source: trunk/libIGCM/AA_atlas_ORCHIDEE @ 712

Last change on this file since 712 was 712, checked in by aclsce, 12 years ago
  • Added TaskType? variable in jobs to specify the type of the job (computing or post-processing).
  • Added the use of TaskType? variable in Curie libsys to source the appropriate .atlas_env* configuration file.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.9 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_ORCH       # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_ORCH       # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- curie #MSUB -q large
20#-Q- curie #MSUB -Q normal
21#-Q- curie set +x
22#-Q- platine #!/usr/bin/ksh
23#-Q- platine ##################
24#-Q- platine ## PLATINE   CEA ##
25#-Q- platine ##################
26#-Q- platine #BSUB -J ATL_ORCH          # Nom du job
27#-Q- platine #BSUB -N                   # message a la fin du job
28#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
29#-Q- platine #BSUB -W 1:00              # Limite temps
30#-Q- platine #BSUB -q post              # Passage en queue post
31#-Q- platine #BSUB -L /bin/ksh
32#-Q- sx8brodie #!/bin/ksh
33#-Q- sx8brodie #######################
34#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
35#-Q- sx8brodie #######################
36#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
37#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
38#-Q- sx8brodie # Nom du travail LoadLeveler
39#-Q- sx8brodie # @ job_name   = ATL_ORCH
40#-Q- sx8brodie # Fichier de sortie standard du travail       
41#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
42#-Q- sx8brodie # Fichier de sortie d'erreur du travail
43#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
44#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
45#-Q- sx8brodie # @ notification = error
46#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
47#-Q- sx8brodie # @ queue
48#-Q- aix6 #!/bin/ksh
49#-Q- aix6 #######################
50#-Q- aix6 ##   VARGAS   IDRIS  ##
51#-Q- aix6 #######################
52#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
53#-Q- aix6 # @ wall_clock_limit = 1:00:00
54#-Q- aix6 # Nom du travail LoadLeveler
55#-Q- aix6 # @ job_name   = ATL_ORCH
56#-Q- aix6 # Fichier de sortie standard du travail       
57#-Q- aix6 # @ output     = $(job_name).$(jobid)
58#-Q- aix6 # Fichier de sortie d'erreur du travail
59#-Q- aix6 # @ error      =  $(job_name).$(jobid)
60#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
61#-Q- aix6 # @ notification = error
62#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
63#-Q- aix6 # @ queue
64#-Q- ulam #!/bin/ksh
65#-Q- ulam #######################
66#-Q- ulam ##   ULAM   IDRIS  ##
67#-Q- ulam #######################
68#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
69#-Q- ulam # @ wall_clock_limit = 1:00:00
70#-Q- ulam # Nom du travail LoadLeveler
71#-Q- ulam # @ job_name   = ATL_ORCH
72#-Q- ulam # Fichier de sortie standard du travail       
73#-Q- ulam # @ output     = $(job_name).$(jobid)
74#-Q- ulam # Fichier de sortie d'erreur du travail
75#-Q- ulam # @ error      =  $(job_name).$(jobid)
76#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
77#-Q- ulam # @ notification = error
78#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
79#-Q- ulam # @ queue
80#-Q- sx8mercure #!/bin/ksh
81#-Q- sx8mercure ######################
82#-Q- sx8mercure ## SX8MERCURE   CEA ##
83#-Q- sx8mercure ######################
84#-Q- sx8mercure #PBS -N  ATL_ORCH            # Nom du job
85#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
86#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
87#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
88#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
89#-Q- sx8mercure #PBS -q scalaire
90#-Q- sx8mercure #PBS -r n
91#-Q- sx9mercure #!/bin/ksh
92#-Q- sx9mercure ######################
93#-Q- sx9mercure ## SX9MERCURE  CCRT ##
94#-Q- sx9mercure ######################
95#-Q- sx9mercure #PBS -N  ATL_ORCH            # Nom du job
96#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
97#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
98#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
99#-Q- sx9mercure #PBS -l elapstim_req=1:00:00   # Limite temps a 2 heures
100#-Q- sx9mercure #PBS -q scalaire
101#-Q- sx9mercure #PBS -r n
102#-Q- titane #!/bin/ksh
103#-Q- titane ######################
104#-Q- titane ## TITANE   CEA ##
105#-Q- titane ######################
106#-Q- titane #MSUB -r ATL_ORCH       # Nom du job               
107#-Q- titane #MSUB -eo
108#-Q- titane #MSUB -n 1              # Reservation du processus
109#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
110#-Q- titane #MSUB -q mono
111#-Q- titane #MSUB -E '-rn'
112#-Q- lxiv8 ######################
113#-Q- lxiv8 ## OBELIX      LSCE ##
114#-Q- lxiv8 ######################
115#-Q- lxiv8 #PBS -N ATL_ORCH
116#-Q- lxiv8 #PBS -m a
117#-Q- lxiv8 #PBS -j oe
118#-Q- lxiv8 #PBS -q medium
119#-Q- lxiv8 #PBS -o ATL_ORCH.$$
120#-Q- lxiv8 #PBS -S /bin/ksh
121#-Q- default #!/bin/ksh
122#-Q- default ##################
123#-Q- default ## DEFAULT HOST ##
124#-Q- default ##################
125
126#**************************************************************
127# Author: Martial Mancip
128# Contact: Martial.Mancip__at__ipsl.jussieu.fr
129# $Revision::                                          $ Revision of last commit
130# $Author::                                            $ Author of last commit
131# $Date::                                              $ Date of last commit
132# IPSL (2006)
133#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
134#
135#**************************************************************
