[314] | 1 | #-Q- cesium #!/bin/ksh |
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| 2 | #-Q- cesium ###################### |
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| 3 | #-Q- cesium ## CESIUM CEA ## |
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| 4 | #-Q- cesium ###################### |
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| 5 | #-Q- cesium #MSUB -r ATL_ORCH # Nom du job |
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| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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| 9 | #-Q- cesium #MSUB -E "-j o" |
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| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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[622] | 11 | #-Q- curie ###################### |
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| 12 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 13 | #-Q- curie ###################### |
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[626] | 14 | #-Q- curie #MSUB -r ATL_ORCH # Nom du job |
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[622] | 15 | #-Q- curie #MSUB -eo |
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| 16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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[643] | 18 | #-Q- curie #MSUB -E '--no-requeue' |
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[681] | 19 | #-Q- curie #MSUB -q large |
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[704] | 20 | #-Q- curie #MSUB -Q normal |
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[681] | 21 | #-Q- curie set +x |
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[2] | 22 | #-Q- platine #!/usr/bin/ksh |
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| 23 | #-Q- platine ################## |
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| 24 | #-Q- platine ## PLATINE CEA ## |
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| 25 | #-Q- platine ################## |
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| 26 | #-Q- platine #BSUB -J ATL_ORCH # Nom du job |
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| 27 | #-Q- platine #BSUB -N # message a la fin du job |
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| 28 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 29 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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[18] | 30 | #-Q- platine #BSUB -q post # Passage en queue post |
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[426] | 31 | #-Q- platine #BSUB -L /bin/ksh |
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[59] | 32 | #-Q- sx8brodie #!/bin/ksh |
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[2] | 33 | #-Q- sx8brodie ####################### |
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| 34 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 35 | #-Q- sx8brodie ####################### |
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[58] | 36 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[504] | 37 | #-Q- sx8brodie # @ wall_clock_limit = 1:00:00 |
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[58] | 38 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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[60] | 39 | #-Q- sx8brodie # @ job_name = ATL_ORCH |
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[58] | 40 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 41 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 42 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 43 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 44 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 45 | #-Q- sx8brodie # @ notification = error |
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[370] | 46 | #-Q- sx8brodie # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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[58] | 47 | #-Q- sx8brodie # @ queue |
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[68] | 48 | #-Q- aix6 #!/bin/ksh |
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| 49 | #-Q- aix6 ####################### |
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| 50 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 51 | #-Q- aix6 ####################### |
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| 52 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[504] | 53 | #-Q- aix6 # @ wall_clock_limit = 1:00:00 |
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[68] | 54 | #-Q- aix6 # Nom du travail LoadLeveler |
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| 55 | #-Q- aix6 # @ job_name = ATL_ORCH |
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| 56 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 57 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 58 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 59 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 60 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 61 | #-Q- aix6 # @ notification = error |
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[370] | 62 | #-Q- aix6 # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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[68] | 63 | #-Q- aix6 # @ queue |
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[386] | 64 | #-Q- ulam #!/bin/ksh |
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| 65 | #-Q- ulam ####################### |
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| 66 | #-Q- ulam ## ULAM IDRIS ## |
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| 67 | #-Q- ulam ####################### |
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| 68 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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[500] | 69 | #-Q- ulam # @ wall_clock_limit = 1:00:00 |
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[386] | 70 | #-Q- ulam # Nom du travail LoadLeveler |
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| 71 | #-Q- ulam # @ job_name = ATL_ORCH |
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| 72 | #-Q- ulam # Fichier de sortie standard du travail |
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| 73 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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| 74 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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| 75 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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| 76 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 77 | #-Q- ulam # @ notification = error |
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| 78 | #-Q- ulam # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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| 79 | #-Q- ulam # @ queue |
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[2] | 80 | #-Q- sx8mercure #!/bin/ksh |
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| 81 | #-Q- sx8mercure ###################### |
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| 82 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 83 | #-Q- sx8mercure ###################### |
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| 84 | #-Q- sx8mercure #PBS -N ATL_ORCH # Nom du job |
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| 85 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 86 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 87 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 88 | #-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 2 heures |
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[299] | 89 | #-Q- sx8mercure #PBS -q scalaire |
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[640] | 90 | #-Q- sx8mercure #PBS -r n |
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[172] | 91 | #-Q- sx9mercure #!/bin/ksh |
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[616] | 92 | #-Q- sx9mercure ###################### |
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| 93 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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| 94 | #-Q- sx9mercure ###################### |
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| 95 | #-Q- sx9mercure #PBS -N ATL_ORCH # Nom du job |
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| 96 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 97 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 98 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 99 | #-Q- sx9mercure #PBS -l elapstim_req=1:00:00 # Limite temps a 2 heures |
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| 100 | #-Q- sx9mercure #PBS -q scalaire |
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[640] | 101 | #-Q- sx9mercure #PBS -r n |
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[222] | 102 | #-Q- titane #!/bin/ksh |
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| 103 | #-Q- titane ###################### |
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| 104 | #-Q- titane ## TITANE CEA ## |
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| 105 | #-Q- titane ###################### |
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| 106 | #-Q- titane #MSUB -r ATL_ORCH # Nom du job |
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[544] | 107 | #-Q- titane #MSUB -eo |
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[222] | 108 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 109 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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[544] | 110 | #-Q- titane #MSUB -q mono |
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[643] | 111 | #-Q- titane #MSUB -E '-rn' |
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[281] | 112 | #-Q- lxiv8 ###################### |
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| 113 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 114 | #-Q- lxiv8 ###################### |
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| 115 | #-Q- lxiv8 #PBS -N ATL_ORCH |
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| 116 | #-Q- lxiv8 #PBS -m a |
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| 117 | #-Q- lxiv8 #PBS -j oe |
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| 118 | #-Q- lxiv8 #PBS -q medium |
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| 119 | #-Q- lxiv8 #PBS -o ATL_ORCH.$$ |
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| 120 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 121 | #-Q- default #!/bin/ksh |
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| 122 | #-Q- default ################## |
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| 123 | #-Q- default ## DEFAULT HOST ## |
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| 124 | #-Q- default ################## |
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| 125 | |
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[373] | 126 | #************************************************************** |
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| 127 | # Author: Martial Mancip |
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| 128 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 129 | # $Revision:: $ Revision of last commit |
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| 130 | # $Author:: $ Author of last commit |
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| 131 | # $Date:: $ Date of last commit |
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[2] | 132 | # IPSL (2006) |
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| 133 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 134 | # |
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| 135 | #************************************************************** |
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[2] | 136 | |
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[108] | 137 | #set -eu |
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| 138 | #set -vx |
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| 139 | |
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[2] | 140 | date |
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| 141 | |
