 108 | |
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| 109 | if [ ${DEBUG_debug} = true ] ; then |
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| 110 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 111 | echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." |
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| 112 | fi |
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| 113 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 114 | |
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| 115 | if [ ${StandAlone} = true ] ; then |
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| 116 | CARD_DIR=${SUBMIT_DIR} |
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| 117 | else |
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| 118 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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| 119 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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| 120 | fi |
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| 121 | |
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| 122 | # |
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| 123 | # First of all |
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| 124 | # |
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| 125 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 126 | typeset option |
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| 127 | for option in ${config_UserChoices[*]} ; do |
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| 128 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 129 | done |
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| 130 | # |
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| 131 | echo |
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| 132 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 133 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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| 134 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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| 135 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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| 136 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 137 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 138 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 139 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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| 140 | echo |
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| 141 | |
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| 142 | #================================== |
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| 143 | |
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| 144 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 145 | # |
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| 146 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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| 147 | # |
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| 148 | # Determine period for time series. Default : value from AA_job if any |
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| 149 | # |
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| 150 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 151 | # |
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| 152 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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| 153 | |
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| 154 | ######################################################################## |
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| 155 | # |
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| 156 | # Depending on requested time series fill following variables : |
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| 157 | # |
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| 158 | # - LISTE_FILE_${comp}[*] |
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| 159 | # - LISTE_VARS_${file}[*] |
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| 160 | # - LISTE_AXIS_${file}[*] |
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| 161 | # - LISTE_PATCH_${file}[*] |
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| 162 | ######################################################################## |
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| 163 | |
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| 164 | # |
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| 165 | # For each selected component determine which files need post-processing |
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| 166 | # |
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| 167 | DoJob=false |
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| 168 | for comp in ${config_ListOfComponents[*]} ; do |
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| 169 | # |
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| 170 | ActiveComp=false |
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| 171 | # |
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| 172 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 173 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 174 | # |
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| 175 | card=${CARD_DIR}/COMP/${compname}.card |
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| 176 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 177 | # |
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| 178 | ListFilesName=${compname}_OutputFiles_List |
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| 179 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 180 | # |
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| 181 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 182 | # |
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| 183 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 184 | # |
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| 185 | # INITIALISATION |
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| 186 | # |
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| 187 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 188 | typeset i=0 |
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| 189 | # |
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| 190 | until [ $i -eq $NbFiles ]; do |
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| 191 | # |
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| 192 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 193 | eval file_in=${file_in_} |
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| 194 | let $(( i_ = i+2 )) |
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| 195 | eval flag_post_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 196 | eval flag_post=${flag_post_} |
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| 197 | # |
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| 198 | if [ X${flag_post} != XNONE ] ; then |
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| 199 | # |
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| 200 | # Initialize ${flag_post}_${compname}_${post_freq} |
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| 201 | # |
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| 202 | eval ${flag_post}_${compname}_TimeSeriesFrequency=true |
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| 203 | fi |
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| 204 | let $(( i=i+3 )) |
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| 205 | done |
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| 206 | fi |
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| 207 | |
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| 208 | for element in $( set | grep Post_ | grep ${compname}_TimeSeriesFrequency | grep -i "=true" ) ; do |
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| 209 | # |
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| 210 | FILE=$( echo ${element} | awk -F "_${compname}" '{print $1}' | awk "-FPost_" '{print $2}' ) |
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| 211 | # |
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| 212 | # For each comp and each file who needs post-processing |
