1 | #-Q- cesium #!/bin/ksh |
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2 | #-Q- cesium ###################### |
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3 | #-Q- cesium ## CESIUM CEA ## |
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4 | #-Q- cesium ###################### |
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5 | #-Q- cesium #MSUB -r ATL_OPA # Nom du job |
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6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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9 | #-Q- cesium #MSUB -E "-j o" |
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10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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11 | #-Q- platine #!/usr/bin/ksh |
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12 | #-Q- platine ################## |
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13 | #-Q- platine ## PLATINE CEA ## |
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14 | #-Q- platine ################## |
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15 | #-Q- platine #BSUB -J ATL_OPA # Nom du job |
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16 | #-Q- platine #BSUB -N # message a la fin du job |
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17 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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18 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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19 | #-Q- platine #BSUB -q post # Passage en queue post |
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20 | #-Q- platine #BSUB -L /bin/ksh |
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21 | #-Q- sx8brodie #!/bin/ksh |
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22 | #-Q- sx8brodie ####################### |
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23 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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24 | #-Q- sx8brodie ####################### |
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25 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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26 | #-Q- sx8brodie # @ wall_clock_limit = 2:00:00 |
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27 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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28 | #-Q- sx8brodie # @ job_name = ATL_OPA |
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29 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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30 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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31 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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32 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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33 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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34 | #-Q- sx8brodie # @ notification = error |
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35 | #-Q- sx8brodie # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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36 | #-Q- sx8brodie # @ queue |
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37 | #-Q- aix6 #!/bin/ksh |
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38 | #-Q- aix6 ####################### |
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39 | #-Q- aix6 ## VARGAS IDRIS ## |
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40 | #-Q- aix6 ####################### |
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41 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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42 | #-Q- aix6 # @ wall_clock_limit = 2:00:00 |
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43 | #-Q- aix6 # Nom du travail LoadLeveler |
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44 | #-Q- aix6 # @ job_name = ATL_OPA |
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45 | #-Q- aix6 # Fichier de sortie standard du travail |
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46 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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47 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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48 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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49 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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50 | #-Q- aix6 # @ notification = error |
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51 | #-Q- aix6 # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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52 | #-Q- aix6 # @ queue |
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53 | #-Q- ulam #!/bin/ksh |
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54 | #-Q- ulam ####################### |
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55 | #-Q- ulam ## ULAM IDRIS ## |
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56 | #-Q- ulam ####################### |
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57 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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58 | #-Q- ulam # @ wall_clock_limit = 2:00:00 |
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59 | #-Q- ulam # Nom du travail LoadLeveler |
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60 | #-Q- ulam # @ job_name = ATL_OPA |
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61 | #-Q- ulam # Fichier de sortie standard du travail |
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62 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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63 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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64 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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65 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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66 | #-Q- ulam # @ notification = error |
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67 | #-Q- ulam # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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68 | #-Q- ulam # @ queue |
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69 | #-Q- sx8mercure #!/bin/ksh |
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70 | #-Q- sx8mercure ###################### |
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71 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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72 | #-Q- sx8mercure ###################### |
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73 | #-Q- sx8mercure #PBS -N ATL_OPA # Nom du job |
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74 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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75 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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76 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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77 | #-Q- sx8mercure #PBS -l cputim_job=2:00:00 # Limite temps a 2 heures |
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78 | #-Q- sx8mercure #PBS -q scalaire |
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79 | #-Q- sx9mercure #!/bin/ksh |
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80 | #-Q- sx9mercure ######################### |
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81 | #-Q- sx9mercure ## CESIUM FOR SX9 CEA ## |
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82 | #-Q- sx9mercure ######################### |
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83 | #-Q- sx9mercure #MSUB -r ATL_OPA # Nom du job |
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84 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
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85 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
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86 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
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87 | #-Q- sx9mercure #MSUB -E "-j o" |
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88 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
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89 | #-Q- titane #!/bin/ksh |
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90 | #-Q- titane ###################### |
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91 | #-Q- titane ## TITANE CEA ## |
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92 | #-Q- titane ###################### |
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93 | #-Q- titane #MSUB -r ATL_OPA # Nom du job |
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94 | #-Q- titane #MSUB -eo |
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95 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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96 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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97 | #-Q- titane #MSUB -q mono |
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98 | #-Q- default #!/bin/ksh |
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99 | #-Q- default ################## |
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100 | #-Q- default ## DEFAULT HOST ## |
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101 | #-Q- default ################## |
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102 | |
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103 | #************************************************************** |
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104 | # Author: Sebastien Denvil |
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105 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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106 | # $Revision:: $ Revision of last commit |
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107 | # $Author:: $ Author of last commit |
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108 | # $Date:: $ Date of last commit |
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109 | # IPSL (2006) |
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110 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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111 | # |
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112 | #************************************************************** |
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113 | |
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114 | #set -eu |
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115 | #set -vx |
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116 | |
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117 | date |
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118 | |
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119 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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120 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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121 | #-Q- ulam export OMP_NUM_THREADS=1 |
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122 | |
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123 | ######################################################################## |
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124 | |
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125 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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126 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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127 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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128 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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129 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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130 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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131 | #------- |
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132 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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133 | |
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134 | ######################################################################## |
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135 | |
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136 | #set -vx |
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137 | |
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138 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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139 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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140 | |