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| 142 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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[108] | 143 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[386] | 144 | #-Q- ulam export OMP_NUM_THREADS=1 |
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[2] | 145 | |
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[712] | 146 | #D- Task type (computing or post-processing) |
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| 147 | TaskType=post-processing |
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| 148 | |
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[2] | 149 | ######################################################################## |
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| 150 | |
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[108] | 151 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 152 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 153 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 154 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 155 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 156 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 157 | #------- |
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| 158 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[2] | 159 | |
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| 160 | ######################################################################## |
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| 161 | |
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| 162 | #set -vx |
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| 163 | |
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[263] | 164 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 165 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 166 | |
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[436] | 167 | # ------------------------------------------------------------------ |
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| 168 | # Test if all was right before proceeding further |
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| 169 | # ------------------------------------------------------------------ |
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| 170 | IGCM_debug_Verif_Exit_Post |
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| 171 | |
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[263] | 172 | if [ ${StandAlone} = true ] ; then |
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| 173 | CARD_DIR=${SUBMIT_DIR} |
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| 174 | else |
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[647] | 175 | CARD_DIR=${RUN_DIR_PATH} |
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[640] | 176 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 177 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 178 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 179 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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[263] | 180 | fi |
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| 181 | # |
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| 182 | # First of all |
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| 183 | # |
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| 184 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 185 | typeset option |
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| 186 | for option in ${config_UserChoices[*]} ; do |
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| 187 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 188 | done |
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[658] | 189 | |
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| 190 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Ensemble |
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| 191 | typeset option |
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| 192 | for option in ${config_Ensemble[*]} ; do |
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| 193 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option} |
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| 194 | done |
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[263] | 195 | # |
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| 196 | echo |
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| 197 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 198 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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| 199 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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| 200 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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| 201 | IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName |
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| 202 | IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName |
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| 203 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 204 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 205 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 206 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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[658] | 207 | IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName |
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| 208 | IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate |
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[263] | 209 | echo |
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| 210 | |
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| 211 | #================================== |
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| 212 | #R_SAVE : Job output directory |
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[546] | 213 | #R_BUFR : Job output buffered directory |
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[263] | 214 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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[658] | 215 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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| 216 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
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| 217 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 218 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 219 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 220 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 221 | else |
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[263] | 222 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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[587] | 223 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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[546] | 224 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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[263] | 225 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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[658] | 226 | fi |
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[263] | 227 | else |
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[658] | 228 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
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| 229 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 230 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 231 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 232 | R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 233 | else |
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[263] | 234 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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[587] | 235 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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[546] | 236 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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[263] | 237 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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[658] | 238 | fi |
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[263] | 239 | fi |
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| 240 | # |
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[591] | 241 | IGCM_sys_MkdirArchive ${R_FIGR} |
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[263] | 242 | |
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[2] | 243 | R_ATLAS=ATLAS/SE_${YEARS} |
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| 244 | R_OUT_SRF=${R_SAVE}/SRF |
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[370] | 245 | DIR_OUT=${DIR_OUT:=SE} |
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[2] | 246 | |
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| 247 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS} |
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| 248 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 249 | IGCM_sys_Cd ${RUN_DIR} |
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| 250 | |
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| 251 | # -------------------------------------------- |
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| 252 | # Insert your commands between III...III lines |
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| 253 | # and precise produced directories to save |
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| 254 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 255 | |
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[370] | 256 | IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR} |
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[2] | 257 | |
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| 258 | atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \ |
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| 259 | ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \ |
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| 260 | ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc |
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| 261 | |
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| 262 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 263 | |
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| 264 | # Put ferret journal files together |
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| 265 | for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do |
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| 266 | echo -e "\n\n################################" ; |
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| 267 | echo -e "$file\n" ; cat $file ; |
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| 268 | done > ${R_ATLAS}/SRF/allferretscript.txt |
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| 269 | |
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| 270 | # Clear some files |
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| 271 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
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| 272 | |
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| 273 | # Save files |
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[587] | 274 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
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[2] | 275 | IGCM_sys_Rm -Rf ATLAS |
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| 276 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc |
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| 277 | |
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| 278 | # DODS copy |
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[587] | 279 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
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[67] | 280 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
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[203] | 281 | |
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[590] | 282 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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[203] | 283 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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