[385] | 1 | #!/bin/ksh |
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[271] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil |
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[396] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[271] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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[1283] | 13 | # ID of your genci project. Curie only : post-processing jobs need it to run properly |
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| 14 | #-Q- curie export BRIDGE_MSUB_PROJECT=::default_project:: |
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[1437] | 15 | #-Q- irene export BRIDGE_MSUB_PROJECT=::default_project:: |
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[1525] | 16 | #-Q- irene-amd export BRIDGE_MSUB_PROJECT=::default_project:: |
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[271] | 17 | |
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[1356] | 18 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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[1114] | 19 | TaskType=checking |
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[712] | 20 | |
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[1114] | 21 | #D- Low level debug : to perform lib test checks, stack construction and IO functions instrumentation |
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| 22 | DEBUG_debug=false |
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| 23 | |
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| 24 | #D- Messaging : all activities and call stacks will be sent to ipsl servers |
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| 25 | BigBrother=false |
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| 26 | |
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[387] | 27 | # Check that everything went well during seasonal average production |
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[271] | 28 | # Display a short report |
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[1028] | 29 | # Launch what's missing when a simulation has been completed PeriodState=Completed |
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[271] | 30 | |
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[554] | 31 | #D- Path to libIGCM |
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| 32 | #D- Default : value from AA_job if any |
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| 33 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
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| 34 | # WARNING you must check MirrorlibIGCM variable in sys library. |
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| 35 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
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| 36 | # WARNING of your running libIGCM directory. |
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[271] | 37 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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| 38 | |
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[1450] | 39 | # Current directory |
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[271] | 40 | CURRENT_DIR=$( pwd ) |
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| 41 | |
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[1450] | 42 | # Directory with comp.cards |
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[1283] | 43 | CARD_DIR=${CARD_DIR:=${CURRENT_DIR}} |
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[271] | 44 | |
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[1450] | 45 | # Directory for script output |
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[338] | 46 | POST_DIR=${POST_DIR:=${CARD_DIR}/OutScript} |
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| 47 | |
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[271] | 48 | if [ ! -d ${CARD_DIR} ]; then |
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[785] | 49 | echo "No ${CARD_DIR}, we stop here" |
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| 50 | exit |
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[271] | 51 | fi |
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| 52 | |
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| 53 | ######################################################################## |
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| 54 | |
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[731] | 55 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 56 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 57 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 58 | #------- |
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| 59 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 60 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[832] | 61 | #------- |
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| 62 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 63 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 64 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[271] | 65 | |
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| 66 | ######################################################################## |
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| 67 | |
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[362] | 68 | #set -vx |
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| 69 | |
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[1327] | 70 | echo "Hi I'm here to help you check and complete the seasonal average production" |
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| 71 | echo -e "\033[1;31mDo you want me to run in dryrun mode just telling what I would submit? Answer no in this case\033[m" |
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| 72 | echo -e "\033[1;31mOr do you want me to submit job for real? Answer yes in this case.\033[m" |
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| 73 | echo -n " Run for real (y/n) :" |
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| 74 | read ActionAnswer |
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| 75 | |
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| 76 | case ${ActionAnswer} in |
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| 77 | oui|OUI|o|y|yes|YES) |
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| 78 | echo "OK. I will submit jobs" |
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| 79 | action=true |
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| 80 | ;; |
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| 81 | non|NON|n|no|NO) |
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| 82 | echo "OK. I won't submit any jobs" |
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| 83 | action=false |
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| 84 | ;; |
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| 85 | *) |
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| 86 | echo "I did not recognize your answer. I will stop here." |
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| 87 | echo "Please answer: oui|OUI|o|y|yes|YES" |
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| 88 | echo "Or answer: non|NON|n|no|NO" |
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| 89 | exit |
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| 90 | ;; |
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| 91 | esac |
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| 92 | |
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[616] | 93 | #================================== |
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[271] | 94 | # First of all |
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[616] | 95 | # |
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[727] | 96 | # Read libIGCM compatibility version in config.card |
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| 97 | # Read UserChoices section |
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| 98 | # Read Ensemble section |
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| 99 | # Read Post section |
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| 100 | # Define all netcdf output directories |
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[616] | 101 | #================================== |
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[727] | 102 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[271] | 103 | |