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| 213 | # determine which variables need time series. |
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| 214 | # |
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| 215 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars |
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| 216 | # |
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| 217 | if [ $( eval echo \$\{${compname}_Post_${FILE}_TimeSeriesVars} ) = ${NULL_STR} ] ; then |
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| 218 | # |
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| 219 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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| 220 | continue |
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| 221 | # |
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| 222 | fi |
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| 223 | # |
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| 224 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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| 225 | # |
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| 226 | # So we need coordinates axis to properly fill produced time series |
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| 227 | # |
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| 228 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
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| 229 | # |
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| 230 | if [ $( eval echo \$\{${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
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| 231 | # |
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| 232 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
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| 233 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
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| 234 | continue |
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| 235 | # |
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| 236 | fi |
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| 237 | # |
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| 238 | # CREATE LIST |
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| 239 | # |
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| 240 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
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| 241 | case ${FlagDir} in |
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| 242 | 1Y) TS_Dir=TS_YE ;; |
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| 243 | 1M) TS_Dir=TS_MO ;; |
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| 244 | 5D|1D) TS_Dir=TS_DA ;; |
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| 245 | HF) TS_Dir=TS_HF ;; |
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| 246 | INS) TS_Dir=TS_INS ;; |
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| 247 | esac |
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| 248 | |
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| 249 | count=0 |
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| 250 | for var in $( eval echo \$\{${compname}_Post_${FILE}_TimeSeriesVars[*]} ) ; do |
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| 251 | # |
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| 252 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
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| 253 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
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| 254 | # |
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| 255 | if [ ! -f ${DIRECTORY}/${TestedFile} ] ; then |
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| 256 | eval set +A LISTE_VARS_${FILE} \$\{LISTE_VARS_${FILE}[*]} ${var} |
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| 257 | ActiveComp=true |
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| 258 | (( count = count + 1 )) |
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| 259 | fi |
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| 260 | done |
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| 261 | |
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| 262 | if [ ${count} -gt 0 ] ; then |
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| 263 | # |
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| 264 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
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| 265 | eval set +A LISTE_AXIS_${FILE} \$\{${compname}_Post_${FILE}_GatherWithInternal[*]} |
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| 266 | eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]} |
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| 267 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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| 268 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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| 269 | if [ Xload${Patch} != X ] ; then |
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| 270 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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| 271 | eval load${Patch}=loaded |
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| 272 | fi |
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| 273 | done |
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| 274 | fi |
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| 275 | # |
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| 276 | fi |
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| 277 | done |
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| 278 | |
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| 279 | if [ ${ActiveComp} = true ] ; then |
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| 280 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
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| 281 | fi |
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| 282 | |
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| 283 | done |
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| 284 | |
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| 285 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
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| 286 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
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| 287 | |
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| 288 | ######################################################################## |
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| 289 | # |
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| 290 | # DEFINE DATE FUNCTIONS |
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| 291 | # |
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| 292 | ######################################################################## |
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| 293 | |
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| 294 | # Give the end of the next $1 period from $2 date |
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| 295 | function create_ts_next_date { |
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| 296 | IGCM_debug_PushStack "create_ts_next_date" $@ |
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| 297 | typeset year month Length |
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| 298 | case ${1} in |
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| 299 | 1Y|1y) |
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| 300 | IGCM_date_GetYearMonth ${2} year month |
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| 301 | Length=$( IGCM_date_DaysInYear $(( year + 1 )) ) ;; |
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| 302 | 1M|1m) |
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| 303 | IGCM_date_GetYearMonth ${2} year month |
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| 304 | if [ $month -lt 12 ] ; then |
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| 305 | Length=$( IGCM_date_DaysInMonth $year $(( month + 1 )) ) |
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| 306 | else |
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| 307 | Length=$( IGCM_date_DaysInMonth $(( year + 1 )) 1 ) |
