[370] | 1 | #-Q- cesium #!/bin/ksh |
---|
| 2 | #-Q- cesium ###################### |
---|
| 3 | #-Q- cesium ## CESIUM CEA ## |
---|
| 4 | #-Q- cesium ###################### |
---|
| 5 | #-Q- cesium #MSUB -r MULTISE # Nom du job |
---|
| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
---|
| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
---|
| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
---|
| 9 | #-Q- cesium #MSUB -E "-j o" |
---|
| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
---|
| 11 | #-Q- platine #!/usr/bin/ksh |
---|
| 12 | #-Q- platine ################### |
---|
| 13 | #-Q- platine ## PLATINE CEA ## |
---|
| 14 | #-Q- platine ################### |
---|
| 15 | #-Q- platine #BSUB -J MULTISE # Nom du job |
---|
| 16 | #-Q- platine #BSUB -N # message a la fin du job |
---|
| 17 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
---|
| 18 | #-Q- platine #BSUB -W 1:00 # Limite temps |
---|
| 19 | #-Q- platine #BSUB -q post # Passage en queue post |
---|
| 20 | #-Q- sx8brodie #!/bin/ksh |
---|
| 21 | #-Q- sx8brodie ####################### |
---|
| 22 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
---|
| 23 | #-Q- sx8brodie ####################### |
---|
| 24 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
---|
| 25 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
---|
| 26 | #-Q- sx8brodie # Nom du travail LoadLeveler |
---|
| 27 | #-Q- sx8brodie # @ job_name = MULTISE |
---|
| 28 | #-Q- sx8brodie # Fichier de sortie standard du travail |
---|
| 29 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
---|
| 30 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
---|
| 31 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
---|
| 32 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 33 | #-Q- sx8brodie # @ notification = error |
---|
| 34 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
| 35 | #-Q- sx8brodie # @ queue |
---|
| 36 | #-Q- aix6 #!/bin/ksh |
---|
| 37 | #-Q- aix6 ####################### |
---|
| 38 | #-Q- aix6 ## VARGAS IDRIS ## |
---|
| 39 | #-Q- aix6 ####################### |
---|
| 40 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
---|
| 41 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
---|
| 42 | #-Q- aix6 # Nom du travail LoadLeveler |
---|
| 43 | #-Q- aix6 # @ job_name = MULTISE |
---|
| 44 | #-Q- aix6 # Fichier de sortie standard du travail |
---|
| 45 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
---|
| 46 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
---|
| 47 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
---|
| 48 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 49 | #-Q- aix6 # @ notification = error |
---|
| 50 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
| 51 | #-Q- aix6 # @ queue |
---|
[386] | 52 | #-Q- ulam #!/bin/ksh |
---|
| 53 | #-Q- ulam ####################### |
---|
| 54 | #-Q- ulam ## ULAM IDRIS ## |
---|
| 55 | #-Q- ulam ####################### |
---|
| 56 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
---|
| 57 | #-Q- ulam # @ wall_clock_limit = 20:00:00 |
---|
| 58 | #-Q- ulam # Nom du travail LoadLeveler |
---|
| 59 | #-Q- ulam # @ job_name = MULTISE |
---|
| 60 | #-Q- ulam # Fichier de sortie standard du travail |
---|
| 61 | #-Q- ulam # @ output = $(job_name).$(jobid) |
---|
| 62 | #-Q- ulam # Fichier de sortie d'erreur du travail |
---|
| 63 | #-Q- ulam # @ error = $(job_name).$(jobid) |
---|
| 64 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 65 | #-Q- ulam # @ notification = error |
---|
| 66 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
| 67 | #-Q- ulam # @ queue |
---|
[370] | 68 | #-Q- sx8mercure #!/bin/ksh |
---|
| 69 | #-Q- sx8mercure ###################### |
---|
| 70 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
---|
| 71 | #-Q- sx8mercure ###################### |
---|
| 72 | #-Q- sx8mercure #PBS -N MULTISE # Nom du job |
---|
| 73 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
---|
| 74 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
---|
| 75 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
---|
| 76 | #-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 1 heures |
---|
| 77 | #-Q- sx8mercure #PBS -q scalaire |
---|
| 78 | #-Q- sx9mercure #!/bin/ksh |
---|
| 79 | #-Q- sx9mercure ######################### |
---|
| 80 | #-Q- sx9mercure ## CESIUM FOR SX9 CEA ## |
---|
| 81 | #-Q- sx9mercure ######################### |
---|
| 82 | #-Q- sx9mercure #MSUB -r MULTISE # Nom du job |
---|
| 83 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
