[771] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sébastien Denvil |
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| 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Ada |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[771] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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[1179] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[771] | 67 | # $username ou whoami |
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[1179] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[771] | 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=ada |
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[1201] | 71 | # project name |
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| 72 | typeset PROJECT=$(echo ${LOADL_STEP_GROUP:=NONE}) |
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| 73 | # jobWarningDelay in seconds |
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[1236] | 74 | typeset jobWarningDelay=$( TZ=utc date -d '1970-01-01 '${wall_clock_limit} +%s ) |
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[771] | 75 | |
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| 76 | #D- |
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| 77 | #D-#================================================== |
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| 78 | #D-Program used in libIGCM |
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| 79 | #D-#================================================== |
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| 80 | |
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| 81 | # Submit command |
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| 82 | typeset SUBMIT=${SUBMIT:=llsubmit} |
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| 83 | # rsync with path |
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| 84 | typeset -r RSYNC=/usr/bin/rsync |
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| 85 | # RSYNC_opt args to rsync |
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| 86 | typeset -r RSYNC_opt="-va" |
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| 87 | # ie storage filesystem |
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[1012] | 88 | typeset -r STOREHOST=ergon |
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[1180] | 89 | typeset -r REMOTE_RSYNC=/usr/bin/rsync |
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[771] | 90 | |
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| 91 | #==================================================== |
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[1180] | 92 | # Set environment tools (ferret, nco, cdo, rebuild, ...) |
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[771] | 93 | #==================================================== |
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[993] | 94 | source /smplocal/pub/Modules/default/init/ksh |
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[1305] | 95 | if ( [ "X${LOADL_STEP_TYPE}" = "XPARALLEL" ] || [ "X${LOADL_STEP_TYPE}" = "XSERIAL" ] ) ; then |
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[1358] | 96 | module load python/2.7.10 > /dev/null 2>&1 |
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[1305] | 97 | . /smphome/rech/psl/rpsl035/.atlas_env_ada_intel_2013_0_bash > /dev/null 2>&1 |
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| 98 | else |
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[1362] | 99 | module load python/2.7.10 > /dev/null 2>&1 |
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| 100 | module unload intel > /dev/null 2>&1 |
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[1305] | 101 | module load intel/2016.2 > /dev/null 2>&1 |
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| 102 | . /smphome/rech/psl/rpsl035/.atlas_env_ada_bash > /dev/null 2>&1 |
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[1358] | 103 | export PCMDI_MP=/workgpfs/rech/psl/rpsl035/PCMDI-MP |
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[1308] | 104 | export UVCDAT_ANONYMOUS_LOG=no |
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[1305] | 105 | fi |
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[1210] | 106 | [ ! X${TaskType} = Xchecking ] && IGCM_debug_Print 1 "List of loaded modules:" |
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| 107 | [ ! X${TaskType} = Xchecking ] && module list |
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[1208] | 108 | |
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[993] | 109 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddNoise/src_X64_ADA/bin |
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[1026] | 110 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/AddPerturbation/src_X64_ADA/bin |
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[1179] | 111 | export PATH=${PATH}:/smphome/rech/psl/rpsl035/bin/ |
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[771] | 112 | |
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| 113 | #==================================================== |
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| 114 | # Host specific DIRECTORIES |
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| 115 | #==================================================== |
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| 116 | |
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| 117 | #==================================================== |
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| 118 | #- MirrorlibIGCM for frontend |
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| 119 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 120 | |
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| 121 | #==================================================== |
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| 122 | #- libIGCM_POST for frontend |
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| 123 | typeset -r libIGCM_POST=${libIGCM} |
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| 124 | |
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| 125 | #==================================================== |
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| 126 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 127 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 128 | |
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| 129 | #==================================================== |
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| 130 | #- SUBMIT_DIR : submission dir |
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[1012] | 131 | typeset -x SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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[771] | 132 | |
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| 133 | #==================================================== |
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| 134 | #- IN |
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| 135 | typeset -r R_IN=${R_IN:=/workgpfs/rech/psl/rpsl035/IGCM} |
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| 136 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/u/rech/psl/rpsl376} |
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| 137 | |
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| 138 | #==================================================== |
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| 139 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 140 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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| 141 | |
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| 142 | #==================================================== |
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[1179] | 143 | #- OUTCOMMAND_PATH : tmp place to store command lines standard error and outputs |
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[1186] | 144 | typeset -r OUTCOMMAND_PATH=${RUN_DIR_PATH:-/tmp} |
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[1179] | 145 | |
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| 146 | #==================================================== |
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[771] | 147 | #- HOST_MPIRUN_COMMAND |
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[1305] | 148 | if ( [ "X${LOADL_STEP_TYPE}" = "XPARALLEL" ] || [ "X${LOADL_STEP_TYPE}" = "XSERIAL" ] ) ; then |
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| 149 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time poe"} |
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| 150 | else |
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| 151 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time mpirun"} |
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| 152 | fi |
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[771] | 153 | #==================================================== |
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| 154 | #- Max number of arguments passed to nco operator or demigration command |
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| 155 | UNIX_MAX_LIMIT=360 |
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| 156 | |
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| 157 | #==================================================== |
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[1180] | 158 | #- set PackDefault to true on ada |
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[771] | 159 | PackDefault=true |
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| 160 | |
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| 161 | #==================================================== |
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[1305] | 162 | #- Number of cores per node |
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| 163 | core_per_node=32 |
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| 164 | |
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| 165 | #==================================================== |
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[771] | 166 | #- Default number of MPI task for IPSL coupled model |
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| 167 | #- required for backward compatibility |
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| 168 | #- |
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| 169 | DEFAULT_NUM_PROC_OCE=5 |
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| 170 | DEFAULT_NUM_PROC_CPL=1 |
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| 171 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 172 | |
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| 173 | #D-#================================================== |
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[1057] | 174 | #D-function IGCM_sys_defineArchives |
