[622] | 1 | #-Q- curie ###################### |
---|
| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
---|
| 3 | #-Q- curie ###################### |
---|
[785] | 4 | #-Q- curie #MSUB -r MULTISE # Nom du job |
---|
[1468] | 5 | #-Q- curie #MSUB -o MULTISE.out_%I |
---|
| 6 | #-Q- curie #MSUB -e MULTISE.out_%I |
---|
[622] | 7 | #-Q- curie #MSUB -n 1 # Reservation du processus |
---|
[880] | 8 | #-Q- curie #MSUB -T 36000 # Limite de temps elapsed du job |
---|
[1154] | 9 | #-Q- curie #MSUB -q ::default_node:: |
---|
[1274] | 10 | #-Q- curie #MSUB -c ::default_core:: |
---|
[704] | 11 | #-Q- curie #MSUB -Q normal |
---|
[837] | 12 | #-Q- curie #MSUB -A ::default_project:: |
---|
[681] | 13 | #-Q- curie set +x |
---|
[1437] | 14 | #-Q- irene ###################### |
---|
| 15 | #-Q- irene ## IRENE TGCC/CEA ## |
---|
| 16 | #-Q- irene ###################### |
---|
| 17 | #-Q- irene #MSUB -r MULTISE # Job name |
---|
[1468] | 18 | #-Q- irene #MSUB -o MULTISE.out_%I |
---|
| 19 | #-Q- irene #MSUB -e MULTISE.out_%I |
---|
[1437] | 20 | #-Q- irene #MSUB -n 1 |
---|
| 21 | #-Q- irene #MSUB -T 7200 # Maximum elapsed time |
---|
[1468] | 22 | #-Q- irene #MSUB -q ::default_node:: |
---|
| 23 | #-Q- irene #MSUB -c ::default_core:: |
---|
[1437] | 24 | #-Q- irene #MSUB -Q normal |
---|
[1468] | 25 | #-Q- irene #MSUB -A ::default_post_project:: |
---|
[1460] | 26 | #-Q- irene #MSUB -m store,work,scratch |
---|
[1437] | 27 | #-Q- irene set +x |
---|
[1525] | 28 | #-Q- irene-amd ###################### |
---|
| 29 | #-Q- irene-amd ## IRENE TGCC/CEA ## |
---|
| 30 | #-Q- irene-amd ###################### |
---|
| 31 | #-Q- irene-amd #MSUB -r MULTISE # Job name |
---|
| 32 | #-Q- irene-amd #MSUB -o MULTISE.out_%I |
---|
| 33 | #-Q- irene-amd #MSUB -e MULTISE.out_%I |
---|
| 34 | #-Q- irene-amd #MSUB -n 1 # Number of cores |
---|
| 35 | #-Q- irene-amd #MSUB -T 7200 # Maximum elapsed time |
---|
| 36 | #-Q- irene-amd #MSUB -q ::default_node:: |
---|
| 37 | #-Q- irene-amd #MSUB -c ::default_core:: |
---|
| 38 | #-Q- irene-amd #MSUB -Q normal |
---|
| 39 | #-Q- irene-amd #MSUB -A ::default_post_project:: |
---|
| 40 | #-Q- irene-amd #MSUB -m store,work,scratch |
---|
| 41 | #-Q- irene-amd set +x |
---|
[770] | 42 | #-Q- ada #!/bin/ksh |
---|
| 43 | #-Q- ada ####################### |
---|
[929] | 44 | #-Q- ada ## ADA IDRIS ## |
---|
[770] | 45 | #-Q- ada ####################### |
---|
[1409] | 46 | #-Q- ada # @ job_type = mpich |
---|
[848] | 47 | #-Q- ada # @ requirements = (Feature == "prepost") |
---|
[770] | 48 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
---|
| 49 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
---|
| 50 | #-Q- ada # Nom du travail LoadLeveler |
---|
| 51 | #-Q- ada # @ job_name = MULTISE |
---|
[785] | 52 | #-Q- ada # Fichier de sortie standard du travail |
---|
[770] | 53 | #-Q- ada # @ output = $(job_name).$(jobid) |
---|
| 54 | #-Q- ada # Fichier de sortie d'erreur du travail |
---|
| 55 | #-Q- ada # @ error = $(job_name).$(jobid) |
---|
| 56 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 57 | #-Q- ada # @ notification = error |
---|
[1201] | 58 | #-Q- ada # @ environment = $DEBUG_debug ; $BigBrother ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $POST_DIR ; $Script_Post_Output ; $MASTER ; $DateBegin ; $PeriodDateEnd ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; wall_clock_limit=$(wall_clock_limit) |
---|
[770] | 59 | #-Q- ada # @ queue |
---|
[1568] | 60 | #-Q- obelix ###################### |
---|
| 61 | #-Q- obelix ## OBELIX LSCE ## |
---|
| 62 | #-Q- obelix ###################### |
---|
| 63 | #-Q- obelix #PBS -N MULTISE |
---|
| 64 | #-Q- obelix #PBS -m a |
---|
| 65 | #-Q- obelix #PBS -j oe |
---|
| 66 | #-Q- obelix #PBS -q medium |
---|
| 67 | #-Q- obelix #PBS -o MULTISE.$$ |
