source: trunk/libIGCM/AA_atlas_ORCHIDEE @ 591

Last change on this file since 591 was 591, checked in by sdipsl, 12 years ago
  • adapt TSC and create_ts to work with packed files
  • adapt dods related functions to work with work/store
  • bugfixes
  • replace tabulation by 2 space in TSC (svn diff -x -w)
    • sorry for the inconvenience but it will really help on the long run.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 10.3 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_ORCH       # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ##################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ##################
15#-Q- platine #BSUB -J ATL_ORCH          # Nom du job
16#-Q- platine #BSUB -N                   # message a la fin du job
17#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 1:00              # Limite temps
19#-Q- platine #BSUB -q post              # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = ATL_ORCH
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 1:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = ATL_ORCH
45#-Q- aix6 # Fichier de sortie standard du travail       
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   ULAM   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 1:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = ATL_ORCH
61#-Q- ulam # Fichier de sortie standard du travail       
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N  ATL_ORCH            # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure #########################
81#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
82#-Q- sx9mercure #########################
83#-Q- sx9mercure #MSUB -r ATL_ORCH       # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r ATL_ORCH       # Nom du job               
94#-Q- titane #MSUB -eo
95#-Q- titane #MSUB -n 1              # Reservation du processus
96#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
97#-Q- titane #MSUB -q mono
98#-Q- lxiv8 ######################
99#-Q- lxiv8 ## OBELIX      LSCE ##
100#-Q- lxiv8 ######################
101#-Q- lxiv8 #PBS -N ATL_ORCH
102#-Q- lxiv8 #PBS -m a
103#-Q- lxiv8 #PBS -j oe
104#-Q- lxiv8 #PBS -q medium
105#-Q- lxiv8 #PBS -o ATL_ORCH.$$
106#-Q- lxiv8 #PBS -S /bin/ksh
107#-Q- default #!/bin/ksh
108#-Q- default ##################
109#-Q- default ## DEFAULT HOST ##
110#-Q- default ##################
111
112#**************************************************************
113# Author: Martial Mancip
114# Contact: Martial.Mancip__at__ipsl.jussieu.fr
115# $Revision::                                          $ Revision of last commit
116# $Author::                                            $ Author of last commit
117# $Date::                                              $ Date of last commit
118# IPSL (2006)
119#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
120#
121#**************************************************************
122
123#set -eu
124#set -vx
125
126date
127
128#-Q- sx8brodie export OMP_NUM_THREADS=1
129#-Q- aix6 export OMP_NUM_THREADS=1
130#-Q- ulam export OMP_NUM_THREADS=1
131
132########################################################################
133
134. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
135      ( ${DEBUG_debug} ) && IGCM_debug_Check
136. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
137     ( ${DEBUG_debug} ) && IGCM_card_Check
138. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
139     ( ${DEBUG_debug} ) && IGCM_date_Check
140#-------
141. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
142
143########################################################################
144
145#set -vx
146
147IGCM_sys_MkdirWork ${RUN_DIR_PATH}
148IGCM_sys_Cd ${RUN_DIR_PATH}
149
150# ------------------------------------------------------------------
151# Test if all was right before proceeding further
152# ------------------------------------------------------------------
153IGCM_debug_Verif_Exit_Post
154
155if [ ${StandAlone} = true ] ; then
156    CARD_DIR=${SUBMIT_DIR}
157else
158    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
159    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
160fi
161#
162# First of all
163#
164IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
165typeset option
166for option in ${config_UserChoices[*]} ; do
167    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
168done
169#
170echo
171IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
172IGCM_debug_PrintVariables 3 config_UserChoices_JobName
173IGCM_debug_PrintVariables 3 config_UserChoices_LongName
174IGCM_debug_PrintVariables 3 config_UserChoices_TagName
175IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
176IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
177IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
178IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
179IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
180IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
181echo
182
183#==================================
184#R_SAVE : Job output directory
185#R_BUFR : Job output buffered directory
186if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
187    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
188    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
189    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
190    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
191    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
192else
193    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
194    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
195    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
196    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
197fi
198#
199IGCM_sys_MkdirArchive ${R_FIGR}
200
201R_ATLAS=ATLAS/SE_${YEARS}
202R_OUT_SRF=${R_SAVE}/SRF
203DIR_OUT=${DIR_OUT:=SE}
204
205RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS}
206IGCM_sys_MkdirWork ${RUN_DIR}
207IGCM_sys_Cd ${RUN_DIR}
208
209# --------------------------------------------
210# Insert your commands between III...III lines
211# and precise produced directories to save
212# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
213
214IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR}
215
216atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \
217                                       ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \
218                                       ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
219
220# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
221
222# Put ferret journal files together
223for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do 
224    echo -e "\n\n################################" ;
225    echo -e "$file\n" ; cat $file ;
226done  > ${R_ATLAS}/SRF/allferretscript.txt
227
228# Clear some files
229find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
230
231# Save files
232IGCM_sys_Put_Dir ATLAS ${R_FIGR}
233IGCM_sys_Rm -Rf ATLAS
234IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
235
236# DODS copy
237IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
238[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
239
240# Clean RUN_DIR_PATH (necessary for cesium and titane only)
241IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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