source: trunk/libIGCM/AA_atlas_ORCA_LIM @ 426

Last change on this file since 426 was 426, checked in by mmaipsl, 13 years ago

Add login shell path for platine jobs.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.6 KB
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1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_OPA        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ##################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ##################
15#-Q- platine #BSUB -J ATL_OPA           # Nom du job
16#-Q- platine #BSUB -N                   # message a la fin du job
17#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 1:00              # Limite temps
19#-Q- platine #BSUB -q post              # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = ATL_OPA
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 10:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = ATL_OPA
45#-Q- aix6 # Fichier de sortie standard du travail       
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   ULAM   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 10:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = ATL_OPA
61#-Q- ulam # Fichier de sortie standard du travail       
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure #########################
81#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
82#-Q- sx9mercure #########################
83#-Q- sx9mercure #MSUB -r ATL_OPA        # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r ATL_OPA        # Nom du job               
94#-Q- titane #MSUB -N 1              # Reservation du noeud
95#-Q- titane #MSUB -n 1              # Reservation du processus
96#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
97#-Q- titane #MSUB -E "-j o"
98#-Q- titane #MSUB -E "-S /bin/ksh"
99#-Q- titane ##MSUB -e nco.out        # Sortie standard
100#-Q- titane ##MSUB -o nco.out        # Sortie standard
101#-Q- default #!/bin/ksh
102#-Q- default ##################
103#-Q- default ## DEFAULT HOST ##
104#-Q- default ##################
105
106#**************************************************************
107# Author: Sebastien Denvil
108# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
109# $Revision::                                          $ Revision of last commit
110# $Author::                                            $ Author of last commit
111# $Date::                                              $ Date of last commit
112# IPSL (2006)
113#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
114#
115#**************************************************************
116
117#set -eu
118#set -vx
119
120date
121
122#-Q- sx8brodie export OMP_NUM_THREADS=1
123#-Q- aix6 export OMP_NUM_THREADS=1
124#-Q- ulam export OMP_NUM_THREADS=1
125
126########################################################################
127
128. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
129      ( ${DEBUG_debug} ) && IGCM_debug_Check
130. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
131     ( ${DEBUG_debug} ) && IGCM_card_Check
132. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
133     ( ${DEBUG_debug} ) && IGCM_date_Check
134#-------
135. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
136
137########################################################################
138
139#set -vx
140
141IGCM_sys_MkdirWork ${RUN_DIR_PATH}
142IGCM_sys_Cd ${RUN_DIR_PATH}
143
144if [ ${StandAlone} = true ] ; then
145    CARD_DIR=${SUBMIT_DIR}
146else
147    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
148    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
149fi
150#
151# First of all
152#
153IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
154typeset option
155for option in ${config_UserChoices[*]} ; do
156    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
157done
158#
159echo
160IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
161IGCM_debug_PrintVariables 3 config_UserChoices_JobName
162IGCM_debug_PrintVariables 3 config_UserChoices_LongName
163IGCM_debug_PrintVariables 3 config_UserChoices_TagName
164IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
165IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
166IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
167IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
168IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
169IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
170echo
171
172#==================================
173#R_SAVE : Job output directory
174if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
175    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
176    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
177    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
178else
179    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
180    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
181fi
182#
183
184R_ATLAS=ATLAS/SE_${YEARS}
185R_OUT_OCE=${R_SAVE}/OCE
186R_OUT_ICE=${R_SAVE}/ICE
187DIR_OUT=${DIR_OUT:=SE}
188
189RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
190IGCM_sys_MkdirWork ${RUN_DIR}
191IGCM_sys_Cd ${RUN_DIR}
192
193# --------------------------------------------
194# Insert your commands between III...III lines
195# and precise produced directories to save
196# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
197
198IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
199IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
200IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
201IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
202IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
203
204atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[ab].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
205atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
206atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
207#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
208atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[def].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
209atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
210
211# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
212
213# Put ferret journal files together
214for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do 
215    echo -e "\n\n################################" ;
216    echo -e "$file\n" ; cat $file ;
217done  > ${R_ATLAS}/OCE_T/allferretscript.txt
218
219for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do 
220    echo -e "\n\n################################" ;
221    echo -e "$file\n" ; cat $file ;
222done  > ${R_ATLAS}/OCE_U/allferretscript.txt
223
224for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do 
225    echo -e "\n\n################################" ;
226    echo -e "$file\n" ; cat $file ;
227done  > ${R_ATLAS}/OCE_V/allferretscript.txt
228
229for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do 
230    echo -e "\n\n################################" ;
231    echo -e "$file\n" ; cat $file ;
232done  > ${R_ATLAS}/OCE/allferretscript.txt
233
234for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do 
235    echo -e "\n\n################################" ;
236    echo -e "$file\n" ; cat $file ;
237done  > ${R_ATLAS}/ICE/allferretscript.txt
238
239# WHILE WAITING FOR A MORE GENERIC SOLUTION
240if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
241    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
242    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
243    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
244        echo -e "\n\n################################" ;
245        echo -e "$file\n" ; cat $file ;
246    done > ${R_ATLAS}/ZNL/allferretscript.txt
247fi
248
249# Clear some files
250find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
251
252# Save files
253IGCM_sys_Put_Dir ATLAS ${R_SAVE}
254
255IGCM_sys_Rm -Rf ATLAS
256IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
257IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc     
258# WHILE WAITING FOR A MORE GENERIC SOLUTION
259if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
260    IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
261fi
262
263# DODS copy
264IGCM_sys_TestDirArchive ${R_SAVE}/${R_ATLAS}
265[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
266
267# Clean RUN_DIR_PATH (necessary for cesium)
268IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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