[622] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
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| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[623] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[622] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[623] | 21 | #D-LibIGCM_sys for Curie |
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[622] | 22 | #D-#================================================== |
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| 23 | #D- |
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[623] | 24 | #D- This ksh library if a layer under some usefull |
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[622] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[622] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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| 67 | # $username ou whoami |
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| 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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| 69 | # $hostname of the MASTER job |
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| 70 | typeset MASTER=curie |
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[880] | 71 | # add default project on curie |
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[900] | 72 | typeset DEFAULT_PROJECT=gen0826 |
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[622] | 73 | |
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| 74 | #D- |
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| 75 | #D-#================================================== |
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| 76 | #D-Program used in libIGCM |
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| 77 | #D-#================================================== |
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| 78 | |
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[742] | 79 | # Submit command |
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[747] | 80 | typeset SUBMIT=${SUBMIT:=ccc_msub} |
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[622] | 81 | # rsync with path |
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| 82 | typeset -r RSYNC=/usr/bin/rsync |
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| 83 | # RSYNC_opt args to rsync |
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| 84 | typeset -r RSYNC_opt="-va" |
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| 85 | # ie storage filesystem |
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[623] | 86 | typeset -r STOREHOST=${MASTER} |
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[622] | 87 | |
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| 88 | #==================================================== |
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| 89 | # Source default environment |
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| 90 | #==================================================== |
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| 91 | ##. /etc/profile |
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| 92 | |
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| 93 | #==================================================== |
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| 94 | # Set environment tools (ferret, nco, cdo) |
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| 95 | #==================================================== |
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[996] | 96 | if [ X${TaskType} = Xcomputing ] ; then |
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| 97 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_netcdf4_curie_ksh > /dev/null 2>&1 |
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| 98 | # to run with netcdf 3.6.3 ie compilation done before 17/2/2014 |
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| 99 | # uncomment 2 lines : |
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| 100 | # module unload netcdf |
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| 101 | # module load netcdf/3.6.3 |
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| 102 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64_CURIE/bin |
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[1026] | 103 | export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddPerturbation/src_X64_CURIE/bin |
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[996] | 104 | else |
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| 105 | . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_netcdf4_curie_ksh > /dev/null 2>&1 |
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| 106 | fi |
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[622] | 107 | |
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| 108 | #==================================================== |
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| 109 | # Specific for ocean additionnal diagnostic |
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| 110 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 111 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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| 112 | |
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| 113 | #==================================================== |
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| 114 | # Host specific DIRECTORIES |
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| 115 | #==================================================== |
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| 116 | |
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[623] | 117 | # ============ CESIUM START ============ # |
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| 118 | |
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[622] | 119 | #==================================================== |
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[623] | 120 | #- Mirror libIGCM from titane to cesium if needed |
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| 121 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 122 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 123 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 124 | #else |
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| 125 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 126 | #fi |
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| 127 | |
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| 128 | #==================================================== |
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| 129 | #- libIGCM_POST |
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| 130 | #if ( ${MirrorlibIGCM} ) ; then |
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| 131 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 132 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 133 | #else |
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| 134 | # typeset -r libIGCM_POST=${libIGCM} |
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| 135 | #fi |
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| 136 | |
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| 137 | # ============ CESIUM END ============ # |
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| 138 | |
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| 139 | #==================================================== |
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| 140 | #- MirrorlibIGCM for frontend |
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| 141 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 142 | |
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| 143 | #==================================================== |
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| 144 | #- libIGCM_POST for frontend |
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| 145 | typeset -r libIGCM_POST=${libIGCM} |
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| 146 | |
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| 147 | #==================================================== |
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[622] | 148 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 149 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 150 | |
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| 151 | #==================================================== |
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| 152 | #- SUBMIT_DIR : submission dir |
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[1010] | 153 | typeset -x SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}} |