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[616] | 104 | #================================== |
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[727] | 105 | # Read ListOfComponents section: |
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| 106 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[658] | 107 | |
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| 108 | #================================== |
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[727] | 109 | # Read SeasonalFrequency: |
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| 110 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
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[338] | 111 | |
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[1450] | 112 | #=================================== |
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| 113 | # Read DateBegin from config.card |
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[908] | 114 | DateBegin=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} ) |
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[338] | 115 | |
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[1450] | 116 | #=================================== |
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| 117 | # Read end date from run.card or config.card |
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| 118 | if [ -f ${CARD_DIR}/run.card ] ; then |
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| 119 | # Read updated run.card : |
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| 120 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/run.card Configuration PeriodDateBegin |
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| 121 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/run.card Configuration PeriodState |
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| 122 | |
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| 123 | if [ X${run_Configuration_PeriodState} != X"Completed" ] ; then |
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| 124 | # Calculate DateEnd by read PeriodDateBegin from run.card and remove one day |
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| 125 | DateEnd=$( IGCM_date_AddDaysToGregorianDate $( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} ) -1 ) |
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| 126 | else |
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| 127 | # Simulation is finished, read DateEnd from config.card |
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| 128 | DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} ) |
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| 129 | fi |
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| 130 | else |
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| 131 | # No run.card available, read DateEnd from config.card |
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| 132 | DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} ) |
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| 133 | fi |
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| 134 | |
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| 135 | #=================================== |
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| 136 | # Calculate offset |
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[908] | 137 | if ( [ X${config_Post_SeasonalFrequencyOffset} = X${NULL_STR} ] || [ X${config_Post_SeasonalFrequencyOffset} = XNONE ] || [ X${config_Post_SeasonalFrequencyOffset} = X ] ) ; then |
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| 138 | PeriodOffset=0 |
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| 139 | else |
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| 140 | PeriodOffset=${config_Post_SeasonalFrequencyOffset} |
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| 141 | fi |
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[362] | 142 | |
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[385] | 143 | IGCM_debug_Print 1 "DateBegin for SE_Checker : "${DateBegin} |
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| 144 | IGCM_debug_Print 1 "DateEnd for SE_Checker : "${DateEnd} |
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[908] | 145 | IGCM_debug_Print 1 "Offset for SE_Checker : "${PeriodOffset} |
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[362] | 146 | echo |
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[385] | 147 | # |
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| 148 | [ X${config_Post_SeasonalFrequency} = X"NONE" ] && exit |
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[271] | 149 | |
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[385] | 150 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
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[271] | 151 | |
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[908] | 152 | an_deb=$( IGCM_date_YearDigit $(( DateBegin / 10000 + PeriodOffset )) ) |
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| 153 | an_fin=$( IGCM_date_YearDigit $(( an_deb + freq - 1 )) ) |
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[385] | 154 | an_fin_all=$( IGCM_date_YearDigit $(( DateEnd / 10000 )) ) |
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| 155 | |
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| 156 | # |
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| 157 | while [ ${an_fin} -le ${an_fin_all} ] ; do |
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| 158 | |
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[785] | 159 | countTotal=0 |
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| 160 | countGood=0 |
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| 161 | countBad=0 |
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[385] | 162 | |
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[785] | 163 | IGCM_debug_Print 1 " DateBegin/End for SE : ${an_deb}_${an_fin} " |
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[271] | 164 | |
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[785] | 165 | for comp in ${config_ListOfComponents[*]} ; do |
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| 166 | localcountBad=0 |
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| 167 | # Debug Print |
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| 168 | IGCM_debug_Print 1 ${comp} |
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[906] | 169 | # Define component |
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[785] | 170 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 171 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 172 | |
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| 173 | # Read libIGCM compatibility version in ${compname}.card |
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| 174 | card=${CARD_DIR}/COMP/${compname}.card |
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| 175 | |
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| 176 | # Read and Build Output File stuff |
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| 177 | #IGCM_debug_Print 1 "DefineArrayFromOption : ${compname}_OutputFiles ${card}" |
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| 178 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 179 | ListFilesName=${compname}_OutputFiles_List |
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| 180 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 181 | # |
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| 182 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 183 | # |
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| 184 | # INITIALISATION |
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| 185 | # |
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| 186 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 187 | typeset i=2 |
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| 188 | # |
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| 189 | until [ $i -gt $NbFiles ]; do |
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| 190 | # |
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| 191 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 192 | # |
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| 193 | if [ X${flag_post} != XNONE ] ; then |
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| 194 | # |