---|
| 84 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
---|
| 85 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
---|
| 86 | #-Q- sx9mercure #MSUB -E "-j o" |
---|
| 87 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
---|
| 88 | #-Q- titane #!/bin/ksh |
---|
| 89 | #-Q- titane ###################### |
---|
| 90 | #-Q- titane ## TITANE CEA ## |
---|
| 91 | #-Q- titane ###################### |
---|
| 92 | #-Q- titane #MSUB -r MULTISE # Nom du job |
---|
| 93 | #-Q- titane #MSUB -N 1 # Reservation du noeud |
---|
| 94 | #-Q- titane #MSUB -n 1 # Reservation du processus |
---|
| 95 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
---|
| 96 | #-Q- titane #MSUB -E "-j o" |
---|
| 97 | #-Q- titane #MSUB -E "-S /bin/ksh" |
---|
| 98 | #-Q- titane ##MSUB -e nco.out # Sortie standard |
---|
| 99 | #-Q- titane ##MSUB -o nco.out # Sortie standard |
---|
| 100 | #-Q- lxiv8 ###################### |
---|
| 101 | #-Q- lxiv8 ## OBELIX LSCE ## |
---|
| 102 | #-Q- lxiv8 ###################### |
---|
| 103 | #-Q- lxiv8 #PBS -N MULTISE |
---|
| 104 | #-Q- lxiv8 #PBS -m a |
---|
| 105 | #-Q- lxiv8 #PBS -j oe |
---|
| 106 | #-Q- lxiv8 #PBS -q medium |
---|
| 107 | #-Q- lxiv8 #PBS -o SE.$$ |
---|
| 108 | #-Q- lxiv8 #PBS -S /bin/ksh |
---|
| 109 | #-Q- default #!/bin/ksh |
---|
| 110 | #-Q- default ################## |
---|
| 111 | #-Q- default ## DEFAULT HOST ## |
---|
| 112 | #-Q- default ################## |
---|
| 113 | |
---|
[373] | 114 | #************************************************************** |
---|
| 115 | # Author: Marie-Alice Foujols |
---|
| 116 | # Contact: Marie-Alice.Foujols__at__ipsl.jussieu.fr |
---|
| 117 | # $Revision:: $ Revision of last commit |
---|
| 118 | # $Author:: $ Author of last commit |
---|
| 119 | # $Date:: $ Date of last commit |
---|
[370] | 120 | # IPSL (2006) |
---|
| 121 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
[373] | 122 | # |
---|
| 123 | #************************************************************** |
---|
[370] | 124 | |
---|
| 125 | #set -eu |
---|
| 126 | #set -vx |
---|
| 127 | |
---|
| 128 | date |
---|
| 129 | |
---|
| 130 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
---|
| 131 | #-Q- aix6 export OMP_NUM_THREADS=1 |
---|
[386] | 132 | #-Q- ulam export OMP_NUM_THREADS=1 |
---|
[370] | 133 | |
---|
| 134 | ######################################################################## |
---|
| 135 | |
---|
| 136 | #D- Flag to determine if this job in a standalone mode |
---|
| 137 | #D- Default : value from AA_job if any |
---|
| 138 | StandAlone=${StandAlone:=true} |
---|
| 139 | |
---|
| 140 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
| 141 | #D- Default : value from AA_job if any |
---|
| 142 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
---|
| 143 | # WARNING for StandAlone used : To run this script on some machine, |
---|
| 144 | # you must check MirrorlibIGCM variable in sys library. |
---|
| 145 | # If this variable is true, you must use libIGCM_POST path instead |
---|
| 146 | # of your running libIGCM directory. |
---|
| 147 | |
---|
| 148 | #D- Flag to determine atlas job's output directory |
---|
| 149 | #D- Default : value from libIGCM_post.ksh if any |
---|
| 150 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
---|
| 151 | |
---|
| 152 | #D- Increased verbosity (1, 2, 3) |
---|
| 153 | #D- Default : value from AA_job if any |
---|
| 154 | Verbosity=${Verbosity:=3} |
---|
| 155 | |
---|
| 156 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
| 157 | #D- Default : value from AA_job if any |
---|
| 158 | DEBUG_debug=${DEBUG_debug:=false} |
---|
| 159 | |
---|
| 160 | #D- TEMPORARY Flag to determine atmospheric resolution |
---|
| 161 | #D- Default : value from atmospheric driver if any |
---|
| 162 | RESOL_ATM=${RESOL_ATM:=ALL} |
---|
| 163 | |
---|
| 164 | #D- Flag to determine surface resolution |
---|
| 165 | #D- Default : value from surface driver if any |
---|
| 166 | RESOL_SRF=ALL |
---|
| 167 | |
---|
| 168 | #D- Flag to determine surface resolution |
---|
| 169 | #D- Default : value from surface driver if any |
---|
| 170 | RESOL_SBG=ALL |
---|
| 171 | |
---|
| 172 | #D- TEMPORARY Flag to determine ocean resolution |
---|
| 173 | #D- Default : value from ocean driver if any |
---|
| 174 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
---|
| 175 | |
---|
| 176 | #D- TEMPORARY Flag to determine ice resolution |
---|
| 177 | #D- Default : value from ice driver if any |
---|