---|
| 68 | #-Q- obelix #PBS -S /bin/ksh |
---|
[1184] | 69 | #-Q- ifort_CICLAD ###################### |
---|
| 70 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
---|
| 71 | #-Q- ifort_CICLAD ###################### |
---|
| 72 | #-Q- ifort_CICLAD #PBS -N MULTISE |
---|
| 73 | #-Q- ifort_CICLAD #PBS -m a |
---|
| 74 | #-Q- ifort_CICLAD #PBS -j oe |
---|
[1314] | 75 | #-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only |
---|
[1184] | 76 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
---|
[370] | 77 | #-Q- default #!/bin/ksh |
---|
| 78 | #-Q- default ################## |
---|
| 79 | #-Q- default ## DEFAULT HOST ## |
---|
| 80 | #-Q- default ################## |
---|
| 81 | |
---|
[373] | 82 | #************************************************************** |
---|
| 83 | # Author: Marie-Alice Foujols |
---|
| 84 | # Contact: Marie-Alice.Foujols__at__ipsl.jussieu.fr |
---|
| 85 | # $Revision:: $ Revision of last commit |
---|
| 86 | # $Author:: $ Author of last commit |
---|
| 87 | # $Date:: $ Date of last commit |
---|
[370] | 88 | # IPSL (2006) |
---|
| 89 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
[373] | 90 | # |
---|
| 91 | #************************************************************** |
---|
[1330] | 92 | # ID of your genci project. Curie only : post-processing jobs need it to run properly |
---|
| 93 | #-Q- curie export BRIDGE_MSUB_PROJECT=::default_project:: |
---|
[370] | 94 | |
---|
| 95 | #set -eu |
---|
| 96 | #set -vx |
---|
| 97 | |
---|
| 98 | date |
---|
| 99 | |
---|
[770] | 100 | #-Q- ada export OMP_NUM_THREADS=1 |
---|
[370] | 101 | |
---|
[1356] | 102 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
---|
[712] | 103 | TaskType=post-processing |
---|
| 104 | |
---|
[370] | 105 | ######################################################################## |
---|
| 106 | |
---|
| 107 | #D- Flag to determine if this job in a standalone mode |
---|
| 108 | #D- Default : value from AA_job if any |
---|
| 109 | StandAlone=${StandAlone:=true} |
---|
| 110 | |
---|
[554] | 111 | #D- Path to libIGCM |
---|
[370] | 112 | #D- Default : value from AA_job if any |
---|
| 113 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
---|
| 114 | |
---|
| 115 | #D- Flag to determine atlas job's output directory |
---|
| 116 | #D- Default : value from libIGCM_post.ksh if any |
---|
| 117 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
---|
| 118 | |
---|
| 119 | #D- Increased verbosity (1, 2, 3) |
---|
| 120 | #D- Default : value from AA_job if any |
---|
| 121 | Verbosity=${Verbosity:=3} |
---|
| 122 | |
---|
| 123 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
| 124 | #D- Default : value from AA_job if any |
---|
| 125 | DEBUG_debug=${DEBUG_debug:=false} |
---|
| 126 | |
---|
| 127 | #D- TEMPORARY Flag to determine atmospheric resolution |
---|
| 128 | #D- Default : value from atmospheric driver if any |
---|
| 129 | RESOL_ATM=${RESOL_ATM:=ALL} |
---|
| 130 | |
---|
| 131 | #D- Flag to determine surface resolution |
---|
| 132 | #D- Default : value from surface driver if any |
---|
| 133 | RESOL_SRF=ALL |
---|
| 134 | |
---|
| 135 | #D- Flag to determine surface resolution |
---|
| 136 | #D- Default : value from surface driver if any |
---|
| 137 | RESOL_SBG=ALL |
---|
| 138 | |
---|
| 139 | #D- TEMPORARY Flag to determine ocean resolution |
---|
| 140 | #D- Default : value from ocean driver if any |
---|
| 141 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
---|
| 142 | |
---|
| 143 | #D- TEMPORARY Flag to determine ice resolution |
---|
| 144 | #D- Default : value from ice driver if any |
---|
[1326] | 145 | RESOL_ICE=${RESOL_OCE:=ORCA2} |
---|
[370] | 146 | |
---|
| 147 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
---|
| 148 | #D- Default : value from ice driver if any |