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[622] | 154 | |
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| 155 | #==================================================== |
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| 156 | #- IN |
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| 157 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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| 158 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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| 159 | |
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| 160 | #==================================================== |
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| 161 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[850] | 162 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}_${$}} |
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[622] | 163 | |
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| 164 | #==================================================== |
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| 165 | #- HOST_MPIRUN_COMMAND |
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[808] | 166 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun -E-K1"} |
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[622] | 167 | |
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| 168 | #==================================================== |
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| 169 | #- Max number of arguments passed to nco operator or demigration command |
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| 170 | UNIX_MAX_LIMIT=360 |
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| 171 | |
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[623] | 172 | #==================================================== |
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| 173 | #- set PackDefault true on curie |
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| 174 | PackDefault=true |
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| 175 | |
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[664] | 176 | #==================================================== |
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| 177 | #- Number of core per node (max number of OpenMP task) |
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[622] | 178 | NUM_COREPERNODE=8 |
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| 179 | |
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[623] | 180 | #==================================================== |
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| 181 | #- Default number of MPI task for IPSL coupled model |
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| 182 | #- required for backward compatibility |
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| 183 | #- |
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| 184 | DEFAULT_NUM_PROC_OCE=5 |
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| 185 | DEFAULT_NUM_PROC_CPL=1 |
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[637] | 186 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 187 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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[623] | 188 | |
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[725] | 189 | #D-#================================================== |
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[1057] | 190 | #D-function IGCM_sys_defineArchives |
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| 191 | #D-* Purpose: |
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| 192 | #D-* Define ARCHIVE : Dedicated to large files |
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| 193 | #D-* Define STORAGE : Dedicated to small/medium files |
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| 194 | #D-* Define R_OUT : Output tree located on ARCHIVE |
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| 195 | #D-* Define R_FIG : Output tree located on STORAGE hosting figures (monitoring and atlas, and/or small files) |
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| 196 | #D-* Define R_BUF : Output tree located on SCRATCHDIR hosting files waiting for rebuild or pack processes |
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| 197 | #D-* if SpaceName=TEST everything is stored on SCRATCHDIR |
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[725] | 198 | #D-* Examples: |
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| 199 | #D- |
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[1057] | 200 | function IGCM_sys_defineArchives { |
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| 201 | IGCM_debug_PushStack "IGCM_sys_defineArchives" |
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[676] | 202 | |
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[1060] | 203 | if [ ! X${config_UserChoices_ARCHIVE} = X ]; then |
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[1057] | 204 | #==================================================== |
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| 205 | #- ARCHIVE (dedicated to large files) |
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[1063] | 206 | ARCHIVE=${config_UserChoices_ARCHIVE} |
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[1057] | 207 | else |
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| 208 | #==================================================== |
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| 209 | #- ARCHIVE (dedicated to large files) |
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[1063] | 210 | ARCHIVE=${CCCSTOREDIR} |
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[1057] | 211 | fi |
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[725] | 212 | |
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[1060] | 213 | if [ ! X${config_UserChoices_STORAGE} = X ]; then |
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[1057] | 214 | #==================================================== |
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| 215 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 216 | STORAGE=${config_UserChoices_STORAGE} |
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[1057] | 217 | else |
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| 218 | #==================================================== |
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| 219 | #- STORAGE (dedicated to small/medium files) |
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[1063] | 220 | STORAGE=${CCCWORKDIR} |
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[1057] | 221 | fi |
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[725] | 222 | |
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[1057] | 223 | if [ X${config_UserChoices_SpaceName} = XTEST ]; then |
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| 224 | #==================================================== |
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| 225 | #- R_OUT |
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[1063] | 226 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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[1057] | 227 | |
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| 228 | #==================================================== |
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| 229 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 230 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[1057] | 231 | |
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| 232 | IGCM_debug_Print 1 "SpaceName=TEST ==> OVERRULE destination path directories" |
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| 233 | |
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| 234 | else |
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| 235 | #==================================================== |
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| 236 | #- R_OUT |
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[1063] | 237 | R_OUT=${ARCHIVE}/IGCM_OUT |
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[1057] | 238 | |
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| 239 | #==================================================== |
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| 240 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[1063] | 241 | R_FIG=${STORAGE}/IGCM_OUT |
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[1057] | 242 | fi |
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| 243 | |
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| 244 | #==================================================== |