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| 175 | #D-* Purpose: |
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| 176 | #D-* Define ARCHIVE : Dedicated to large files |
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| 177 | #D-* Define STORAGE : Dedicated to small/medium files |
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| 178 | #D-* Define R_OUT : Output tree located on ARCHIVE |
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| 179 | #D-* Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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| 180 | #D-* Define R_BUF : Output tree located on SCRATCHDIR hosting files waiting for rebuild or pack processes |
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| 181 | #D-* if SpaceName=TEST everything is stored on WORKDIR |
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[771] | 182 | #D-* Examples: |
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| 183 | #D- |
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[1057] | 184 | function IGCM_sys_defineArchives { |
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| 185 | IGCM_debug_PushStack "IGCM_sys_defineArchives" |
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[771] | 186 | |
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[1060] | 187 | if [ ! X${config_UserChoices_ARCHIVE} = X ]; then |
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[1057] | 188 | #==================================================== |
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| 189 | #- ARCHIVE (dedicated to large files) |
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[1063] | 190 | ARCHIVE=${config_UserChoices_ARCHIVE} |
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[1057] | 191 | else |
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| 192 | #==================================================== |
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| 193 | #- ARCHIVE (dedicated to large files) |
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[1063] | 194 | ARCHIVE=$(echo ${HOME} | sed -e "s,/.*home/,/arch/home/,") |
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[1057] | 195 | fi |
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[771] | 196 | |
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[1060] | 197 | if [ ! X${config_UserChoices_STORAGE} = X ]; then |
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[1057] | 198 | #==================================================== |
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| 199 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 200 | STORAGE=${config_UserChoices_STORAGE} |
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[1057] | 201 | else |
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| 202 | #==================================================== |
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| 203 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 204 | STORAGE=${WORKDIR} |
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[1057] | 205 | fi |
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[771] | 206 | |
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[1057] | 207 | if [ X${config_UserChoices_SpaceName} = XTEST ]; then |
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| 208 | #==================================================== |
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| 209 | #- R_OUT |
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[1063] | 210 | R_OUT=${WORKDIR}/IGCM_OUT |
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[1057] | 211 | |
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| 212 | #==================================================== |
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| 213 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 214 | R_FIG=${WORKDIR}/IGCM_OUT |
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[1057] | 215 | |
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| 216 | IGCM_debug_Print 1 "SpaceName=TEST ==> OVERRULE destination path directories" |
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| 217 | |
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| 218 | else |
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| 219 | #==================================================== |
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| 220 | #- R_OUT |
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[1063] | 221 | R_OUT=${ARCHIVE}/IGCM_OUT |
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[1057] | 222 | |
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| 223 | #==================================================== |
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| 224 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 225 | R_FIG=${ARCHIVE}/IGCM_OUT |
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[1057] | 226 | fi |
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| 227 | |
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| 228 | #==================================================== |
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| 229 | #- R_BUF (ONLY FOR double copy an scratch) |
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[1063] | 230 | R_BUF=${WORKDIR}/IGCM_OUT |
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[1057] | 231 | |
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| 232 | IGCM_debug_Print 1 "R_OUT has been defined = ${R_OUT}" |
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| 233 | IGCM_debug_Print 1 "R_BUF has been defined = ${R_BUF}" |
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| 234 | IGCM_debug_Print 1 "R_FIG has been defined = ${R_FIG}" |
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| 235 | |
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| 236 | IGCM_debug_PopStack "IGCM_sys_defineArchives" |
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[771] | 237 | } |
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| 238 | |
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| 239 | #D-#================================================== |
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| 240 | #D-function IGCM_sys_RshArchive |
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| 241 | #D-* Purpose: Archive rsh command |
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| 242 | #D-* Examples: |
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| 243 | #D- |
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| 244 | function IGCM_sys_RshArchive { |
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| 245 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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[798] | 246 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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[1179] | 247 | if [ $? = 0 ] ; then |
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[798] | 248 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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[771] | 249 | ${@} |
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| 250 | EOF |
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[798] | 251 | status=$? |
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| 252 | else |
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| 253 | /bin/ksh <<-EOF |
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| 254 | ${@} |
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| 255 | EOF |
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| 256 | status=$? |
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| 257 | fi |
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| 258 | if [ ${status} -gt 0 ] ; then |
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| 259 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : rsh or command failed error code ${status}" |
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[771] | 260 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 261 | fi |
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| 262 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 263 | } |
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| 264 | |
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| 265 | #D-#================================================== |
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[845] | 266 | #D-function IGCM_sys_RshArchive_NoError |
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| 267 | #D-* Purpose: Archive rsh command, without error |
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| 268 | #D-* used only in monitoring.job |
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| 269 | #D-* Examples: |
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| 270 | #D- |
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| 271 | function IGCM_sys_RshArchive_NoError { |
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| 272 | IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@ |
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| 273 | DEBUG_sys=false IGCM_sys_IsFileArchived "$@" |
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| 274 | if [ $? = 0 ] ; then |
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| 275 | rsh ${STOREHOST} exec /bin/ksh <<-EOF |
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| 276 | ${@} 2> /dev/null |
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| 277 | EOF |
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| 278 | else |
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| 279 | /bin/ksh <<-EOF |
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| 280 | ${@} 2> /dev/null |
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| 281 | EOF |
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| 282 | fi |
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| 283 | IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError" |
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| 284 | } |
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| 285 | |
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| 286 | #D-#================================================== |
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[771] | 287 | #D-function IGCM_sys_MkdirArchive |
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| 288 | #D-* Purpose: Mkdir on Archive |
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| 289 | #D-* Examples: |
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| 290 | #D- |
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| 291 | function IGCM_sys_MkdirArchive { |
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| 292 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 293 | if ( $DEBUG_sys ) ; then |
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| 294 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 295 | fi |