---|
[1326] | 149 | RESOL_MBG=${RESOL_OCE:=ORCA2} |
---|
[370] | 150 | |
---|
| 151 | ######################################################################## |
---|
| 152 | |
---|
| 153 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 154 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 155 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 156 | #------- |
---|
| 157 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
[731] | 158 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
---|
[832] | 159 | #------- |
---|
[1192] | 160 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
| 161 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 162 | #------- |
---|
[832] | 163 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
| 164 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
| 165 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
[370] | 166 | |
---|
| 167 | ######################################################################## |
---|
| 168 | |
---|
| 169 | #set -vx |
---|
| 170 | |
---|
[436] | 171 | # ------------------------------------------------------------------ |
---|
| 172 | # Test if all was right before proceeding further |
---|
| 173 | # ------------------------------------------------------------------ |
---|
[1206] | 174 | IGCM_debug_Verif_Exit |
---|
[436] | 175 | |
---|
[370] | 176 | if [ ${StandAlone} = true ] ; then |
---|
[785] | 177 | CARD_DIR=${SUBMIT_DIR} |
---|
[370] | 178 | else |
---|
[785] | 179 | CARD_DIR=${RUN_DIR_PATH} |
---|
| 180 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
---|
| 181 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
---|
| 182 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
---|
| 183 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
---|
[370] | 184 | fi |
---|
| 185 | |
---|
[727] | 186 | #================================== |
---|
[370] | 187 | # First of all |
---|
| 188 | # |
---|
[727] | 189 | # Read libIGCM compatibility version in config.card |
---|
| 190 | # Read UserChoices section |
---|
| 191 | # Read Ensemble section |
---|
| 192 | # Read Post section |
---|
| 193 | # Define all netcdf output directories |
---|
| 194 | #================================== |
---|
| 195 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
---|
[658] | 196 | |
---|
[1198] | 197 | # ------------------------------------------------------------------ |
---|
| 198 | # Activate BigBrother so as to supervise this job |
---|
| 199 | # ------------------------------------------------------------------ |
---|
| 200 | IGCM_debug_BigBro_Initialize |
---|
| 201 | |
---|
[370] | 202 | #================================== |
---|
[727] | 203 | # Read ListOfComponents section: |
---|
[370] | 204 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
---|
| 205 | |
---|
[727] | 206 | #================================== |
---|
| 207 | # Read SeasonalFrequency: |
---|
[370] | 208 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Post |
---|
| 209 | |
---|
| 210 | # |
---|
| 211 | # If option MultiSeasonalFrequency is not found (optionnal) put MultiSeasonalFrequency=50Y |
---|
| 212 | # |
---|
| 213 | FoundMultiSeasonal=false |
---|
| 214 | for option in ${config_Post[*]} ; do |
---|
[785] | 215 | if [ ${option} = MultiSeasonalFrequency ] ; then |
---|
| 216 | FoundMultiSeasonal=true |
---|
| 217 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post MultiSeasonalFrequency |
---|
| 218 | fi |
---|
[370] | 219 | done |
---|
| 220 | if [ ! X${FoundMultiSeasonal} = Xtrue ] ; then |
---|
[785] | 221 | config_Post_MultiSeasonalFrequency=50Y |
---|
[370] | 222 | fi |
---|
| 223 | # |
---|
| 224 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
---|
| 225 | # |
---|
| 226 | # Determine period for seasonnal average. Default : value from AA_job if any |