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| 308 | fi ;; |
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| 309 | *D|*d) |
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| 310 | Length=$( echo ${1} | sed -e "s/[dD]//" ) ;; |
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| 311 | *) |
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| 312 | IGCM_debug_Exit "create_ts " ${1} " invalid PeriodLength : choose in 1Y, 1M, 5D, 1D." |
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| 313 | IGCM_debug_Verif_Exit_Post ;; |
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| 314 | esac |
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| 315 | echo ${Length} |
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| 316 | |
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| 317 | IGCM_debug_PopStack "create_ts_next_date" |
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| 318 | } |
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| 319 | |
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| 320 | # Give the end of the actual $1 period from $2 date |
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| 321 | function create_ts_begin_date { |
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| 322 | IGCM_debug_PushStack "create_ts_begin_date" $@ |
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| 323 | typeset year month Length |
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| 324 | case ${1} in |
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| 325 | 1Y|1y) |
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| 326 | IGCM_date_GetYearMonth ${2} year month |
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| 327 | Length=$( IGCM_date_DaysInYear $year ) ;; |
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| 328 | 1M|1m) |
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| 329 | IGCM_date_GetYearMonth ${2} year month |
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| 330 | Length=$( IGCM_date_DaysInMonth $year $month ) ;; |
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| 331 | *D|*d) |
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| 332 | Length=$( echo ${1} | sed -e "s/[dD]//" ) ;; |
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| 333 | *) |
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| 334 | IGCM_debug_Exit "create_ts " ${1} " invalid PeriodLength : choose in 1Y, 1M, 5D, 1D." |
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| 335 | IGCM_debug_Verif_Exit_Post ;; |
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| 336 | esac |
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| 337 | echo ${Length} |
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| 338 | |
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| 339 | IGCM_debug_PopStack "create_ts_begin_date" |
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| 340 | } |
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| 341 | |
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| 342 | ######################################################################## |
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| 343 | # |
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| 344 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
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| 345 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
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| 346 | # |
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| 347 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
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| 348 | # - especially for IDRiS |
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| 349 | # - no special protection against "command too long" ! |
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| 350 | # - libIGCM_sys should handle that or modify following code part |
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| 351 | # |
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| 352 | ######################################################################## |
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| 353 | |
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| 354 | if [ ${StandAlone} != true ] ; then |
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| 355 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
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| 356 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
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| 357 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
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| 358 | |
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| 359 | if [ X${Running_Flag} = Xy ] ; then |
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| 360 | # Time Series Job allready running |
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| 361 | IGCM_debug_Print 1 "Time Series Job allready running exit" |
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| 362 | exit |
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| 363 | fi |
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| 364 | # Now run.card know we are running |
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| 365 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
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| 366 | # Get information from last execution |
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| 367 | CompletedFlag=$( IGCM_sys_RshMaster \ |
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| 368 | "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
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| 369 | echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
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| 370 | fi |
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| 371 | |
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| 372 | # Is it the first submission or not ? |
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| 373 | if [ X${CompletedFlag} = X ] ; then |
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| 374 | # First Time Series Submission |
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| 375 | FIRST_PASS=TRUE |
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| 376 | Length=$( create_ts_begin_date ${config_UserChoices_PeriodLength} ${DateBegin} ) |
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| 377 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
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| 378 | else |
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| 379 | # Last Completed Time Series |
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| 380 | FIRST_PASS=FALSE |
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| 381 | DATE_FIN_JOB_B=${CompletedFlag} |
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| 382 | date=${DateBegin}_${DATE_FIN_JOB_B} |
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| 383 | for comp in ${config_ListOfComponents[*]} ; do |
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| 384 | # |
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| 385 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
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| 386 | # |
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| 387 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
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| 388 | # |
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| 389 | set -A liste_file |
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| 390 | # |
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| 391 | file_path=${R_SAVE}/${comp}/Analyse |
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| 392 | # |
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| 393 | i=0 |
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| 394 | file=${NULL_STR} |
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| 395 | # |
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| 396 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
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| 397 | # |
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| 398 | # Determine in which output can we find file |
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| 399 | # IE : Analyse/TS or Analyse/DA2TS or ... |