136
137#set -eu
138#set -vx
139
140date
141
142#-Q- sx8brodie export OMP_NUM_THREADS=1
143#-Q- aix6 export OMP_NUM_THREADS=1
144#-Q- ulam export OMP_NUM_THREADS=1
145
146#D- Task type (computing or post-processing)
147TaskType=post-processing
148
149########################################################################
150
151. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
152      ( ${DEBUG_debug} ) && IGCM_debug_Check
153. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
154     ( ${DEBUG_debug} ) && IGCM_card_Check
155. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
156     ( ${DEBUG_debug} ) && IGCM_date_Check
157#-------
158. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
159
160########################################################################
161
162#set -vx
163
164IGCM_sys_MkdirWork ${RUN_DIR_PATH}
165IGCM_sys_Cd ${RUN_DIR_PATH}
166
167# ------------------------------------------------------------------
168# Test if all was right before proceeding further
169# ------------------------------------------------------------------
170IGCM_debug_Verif_Exit_Post
171
172if [ ${StandAlone} = true ] ; then
173    CARD_DIR=${SUBMIT_DIR}
174else
175    CARD_DIR=${RUN_DIR_PATH}
176    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
177    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
178    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
179    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
180fi
181#
182# First of all
183#
184IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
185typeset option
186for option in ${config_UserChoices[*]} ; do
187    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
188done
189
190IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card Ensemble
191typeset option
192for option in ${config_Ensemble[*]} ; do
193    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option}
194done
195#
196echo
197IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
198IGCM_debug_PrintVariables 3 config_UserChoices_JobName
199IGCM_debug_PrintVariables 3 config_UserChoices_LongName
200IGCM_debug_PrintVariables 3 config_UserChoices_TagName
201IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
202IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
203IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
204IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
205IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
206IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
207IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName
208IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate
209echo
210
211#==================================
212#R_SAVE : Job output directory
213#R_BUFR : Job output buffered directory
214if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
215  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
216  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
217    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
218    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
219    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
220    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
221  else
222    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
223    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
224    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
225    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
226  fi
227else
228  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
229    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
230    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
231    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
232    R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
233  else
234    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
235    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
236    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
237    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
238  fi
239fi
240#
241IGCM_sys_MkdirArchive ${R_FIGR}
242
243R_ATLAS=ATLAS/SE_${YEARS}
244R_OUT_SRF=${R_SAVE}/SRF
245DIR_OUT=${DIR_OUT:=SE}
246
247RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS}
248IGCM_sys_MkdirWork ${RUN_DIR}
249IGCM_sys_Cd ${RUN_DIR}
250
251# --------------------------------------------
252# Insert your commands between III...III lines
253# and precise produced directories to save
254# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
255
256IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR}
257
258atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \
259                                       ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \
260                                       ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
261
262# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
263
264# Put ferret journal files together
265for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do 
266    echo -e "\n\n################################" ;
267    echo -e "$file\n" ; cat $file ;
268done  > ${R_ATLAS}/SRF/allferretscript.txt
269
270# Clear some files
271find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
272
273# Save files
274IGCM_sys_Put_Dir ATLAS ${R_FIGR}
275IGCM_sys_Rm -Rf ATLAS
276IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
277
278# DODS copy
279IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
280[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
281
282# Clean RUN_DIR_PATH (necessary for cesium and titane only)
283IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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