---|
| 227 | # |
---|
| 228 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
---|
| 229 | # |
---|
| 230 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
---|
| 231 | # |
---|
| 232 | IGCM_debug_Print 1 "DefineVariableFromOption : Post " |
---|
| 233 | IGCM_debug_PrintVariables 3 config_Post_SeasonalFrequency |
---|
| 234 | IGCM_debug_PrintVariables 3 config_Post_MultiSeasonalFrequency |
---|
| 235 | echo |
---|
| 236 | |
---|
| 237 | # |
---|
| 238 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
---|
| 239 | # |
---|
| 240 | multifreq=$( echo ${config_Post_MultiSeasonalFrequency} | sed -e "s/[yY]//" ) |
---|
| 241 | # |
---|
| 242 | DIR_OUT=SE_${multifreq}Y |
---|
| 243 | # |
---|
| 244 | an_multi_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 )) |
---|
| 245 | an_multi_deb=$( IGCM_date_YearDigit $(( an_multi_fin - multifreq + 1 )) ) |
---|
| 246 | an_multi_fin=$( IGCM_date_YearDigit ${an_multi_fin} ) |
---|
| 247 | # |
---|
| 248 | # For each component selected determine which files need post-processing |
---|
| 249 | # |
---|
| 250 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 251 | # |
---|
| 252 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
---|
| 253 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 254 | # |
---|
| 255 | card=${CARD_DIR}/COMP/${compname}.card |
---|
| 256 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 257 | # |
---|
| 258 | ListFilesName=${compname}_OutputFiles_List |
---|
| 259 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 260 | # |
---|
| 261 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
[370] | 262 | # |
---|
[785] | 263 | # INITIALISATION |
---|
[370] | 264 | # |
---|
[785] | 265 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 266 | typeset i=2 |
---|
[370] | 267 | # |
---|
[785] | 268 | until [ $i -gt $NbFiles ]; do |
---|
| 269 | # |
---|
| 270 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 271 | # |
---|
| 272 | if [ X${flag_post} != XNONE ] ; then |
---|
| 273 | # |
---|
| 274 | # Check if seasonal is required for this file |
---|
| 275 | # |
---|
| 276 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
---|
| 277 | # |
---|
| 278 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
---|
| 279 | # |
---|
| 280 | # variable option allready typeset above |
---|
| 281 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
---|
| 282 | if [ ${option} = Seasonal ] ; then |
---|
| 283 | FoundSeasonal=true |
---|
| 284 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
---|
| 285 | fi |
---|
| 286 | done |
---|
| 287 | # |
---|
| 288 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
---|
| 289 | eval ${compname}_${flag_post}_Seasonal=ON |
---|
| 290 | fi |
---|
| 291 | # |
---|
| 292 | if [ ! X$( eval echo \${${compname}_${flag_post}_Seasonal} ) = XON ] ; then |
---|
| 293 | (( i=i+3 )) |
---|
| 294 | continue |
---|
| 295 | fi |
---|
| 296 | # |
---|
| 297 | # CREATE LIST |
---|
| 298 | # |
---|
| 299 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
---|
| 300 | # |
---|
| 301 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
---|
| 302 | # |
---|
| 303 | MULTI_DIRECTORY=${R_SAVE}/${comp}/Analyse/${DIR_OUT} |
---|
| 304 | # |
---|
| 305 | TestedFile=${config_UserChoices_JobName}_SE_${an_multi_deb}_${an_multi_fin}_${FILE}.nc |
---|
| 306 | # |
---|
| 307 | IGCM_sys_TestFileArchive ${MULTI_DIRECTORY}/${TestedFile} |
---|
| 308 | if [ ! $? = 0 ] ; then |
---|
| 309 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
---|
| 310 | fi |
---|
| 311 | fi |
---|
| 312 | (( i=i+3 )) |
---|
| 313 | done # until [ $i -eq $NbFiles ] |
---|
| 314 | fi |
---|
[370] | 315 | done # for comp |
---|
| 316 | |
---|
| 317 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 318 | # |
---|
