1 | #-Q- curie ###################### |
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2 | #-Q- curie ## CURIE TGCC/CEA ## |
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3 | #-Q- curie ###################### |
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4 | #-Q- curie #MSUB -r ATL_LMDZ # Nom du job |
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5 | #-Q- curie #MSUB -o ATL_LMDZ.out_%I |
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6 | #-Q- curie #MSUB -e ATL_LMDZ.out_%I |
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7 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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8 | #-Q- curie #MSUB -T 7200 # Limite de temps elapsed du job |
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9 | #-Q- curie #MSUB -q ::default_node:: |
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10 | #-Q- curie #MSUB -c ::default_core:: |
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11 | #-Q- curie #MSUB -Q normal |
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12 | #-Q- curie #MSUB -A ::default_project:: |
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13 | #-Q- curie set +x |
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14 | #-Q- irene ###################### |
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15 | #-Q- irene ## IRENE TGCC/CEA ## |
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16 | #-Q- irene ###################### |
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17 | #-Q- irene #MSUB -r ATL_LMDZ # Job name |
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18 | #-Q- irene #MSUB -o ATL_LMDZ.out_%I |
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19 | #-Q- irene #MSUB -e ATL_LMDZ.out_%I |
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20 | #-Q- irene #MSUB -n 1 |
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21 | #-Q- irene #MSUB -T 7200 # Maximum elapsed time |
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22 | #-Q- irene #MSUB -q ::default_node:: |
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23 | #-Q- irene #MSUB -c ::default_core:: |
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24 | #-Q- irene #MSUB -Q normal |
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25 | #-Q- irene #MSUB -A ::default_post_project:: |
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26 | #-Q- irene #MSUB -m store,work,scratch |
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27 | #-Q- irene set +x |
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28 | #-Q- ada #!/bin/ksh |
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29 | #-Q- ada ####################### |
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30 | #-Q- ada ## ADA IDRIS ## |
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31 | #-Q- ada ####################### |
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32 | #-Q- ada # @ job_type = mpich |
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33 | #-Q- ada # @ requirements = (Feature == "prepost") |
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34 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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35 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
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36 | #-Q- ada # Nom du travail LoadLeveler |
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37 | #-Q- ada # @ job_name = ATL_LMDZ |
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38 | #-Q- ada # Fichier de sortie standard du travail |
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39 | #-Q- ada # @ output = $(job_name).$(jobid) |
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40 | #-Q- ada # Fichier de sortie d'erreur du travail |
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41 | #-Q- ada # @ error = $(job_name).$(jobid) |
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42 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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43 | #-Q- ada # @ notification = error |
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44 | #-Q- ada # @ environment = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit) |
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45 | #-Q- ada # @ queue |
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46 | #-Q- lxiv8 ###################### |
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47 | #-Q- lxiv8 ## OBELIX LSCE ## |
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48 | #-Q- lxiv8 ###################### |
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49 | #-Q- lxiv8 #PBS -N ATL_LMDZ |
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50 | #-Q- lxiv8 #PBS -m a |
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51 | #-Q- lxiv8 #PBS -j oe |
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52 | #-Q- lxiv8 #PBS -q test |
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53 | #-Q- lxiv8 #PBS -o ATL_LMDZ.$$ |
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54 | #-Q- lxiv8 #PBS -S /bin/ksh |
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55 | #-Q- ifort_CICLAD ###################### |
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56 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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57 | #-Q- ifort_CICLAD ###################### |
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58 | #-Q- ifort_CICLAD #PBS -N ATL_LMDZ |
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59 | #-Q- ifort_CICLAD #PBS -m a |
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60 | #-Q- ifort_CICLAD #PBS -j oe |
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61 | #-Q- ifort_CICLAD #PBS -q std |
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62 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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63 | #-Q- default #!/bin/ksh |
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64 | #-Q- default ################## |
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65 | #-Q- default ## DEFAULT HOST ## |
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66 | #-Q- default ################## |
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67 | |
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68 | #************************************************************** |
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69 | # Author: Sebastien Denvil |
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70 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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71 | # $Revision:: $ Revision of last commit |
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72 | # $Author:: $ Author of last commit |
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73 | # $Date:: $ Date of last commit |
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74 | # IPSL (2006) |
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75 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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76 | # |
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77 | #************************************************************** |
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78 | |
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79 | #set -eu |
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80 | #set -vx |
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81 | |
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82 | date |
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83 | |
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84 | #-Q- ada export OMP_NUM_THREADS=1 |
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85 | |
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86 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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87 | TaskType=post-processing |
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88 | |
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89 | ###################################################################### |
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90 | |
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91 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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92 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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93 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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94 | #------- |
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95 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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96 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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97 | #------- |
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98 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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99 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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100 | #------- |