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| 245 | #- R_BUF (ONLY FOR double copy an scratch) |
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[1063] | 246 | R_BUF=${SCRATCHDIR}/IGCM_OUT |
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[1057] | 247 | |
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[1141] | 248 | #==================================================== |
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| 249 | #- R_TMP (point a space acting as /tmp) |
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| 250 | R_TMP=/tmp |
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| 251 | |
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[1057] | 252 | IGCM_debug_Print 1 "R_OUT has been defined = ${R_OUT}" |
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| 253 | IGCM_debug_Print 1 "R_BUF has been defined = ${R_BUF}" |
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| 254 | IGCM_debug_Print 1 "R_FIG has been defined = ${R_FIG}" |
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| 255 | |
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| 256 | IGCM_debug_PopStack "IGCM_sys_defineArchives" |
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[725] | 257 | } |
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| 258 | |
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[622] | 259 | #D-#================================================== |
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| 260 | #D-function IGCM_sys_RshMaster |
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[623] | 261 | #D-* Purpose: Connection to frontend machine. |
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[622] | 262 | #D-* Examples: |
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| 263 | #D- |
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| 264 | function IGCM_sys_RshMaster { |
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[623] | 265 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 266 | /bin/ksh <<-EOF |
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[622] | 267 | export libIGCM=${libIGCM} |
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| 268 | export DEBUG_debug=${DEBUG_debug} |
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| 269 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 270 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 271 | ${@} |
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| 272 | EOF |
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[623] | 273 | if [ $? -gt 0 ] ; then |
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| 274 | echo "IGCM_sys_RshMaster : erreur." |
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| 275 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 276 | fi |
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| 277 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[622] | 278 | } |
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| 279 | |
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| 280 | #D-#================================================== |
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| 281 | #D-function IGCM_sys_RshArchive |
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| 282 | #D-* Purpose: Archive rsh command |
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| 283 | #D-* Examples: |
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| 284 | #D- |
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| 285 | function IGCM_sys_RshArchive { |
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[623] | 286 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 287 | /bin/ksh <<-EOF |
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[622] | 288 | ${@} |
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| 289 | EOF |
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[811] | 290 | status=$? |
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| 291 | if [ ${status} -gt 0 ] ; then |
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| 292 | IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}" |
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[623] | 293 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 294 | fi |
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| 295 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[622] | 296 | } |
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| 297 | |
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| 298 | #D-#================================================== |
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[845] | 299 | #D-function IGCM_sys_RshArchive_NoError |
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| 300 | #D-* Purpose: Archive rsh command, without error |
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| 301 | #D-* used only in monitoring.job |
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| 302 | #D-* Examples: |
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| 303 | #D- |
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| 304 | function IGCM_sys_RshArchive_NoError { |
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| 305 | IGCM_debug_PushStack "IGCM_sys_RshArchive_NoError" $@ |
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| 306 | /bin/ksh <<-EOF |
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| 307 | ${@} 2> \dev\null |
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| 308 | EOF |
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| 309 | IGCM_debug_PopStack "IGCM_sys_RshArchive_NoError" |
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| 310 | } |
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| 311 | |
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| 312 | #D-#================================================== |
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[622] | 313 | #D-function IGCM_sys_RshPost |
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| 314 | #D-* Purpose: Post-process rsh command |
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| 315 | #D-* Examples: |
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| 316 | #D- |
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| 317 | function IGCM_sys_RshPost { |
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[623] | 318 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 319 | if ( $DEBUG_sys ) ; then |
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| 320 | echo "IGCM_sys_RshPost :" $@ |
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| 321 | fi |
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| 322 | # keep standard input (stdin) for the loop onto temporary file |
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[811] | 323 | cat >/tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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[623] | 324 | |
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[811] | 325 | /bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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[623] | 326 | if [ $? -gt 0 ] ; then |
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| 327 | echo "IGCM_sys_RshPost : erreur." |
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| 328 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 329 | fi |
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| 330 | # delete temporary file |
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[811] | 331 | \rm /tmp/tmp_IGCM_sys_RshPost_$$_${LOGNAME} |
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[623] | 332 | |
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| 333 | # ============ FRONTEND END ============ # |
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| 334 | |
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| 335 | # ============ CESIUM START ============ # |
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| 336 | # typeset NB_ESSAI DELAI status i |
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| 337 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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| 338 | # #little hack so that rebuild submission is done on titane not an cesium |
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| 339 | # |
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| 340 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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| 341 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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| 342 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 343 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 344 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 345 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 346 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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| 347 | # |