| 178 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
---|
| 179 | |
---|
| 180 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
---|
| 181 | #D- Default : value from ice driver if any |
---|
| 182 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
---|
| 183 | |
---|
| 184 | ######################################################################## |
---|
| 185 | |
---|
| 186 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 187 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
| 188 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 189 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
| 190 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 191 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
| 192 | #------- |
---|
| 193 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
| 194 | |
---|
| 195 | ######################################################################## |
---|
| 196 | |
---|
| 197 | #set -vx |
---|
| 198 | |
---|
| 199 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
| 200 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 201 | |
---|
| 202 | if [ ${StandAlone} = true ] ; then |
---|
| 203 | CARD_DIR=${SUBMIT_DIR} |
---|
| 204 | else |
---|
| 205 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
---|
| 206 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
---|
| 207 | fi |
---|
| 208 | |
---|
| 209 | # |
---|
| 210 | # First of all |
---|
| 211 | # |
---|
| 212 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
---|
| 213 | typeset option |
---|
| 214 | for option in ${config_UserChoices[*]} ; do |
---|
| 215 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
---|
| 216 | done |
---|
| 217 | # |
---|
| 218 | echo |
---|
| 219 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
---|
| 220 | IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName |
---|
| 221 | IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName |
---|
| 222 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
---|
| 223 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
---|
| 224 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
---|
| 225 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
---|
| 226 | echo |
---|
| 227 | |
---|
| 228 | #================================== |
---|
| 229 | #R_SAVE : Job output directory |
---|
| 230 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
---|
| 231 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
---|
| 232 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
---|
| 233 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
---|
| 234 | else |
---|
| 235 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
---|
| 236 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
---|
| 237 | fi |
---|
| 238 | # |
---|
| 239 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
---|
| 240 | |
---|
| 241 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Post |
---|
| 242 | |
---|
| 243 | # |
---|
| 244 | # If option MultiSeasonalFrequency is not found (optionnal) put MultiSeasonalFrequency=50Y |
---|
| 245 | # |
---|
| 246 | FoundMultiSeasonal=false |
---|
| 247 | for option in ${config_Post[*]} ; do |
---|
| 248 | if [ ${option} = MultiSeasonalFrequency ] ; then |
---|
| 249 | FoundMultiSeasonal=true |
---|
| 250 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post MultiSeasonalFrequency |
---|
| 251 | fi |
---|
| 252 | done |
---|
| 253 | if [ ! X${FoundMultiSeasonal} = Xtrue ] ; then |
---|
| 254 | config_Post_MultiSeasonalFrequency=50Y |
---|
| 255 | fi |
---|
| 256 | # |
---|
| 257 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
---|
| 258 | # |
---|
| 259 | # Determine period for seasonnal average. Default : value from AA_job if any |
---|
| 260 | # |
---|
| 261 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
---|
| 262 | # |
---|
| 263 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
---|
| 264 | # |
---|
| 265 | IGCM_debug_Print 1 "DefineVariableFromOption : Post " |
---|
| 266 | IGCM_debug_PrintVariables 3 config_Post_SeasonalFrequency |
---|
| 267 | IGCM_debug_PrintVariables 3 config_Post_MultiSeasonalFrequency |
---|
| 268 | echo |
---|
| 269 | |
---|
| 270 | # |
---|
| 271 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
---|
| 272 | # |
---|
| 273 | multifreq=$( echo ${config_Post_MultiSeasonalFrequency} | sed -e "s/[yY]//" ) |
---|
| 274 | # |
---|
| 275 | DIR_OUT=SE_${multifreq}Y |
---|
| 276 | # |
---|
| 277 | an_multi_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 )) |
---|