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| 296 | #- creation de repertoire sur le serveur fichier |
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[798] | 297 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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[793] | 298 | if [ $? = 0 ] ; then |
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| 299 | rsh ${STOREHOST} -n mkdir -p $1 |
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[794] | 300 | status=$? |
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[793] | 301 | else |
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| 302 | mkdir -p $1 |
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[794] | 303 | status=$? |
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[922] | 304 | fi |
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[771] | 305 | |
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[794] | 306 | if [ ${status} -gt 0 ] ; then |
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| 307 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : rsh or mkdir failed error code ${status}" |
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[771] | 308 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 309 | fi |
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| 310 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 311 | } |
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| 312 | |
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| 313 | #D-#================================================== |
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| 314 | #D-function IGCM_sys_TestDirArchive |
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| 315 | #D-* Purpose: Test Directory that must exists on Archive |
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| 316 | #D-* Examples: |
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| 317 | #D- |
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| 318 | function IGCM_sys_TestDirArchive { |
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| 319 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 320 | if ( $DEBUG_sys ) ; then |
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| 321 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 322 | fi |
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[1027] | 323 | typeset ExistFlag |
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[796] | 324 | #Command depends on targeted file system |
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[798] | 325 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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[796] | 326 | if [ $? = 0 ] ; then |
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[1027] | 327 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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[796] | 328 | else |
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[1027] | 329 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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[796] | 330 | fi |
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[771] | 331 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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| 332 | return ${ExistFlag} |
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| 333 | } |
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| 334 | |
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| 335 | #D-#================================================== |
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| 336 | #D-function IGCM_sys_IsFileArchived |
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[1012] | 337 | #D-* Purpose: Test file that must NOT EXISTS on Archive based on filename only |
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[771] | 338 | #D-* Examples: |
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| 339 | #D- |
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| 340 | function IGCM_sys_IsFileArchived { |
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| 341 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
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| 342 | if ( $DEBUG_sys ) ; then |
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| 343 | echo "IGCM_sys_IsFileArchived :" $@ |
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| 344 | fi |
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| 345 | typeset IsArchivedFlag |
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[1171] | 346 | IsArchivedFlag=$( [ "X$( echo $@ | grep \/arch\/home )" != "X" ] && echo 0 || echo 1 ) |
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[771] | 347 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
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| 348 | |
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| 349 | return ${IsArchivedFlag} |
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| 350 | } |
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| 351 | |
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| 352 | #D-#================================================== |
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| 353 | #D-function IGCM_sys_TestFileArchive |
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| 354 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 355 | #D-* Examples: |
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| 356 | #D- |
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[1148] | 357 | function IGCM_sys_TestFileArchive { |
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| 358 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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[1179] | 359 | typeset ExistFlag |
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[1171] | 360 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
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[1148] | 361 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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| 362 | |
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| 363 | return ${ExistFlag} |
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| 364 | } |
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| 365 | |
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| 366 | #D-#================================================== |
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[1179] | 367 | #D-function IGCM_sys_CountFileArchive |
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| 368 | #D-* Purpose: Count files on Archive filesystem |
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| 369 | #D-* Examples: |
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| 370 | #D- |
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[1148] | 371 | function IGCM_sys_CountFileArchive { |
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| 372 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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| 373 | #Command depends on targeted file system |
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| 374 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
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| 375 | if [ $? = 0 ] ; then |
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| 376 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
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| 377 | status=$? |
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| 378 | else |
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| 379 | ls ${@} 2>/dev/null | wc -l |
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| 380 | status=$? |
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| 381 | fi |
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| 382 | if [ ${status} -gt 0 ] ; then |
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| 383 | echo "IGCM_sys_CountFileArchive : erreur." |
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| 384 | fi |
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| 385 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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| 386 | } |
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| 387 | |
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| 388 | #D-#================================================== |
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[771] | 389 | #D-function IGCM_sys_Tree |
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| 390 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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| 391 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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| 392 | #D- |
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| 393 | function IGCM_sys_Tree { |
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| 394 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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| 395 | if ( $DEBUG_sys ) ; then |
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| 396 | echo "IGCM_sys_Tree :" $@ |
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| 397 | fi |
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| 398 | |
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[1032] | 399 | \mfls -R $@ |
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[771] | 400 | |
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| 401 | IGCM_debug_PopStack "IGCM_sys_Tree" |
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| 402 | } |
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| 403 | |
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| 404 | #D-#================================================== |
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| 405 | #D-function IGCM_sys_Qsub |
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| 406 | #D-* Purpose: Qsub new job |
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| 407 | #D-* Examples: |
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| 408 | #D- |
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| 409 | function IGCM_sys_Qsub { |
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| 410 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
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| 411 | if ( $DEBUG_sys ) ; then |
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| 412 | echo "IGCM_sys_Qsub :" $@ |
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| 413 | fi |
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[1179] | 414 | typeset status |
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| 415 | |
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[771] | 416 | # We have to change output/error file |
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| 417 | [ ${#@} = 1 ] && REP_FOR_JOB=${SUBMIT_DIR} |
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| 418 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