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| 400 | # |
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| 401 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
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| 402 | case ${FlagDir} in |
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| 403 | 1Y) TS_Dir=TS_YE ;; |
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| 404 | 1M) TS_Dir=TS_MO ;; |
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| 405 | 5D|1D) TS_Dir=TS_DA ;; |
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| 406 | HF) TS_Dir=TS_HF ;; |
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| 407 | INS) TS_Dir=TS_INS ;; |
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| 408 | esac |
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| 409 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
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| 410 | # |
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| 411 | set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
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| 412 | # |
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| 413 | done |
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| 414 | done |
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| 415 | if [ X${file} != X${NULL_STR} ] ; then |
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| 416 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
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| 417 | IGCM_debug_Verif_Exit_Post |
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| 418 | fi |
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| 419 | done |
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| 420 | # |
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| 421 | LEVEL=0 |
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| 422 | # |
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| 423 | fi |
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| 424 | |
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| 425 | ######################################################################## |
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| 426 | # |
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| 427 | # DEFINE LOOP PARAMETERS |
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| 428 | # |
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| 429 | ######################################################################## |
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| 430 | |
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| 431 | DATE_COUNT=${DATE_FIN_JOB_B} |
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| 432 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
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| 433 | |
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| 434 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
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| 435 | |
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| 436 | if [ ${DoJob} = true ] ; then |
---|
| 437 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 438 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
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| 439 | Length=$( create_ts_next_date ${config_UserChoices_PeriodLength} ${DATE_COUNT} ) |
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| 440 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
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| 441 | done |
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| 442 | else |
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| 443 | NBRE_FILE_TOT=0 |
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| 444 | fi |
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| 445 | |
---|
| 446 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
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| 447 | NBRE_TOUR=1 |
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| 448 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
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| 449 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
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| 450 | else |
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| 451 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
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| 452 | fi |
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| 453 | |
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| 454 | CURRENT_LOOP=1 |
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| 455 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
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| 456 | # WE HAVE 3 LEVELS |
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| 457 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
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| 458 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
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| 459 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
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| 460 | |
---|
| 461 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
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| 462 | |
---|
| 463 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
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| 464 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
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| 465 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
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| 466 | |
---|
| 467 | if [ ${FIRST_PASS} = TRUE ] ; then |
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| 468 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
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| 469 | else |
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| 470 | Length=$( create_ts_next_date ${config_UserChoices_PeriodLength} ${DATE_FIN_JOB_B_LOOP} ) |
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| 471 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
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| 472 | fi |
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| 473 | |
---|
| 474 | DATE_FIN=${PeriodDateEnd} |
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| 475 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
| 476 | |
---|
| 477 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 478 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
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| 479 | |
---|
| 480 | LEVEL=1 |
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| 481 | DEPOT="TRUE" |
---|
| 482 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 483 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 484 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 485 | |
---|
| 486 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
| 487 | Length=$( create_ts_next_date ${config_UserChoices_PeriodLength} ${DATE_FIN_JOB_B_LOOP} ) |
---|
| 488 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 489 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 490 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
| 491 | else |
---|
| 492 | Length=$( create_ts_next_date ${config_UserChoices_PeriodLength} ${DATE_FIN} ) |
---|
| 493 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 494 | fi |
---|
| 495 | |
---|
| 496 | (( TotLength = 0 )) |
---|
| 497 | COMPTEUR=1 |
---|
| 498 | DATE_LOOP=${DATE_COURANTE} |
---|
| 499 | |
---|
| 500 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 501 | # |
---|
| 502 | Length=$( create_ts_next_date ${config_UserChoices_PeriodLength} ${DATE_LOOP} ) |
---|
| 503 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 504 | (( TotLength = TotLength + Length )) |
---|
| 505 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 506 | # |
---|
| 507 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 508 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
| 509 | |
---|
| 510 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 511 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 512 | DEPOT="FALSE" |
---|
| 513 | LEVEL=2 |
---|
| 514 | else |
---|