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| 195 | # Check if seasonal is required for this file |
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| 196 | # |
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| 197 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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| 198 | # |
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| 199 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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| 200 | # |
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| 201 | # variable option allready typeset above |
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| 202 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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| 203 | if [ ${option} = Seasonal ] ; then |
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| 204 | FoundSeasonal=true |
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| 205 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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| 206 | fi |
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| 207 | done |
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| 208 | # |
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| 209 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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| 210 | eval ${compname}_${flag_post}_Seasonal=ON |
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| 211 | fi |
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| 212 | # |
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| 213 | if [ ! X$( eval echo \${${compname}_${flag_post}_Seasonal} ) = XON ] ; then |
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| 214 | (( i=i+3 )) |
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| 215 | continue |
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| 216 | fi |
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| 217 | # |
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| 218 | # CREATE LIST |
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| 219 | # |
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| 220 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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| 221 | # |
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| 222 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
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| 223 | # |
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| 224 | TestedFile=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${FILE}.nc |
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| 225 | # |
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| 226 | (( countTotal = countTotal + 1 )) |
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[906] | 227 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} >/dev/null 2>&1 |
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[785] | 228 | if [ ! $? = 0 ] ; then |
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| 229 | eval set +A LISTE_FILE_${comp}_${an_deb} \$\{LISTE_FILE_${comp}_${an_deb}[*]} ${TestedFile} |
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| 230 | (( countBad = countBad + 1 )) |
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| 231 | (( localcountBad = localcountBad + 1 )) |
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| 232 | else |
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| 233 | (( countGood = countGood + 1 )) |
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| 234 | fi |
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| 235 | fi |
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| 236 | (( i=i+3 )) # to explore file list |
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| 237 | done # until [ $i -eq $NbFiles ] |
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[906] | 238 | fi # [ X${FileName0} != X${NULL_STR} ] |
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[785] | 239 | |
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| 240 | [ $localcountBad = 0 ] || IGCM_debug_Print 1 "$localcountBad file(s) missing for ${comp} : " $( eval echo \${LISTE_FILE_${comp}_${an_deb}[*]} ) |
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| 241 | done |
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| 242 | |
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| 243 | # create_se submit if files don't exist |
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| 244 | if [ $countGood != $countTotal ] ; then |
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[1327] | 245 | if [ ${action} = true ] ; then |
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[785] | 246 | |
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[1327] | 247 | IGCM_debug_Print 2 -e "\033[1;31mSubmit create_se \033[m for period ${an_deb}-${an_fin}" |
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| 248 | |
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| 249 | listVarEnv="DEBUG_debug,BigBrother,libIGCM,SUBMIT_DIR,POST_DIR,Script_Post_Output,DateBegin,PeriodDateEnd,RebuildFrequency,RESOL_ATM,RESOL_SRF,RESOL_SBG,RESOL_OCE,RESOL_ICE,RESOL_MBG" |
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| 250 | export DEBUG_debug=${DEBUG_debug} |
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| 251 | export BigBrother=${BigBrother} |
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| 252 | export libIGCM=${libIGCM} |
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| 253 | export SUBMIT_DIR=${CARD_DIR} |
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| 254 | export POST_DIR=${POST_DIR} |
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| 255 | export DateBegin=${an_deb} |
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| 256 | export PeriodDateEnd=${an_fin}1231 |
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| 257 | export RebuildFrequency=${RebuildFrequency} |
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| 258 | export RESOL_ATM=${RESOL_ATM} |
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| 259 | export RESOL_SRF=${RESOL_SRF} |
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| 260 | export RESOL_SBG=${RESOL_SBG} |
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| 261 | export RESOL_OCE=${RESOL_OCE} |
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| 262 | export RESOL_ICE=${RESOL_ICE} |
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| 263 | export RESOL_MBG=${RESOL_MBG} |
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| 264 | export listVarEnv=${listVarEnv} |
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| 265 | export Script_Post_Output=create_se.${PeriodDateEnd} |
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| 266 | |
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| 267 | IGCM_sys_MkdirWork ${POST_DIR} |
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| 268 | IGCM_debug_Verif_Exit |
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| 269 | IGCM_sys_QsubPost create_se |
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| 270 | echo |
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| 271 | else |
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| 272 | # only dry run |
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| 273 | IGCM_debug_Print 2 -e "\033[1;31mI should NOW Submit create_se \033[m for period ${an_deb}-${an_fin}" |
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| 274 | echo |
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| 275 | fi |
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| 276 | else |
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| 277 | IGCM_debug_Print 2 -e "\033[1;32mFiles are OK for period ${an_deb}-${an_fin}.\033[m Nothing needs to be done for this period." |
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| 278 | echo |
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[785] | 279 | fi |
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| 280 | |
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| 281 | (( an_deb = an_deb + freq )) |
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| 282 | (( an_fin = an_fin + freq )) |
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| 283 | |
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[385] | 284 | done # while |
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