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[774] | 419 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Output}:" \ |
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[1305] | 420 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Output}:" \ |
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| 421 | $1 > ${REP_FOR_JOB}/JOB_FOR_IGCM |
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[1179] | 422 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
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[771] | 423 | |
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[1179] | 424 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[811] | 425 | if [ ${status} -gt 0 ] ; then |
---|
| 426 | IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}" |
---|
[771] | 427 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 428 | else |
---|
[1179] | 429 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
---|
[771] | 430 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
| 431 | fi |
---|
| 432 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
| 433 | } |
---|
| 434 | |
---|
| 435 | #D-#================================================== |
---|
| 436 | #D-function IGCM_sys_QsubPost |
---|
| 437 | #D-* Purpose: Qsub new job on scalaire |
---|
| 438 | #D-* Examples: |
---|
| 439 | #D- |
---|
| 440 | function IGCM_sys_QsubPost { |
---|
| 441 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 442 | if ( $DEBUG_sys ) ; then |
---|
| 443 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 444 | fi |
---|
[1179] | 445 | typeset status |
---|
| 446 | |
---|
[771] | 447 | # We have to change output/error file |
---|
[784] | 448 | [ ${#@} = 1 ] && REP_FOR_JOB=${POST_DIR} |
---|
[771] | 449 | [ ${#@} = 2 ] && REP_FOR_JOB=${2} |
---|
| 450 | |
---|
[784] | 451 | sed -e "s:\# \@ output *= .*:\# \@ output = ${Script_Post_Output}.out:" \ |
---|
[1305] | 452 | -e "s:\# \@ error *= .*:\# \@ error = ${Script_Post_Output}.out:" \ |
---|
| 453 | ${libIGCM_POST}/$1.job > ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
[774] | 454 | |
---|
[1179] | 455 | cd $REP_FOR_JOB ; /usr/bin/llsubmit JOB_FOR_IGCM_$$ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 ; status=$? ; cd - ; |
---|
[948] | 456 | |
---|
[1179] | 457 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[811] | 458 | if [ ${status} -gt 0 ] ; then |
---|
| 459 | IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}" |
---|
[771] | 460 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 461 | else |
---|
[1179] | 462 | JobID=$( gawk {'print $4'} ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ | tail -1 | sed -e s/\"//g ) |
---|
[887] | 463 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM_$$ |
---|
[771] | 464 | fi |
---|
| 465 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 466 | } |
---|
| 467 | |
---|
| 468 | #D-************************* |
---|
| 469 | #D- File transfer functions |
---|
| 470 | #D-************************* |
---|
| 471 | #D- |
---|
| 472 | |
---|
| 473 | #D-#================================================== |
---|
| 474 | #D-function IGCM_sys_RmRunDir |
---|
| 475 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 476 | #D- scheduler will do the job) |
---|
| 477 | #D-* Examples: |
---|
| 478 | #D- |
---|
| 479 | function IGCM_sys_RmRunDir { |
---|
[1057] | 480 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" $@ |
---|
[771] | 481 | if ( $DEBUG_sys ) ; then |
---|
| 482 | echo "IGCM_sys_RmRunDir :" $@ |
---|
[1183] | 483 | IGCM_debug_Print 1 "Dummy call, let the scheduler do that." |
---|
[771] | 484 | fi |
---|
| 485 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
| 486 | } |
---|
| 487 | |
---|
| 488 | #D-#================================================== |
---|
| 489 | #D-function IGCM_sys_Put_Dir |
---|
| 490 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 491 | #D-* Examples: |
---|
| 492 | #D- |
---|
| 493 | function IGCM_sys_Put_Dir { |
---|
| 494 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 495 | if ( $DEBUG_sys ) ; then |
---|
| 496 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 497 | fi |
---|
| 498 | if [ $DRYRUN = 0 ]; then |
---|
| 499 | if [ ! -d ${1} ] ; then |
---|
| 500 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 501 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 502 | return |
---|
| 503 | fi |
---|
| 504 | |
---|
| 505 | typeset status |
---|
| 506 | |
---|
| 507 | # Only if we use rsync |
---|
| 508 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 509 | # |
---|
[792] | 510 | #Command depends on targeted file system |
---|
[798] | 511 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 512 | if [ $? = 0 ] ; then |
---|
[1179] | 513 | \rcp -r $1 ${STOREHOST}:$2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 514 | status=$? |
---|
| 515 | else |
---|
[1179] | 516 | \cp -r $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 517 | status=$? |
---|
| 518 | fi |
---|
[771] | 519 | |
---|
| 520 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 521 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : rcp or cp failed error code ${status}" |
---|
[1179] | 522 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 523 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
| 524 | else |
---|
[1179] | 525 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 526 | fi |
---|
| 527 | fi |
---|
| 528 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 529 | } |
---|
| 530 | |
---|
| 531 | #D-#================================================== |
---|
| 532 | #D-function IGCM_sys_Get_Dir |
---|
| 533 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
| 534 | #D-* Examples: |
---|
| 535 | #D- |
---|
| 536 | function IGCM_sys_Get_Dir { |
---|
| 537 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 538 | if ( $DEBUG_sys ) ; then |
---|
| 539 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 540 | fi |
---|
| 541 | if [ $DRYRUN = 0 ]; then |
---|
| 542 | typeset NB_ESSAI DELAI status i |
---|
| 543 | # number of tentative |
---|
| 544 | NB_ESSAI=3 |
---|
| 545 | # time delay between tentative |
---|
| 546 | DELAI=2 |
---|
| 547 | |
---|
| 548 | # Only if we use rsync |
---|
| 549 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 550 | # |
---|
[793] | 551 | # Command depends on targeted filesystem |
---|
[798] | 552 | DEBUG_sys=false IGCM_sys_IsFileArchived $1 |
---|
[793] | 553 | if [ $? = 0 ] ; then |
---|
| 554 | # add dmget (to demigrate all offline files) to reduce time of this command : |
---|
[1012] | 555 | #IGCM_sys_RshArchive "dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget -q -n" |
---|
[793] | 556 | i=0 |
---|
| 557 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1179] | 558 | \rcp -rp ${STOREHOST}:$1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[793] | 559 | status=$? |
---|
| 560 | if [ ${status} -gt 0 ]; then |
---|
| 561 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : rcp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 562 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 563 | sleep $DELAI |
---|
| 564 | else |
---|
| 565 | break |
---|
| 566 | fi |
---|
| 567 | (( i = i + 1 )) |
---|
| 568 | done |
---|
| 569 | else |
---|
[1179] | 570 | \cp -rp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 571 | status=$? |
---|
[793] | 572 | if [ ${status} -gt 0 ] ; then |
---|
| 573 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}" |
---|
[1179] | 574 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[793] | 575 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[771] | 576 | else |
---|
[1179] | 577 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 578 | fi |
---|
[793] | 579 | fi |
---|
[771] | 580 | if [ ${status} -gt 0 ] ; then |
---|
[1179] | 581 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : (r)cp failed error code ${status}" |
---|
| 582 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 583 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
| 584 | else |
---|
[1179] | 585 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 586 | fi |
---|
| 587 | fi |
---|
| 588 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 589 | } |
---|
| 590 | |
---|
| 591 | #D-#================================================== |
---|
| 592 | #D-function IGCM_sys_Put_Rest |
---|
| 593 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
| 594 | #D- File and target directory must exist. |
---|
| 595 | #D-* Examples: |
---|
| 596 | #D- |
---|
| 597 | function IGCM_sys_Put_Rest { |
---|
| 598 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 599 | if ( $DEBUG_sys ) ; then |
---|
| 600 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 601 | fi |
---|
| 602 | if [ $DRYRUN = 0 ]; then |
---|
| 603 | if [ ! -f ${1} ] ; then |
---|
| 604 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 605 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 606 | fi |
---|
| 607 | |
---|
| 608 | typeset status |
---|
| 609 | # |
---|
| 610 | if [ X${JobType} = XRUN ] ; then |
---|
| 611 | IGCM_sys_Chmod 444 ${1} |
---|
| 612 | fi |
---|
| 613 | # |
---|
| 614 | # |
---|
[792] | 615 | #Command depends on targeted file system |
---|
[798] | 616 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 617 | if [ $? = 0 ] ; then |
---|
[1179] | 618 | mfput $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 619 | status=$? |
---|
| 620 | else |
---|
[795] | 621 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 622 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 623 | status=$? |
---|
| 624 | fi |
---|
[771] | 625 | |
---|
| 626 | # #RSYNC WITH NETWORK RSH CALL |
---|
[795] | 627 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 628 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 629 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 630 | |
---|
| 631 | # #RSYNC WITH NFS USE |
---|
[1179] | 632 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 633 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 634 | |
---|
| 635 | # status=$? |
---|
| 636 | # IGCM_sys_Rsync_out $status |
---|
| 637 | |
---|
[1179] | 638 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 639 | # (( status=status+$? )) |
---|
| 640 | |
---|
| 641 | if [ ${status} -gt 0 ] ; then |
---|
[1179] | 642 | IGCM_debug_Print 2 "IGCM_sys_Put_Rest : mfput or cp failed error code ${status}" |
---|
| 643 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 644 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 645 | else |
---|
[1179] | 646 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 647 | fi |
---|
| 648 | fi |
---|
| 649 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 650 | } |
---|
| 651 | |
---|
| 652 | #D-#================================================== |
---|
| 653 | #D-function IGCM_sys_Put_Out |
---|
| 654 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
| 655 | #D-* Examples: |
---|