| 278 | an_multi_deb=$( IGCM_date_YearDigit $(( an_multi_fin - multifreq + 1 )) ) |
---|
| 279 | an_multi_fin=$( IGCM_date_YearDigit ${an_multi_fin} ) |
---|
| 280 | # |
---|
| 281 | # For each component selected determine which files need post-processing |
---|
| 282 | # |
---|
| 283 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 284 | # |
---|
| 285 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
---|
| 286 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 287 | # |
---|
| 288 | card=${CARD_DIR}/COMP/${compname}.card |
---|
| 289 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 290 | # |
---|
| 291 | ListFilesName=${compname}_OutputFiles_List |
---|
| 292 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 293 | # |
---|
| 294 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 295 | # |
---|
| 296 | # INITIALISATION |
---|
| 297 | # |
---|
| 298 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 299 | typeset i=2 |
---|
| 300 | # |
---|
| 301 | until [ $i -gt $NbFiles ]; do |
---|
| 302 | # |
---|
| 303 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 304 | # |
---|
| 305 | if [ X${flag_post} != XNONE ] ; then |
---|
| 306 | # |
---|
| 307 | # Check if seasonal is required for this file |
---|
| 308 | # |
---|
| 309 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
---|
| 310 | # |
---|
| 311 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
---|
| 312 | # |
---|
| 313 | # variable option allready typeset above |
---|
| 314 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
---|
| 315 | if [ ${option} = Seasonal ] ; then |
---|
| 316 | FoundSeasonal=true |
---|
| 317 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
---|
| 318 | fi |
---|
| 319 | done |
---|
| 320 | # |
---|
| 321 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
---|
| 322 | eval ${compname}_${flag_post}_Seasonal=ON |
---|
| 323 | fi |
---|
| 324 | # |
---|
| 325 | if [ ! X$( eval echo \${${compname}_${flag_post}_Seasonal} ) = XON ] ; then |
---|
| 326 | (( i=i+3 )) |
---|
| 327 | continue |
---|
| 328 | fi |
---|
| 329 | # |
---|
| 330 | # CREATE LIST |
---|
| 331 | # |
---|
| 332 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
---|
| 333 | # |
---|
| 334 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
---|
| 335 | # |
---|
| 336 | MULTI_DIRECTORY=${R_SAVE}/${comp}/Analyse/${DIR_OUT} |
---|
| 337 | # |
---|
| 338 | TestedFile=${config_UserChoices_JobName}_SE_${an_multi_deb}_${an_multi_fin}_${FILE}.nc |
---|
| 339 | # |
---|
| 340 | IGCM_sys_TestFileArchive ${MULTI_DIRECTORY}/${TestedFile} |
---|
| 341 | if [ ! $? = 0 ] ; then |
---|
| 342 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
---|
| 343 | fi |
---|
| 344 | fi |
---|
| 345 | (( i=i+3 )) |
---|
| 346 | done # until [ $i -eq $NbFiles ] |
---|
| 347 | fi |
---|
| 348 | done # for comp |
---|
| 349 | |
---|
| 350 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 351 | # |
---|
| 352 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 353 | # |
---|
| 354 | i=0 |
---|
| 355 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 356 | # |
---|
| 357 | RESULT_MULTI_SE=${config_UserChoices_JobName}_SE_${an_multi_deb}_${an_multi_fin}_${file}.nc |
---|
| 358 | # Do not redo an existing SE |
---|
| 359 | IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/${DIR_OUT}/${RESULT_MULTI_SE} |
---|
| 360 | if [ $? = 0 ] ; then |
---|
| 361 | continue |
---|
| 362 | fi |
---|
| 363 | # |
---|
| 364 | eval file_path=\${R_OUT_${comp}}/Analyse/SE/ |
---|
| 365 | # |
---|
| 366 | (( an = an_multi_deb )) |
---|
| 367 | # Initialize array |
---|
| 368 | #set -A liste_file_se |
---|
| 369 | #set -A liste_file_se_tmp |
---|
| 370 | unset liste_file_se |
---|
| 371 | unset liste_file_se_tmp |
---|
| 372 | while [ ${an} -le ${an_multi_fin} ] ; do |
---|
| 373 | # |
---|
| 374 | an_deb=$(printf "%04i\n" ${an} ) |
---|
| 375 | # |
---|
| 376 | (( an_fin = an_deb + freq - 1 )) |
---|
| 377 | date=${an_deb}_${an_fin} |
---|
| 378 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
---|
| 379 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
---|
| 380 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_SE_${date}_${file}.nc |
---|
| 381 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_SE_${date}_${file}.nc |
---|
| 382 | (( an = an + freq )) |
---|
| 383 | done |
---|
| 384 | # |
---|
| 385 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
---|
| 386 | eval ExitFlag=false |
---|
| 387 | IGCM_debug_Verif_Exit_Post |
---|