| 319 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 320 | # |
---|
| 321 | i=0 |
---|
| 322 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
[370] | 323 | # |
---|
[785] | 324 | RESULT_MULTI_SE=${config_UserChoices_JobName}_SE_${an_multi_deb}_${an_multi_fin}_${file}.nc |
---|
| 325 | # Do not redo an existing SE |
---|
| 326 | IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/${DIR_OUT}/${RESULT_MULTI_SE} |
---|
| 327 | if [ $? = 0 ] ; then |
---|
| 328 | continue |
---|
| 329 | fi |
---|
[370] | 330 | # |
---|
[785] | 331 | eval file_path=\${R_OUT_${comp}}/Analyse/SE/ |
---|
| 332 | # |
---|
| 333 | (( an = an_multi_deb )) |
---|
| 334 | # Initialize array |
---|
| 335 | unset liste_file_se |
---|
| 336 | unset liste_file_se_tmp |
---|
| 337 | while [ ${an} -le ${an_multi_fin} ] ; do |
---|
| 338 | # |
---|
| 339 | an_deb=$(printf "%04i\n" ${an} ) |
---|
| 340 | # |
---|
| 341 | (( an_fin = an_deb + freq - 1 )) |
---|
| 342 | date=${an_deb}_${an_fin} |
---|
[906] | 343 | # |
---|
[785] | 344 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_SE_${date}_${file}.nc |
---|
| 345 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_SE_${date}_${file}.nc |
---|
| 346 | (( an = an + freq )) |
---|
| 347 | done |
---|
| 348 | # |
---|
| 349 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
---|
[1206] | 350 | IGCM_debug_Verif_Exit |
---|
[785] | 351 | # Search of common list of variables to be treated |
---|
| 352 | nbfile=0 |
---|
| 353 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
---|
| 354 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
---|
| 355 | (( nbfile = nbfile + 1 )) |
---|
| 356 | done |
---|
| 357 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 358 | IGCM_sys_Rm tmpfile_ncra |
---|
[370] | 359 | |
---|
[785] | 360 | # detect time counter : time or time_counter ie unlimited variable |
---|
| 361 | var_unlim=$(ncdump -h ${liste_file_se_tmp[1]}|grep UNLIMITED|awk '{print $1}') |
---|
[370] | 362 | |
---|
[785] | 363 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
---|
| 364 | # |
---|
| 365 | (( nb = ${mois} - 1 )) |
---|
| 366 | # |
---|
| 367 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
---|
| 368 | IGCM_sys_ncra -O -v ${list_var_final_ncra} -d ${var_unlim},${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
---|
| 369 | done |
---|
| 370 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
---|
| 371 | # |
---|
[370] | 372 | |
---|
[785] | 373 | # Search of common list of variables to be treated |
---|
| 374 | nbfile=0 |
---|
| 375 | for file_common_var in ${OUT_SE[*]} ; do |
---|
| 376 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncrcat |
---|
| 377 | (( nbfile = nbfile + 1 )) |
---|
| 378 | done |
---|
| 379 | list_var_final_ncrcat=`cat tmpfile_ncrcat | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 380 | IGCM_sys_Rm tmpfile_ncrcat |
---|
[370] | 381 | |
---|
[785] | 382 | IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_MULTI_SE} |
---|
| 383 | # |
---|
| 384 | IGCM_sys_Rm ${OUT_SE[*]} |
---|
| 385 | |
---|
[906] | 386 | # Put correct climatological axis following calendar |
---|
[785] | 387 | case ${config_UserChoices_CalendarType} in |
---|
| 388 | 360d|360_day) |
---|
| 389 | # 360 days |
---|
| 390 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15, 45, 75, 105, 135, 165, 195, 225, 255, 285, 315, 345.} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 30, 30, 60, 60, 90, 90, 120, 120, 150, 150, 180, 180, 210, 210, 240, 240, 270, 270, 300, 300, 330, 330, 360.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"360_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 391 | ;; |
---|
| 392 | noleap|365_day) |
---|
| 393 | # 365 days |
---|