| 656 | #D- |
---|
| 657 | function IGCM_sys_Put_Out { |
---|
| 658 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 659 | if ( $DEBUG_sys ) ; then |
---|
| 660 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 661 | fi |
---|
| 662 | |
---|
| 663 | typeset status |
---|
| 664 | |
---|
| 665 | if [ $DRYRUN = 0 ]; then |
---|
| 666 | if [ ! -f ${1} ] ; then |
---|
| 667 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 668 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 669 | return 1 |
---|
| 670 | fi |
---|
| 671 | # |
---|
| 672 | if [ X${JobType} = XRUN ] ; then |
---|
| 673 | if [ X${3} = X ] ; then |
---|
| 674 | IGCM_sys_Chmod 444 ${1} |
---|
| 675 | fi |
---|
| 676 | fi |
---|
| 677 | # |
---|
| 678 | # |
---|
[792] | 679 | #Command depends on targeted file system |
---|
[798] | 680 | DEBUG_sys=false IGCM_sys_IsFileArchived $2 |
---|
[792] | 681 | if [ $? = 0 ] ; then |
---|
[1179] | 682 | mfput $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 683 | status=$? |
---|
| 684 | else |
---|
[795] | 685 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 686 | \cp $1 $2 > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 687 | status=$? |
---|
| 688 | fi |
---|
[771] | 689 | |
---|
| 690 | # #RSYNC WITH NETWORK RSH CALL |
---|
[795] | 691 | # IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
[1179] | 692 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 693 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 694 | |
---|
| 695 | # #RSYNC WITH NFS USE |
---|
[1179] | 696 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 697 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 698 | |
---|
| 699 | # status=$? |
---|
| 700 | # IGCM_sys_Rsync_out $status |
---|
| 701 | |
---|
[1179] | 702 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 703 | # (( status=status+$? )) |
---|
| 704 | |
---|
| 705 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 706 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : mfput or cp failed error code ${status}" |
---|
[1179] | 707 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 708 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 709 | else |
---|
[1179] | 710 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 711 | fi |
---|
| 712 | fi |
---|
| 713 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 714 | return 0 |
---|
| 715 | } |
---|
| 716 | |
---|
| 717 | #D-#================================================== |
---|
| 718 | #D-function IGCM_sys_Get |
---|
| 719 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 720 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 721 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 722 | function IGCM_sys_Get { |
---|
| 723 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 724 | |
---|
| 725 | typeset DEST status dm_liste |
---|
| 726 | |
---|
| 727 | if ( $DEBUG_sys ) ; then |
---|
| 728 | echo "IGCM_sys_Get :" $@ |
---|
| 729 | fi |
---|
| 730 | if [ $DRYRUN -le 2 ]; then |
---|
| 731 | if [ X${1} = X'/l' ] ; then |
---|
| 732 | eval set +A dm_liste \${${2}} |
---|
| 733 | else |
---|
| 734 | dm_liste=${1} |
---|
| 735 | fi |
---|
| 736 | eval DEST=\${${#}} |
---|
| 737 | |
---|
| 738 | # test if the (first) file is present in the old computation : |
---|
[798] | 739 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
[796] | 740 | if [ $? = 0 ] ; then |
---|
| 741 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 742 | status=$? |
---|
| 743 | else |
---|
[798] | 744 | IGCM_sys_TestFileBuffer ${dm_liste[0]} |
---|
[796] | 745 | status=$? |
---|
| 746 | fi |
---|
| 747 | |
---|
[771] | 748 | if [ ${status} -gt 0 ] ; then |
---|
| 749 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 750 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 751 | return |
---|
| 752 | fi |
---|
| 753 | |
---|
[792] | 754 | #Command depends on targeted file system |
---|
[798] | 755 | DEBUG_sys=false IGCM_sys_IsFileArchived ${dm_liste[0]} |
---|
[792] | 756 | if [ $? = 0 ] ; then |
---|
[1179] | 757 | mfget ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 758 | status=$? |
---|
| 759 | else |
---|
[1179] | 760 | \cp ${dm_liste[*]} ${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[792] | 761 | status=$? |
---|
| 762 | fi |
---|
[771] | 763 | |
---|
| 764 | # #RSYNC WITH NETWORK RSH CALL |
---|
[1179] | 765 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 766 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 767 | |
---|
| 768 | # #RSYNC WITH NFS USE |
---|
[1179] | 769 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 770 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
[771] | 771 | |
---|
| 772 | # status=$? |
---|
| 773 | # IGCM_sys_Rsync_out $status |
---|
| 774 | |
---|
[1179] | 775 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 776 | # (( status=status+$? )) |
---|
| 777 | |
---|
| 778 | if [ ${status} -gt 0 ] ; then |
---|
[792] | 779 | IGCM_debug_Print 2 "IGCM_sys_Get : mfget or cp failed error code ${status}" |
---|
[1179] | 780 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 781 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 782 | else |
---|
[1179] | 783 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
[771] | 784 | fi |
---|
| 785 | fi |
---|
| 786 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 787 | } |
---|
| 788 | |
---|
| 789 | #D-#================================================== |
---|
[835] | 790 | #D-function IGCM_sys_GetDate_Monitoring |
---|
| 791 | #D-* Purpose: get the last year for which the monitoring has been computed |
---|
| 792 | #D-* Examples: |
---|
| 793 | #D- |
---|
| 794 | function IGCM_sys_GetDate_Monitoring { |
---|
| 795 | IGCM_debug_PushStack "IGCM_sys_GetDate_Monitoring" $@ |
---|
| 796 | if ( $DEBUG_sys ) ; then |
---|
| 797 | echo "IGCM_sys_GetDate_Monitoring :" $@ |
---|
| 798 | fi |
---|
| 799 | |
---|
| 800 | IGCM_sys_Cd /tmp |
---|
[1129] | 801 | # NASTY HACK. We force /tmp here. This function is called only from the front-end and interactively. |
---|
| 802 | RUN_DIR_PATH=/tmp IGCM_sys_Get ${1} . |
---|
[835] | 803 | eval ${2}=$( cdo showyear $( basename ${1} ) 2> /dev/null | gawk '{ print $NF }' ) |
---|
[1131] | 804 | # Need to erase this file to avoid collision (permission denied getting file) between users on the front-end |
---|
| 805 | IGCM_sys_Rm -f $( basename ${1} ) |
---|
[835] | 806 | IGCM_sys_Cd - |
---|
| 807 | |
---|
| 808 | IGCM_debug_PopStack "IGCM_sys_GetDate_Monitoring" |
---|
| 809 | } |
---|
| 810 | |
---|
| 811 | #D-#================================================== |
---|
[1399] | 812 | #D-function IGCM_sys_Dods_Rm |
---|
| 813 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 814 | #D-* Examples: |
---|
| 815 | #D- |
---|
| 816 | function IGCM_sys_Dods_Rm { |
---|
| 817 | if ( $DEBUG_sys ) ; then |
---|
| 818 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 819 | fi |
---|
| 820 | |
---|
| 821 | typeset status |
---|
| 822 | if [ $DRYRUN = 0 ]; then |
---|
| 823 | if [ "$#" -eq 1 ]; then |
---|
| 824 | rsh ${STOREHOST} exec /bin/ksh <<EOF |
---|
| 825 | cd ${R_SAVE} |
---|
| 826 | /arch/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS}/${1} > /dev/null 2>&1 |
---|
| 827 | EOF |
---|
| 828 | status=$? |
---|
| 829 | else |
---|
| 830 | rsh ${STOREHOST} exec /bin/ksh <<EOF |
---|
| 831 | cd ${R_SAVE} |
---|
| 832 | /arch/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS} > /dev/null 2>&1 |
---|
| 833 | EOF |
---|
| 834 | status=$? |
---|
| 835 | fi |
---|
| 836 | fi |
---|
| 837 | |
---|
| 838 | return ${status} |
---|
| 839 | } |
---|
| 840 | |
---|
| 841 | #D-#================================================== |
---|
| 842 | #D-function IGCM_sys_Dods_Cp |
---|
| 843 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 844 | #D-* Examples: |
---|
| 845 | #D- |
---|
| 846 | function IGCM_sys_Dods_Cp { |
---|
| 847 | if ( $DEBUG_sys ) ; then |
---|
| 848 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 849 | fi |
---|
| 850 | return 0 |
---|
| 851 | } |
---|
| 852 | |
---|
| 853 | #D-#================================================== |
---|
[771] | 854 | #D-function IGCM_sys_Put_Dods |
---|
[1179] | 855 | #D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. |
---|
[771] | 856 | #D-* Examples: |
---|
| 857 | #D- |
---|
| 858 | function IGCM_sys_Put_Dods { |
---|
| 859 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 860 | if ( $DEBUG_sys ) ; then |
---|
| 861 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 862 | fi |
---|
[1179] | 863 | typeset status |
---|
[771] | 864 | if [ $DRYRUN = 0 ]; then |
---|
| 865 | # We take our time on that |
---|
| 866 | sleep 10 |
---|
| 867 | IGCM_sys_TestDirArchive ${R_SAVE}/${1} |
---|
| 868 | if [ $? != 0 ] ; then |
---|
| 869 | echo "WARNING : IGCM_sys_Put_Dods ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 870 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 871 | return |
---|
| 872 | fi |
---|
| 873 | |
---|
[1012] | 874 | rsh ${STOREHOST} exec /bin/ksh <<EOF |
---|
[771] | 875 | cd ${R_SAVE} |
---|
[1012] | 876 | /arch/local/bin/dods_rm DODS/pub/${LOGIN}/${R_DODS}/${1} > /dev/null 2>&1 |
---|
[771] | 877 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
[1012] | 878 | /arch/local/bin/dods_cp ${1} DODS/pub/${LOGIN}/${R_DODS} > /dev/null 2>&1 |
---|
[771] | 879 | /bin/chmod -R +rX ${R_SAVE}/${1} |
---|
| 880 | /bin/chmod -R u+w ${R_SAVE}/${1} |
---|
| 881 | EOF |
---|
| 882 | status=$? |
---|
| 883 | |
---|
| 884 | if [ ${status} -gt 0 ] ; then |
---|
| 885 | echo "IGCM_sys_Put_Dods : error." |
---|
| 886 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 887 | fi |
---|
| 888 | fi |
---|
| 889 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 890 | } |
---|
| 891 | |
---|
| 892 | ############################################################## |
---|
| 893 | # REBUILD OPERATOR |
---|
| 894 | |
---|
[811] | 895 | #D-#================================================== |
---|
[1163] | 896 | #D-function IGCM_sys_sync |
---|
| 897 | #D-* Purpose: flush buffer on disk (dummy function on Ada) |
---|
| 898 | #D-* Examples: |
---|
| 899 | #D- |
---|
| 900 | function IGCM_sys_sync { |
---|
| 901 | IGCM_debug_PushStack "IGCM_sys_sync" $@ |
---|
| 902 | if ( $DEBUG_sys ) ; then |
---|
| 903 | echo "IGCM_sys_sync :" $@ |
---|
| 904 | echo "Dummy call, let the system do that." |
---|
| 905 | fi |
---|
| 906 | IGCM_debug_PopStack "IGCM_sys_sync" |
---|
| 907 | } |
---|
| 908 | |
---|
[771] | 909 | ############################################################ |
---|
| 910 | # Activate Running Environnment Variables |
---|
| 911 | |
---|
[811] | 912 | #D-#================================================== |
---|
[1239] | 913 | #D-function IGCM_sys_activ_variables |
---|
[811] | 914 | #D-* Purpose: set environement variables prior to execution |
---|
| 915 | #D-* Examples: |
---|
| 916 | #D- |
---|
[771] | 917 | function IGCM_sys_activ_variables { |
---|