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141 | # ------------------------------------------------------------------ |
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142 | # Test if all was right before proceeding further |
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143 | # ------------------------------------------------------------------ |
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144 | IGCM_debug_Verif_Exit_Post |
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145 | |
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146 | if [ ${StandAlone} = true ] ; then |
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147 | CARD_DIR=${SUBMIT_DIR} |
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148 | else |
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149 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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150 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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151 | fi |
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152 | # |
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153 | # First of all |
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154 | # |
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155 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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156 | typeset option |
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157 | for option in ${config_UserChoices[*]} ; do |
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158 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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159 | done |
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160 | # |
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161 | echo |
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162 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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163 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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164 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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165 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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166 | IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName |
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167 | IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName |
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168 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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169 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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170 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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171 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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172 | echo |
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173 | |
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174 | #================================== |
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175 | #R_SAVE : Job output directory |
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176 | #R_BUFR : Job output buffered directory |
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177 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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178 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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179 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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180 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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181 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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182 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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183 | else |
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184 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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185 | R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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186 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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187 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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188 | fi |
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189 | # |
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190 | IGCM_sys_MkdirArchive ${R_FIGR} |
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191 | |
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192 | R_ATLAS=ATLAS/SE_${YEARS} |
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193 | R_OUT_OCE=${R_SAVE}/OCE |
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194 | R_OUT_ICE=${R_SAVE}/ICE |
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195 | DIR_OUT=${DIR_OUT:=SE} |
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196 | |
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197 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS} |
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198 | IGCM_sys_MkdirWork ${RUN_DIR} |
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199 | IGCM_sys_Cd ${RUN_DIR} |
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200 | |
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201 | # -------------------------------------------- |
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202 | # Insert your commands between III...III lines |
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203 | # and precise produced directories to save |
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204 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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205 | |
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206 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${RUN_DIR} |
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207 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc ${RUN_DIR} |
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208 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc ${RUN_DIR} |
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209 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc ${RUN_DIR} |
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210 | IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc ${RUN_DIR} |
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211 | |
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212 | atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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213 | atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc |
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214 | atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc |
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215 | #atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc |
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216 | atlas -o ${RUN_DIR}/${R_ATLAS}/OCE -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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217 | atlas -o ${RUN_DIR}/${R_ATLAS}/ICE -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc |
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218 | |
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219 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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220 | |
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221 | # Put ferret journal files together |
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222 | for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do |
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223 | echo -e "\n\n################################" ; |
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224 | echo -e "$file\n" ; cat $file ; |
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225 | done > ${R_ATLAS}/OCE_T/allferretscript.txt |
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226 | |
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227 | for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do |
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228 | echo -e "\n\n################################" ; |
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229 | echo -e "$file\n" ; cat $file ; |
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230 | done > ${R_ATLAS}/OCE_U/allferretscript.txt |
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231 | |
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232 | for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do |
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233 | echo -e "\n\n################################" ; |
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234 | echo -e "$file\n" ; cat $file ; |
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235 | done > ${R_ATLAS}/OCE_V/allferretscript.txt |
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236 | |
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237 | for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do |
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238 | echo -e "\n\n################################" ; |
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239 | echo -e "$file\n" ; cat $file ; |
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240 | done > ${R_ATLAS}/OCE/allferretscript.txt |
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241 | |
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242 | for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do |
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243 | echo -e "\n\n################################" ; |
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244 | echo -e "$file\n" ; cat $file ; |
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245 | done > ${R_ATLAS}/ICE/allferretscript.txt |
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246 | |
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247 | # WHILE WAITING FOR A MORE GENERIC SOLUTION |
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248 | if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then |
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249 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ${RUN_DIR} ; |
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250 | atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ; |
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251 | for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do |
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252 | echo -e "\n\n################################" ; |
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253 | echo -e "$file\n" ; cat $file ; |
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254 | done > ${R_ATLAS}/ZNL/allferretscript.txt |
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255 | fi |
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256 | |
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257 | # Clear some files |
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258 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
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259 | |
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260 | # Save files |
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261 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
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262 | |
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263 | IGCM_sys_Rm -Rf ATLAS |
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264 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc |
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265 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc |
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266 | # WHILE WAITING FOR A MORE GENERIC SOLUTION |
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267 | if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then |
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268 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ; |
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269 | fi |
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270 | |
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271 | # DODS copy |
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272 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
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273 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
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274 | |
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275 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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276 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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