| 394 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45, 74.5, 105, 135.5, 166, 196.5, 227.5, 258, 288.5, 319, 349.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59, 59, 90, 90, 120, 120, 151, 151, 181, 181, 212, 212, 243, 243, 273, 273, 304, 304, 334, 334, 365.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"365_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 395 | ;; |
---|
| 396 | all_leap|366_day) |
---|
| 397 | # 366 days |
---|
| 398 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.5, 75.5, 106, 136.5, 167, 197.5, 228.5, 259, 289.5, 320, 350.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 60, 60, 91, 91, 121, 121, 152, 152, 182, 182, 213, 213, 244, 244, 274, 274, 305, 305, 335, 335, 366.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"366_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 399 | ;; |
---|
| 400 | leap|gregorian|standard) |
---|
| 401 | # 365.2425 days |
---|
| 402 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.12125, 74.7425, 105.2425, 135.7425, 166.2425, 196.7425, 227.7425, 258.2425, 288.7425, 319.2425, 349.7425} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59.2425, 59.2425, 90.2425, 90.2425, 120.2425, 120.2425, 151.2425, 151.2425, 181.2425, 181.2425, 212.2425, 212.2425, 243.2425, 243.2425, 273.2425, 273.2425, 304.2425, 304.2425, 334.2425, 334.2425, 365.2425} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"gregorian\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 403 | ;; |
---|
| 404 | esac |
---|
| 405 | eval IGCM_sys_ncap2 -Oh -s $ncap2cmd ${RESULT_MULTI_SE} tmp.nc |
---|
| 406 | IGCM_sys_Rm ${RESULT_MULTI_SE} |
---|
| 407 | IGCM_sys_Mv tmp.nc ${RESULT_MULTI_SE} |
---|
| 408 | # |
---|
| 409 | eval IGCM_sys_Put_Out ${RESULT_MULTI_SE} \${R_OUT_${comp}}/Analyse/${DIR_OUT}/${RESULT_MULTI_SE} |
---|
| 410 | IGCM_sys_Rm ${RESULT_MULTI_SE} |
---|
| 411 | # |
---|
| 412 | done |
---|
[370] | 413 | done |
---|
| 414 | |
---|
| 415 | # DODS copy |
---|
[903] | 416 | if [ X${config_Post_DodsCopy} = XTRUE ] ; then |
---|
| 417 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 418 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${DIR_OUT} |
---|
| 419 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${DIR_OUT} |
---|
| 420 | done |
---|
| 421 | fi |
---|
[370] | 422 | |
---|
[903] | 423 | # Temporal coverage id for atlas |
---|
[370] | 424 | YEARS=${an_multi_deb}_${an_multi_fin} |
---|
| 425 | |
---|
[1112] | 426 | export DEBUG_debug; export BigBrother ; export libIGCM; export SUBMIT_DIR; export POST_DIR; export Script_Output ; |
---|
| 427 | export StandAlone ; export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; |
---|
| 428 | export RESOL_SBG ; export YEARS; export DIR_OUT |
---|
| 429 | listVarEnv="DEBUG_debug,BigBrother,libIGCM,SUBMIT_DIR,POST_DIR,Script_Post_Output,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,YEARS,DIR_OUT" |
---|
[370] | 430 | export listVarEnv; |
---|
| 431 | |
---|
| 432 | #D- |
---|
| 433 | # -------------------------------------------------------------------- |
---|
| 434 | #D- Test if all was right before ATLAS |
---|
| 435 | # -------------------------------------------------------------------- |
---|
[1206] | 436 | IGCM_debug_Verif_Exit |
---|
[370] | 437 | |
---|
| 438 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
---|
| 439 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
---|
| 440 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
---|
[785] | 441 | # |
---|
[1112] | 442 | export Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 443 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 444 | export Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
| 445 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 446 | export Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 447 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 448 | export Script_Post_Output=additionnal.${PeriodDateEnd} ; |