| 515 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 516 | NBRE_FILE_LOOP=$( expr ${NBRE_FILE_TOT} % $(( UNIX_MAX_LIMIT * $(( CURRENT_LOOP - 1 )) )) ) |
---|
| 517 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 518 | |
---|
| 519 | Length=$( create_ts_next_date ${config_UserChoices_PeriodLength} ${DATE_FIN} ) |
---|
| 520 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 521 | DATE_FIN=${PeriodDateEnd} |
---|
| 522 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 523 | |
---|
| 524 | LEVEL=3 |
---|
| 525 | DEPOT="TRUE" |
---|
| 526 | FLAG_B="TRUE" |
---|
| 527 | fi |
---|
| 528 | |
---|
| 529 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 530 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 531 | # |
---|
| 532 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 533 | # |
---|
| 534 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 535 | # |
---|
| 536 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 537 | # |
---|
| 538 | i=0 |
---|
| 539 | # |
---|
| 540 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 541 | # |
---|
| 542 | # Determine in which output can we find file |
---|
| 543 | # IE : Output/MO or Output/DA or ... |
---|
| 544 | # |
---|
| 545 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 546 | case ${FlagDir} in |
---|
| 547 | 1Y) TS_Dir=TS_YE ; FreqDir=AN ;; |
---|
| 548 | 1M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
| 549 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 550 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 551 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 552 | *) |
---|
| 553 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
| 554 | IGCM_sys_Exit "Job create_ts" ;; |
---|
| 555 | esac |
---|
| 556 | |
---|
| 557 | # Initialize array |
---|
| 558 | set -A liste_file |
---|
| 559 | set -A liste_file_tmp |
---|
| 560 | |
---|
| 561 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
| 562 | |
---|
| 563 | COMPTEUR=1 |
---|
| 564 | DATE_LOOP=${DATE_COURANTE} |
---|
| 565 | |
---|
| 566 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 567 | # |
---|
| 568 | Length1=$( create_ts_begin_date ${config_UserChoices_PeriodLength} ${DATE_LOOP} ) |
---|
| 569 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
| 570 | |
---|
| 571 | Length2=$( create_ts_next_date ${config_UserChoices_PeriodLength} ${DATE_LOOP} ) |
---|
| 572 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
| 573 | |
---|
| 574 | set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 575 | set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 576 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 577 | # |
---|
| 578 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 579 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
| 580 | |
---|
| 581 | # Get selected files |
---|
| 582 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
| 583 | eval ExitFlag=false |
---|
| 584 | IGCM_debug_Verif_Exit_Post |
---|
| 585 | |
---|
| 586 | # Apply IGCM_Patch if needed |
---|
| 587 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 588 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
| 589 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 590 | IGCM_${Patch} ${file_t} |
---|
| 591 | done |
---|
| 592 | done |
---|
| 593 | fi |
---|
| 594 | |
---|
| 595 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
| 596 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
| 597 | Length=$( create_ts_begin_date ${config_UserChoices_PeriodLength} ${DATE_COURANTE} ) |
---|
| 598 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
| 599 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
| 600 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
| 601 | |
---|
| 602 | liste_coord=" " |
---|
| 603 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
| 604 | liste_coord=${liste_coord}${axis}"," |
---|
| 605 | done |
---|
| 606 | |
---|
| 607 | # Time axis must be the last dimension |
---|
| 608 | time_axis=${axis} |
---|
| 609 | |
---|
| 610 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 611 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 612 | # |
---|
| 613 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 614 | # |
---|
| 615 | # # Change time axis name to be CF compliant |
---|
| 616 | # if [ ${time_axis} != time_counter ]; then |
---|
| 617 | # IGCM_sys_ncrename -O -v ${time_axis},time_counter ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 618 | # fi |
---|
| 619 | # |
---|
| 620 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 621 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 622 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 623 | file2=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 624 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
| 625 | IGCM_sys_ncrcat --hst ${file1} ${file2} ${file_out} |
---|
| 626 | # |
---|
| 627 | IGCM_sys_Rm ${file1} ${file2} |
---|
| 628 | fi |
---|
| 629 | # |
---|
| 630 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
| 631 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 632 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 633 | #${ncatted} -a modulo,time_counter,c,c," " ${file_out} |
---|
| 634 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
| 635 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 636 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
| 637 | IGCM_sys_Rm ${file_out} |
---|
| 638 | # |
---|
| 639 | fi |
---|
| 640 | # |
---|
| 641 | eval ExitFlag=false |
---|
| 642 | IGCM_debug_Verif_Exit_Post |
---|
| 643 | done # for var in ${liste_var} ; do |
---|
| 644 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
| 645 | done # for file in ${liste_file_brut} do |
---|
| 646 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
| 647 | eval ExitFlag=false |
---|
| 648 | IGCM_debug_Verif_Exit_Post |
---|
| 649 | # GO AHEAD IN DEEPEST LOOP |
---|
| 650 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
| 651 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
| 652 | # FINISH |
---|
| 653 | |
---|
| 654 | # DODS copy |
---|
| 655 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 656 | for TS_Dir in $( ls ${R_SAVE}/${comp}/Analyse/ 2>&1 | grep TS_ ) ; do |
---|
| 657 | [ -d ${R_SAVE}/${comp}/Analyse/${TS_Dir} ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
| 658 | done |
---|
| 659 | done |
---|
| 660 | |
---|
| 661 | # clean environment variables and export usefull one : |
---|
| 662 | if [ X$( hostname -s ) = Xrhodes ] ; then |
---|
| 663 | LISTE_ENV=$( env | grep -iv MYLANG | grep -iv HOST | grep -iv LOGIN | grep -iv config_ | grep -iv R_ | grep -iv libIGCM | grep -iv PERIOD \ |
---|
| 664 | | grep -iv DMFDIR | grep -iv AN_| grep -iv YEARS | grep -iv ex | grep -iv RESOL_ | grep -iv PATH | grep -iv WORKDIR | grep -iv USER \ |
---|
| 665 | | grep -iv LOGNAME | grep -iv PROFILE | grep -iv ENV | grep -iv TMPDIR | grep -iv POST_DIR | grep -iv StandAlone | grep -iv DB | awk -F= '{print $1}' ) |
---|
| 666 | |
---|
| 667 | for variables in ${LISTE_ENV} ; do |
---|
| 668 | unset ${variables} |
---|
| 669 | done |
---|
| 670 | fi |
---|
| 671 | |
---|
| 672 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
| 673 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_SRF |
---|
| 674 | |
---|
| 675 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_SRF" |
---|
| 676 | export listVarEnv |
---|
| 677 | |
---|
| 678 | #D- |
---|
| 679 | # -------------------------------------------------------------------- |
---|
| 680 | #D- Test if all was right |
---|
| 681 | # -------------------------------------------------------------------- |
---|
| 682 | IGCM_debug_Verif_Exit_Post |
---|
| 683 | # -------------------------------------------------------------------- |
---|
| 684 | #D- Submit MONITORING |
---|
| 685 | # -------------------------------------------------------------------- |
---|
| 686 | IGCM_sys_QsubPost monitoring |
---|
| 687 | |
---|
| 688 | #D- |
---|
| 689 | # -------------------------------------------------------------------- |
---|
| 690 | #D- Update the run.card |
---|
| 691 | # -------------------------------------------------------------------- |
---|
| 692 | if [ ${StandAlone} != true ] ; then |
---|
| 693 | # Put in run.card end period of time series |
---|
| 694 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
| 695 | # We have finish the job ! |
---|
| 696 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
| 697 | fi |
---|
| 698 | date |
---|