| 918 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 919 | if ( $DEBUG_sys ) ; then |
---|
[811] | 920 | echo "IGCM_sys_activ_variables" |
---|
[771] | 921 | fi |
---|
| 922 | |
---|
[811] | 923 | # -------------------------------------------------------------------- |
---|
| 924 | #D- MPI specifications |
---|
| 925 | # -------------------------------------------------------------------- |
---|
| 926 | |
---|
| 927 | # -------------------------------------------------------------------- |
---|
| 928 | #D- Other specifications |
---|
| 929 | # -------------------------------------------------------------------- |
---|
| 930 | |
---|
[771] | 931 | ulimit -s unlimited |
---|
[1012] | 932 | ## to be done only one time |
---|
| 933 | ## export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
[1068] | 934 | ## echo ${LD_LIBRARY_PATH} | grep -i netcdf >/dev/null 2>&1 || export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/smplocal/pub/NetCDF/4.1.3/lib:/smplocal/pub/HDF5/1.8.9/seq/lib |
---|
[1012] | 935 | IGCM_debug_Print 1 "set LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" |
---|
[771] | 936 | |
---|
[959] | 937 | export MP_STDOUTMODE=combined |
---|
| 938 | IGCM_debug_Print 1 "set MP_STDOUTMODE=${MP_STDOUTMODE}" |
---|
| 939 | |
---|
[1195] | 940 | ## fix to reduce memory usage. Required since 2014/22/04. On ada IDRIS. |
---|
| 941 | #export MP_EUILIBPATH=/smplocal/lib/ibmhpc/pe12012/ppe.pami/gnu/lib64/pami64 |
---|
| 942 | #IGCM_debug_Print 1 "set MP_EUILIBPATH=${MP_EUILIBPATH}" |
---|
[1004] | 943 | |
---|
[771] | 944 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 945 | } |
---|
| 946 | |
---|
| 947 | ############################################################ |
---|
| 948 | # Desactivate Running Environnment Variables |
---|
| 949 | |
---|
[811] | 950 | #D-#================================================== |
---|
| 951 | #D-function IGCM_sys_desactiv_variables |
---|
| 952 | #D-* Purpose: unset environement variables after execution |
---|
| 953 | #D-* Examples: |
---|
| 954 | #D- |
---|
[771] | 955 | function IGCM_sys_desactiv_variables { |
---|
| 956 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 957 | if ( $DEBUG_sys ) ; then |
---|
[811] | 958 | echo "IGCM_sys_desactiv_variables" |
---|
[771] | 959 | fi |
---|
| 960 | # -------------------------------------------------------------------- |
---|
| 961 | #D- MPI specifications |
---|
| 962 | # -------------------------------------------------------------------- |
---|
| 963 | |
---|
| 964 | # -------------------------------------------------------------------- |
---|
| 965 | #D- Other specifications |
---|
| 966 | # -------------------------------------------------------------------- |
---|
| 967 | |
---|
| 968 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 969 | } |
---|
| 970 | |
---|
| 971 | ############################################################ |
---|
[1238] | 972 | # Update job headers to be used by the scheduler |
---|
| 973 | |
---|
| 974 | #D-#================================================== |
---|
| 975 | #D-function IGCM_sys_updateHeaders |
---|
| 976 | #D-* Purpose: Update job headers to be used by the scheduler |
---|
| 977 | #D-* Examples: IGCM_sys_updateHeaders /path/to/Job_MYEXP |
---|
| 978 | #D- |
---|
| 979 | function IGCM_sys_updateHeaders { |
---|
| 980 | IGCM_debug_PushStack "IGCM_sys_updateHeaders" |
---|
| 981 | if ( $DEBUG_sys ) ; then |
---|
| 982 | echo "IGCM_sys_updateHeaders" |
---|
| 983 | fi |
---|
| 984 | typeset file |
---|
| 985 | file=$1 |
---|
| 986 | |
---|
| 987 | if [ ${executionType} -eq 1 ] ; then |
---|
| 988 | # MPMD + MPI |
---|
[1305] | 989 | if [ X${MPIEnvironment} = XIBM ] ; then |
---|
| 990 | sed -e "/::openMPthreads::/d" \ |
---|
[1238] | 991 | -e "s/::JobNumProcTot::/${coreNumber}/" \ |
---|
[1305] | 992 | ${file} > ${file}.tmp |
---|
| 993 | else |
---|
| 994 | sed -e "/::openMPthreads::/d" \ |
---|
| 995 | -e "s/@ job_type = parallel/@ job_type = mpich/" \ |
---|
| 996 | -e "s/::JobNumProcTot::/${coreNumber}/" \ |
---|
| 997 | ${file} > ${file}.tmp |
---|
| 998 | fi |
---|
[1238] | 999 | |
---|
| 1000 | elif [ ${executionType} -eq 2 ] ; then |
---|
| 1001 | # MPMD + MPI + OMP |
---|
[1305] | 1002 | if [ X${MPIEnvironment} = XIBM ] ; then |
---|
| 1003 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
[1242] | 1004 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
[1305] | 1005 | ${file} > ${file}.tmp |
---|
| 1006 | else |
---|
| 1007 | (( nodeNumber = coreNumber / core_per_node )) |
---|
| 1008 | [ $(( ${coreNumber} % ${core_per_node} )) -ne 0 ] && (( nodeNumber = nodeNumber + 1 )) |
---|
| 1009 | sed -e "/::openMPthreads::/d" \ |
---|
| 1010 | -e "s/@ job_type = parallel/@ job_type = mpich/" \ |
---|
| 1011 | -e "s/@ total_tasks = ::JobNumProcTot::/@ node = ${nodeNumber} /" \ |
---|
| 1012 | -e "/@ as_limit = 3.5gb/d" \ |
---|
| 1013 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
| 1014 | ${file} > ${file}.tmp |
---|
| 1015 | fi |
---|
[1238] | 1016 | |
---|
| 1017 | elif [ ${executionType} -eq 3 ] ; then |
---|
| 1018 | # SPMD + MPI/OMP |
---|
[1305] | 1019 | if [ X${MPIEnvironment} = XIBM ] ; then |
---|
| 1020 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
[1238] | 1021 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
[1305] | 1022 | ${file} > ${file}.tmp |
---|
| 1023 | else |
---|
| 1024 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
| 1025 | -e "s/@ job_type = parallel/@ job_type = mpich/" \ |
---|
| 1026 | -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
| 1027 | ${file} > ${file}.tmp |
---|
| 1028 | fi |
---|
[1238] | 1029 | |
---|
| 1030 | elif [ ${executionType} -eq 4 ] ; then |
---|
| 1031 | # SPMD + MPI only |
---|
[1305] | 1032 | if [ X${MPIEnvironment} = XIBM ] ; then |
---|
| 1033 | sed -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
[1238] | 1034 | -e "/::openMPthreads::/d" \ |
---|
[1305] | 1035 | ${file} > ${file}.tmp |
---|
| 1036 | else |
---|
| 1037 | sed -e "s/::JobNumProcTot::/${mpiTasks}/" \ |
---|
| 1038 | -e "s/@ job_type = parallel/@ job_type = mpich/" \ |
---|
| 1039 | -e "/::openMPthreads::/d" \ |
---|
| 1040 | ${file} > ${file}.tmp |
---|
| 1041 | fi |
---|
[1238] | 1042 | |
---|
| 1043 | elif [ ${executionType} -eq 5 ] ; then |
---|
| 1044 | # SPMD + OMP only |
---|
| 1045 | sed -e "s/::openMPthreads::/${openMPthreads}/" \ |
---|
[1240] | 1046 | -e "s/@ job_type = parallel/@ job_type = serial/" \ |
---|
[1238] | 1047 | -e "/::JobNumProcTot::/d" \ |
---|
| 1048 | ${file} > ${file}.tmp |
---|
| 1049 | |
---|
| 1050 | elif [ ${executionType} -eq 6 ] ; then |
---|
| 1051 | # SEQUENTIAL THEN |
---|
| 1052 | sed -e "s/::JobNumProcTot::/1/" \ |
---|
[1240] | 1053 | -e "s/@ job_type = parallel/@ job_type = serial/" \ |
---|
[1238] | 1054 | -e "/::openMPthreads::/d" \ |
---|
| 1055 | ${file} > ${file}.tmp |
---|
| 1056 | |
---|
| 1057 | fi |
---|
| 1058 | |
---|
| 1059 | IGCM_sys_Mv ${file}.tmp ${file} |
---|
| 1060 | |
---|
| 1061 | IGCM_debug_PopStack "IGCM_sys_updateHeaders" |
---|
| 1062 | } |
---|
| 1063 | |
---|
| 1064 | ############################################################ |
---|
[771] | 1065 | # Build MPI/OMP scripts run file (dummy function) |
---|
| 1066 | |
---|
[811] | 1067 | #D-#================================================== |
---|
| 1068 | #D-function IGCM_sys_build_run_file |
---|
| 1069 | #D-* Purpose: build run file (deprecated) |
---|
| 1070 | #D-* Examples: |
---|
| 1071 | #D- |
---|
[771] | 1072 | function IGCM_sys_build_run_file { |
---|
| 1073 | |
---|
[811] | 1074 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[771] | 1075 | |
---|
| 1076 | } |
---|
| 1077 | |
---|
| 1078 | ############################################################ |
---|
| 1079 | # Build MPI/OMP scripts |
---|
[811] | 1080 | |
---|
| 1081 | #D-#================================================== |
---|
| 1082 | #D-function IGCM_sys_build_execution_scripts |
---|
| 1083 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
| 1084 | #D-* Examples: |
---|
| 1085 | #D- |
---|
[771] | 1086 | function IGCM_sys_build_execution_scripts |
---|
| 1087 | { |
---|
| 1088 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1089 | if ( $DEBUG_sys ) ; then |
---|
| 1090 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1091 | fi |
---|
| 1092 | |
---|
| 1093 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
| 1094 | |
---|
[1179] | 1095 | # MPMD mode |
---|
[771] | 1096 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1097 | |
---|
[1305] | 1098 | # MPI IBM Environment |
---|
| 1099 | if ( [ "X${LOADL_STEP_TYPE}" = "XPARALLEL" ] || [ "X${LOADL_STEP_TYPE}" = "XSERIAL" ] ) ; then |
---|
| 1100 | IGCM_debug_Print 1 "You use IBM MPI environment" |
---|
| 1101 | if [ -f run_file ] ; then |
---|
| 1102 | IGCM_sys_Rm -f run_file |
---|
| 1103 | fi |
---|
| 1104 | touch run_file |
---|
[771] | 1105 | |
---|
[1305] | 1106 | # Build run_file |
---|
[771] | 1107 | |
---|
[1305] | 1108 | # First loop on the components for the coupler ie oasis (only if oasis3) |
---|
| 1109 | # the coupler ie oasis3 must be the first one |
---|
| 1110 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[771] | 1111 | |
---|
[1305] | 1112 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1113 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[771] | 1114 | |
---|
[1305] | 1115 | # for CPL component only |
---|
| 1116 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[771] | 1117 | |
---|
[1305] | 1118 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1119 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[777] | 1120 | |
---|
[1305] | 1121 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1122 | (( mpi_count = 1 )) |
---|
| 1123 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1124 | echo "./${ExeNameOut}" >> run_file |
---|
| 1125 | (( mpi_count = mpi_count + 1 )) |
---|
| 1126 | done |
---|
| 1127 | else |
---|
| 1128 | echo "./${ExeNameOut} " >> run_file |
---|
| 1129 | fi |
---|
[777] | 1130 | fi |
---|
[1305] | 1131 | |
---|
| 1132 | done |
---|
| 1133 | |
---|
| 1134 | # Then second loop on the components |
---|
| 1135 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1136 | |
---|
| 1137 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1138 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1139 | |
---|
| 1140 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1141 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1142 | |
---|
| 1143 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1144 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1145 | |
---|
| 1146 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1147 | # Check if the number of threads is correct |
---|
| 1148 | case ${comp_proc_omp_loc} in |
---|
| 1149 | 1|2|4) |
---|
| 1150 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads on IBM MPI Environment" |
---|
| 1151 | IGCM_debug_Print 1 "Beware : it may you use more CPU than needed." |