---|
| 449 | IGCM_sys_QsubPost additionnal ; |
---|
[785] | 450 | # |
---|
[1112] | 451 | elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] || \ |
---|
| 452 | [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || \ |
---|
| 453 | [ ${config_UserChoices_TagName} = "IPSLCM5B" ] || \ |
---|
| 454 | [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || \ |
---|
[1377] | 455 | [ ${config_UserChoices_TagName} = "IPSLCM5A2" ] || \ |
---|
[1112] | 456 | [ ${config_UserChoices_TagName} = "IPSLCM6" ] ; then |
---|
| 457 | export Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 458 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 459 | export Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
| 460 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 461 | export Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 462 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 463 | export Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 464 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
[785] | 465 | # |
---|
[1112] | 466 | elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
---|
| 467 | [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
---|
[370] | 468 | [ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then |
---|
[785] | 469 | # |
---|
[1112] | 470 | export Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
| 471 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 472 | export Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 473 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
[785] | 474 | # |
---|
[370] | 475 | elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then |
---|
[785] | 476 | # |
---|
[1112] | 477 | export Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
| 478 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
[785] | 479 | # |
---|
[1112] | 480 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
---|
[370] | 481 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
---|
[785] | 482 | # |
---|
[1112] | 483 | export Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 484 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
[785] | 485 | # |
---|
[1112] | 486 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] || \ |
---|
| 487 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || \ |
---|
| 488 | [ ${config_UserChoices_TagName} = "ORCA2_LIM3" ] ; then |
---|
[785] | 489 | # |
---|
[1112] | 490 | export Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 491 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
[785] | 492 | # |
---|
[1112] | 493 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] || \ |
---|
| 494 | [ ${config_UserChoices_TagName} = "ORCA2_LIM3_PISCES" ] ; then |
---|
[785] | 495 | # |
---|
[1112] | 496 | export Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 497 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 498 | export Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 499 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
[785] | 500 | # |
---|
[1112] | 501 | elif [ ${config_UserChoices_TagName} = "ORCA2_OFF_PISCES" ] ; then |
---|
| 502 | # |
---|
| 503 | export Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 504 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
| 505 | # |
---|
[370] | 506 | fi |
---|
| 507 | |
---|
[590] | 508 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[370] | 509 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
[1198] | 510 | |
---|
| 511 | # ------------------------------------------------------------------ |
---|
| 512 | # Finalize BigBrother to inform that the jobs end |
---|
| 513 | # ------------------------------------------------------------------ |
---|
| 514 | IGCM_debug_BigBro_Finalize |
---|