| 388 | # Search of common list of variables to be treated |
---|
| 389 | nbfile=0 |
---|
| 390 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
---|
| 391 | ncks -m ${file_common_var} | grep '# dim. =' | cut -d ':' -f 1 >> tmpfile_ncra |
---|
| 392 | (( nbfile = nbfile + 1 )) |
---|
| 393 | done |
---|
| 394 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 395 | IGCM_sys_Rm tmpfile_ncra |
---|
| 396 | |
---|
| 397 | # detect time counter : time or time_counter ie unlimited variable |
---|
| 398 | var_unlim=$(ncdump -h ${liste_file_se_tmp[1]}|grep UNLIMITED| cut -d ' ' -f 1) |
---|
| 399 | |
---|
| 400 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
---|
| 401 | # |
---|
| 402 | (( nb = ${mois} - 1 )) |
---|
| 403 | # |
---|
| 404 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
---|
| 405 | IGCM_sys_ncra -O -v ${list_var_final_ncra} -d ${var_unlim},${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
---|
| 406 | done |
---|
| 407 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
---|
| 408 | eval ExitFlag=false |
---|
| 409 | IGCM_debug_Verif_Exit_Post |
---|
| 410 | # |
---|
| 411 | |
---|
| 412 | # Search of common list of variables to be treated |
---|
| 413 | nbfile=0 |
---|
| 414 | for file_common_var in ${OUT_SE[*]} ; do |
---|
| 415 | ncks -m ${file_common_var} | grep '# dim. =' | cut -d ':' -f 1 >> tmpfile_ncrcat |
---|
| 416 | (( nbfile = nbfile + 1 )) |
---|
| 417 | done |
---|
| 418 | list_var_final_ncrcat=`cat tmpfile_ncrcat | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 419 | IGCM_sys_Rm tmpfile_ncrcat |
---|
| 420 | |
---|
| 421 | IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_MULTI_SE} |
---|
| 422 | # |
---|
| 423 | IGCM_sys_Rm ${OUT_SE[*]} |
---|
[377] | 424 | |
---|
| 425 | # Put correct climatological axis following calendar |
---|
[379] | 426 | case ${config_UserChoices_CalendarType} in |
---|
| 427 | 360d) |
---|
| 428 | # 360 days |
---|
| 429 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15, 45, 75, 105, 135, 165, 195, 225, 255, 285, 315, 345.} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 30, 30, 60, 60, 90, 90, 120, 120, 150, 150, 180, 180, 210, 210, 240, 240, 270, 270, 300, 300, 330, 330, 360.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN 0000 00:00:00\" ; ${var_unlim}@calendar=\"360_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 430 | ;; |
---|
| 431 | noleap) |
---|
| 432 | # 365 days |
---|
| 433 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45, 74.5, 105, 135.5, 166, 196.5, 227.5, 258, 288.5, 319, 349.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59, 59, 90, 90, 120, 120, 151, 151, 181, 181, 212, 212, 243, 243, 273, 273, 304, 304, 334, 334, 365.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN 0000 00:00:00\" ; ${var_unlim}@calendar=\"noleap\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 434 | ;; |
---|
| 435 | all_leap) |
---|
| 436 | # 366 days |
---|
| 437 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.5, 75.5, 106, 136.5, 167, 197.5, 228.5, 259, 289.5, 320, 350.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 60, 60, 91, 91, 121, 121, 152, 152, 182, 182, 213, 213, 244, 244, 274, 274, 305, 305, 335, 335, 366.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN 0000 00:00:00\" ; ${var_unlim}@calendar=\"all_leap\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 438 | ;; |
---|
| 439 | leap|gregorian) |
---|
| 440 | # 365.2425 days |
---|
| 441 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.12125, 74.7425, 105.2425, 135.7425, 166.2425, 196.7425, 227.7425, 258.2425, 288.7425, 319.2425, 349.7425} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59.2425, 59.2425, 90.2425, 90.2425, 120.2425, 120.2425, 151.2425, 151.2425, 181.2425, 181.2425, 212.2425, 212.2425, 243.2425, 243.2425, 273.2425, 273.2425, 304.2425, 304.2425, 334.2425, 334.2425, 365.2425} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN 0000 00:00:00\" ; ${var_unlim}@calendar=\"gregorian\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 442 | ;; |
---|
| 443 | esac |
---|
| 444 | eval IGCM_sys_ncap2 -Oh -s $ncap2cmd ${RESULT_MULTI_SE} tmp.nc |
---|
| 445 | IGCM_sys_Rm ${RESULT_MULTI_SE} |
---|
| 446 | IGCM_sys_Mv tmp.nc ${RESULT_MULTI_SE} |
---|
[370] | 447 | # |
---|
| 448 | eval IGCM_sys_Put_Out ${RESULT_MULTI_SE} \${R_OUT_${comp}}/Analyse/${DIR_OUT}/${RESULT_MULTI_SE} |
---|
| 449 | IGCM_sys_Rm ${RESULT_MULTI_SE} |
---|
| 450 | # |
---|
| 451 | eval ExitFlag=false |
---|
| 452 | IGCM_debug_Verif_Exit_Post |
---|
| 453 | done |