---|
| 1152 | ;; |
---|
[1357] | 1153 | 8) |
---|
| 1154 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads on IBM MPI Environment" |
---|
| 1155 | IGCM_debug_Print 1 "Beware : it may you use more CPU than needed." |
---|
| 1156 | IGCM_debug_Print 1 "Beware : these settings should not be used for IPSLCM coupled model!" |
---|
| 1157 | ;; |
---|
| 1158 | 16) |
---|
[1305] | 1159 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1160 | IGCM_debug_Print 2 "Beware : ${comp_proc_omp_loc} is too much for MPMD mode" |
---|
| 1161 | IGCM_debug_Print 2 "You will use more CPU than needed : try to use Intel-MPI environment to do such a thing !" |
---|
| 1162 | IGCM_debug_Verif_Exit |
---|
| 1163 | ;; |
---|
| 1164 | *) |
---|
| 1165 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1166 | IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads" |
---|
| 1167 | IGCM_debug_Print 2 "Only 1,2,4,8,16 as number of OMP threads are possible " |
---|
| 1168 | IGCM_debug_Verif_Exit |
---|
| 1169 | ;; |
---|
| 1170 | esac |
---|
| 1171 | |
---|
| 1172 | fi |
---|
| 1173 | |
---|
| 1174 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1175 | (( mpi_count = 1 )) |
---|
| 1176 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1177 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1178 | echo "env OMP_NUM_THREADS=$comp_proc_omp_loc ./${ExeNameOut}" >> run_file |
---|
| 1179 | else |
---|
| 1180 | echo "./${ExeNameOut}" >> run_file |
---|
| 1181 | fi |
---|
| 1182 | (( mpi_count = mpi_count + 1 )) |
---|
| 1183 | done |
---|
| 1184 | else |
---|
| 1185 | echo "./${ExeNameOut} " >> run_file |
---|
| 1186 | fi |
---|
| 1187 | fi |
---|
| 1188 | done |
---|
| 1189 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1190 | export KMP_STACKSIZE=200m |
---|
[771] | 1191 | fi |
---|
| 1192 | |
---|
[1305] | 1193 | EXECUTION="${HOST_MPIRUN_COMMAND} -pgmmodel mpmd -cmdfile ./run_file" |
---|
[771] | 1194 | |
---|
[1305] | 1195 | IGCM_sys_Chmod u+x run_file |
---|
| 1196 | if ( $DEBUG_sys ) ; then |
---|
| 1197 | echo "run_file contains : " |
---|
| 1198 | cat run_file |
---|
| 1199 | fi |
---|
[771] | 1200 | |
---|
| 1201 | |
---|
[1305] | 1202 | # MPI Intel Environment |
---|
| 1203 | else |
---|
| 1204 | IGCM_debug_Print 1 "You use Intel MPI environment" |
---|
[777] | 1205 | |
---|
[1305] | 1206 | # Only MPI (MPMD) |
---|
| 1207 | if ( ! ${OK_PARA_OMP} ) ; then |
---|
| 1208 | init_exec=n |
---|
| 1209 | |
---|
| 1210 | # First loop on the components for the coupler ie oasis (only if oasis3) |
---|
| 1211 | # the coupler ie oasis3 must be the first one |
---|
| 1212 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1213 | |
---|
| 1214 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1215 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1216 | |
---|
| 1217 | # for CPL component only |
---|
| 1218 | if [ "X${comp}" = "XCPL" ] && [ "X${ExeNameOut}" != X\"\" ] ; then |
---|
| 1219 | |
---|
| 1220 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1221 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1222 | |
---|
| 1223 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1224 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1225 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1226 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1227 | EXECUTION="${EXECUTION} -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
| 1228 | init_exec=y |
---|
| 1229 | fi |
---|
| 1230 | done |
---|
| 1231 | # Then second loop on the components |
---|
| 1232 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1233 | |
---|
| 1234 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1235 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1236 | |
---|
| 1237 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1238 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1239 | |
---|
| 1240 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1241 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1242 | |
---|
| 1243 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1244 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1245 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1246 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1247 | |
---|
| 1248 | if [ ${init_exec} = y ] ; then |
---|
| 1249 | EXECUTION="${EXECUTION} : -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
[1093] | 1250 | else |
---|
[1305] | 1251 | EXECUTION="${EXECUTION} -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
| 1252 | init_exec=y |
---|
[1093] | 1253 | fi |
---|
[1305] | 1254 | fi |
---|
| 1255 | done |
---|
| 1256 | # MPI-OpenMP (MPMD) |
---|
| 1257 | else |
---|
| 1258 | |
---|
| 1259 | # Execution specifications |
---|
| 1260 | EXECUTION="${EXECUTION} -configfile run_file" |
---|
| 1261 | export KMP_STACKSIZE=200m |
---|
| 1262 | if [ -f run_file ] ; then |
---|
| 1263 | IGCM_sys_Rm -f run_file |
---|
[777] | 1264 | fi |
---|
[1305] | 1265 | touch run_file |
---|
| 1266 | |
---|
| 1267 | # Initialisation of variables |
---|
| 1268 | string_final="" |
---|
| 1269 | string_final_hexa="" |
---|
| 1270 | current_core=0 |
---|
| 1271 | executable_nb=1 |
---|
| 1272 | |
---|
| 1273 | # Hosts treatment |
---|
| 1274 | for nodes in `echo $LOADL_PROCESSOR_LIST` |
---|
| 1275 | do |
---|
| 1276 | host[$i]=$nodes |
---|
| 1277 | i=$((i+1)) |
---|
| 1278 | done |
---|
| 1279 | |
---|
| 1280 | # Loop on the components |
---|
| 1281 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1282 | |
---|
| 1283 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1284 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1285 | |
---|
| 1286 | # Not possible if oasis has an executable (i.e old version of oasis3) |
---|
| 1287 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" = "XCPL" ] ) ; then |
---|
| 1288 | IGCM_debug_Exit "ERROR MPMD with hybrid MPI-OpenMP is not available with oasis3 version" |
---|
| 1289 | IGCM_debug_Print 2 "Only available with oasis3-MCT version coupler" |
---|
| 1290 | IGCM_debug_Verif_Exit |
---|
| 1291 | fi |
---|
| 1292 | |
---|
| 1293 | # Only if we really have an executable for the component : |
---|
| 1294 | if [ "X${ExeNameOut}" != X\"\" ] ; then |
---|
| 1295 | |
---|
| 1296 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1297 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1298 | |
---|
| 1299 | # Check if the number of threads is correct |
---|
| 1300 | case ${comp_proc_omp_loc} in |
---|
| 1301 | 1|2|4|8|16) |
---|
| 1302 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads" |
---|
| 1303 | ;; |
---|
| 1304 | *) |
---|
| 1305 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 1306 | IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads" |
---|
| 1307 | IGCM_debug_Print 2 "Only 1,2,4,8,16 as number of OMP threads are possible " |
---|
| 1308 | IGCM_debug_Verif_Exit |
---|
| 1309 | ;; |
---|
| 1310 | esac |
---|
| 1311 | |
---|
| 1312 | |
---|
| 1313 | # Build run_file for Ada Intel-MPI environment : method used to assign cores and nodes for the MPI process by using hexadecimal mask |
---|
| 1314 | # Example of run_file : |
---|
| 1315 | #-host host0 -n 4 -env I_MPI_PIN_DOMAIN=[ff,ff00,ff0000,ff000000] ./a.out |
---|
| 1316 | #-host host1 -n 4 -env I_MPI_PIN_DOMAIN=[ff,ff00,ff0000,ff000000] ./a.out |
---|
| 1317 | #-host host2 -n 10 -env I_MPI_PIN_DOMAIN=[3,c,30,c0,300,c00,3000,c000,30000,c0000,100000,200000,400000,800000,1000000,2000000,4000000,8000000,10000000,20000000] ./b.out |
---|
| 1318 | #-host host2 -n 10 ./c.out |
---|
| 1319 | # Example of final command : |
---|
| 1320 | # mpirun -configfile run_file |
---|
| 1321 | |
---|
| 1322 | rank=0 |
---|
| 1323 | # For one specific executable, loop on mpi process |
---|
| 1324 | for nb_proc_mpi in `seq 0 $(($comp_proc_mpi_loc-1))`; do |
---|
| 1325 | (( index_host = current_core / core_per_node )) |
---|
| 1326 | host_value=${host[${index_host}]} |
---|
| 1327 | (( slot = current_core % core_per_node )) |
---|
| 1328 | # loop on omp threads for each mpi process (set the appropriate bit to 1 and append it to previous one) |
---|
| 1329 | for index in `seq $slot $(($slot+$comp_proc_omp_loc-1))`; do |
---|
| 1330 | string_final="1"$string_final |
---|
| 1331 | done |
---|
| 1332 | # convert binary mask to hexadecimal mask |
---|
| 1333 | if [ $rank -ne 0 ] ; then |
---|
| 1334 | string_final_hexa=$string_final_hexa","$( printf '%x\n' "$((2#$string_final))" ) |
---|
| 1335 | else |
---|
| 1336 | string_final_hexa=$( printf '%x\n' "$((2#$string_final))" ) |
---|
| 1337 | fi |
---|
| 1338 | # replace bit 1 by bit 0 in order to append next one (next one wil be 1) |
---|
| 1339 | string_final=$( echo $string_final | sed "s/1/0/g" ) |
---|
| 1340 | # mpi rank = mpi_rank + 1 |
---|
| 1341 | (( rank = rank + 1 )) |
---|
| 1342 | # current core takes into account the number of omp threads which was previously append |
---|
| 1343 | (( current_core = current_core + comp_proc_omp_loc )) |
---|
| 1344 | # We write to the configuration file either we switch to the next node or we switch to the next executable |
---|
| 1345 | if ( [ $(( current_core / core_per_node )) -ne $index_host ] || [ $nb_proc_mpi -eq $(($comp_proc_mpi_loc-1)) ] ) ; then |
---|
| 1346 | # I_MPI_PIN_DOMAIN variable must be given once per node |
---|
| 1347 | if [ $executable_nb -eq 1 ] ; then |
---|
| 1348 | echo "-host $host_value -n $rank -env I_MPI_PIN_DOMAIN=[$string_final_hexa] ./$ExeNameOut" >> run_file |
---|
| 1349 | else |
---|
| 1350 | sed -i "/$host_value/s/\]/\,$string_final_hexa\]/g" run_file |
---|
| 1351 | echo "-host $host_value -n $rank ./$ExeNameOut" >> run_file |
---|
| 1352 | fi |
---|
| 1353 | # +1 for the number of executbale on the same node |
---|
| 1354 | if [ $nb_proc_mpi -eq $(($comp_proc_mpi_loc-1)) ] ; then |
---|
| 1355 | (( executable_nb = executable_nb + 1 )) |
---|
| 1356 | fi |
---|
| 1357 | # Some initializations if we switch to the next node |
---|
| 1358 | if [ $(( current_core / core_per_node )) -ne $index_host ] ; then |
---|
| 1359 | string_final="" |
---|
| 1360 | string_final_hexa="" |
---|
| 1361 | rank=0 |
---|
| 1362 | executable_nb=1 |
---|
| 1363 | fi |
---|
| 1364 | fi |
---|
| 1365 | done |
---|
| 1366 | |
---|
| 1367 | fi |
---|
| 1368 | done |
---|
| 1369 | IGCM_sys_Chmod u+x run_file |
---|
| 1370 | if ( $DEBUG_sys ) ; then |
---|
| 1371 | echo "run_file contains : " |
---|
| 1372 | cat run_file |
---|
[1093] | 1373 | fi |
---|
[771] | 1374 | fi |
---|
| 1375 | fi |
---|
| 1376 | |
---|
[1180] | 1377 | # Only one executable (SPMD mode). |
---|
| 1378 | else |
---|
[771] | 1379 | |
---|
| 1380 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1381 | |
---|
| 1382 | # Only if we really have an executable for the component : |
---|
| 1383 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1384 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[847] | 1385 | |
---|