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101 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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102 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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103 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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104 | |
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105 | ###################################################################### |
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106 | |
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107 | #set -vx |
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108 | |
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109 | # ------------------------------------------------------------------ |
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110 | # Test if all was right before proceeding further |
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111 | # ------------------------------------------------------------------ |
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112 | IGCM_debug_Verif_Exit |
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113 | |
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114 | if [ ${StandAlone} = true ] ; then |
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115 | CARD_DIR=${SUBMIT_DIR} |
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116 | else |
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117 | CARD_DIR=${RUN_DIR_PATH} |
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118 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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119 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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120 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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121 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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122 | fi |
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123 | |
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124 | #================================== |
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125 | # First of all |
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126 | # |
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127 | # Read libIGCM compatibility version in config.card |
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128 | # Read UserChoices section |
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129 | # Read Ensemble section |
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130 | # Read Post section |
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131 | # Define all netcdf output directories |
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132 | #================================== |
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133 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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134 | |
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135 | # ------------------------------------------------------------------ |
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136 | # Activate BigBrother so as to supervise this job |
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137 | # ------------------------------------------------------------------ |
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138 | IGCM_debug_BigBro_Initialize |
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139 | |
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140 | #================================== |
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141 | # Then set up several directories |
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142 | #================================== |
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143 | R_ATLAS=ATLAS/SE_${YEARS} |
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144 | R_OUT_ATM=${R_SAVE}/ATM |
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145 | DIR_OUT=${DIR_OUT:=SE} |
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146 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_LMDZ_${YEARS} |
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147 | IGCM_sys_MkdirArchive ${R_FIGR} |
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148 | IGCM_sys_MkdirWork ${RUN_DIR} |
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149 | IGCM_sys_Cd ${RUN_DIR} |
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150 | |
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151 | # -------------------------------------------- |
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152 | # Insert your commands between III...III lines |
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153 | # and precise produced directories to save |
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154 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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155 | |
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156 | IGCM_sys_Get ${R_OUT_ATM}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc ${RUN_DIR} |
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157 | |
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158 | # Only LMDZ4 output have Alt variables |
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159 | DetectLev=$( ncdump -h ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc | grep "Alt(Alt)" | wc -l ) |
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160 | [ ${DetectLev} = 1 ] && LMDZ=LMDZ4 || LMDZ=LMDZ3.3 |
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161 | |
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162 | # Which atlas configuration source are we using? |
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163 | ls ${CARD_DIR}/POST/atlas_p_${LMDZ}_diag1_*.cfg 2>/dev/null 1>&2 |
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164 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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165 | IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/ATM -l ${PATH_ATLAS}/atlas_p_${LMDZ}_diag1_*.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc |
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166 | |
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167 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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168 | |
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169 | # Put ferret journal files together |
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170 | for file in $( ls ${R_ATLAS}/ATM/*/*jnl ) ; do |
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171 | echo -e "\n\n################################" ; |
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172 | echo -e "$file\n" ; cat $file ; |
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173 | done > ${R_ATLAS}/ATM/allferretscript.txt |
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174 | |
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175 | # Clear some files |
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176 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
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177 | |
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178 | # Save files |
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179 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
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180 | IGCM_sys_Rm -Rf ATLAS |
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181 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc |
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182 | |
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183 | # DODS copy |
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184 | if [ X${config_Post_DodsCopy} = XTRUE ] ; then |
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185 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
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186 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
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187 | fi |
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188 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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189 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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190 | |
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191 | # ------------------------------------------------------------------ |
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192 | # Finalize BigBrother to inform that the jobs end |
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193 | # ------------------------------------------------------------------ |
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194 | IGCM_debug_BigBro_Finalize |
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