---|
| 454 | done |
---|
| 455 | |
---|
| 456 | # DODS copy |
---|
| 457 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 458 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${DIR_OUT} |
---|
| 459 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${DIR_OUT} |
---|
| 460 | done |
---|
| 461 | |
---|
| 462 | YEARS=${an_multi_deb}_${an_multi_fin} |
---|
| 463 | |
---|
| 464 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
| 465 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
| 466 | export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS; export DIR_OUT |
---|
| 467 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS,DIR_OUT" |
---|
| 468 | export listVarEnv; |
---|
| 469 | |
---|
| 470 | #D- |
---|
| 471 | # -------------------------------------------------------------------- |
---|
| 472 | #D- Test if all was right before ATLAS |
---|
| 473 | # -------------------------------------------------------------------- |
---|
| 474 | IGCM_debug_Verif_Exit_Post |
---|
| 475 | |
---|
| 476 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
---|
| 477 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
---|
| 478 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
---|
| 479 | # |
---|
[387] | 480 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 481 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 482 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
| 483 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 484 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 485 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 486 | Script_Post_Output=additionnal.${PeriodDateEnd} ; |
---|
| 487 | IGCM_sys_QsubPost additionnal ; |
---|
[370] | 488 | # |
---|
| 489 | elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] || \ |
---|
| 490 | [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || \ |
---|
| 491 | [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] ; then |
---|
[387] | 492 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 493 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 494 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
| 495 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 496 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 497 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 498 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 499 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
[370] | 500 | # |
---|
| 501 | elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
---|
| 502 | [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
---|
| 503 | [ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then |
---|
| 504 | # |
---|
[387] | 505 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
| 506 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 507 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 508 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
[370] | 509 | # |
---|
| 510 | elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then |
---|
| 511 | # |
---|
[387] | 512 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
| 513 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
[370] | 514 | # |
---|
| 515 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
---|
| 516 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
---|
| 517 | # |
---|
[387] | 518 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 519 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
[370] | 520 | # |
---|
| 521 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] || |
---|
| 522 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] ; then |
---|
| 523 | # |
---|
[387] | 524 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 525 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
[370] | 526 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ; then |
---|
| 527 | # |
---|
[387] | 528 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 529 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 530 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 531 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
[370] | 532 | elif [ ${config_UserChoices_TagName} = "ORCA2_OFF_PISCES" ] ; then |
---|
| 533 | # |
---|
[387] | 534 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 535 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
[370] | 536 | # |
---|
| 537 | fi |
---|
| 538 | |
---|
| 539 | # Clean RUN_DIR_PATH (necessary for cesium) |
---|
| 540 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|