| 1386 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1387 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[853] | 1388 | export KMP_STACKSIZE=200m |
---|
| 1389 | #export KMP_LIBRARY=turnaround |
---|
[847] | 1390 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1391 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1392 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1393 | fi |
---|
[1305] | 1394 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1395 | if ( [ "X${LOADL_STEP_TYPE}" = "XPARALLEL" ] || [ "X${LOADL_STEP_TYPE}" = "XSERIAL" ] ) ; then |
---|
| 1396 | EXECUTION="${HOST_MPIRUN_COMMAND} ./${ExeNameOut}" |
---|
| 1397 | else |
---|
| 1398 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1399 | EXECUTION="${HOST_MPIRUN_COMMAND} -np ${comp_proc_mpi_loc} ./${ExeNameOut}" |
---|
| 1400 | fi |
---|
| 1401 | else |
---|
| 1402 | EXECUTION="/usr/bin/time ./${ExeNameOut}" |
---|
| 1403 | fi |
---|
[771] | 1404 | fi |
---|
| 1405 | |
---|
| 1406 | done |
---|
| 1407 | |
---|
| 1408 | fi |
---|
| 1409 | |
---|
| 1410 | IGCM_debug_Print 1 "sys ada : execution command is " |
---|
| 1411 | IGCM_debug_Print 1 "$EXECUTION" |
---|
| 1412 | |
---|
| 1413 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
| 1414 | } |
---|
| 1415 | |
---|
[933] | 1416 | #D-#================================================== |
---|
| 1417 | #D-function IGCM_sys_check_path |
---|
| 1418 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
| 1419 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
| 1420 | #D-* Examples: |
---|
| 1421 | #D- |
---|
| 1422 | function IGCM_sys_check_path { |
---|
| 1423 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
| 1424 | if ( $DEBUG_sys ) ; then |
---|
| 1425 | echo "IGCM_sys_check_path" |
---|
| 1426 | fi |
---|
[811] | 1427 | |
---|
[1012] | 1428 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${ARCHIVE} ] ) ; then |
---|
[933] | 1429 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
| 1430 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
[936] | 1431 | IGCM_debug_Exit "This will stop the job" |
---|
[933] | 1432 | fi |
---|
| 1433 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
| 1434 | } |
---|
| 1435 | |
---|
[811] | 1436 | #D-#================================================== |
---|
| 1437 | #D-function IGCM_sys_check_quota |
---|
| 1438 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
| 1439 | #D-* Examples: |
---|
| 1440 | #D- |
---|
[771] | 1441 | function IGCM_sys_check_quota { |
---|
| 1442 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1443 | if ( $DEBUG_sys ) ; then |
---|
[811] | 1444 | echo "IGCM_sys_check_quota" |
---|
[771] | 1445 | fi |
---|
| 1446 | # Limit of quota (in %) |
---|
| 1447 | limit_quota=90 |
---|
[811] | 1448 | |
---|
[771] | 1449 | # Check of the volume |
---|
[945] | 1450 | volume_quota=$(quota_u -w 2>/dev/null| grep 'Quota soft' | gawk '{print $5}') |
---|
[771] | 1451 | if [ ! X${volume_quota} = X ] ; then |
---|
| 1452 | quota_volume=${volume_quota%%\%} |
---|
| 1453 | # echo $quota_volume |
---|
[946] | 1454 | if [ $(echo "${quota_volume} > ${limit_quota}" | bc) -eq 1 ] ; then |
---|
[771] | 1455 | IGCM_debug_Print 1 "Please, check your quota of volume on workgpfs" |
---|
| 1456 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 1457 | IGCM_debug_Print 1 "Use the quota_u -w command to check" |
---|
| 1458 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 1459 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 1460 | IGCM_debug_Verif_Exit |
---|
| 1461 | fi |
---|
| 1462 | |
---|
| 1463 | fi |
---|
| 1464 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1465 | } |
---|
| 1466 | |
---|
| 1467 | #D-#================================================== |
---|
[1286] | 1468 | #D-function IGCM_sys_projectAccounting |
---|
| 1469 | #D-* Purpose: store project accounting information in a file |
---|
| 1470 | #D-* Examples: |
---|
| 1471 | #D- |
---|
| 1472 | function IGCM_sys_projectAccounting { |
---|
| 1473 | IGCM_debug_PushStack "IGCM_sys_projectAccounting" |
---|
| 1474 | if ( $DEBUG_sys ) ; then |
---|
| 1475 | echo "IGCM_sys_check_quota" |
---|
| 1476 | fi |
---|
| 1477 | |
---|
| 1478 | cpt > $1 |
---|
| 1479 | |
---|
| 1480 | IGCM_debug_PopStack "IGCM_sys_projectAccounting" |
---|
| 1481 | } |
---|
| 1482 | |
---|
| 1483 | #D-#================================================== |
---|
[1244] | 1484 | #D-function IGCM_sys_getJobSchedulerID |
---|
| 1485 | #D-* Purpose: Get the job ID during execution |
---|
| 1486 | #D-* Examples: IGCM_sys_getJobSchedulerID jobSchedulerID |
---|
| 1487 | #D- |
---|
| 1488 | function IGCM_sys_getJobSchedulerID { |
---|
| 1489 | IGCM_debug_PushStack "IGCM_sys_getJobSchedulerID" |
---|
| 1490 | if ( $DEBUG_sys ) ; then |
---|
| 1491 | echo "IGCM_sys_getJobSchedulerID" |
---|
| 1492 | fi |
---|
| 1493 | |
---|
| 1494 | eval ${1}=$( echo $LOADL_STEP_ID | awk -F. '{print $4}' ) |
---|
| 1495 | |
---|
| 1496 | IGCM_debug_PopStack "IGCM_sys_getJobSchedulerID" |
---|
| 1497 | } |
---|
| 1498 | |
---|
| 1499 | #D-#================================================== |
---|
[958] | 1500 | #D-function IGCM_sys_GetJobID |
---|
[1244] | 1501 | #D-* Purpose: Get the job ID from the JobName |
---|
[1179] | 1502 | #D-* Examples: IGCM_sys_GetJobID ${JobName} ${TargetUsr} JobID |
---|
[958] | 1503 | #D- |
---|
| 1504 | function IGCM_sys_GetJobID { |
---|
| 1505 | IGCM_debug_PushStack "IGCM_sys_GetJobID" |
---|
| 1506 | if ( $DEBUG_sys ) ; then |
---|
| 1507 | echo "IGCM_sys_GetJobID" |
---|
| 1508 | fi |
---|
| 1509 | |
---|
| 1510 | # Print only the full (-W) JobID (%id) and JobName (%jn) |
---|
| 1511 | ID=$( llq -u $2 -W -f %id %jn | \ |
---|
[1305] | 1512 | gawk -v JobName=$1 '( $NF ~ JobName ) { print $1 }' ) |
---|
[958] | 1513 | |
---|
| 1514 | eval ${3}=${ID} |
---|
| 1515 | IGCM_debug_PopStack "IGCM_sys_GetJobID" |
---|
| 1516 | } |
---|
| 1517 | |
---|
| 1518 | #D-#================================================== |
---|
[771] | 1519 | #D-function IGCM_sys_CountJobInQueue |
---|
[1244] | 1520 | #D-* Purpose: Count number of users job |
---|
[771] | 1521 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 1522 | #D- |
---|
| 1523 | function IGCM_sys_CountJobInQueue { |
---|
| 1524 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 1525 | if ( $DEBUG_sys ) ; then |
---|
| 1526 | echo "IGCM_sys_CountJobInQueue" |
---|
| 1527 | fi |
---|
| 1528 | |
---|
| 1529 | # Print only the full (-W) JobName (%jn) |
---|
| 1530 | NbRun=$( llq -W -f %jn | grep -c "$1" ) |
---|
| 1531 | |
---|
| 1532 | eval ${2}=${NbRun} |
---|
| 1533 | |
---|
| 1534 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 1535 | } |
---|
| 1536 | |
---|
[955] | 1537 | #D-#================================================== |
---|
| 1538 | #D-function IGCM_sys_ListJobInQueue |
---|
[1244] | 1539 | #D-* Purpose: Produce a list of users jobs |
---|
[955] | 1540 | #D-* Examples: IGCM_sys_ListJobInQueue ${User} JobNameList |
---|
| 1541 | #D- |
---|
| 1542 | function IGCM_sys_ListJobInQueue { |
---|
[1297] | 1543 | IGCM_debug_PushStack "IGCM_sys_ListJobInQueue" |
---|
[955] | 1544 | if ( $DEBUG_sys ) ; then |
---|
| 1545 | echo "IGCM_sys_ListJobInQueue" |
---|
| 1546 | fi |
---|
| 1547 | |
---|
[960] | 1548 | # With -W option, column width is as large as necessary |
---|
| 1549 | set -A JobList $( llq -u $1 -W -f %jn | head -n -2 | tail -n +3 | \ |
---|
[1305] | 1550 | gawk '( $1 != /TS/ && \ |
---|
[960] | 1551 | $1 !~ /PACK/ && \ |
---|
| 1552 | $1 !~ /REBUILD/ && \ |
---|
| 1553 | $1 !~ /pack/ ) \ |
---|
| 1554 | { print $1 }' | sed -e "s/\(.*\)\.[0-9]*/\1/" ) |
---|
[955] | 1555 | |
---|
| 1556 | eval set -A ${2} ${JobList[*]} |
---|
| 1557 | |
---|
| 1558 | IGCM_debug_PopStack "IGCM_sys_ListJobInQueue" |
---|
| 1559 | } |
---|
[1272] | 1560 | |
---|
| 1561 | #D-#================================================== |
---|
| 1562 | #D-function IGCM_sys_atlas |
---|
| 1563 | #D-* Purpose: encapsulate atlas call so as to manage error code and curie specificity |
---|
| 1564 | #D-* Examples: |
---|
| 1565 | #D- |
---|
| 1566 | function IGCM_sys_atlas { |
---|
| 1567 | IGCM_debug_PushStack "IGCM_sys_atlas" $@ |
---|
| 1568 | if ( $DEBUG_sys ) ; then |
---|
| 1569 | echo "IGCM_sys_atlas :" $@ |
---|
| 1570 | fi |
---|
| 1571 | |
---|
| 1572 | typeset status |
---|
| 1573 | |
---|
| 1574 | \atlas $@ > ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ 2>&1 |
---|
| 1575 | status=$? |
---|
| 1576 | if [ ${status} -gt 0 ] ; then |
---|
| 1577 | echo "IGCM_sys_atlas : error code ${status}" |
---|
[1305] | 1578 | cat ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1579 | \rm ${OUTCOMMAND_PATH}/out_command_${LOGIN}.$$ |
---|
| 1580 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1581 | return 1 |
---|
| 1582 | else |
---|
| 1583 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1584 | return 0 |
---|
| 1585 | fi |
---|
[1297] | 1586 | |
---|
[1305] | 1587 | IGCM_debug_PopStack "IGCM_sys_atlas" |
---|
| 1588 | } |
---|
[1297] | 1589 | |
---|
[1399] | 1590 | #D-#================================================== |
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| 1591 | #D-function IGCM_sys_rebuild_nemo |
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| 1592 | #D-* Purpose: rebuild nemo parallel files with general rebuild |
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| 1593 | #D-* Examples: |
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| 1594 | #D- |
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| 1595 | |
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| 1596 | function IGCM_sys_rebuild_nemo { |
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| 1597 | IGCM_debug_PushStack "IGCM_sys_rebuild_nemo" $@ |
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| 1598 | if ( $DEBUG_sys ) ; then |
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| 1599 | echo "IGCM_sys_rebuild_nemo :" $@ |
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| 1600 | fi |
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| 1601 | |
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| 1602 | nemo_generic_restart_file_name_out=${1} |
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| 1603 | nemo_extension_out=${3} |
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| 1604 | shift ; shift ; shift |
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| 1605 | |
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| 1606 | IGCM_sys_rebuild -o ${nemo_generic_restart_file_name_out}.${nemo_extension_out} $@ |
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| 1607 | |
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| 1608 | IGCM_debug_PopStack "IGCM_sys_rebuild_nemo" |
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| 1609 | } |
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| 1610 | |
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| 1611 | |
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