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| 348 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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| 349 | # cat tmp_IGCM_sys_RshPost_$$ |
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| 350 | # |
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| 351 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 352 | # if [ $? -gt 0 ] ; then |
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| 353 | # echo "IGCM_sys_RshPost : erreur." |
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| 354 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 355 | # fi |
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| 356 | # # delete temporary file |
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| 357 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 358 | # |
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| 359 | # else |
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| 360 | # # number of tentative |
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| 361 | # NB_ESSAI=10 |
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| 362 | # # time delay between tentative |
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| 363 | # DELAI=10 |
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| 364 | # i=0 |
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| 365 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 366 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 367 | # status=$? |
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| 368 | # if [ ${status} -ne 0 ]; |
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| 369 | # then |
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[785] | 370 | # sleep $DELAI |
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[623] | 371 | # else |
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[785] | 372 | # break |
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[623] | 373 | # fi |
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| 374 | # let i=$i+1 |
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| 375 | # done |
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| 376 | # # delete temporary file |
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| 377 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 378 | # |
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| 379 | # if [ ${status} -gt 0 ] ; then |
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| 380 | # echo "IGCM_sys_RshPost : erreur." |
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| 381 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 382 | # fi |
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| 383 | # fi |
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| 384 | |
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| 385 | # ============ CESIUM END ============ # |
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| 386 | |
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| 387 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[622] | 388 | } |
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| 389 | |
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| 390 | #D-#================================================== |
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| 391 | #D-function IGCM_sys_SendMail |
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| 392 | #D-* Purpose: Send mail when simulation is over |
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| 393 | #D-* Examples: |
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| 394 | #D- |
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| 395 | function IGCM_sys_SendMail { |
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[623] | 396 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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[922] | 397 | |
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[623] | 398 | if ( $DEBUG_sys ) ; then |
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| 399 | echo "IGCM_sys_SendMail :" $@ |
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| 400 | fi |
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[622] | 401 | |
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[922] | 402 | if [ X${1} = XAccounting ] ; then |
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| 403 | status=Accounting |
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| 404 | mailText=jobAccounting.mail |
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| 405 | elif ( ${ExitFlag} ) ; then |
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[623] | 406 | status=failed |
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[922] | 407 | mailText=jobEnd.mail |
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[623] | 408 | else |
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| 409 | status=completed |
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[922] | 410 | mailText=jobEnd.mail |
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[623] | 411 | fi |
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[622] | 412 | |
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[922] | 413 | # Update selected mail template |
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| 414 | while read -r line; do |
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| 415 | eval echo $line >> mail.txt ; |
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| 416 | done < ${libIGCM}/libIGCM_sys/${mailText} |
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[622] | 417 | |
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[806] | 418 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[922] | 419 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < mail.txt |
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[806] | 420 | elif [ -f ~/.forward ] ; then |
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[922] | 421 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < mail.txt |
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[806] | 422 | fi |
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[811] | 423 | |
---|
[806] | 424 | sleep 10 |
---|
[922] | 425 | rm -f mail.txt |
---|
[811] | 426 | |
---|
[623] | 427 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
---|
[622] | 428 | } |
---|
| 429 | |
---|
| 430 | #D-#================================================== |
---|
| 431 | #D-function IGCM_sys_Mkdir |
---|
| 432 | #D-* Purpose: Master locale mkdir command |
---|
| 433 | #D-* Examples: |
---|
| 434 | #D- |
---|
| 435 | function IGCM_sys_Mkdir { |
---|
[623] | 436 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
---|
| 437 | if ( $DEBUG_sys ) ; then |
---|
| 438 | echo "IGCM_sys_Mkdir :" $@ |
---|
| 439 | fi |
---|
| 440 | if [ ! -d ${1} ]; then |
---|
| 441 | \mkdir -p $1 |
---|
| 442 | if [ $? -gt 0 ] ; then |
---|
| 443 | echo "IGCM_sys_Mkdir : erreur." |
---|
| 444 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
---|
[622] | 445 | fi |
---|
[623] | 446 | fi |
---|
| 447 | # vérification : |
---|
| 448 | if [ ! -d ${1} ] ; then |
---|
| 449 | echo "IGCM_sys_Mkdir : erreur." |
---|
| 450 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
---|
| 451 | fi |
---|
| 452 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
---|
[622] | 453 | } |
---|
| 454 | |
---|
| 455 | #D-#================================================== |
---|
| 456 | #D-function IGCM_sys_MkdirArchive |
---|
| 457 | #D-* Purpose: Mkdir on Archive |
---|
| 458 | #D-* Examples: |
---|
| 459 | #D- |
---|
| 460 | function IGCM_sys_MkdirArchive { |
---|
[623] | 461 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
---|
| 462 | if ( $DEBUG_sys ) ; then |
---|
| 463 | echo "IGCM_sys_MkdirArchive :" $@ |
---|
| 464 | fi |
---|
| 465 | #- creation de repertoire sur le serveur fichier |
---|
| 466 | if [ ! -d ${1} ]; then |
---|
| 467 | \mkdir -p $1 |
---|
[811] | 468 | status=$? |
---|
| 469 | |
---|
| 470 | if [ ${status} -gt 0 ] ; then |
---|
| 471 | IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}" |
---|
[623] | 472 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
---|
[622] | 473 | fi |
---|
[623] | 474 | fi |
---|
| 475 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
---|
[622] | 476 | } |
---|
| 477 | |
---|
| 478 | #D-#================================================== |
---|
| 479 | #D-function IGCM_sys_MkdirWork |
---|
| 480 | #D-* Purpose: Mkdir on Work |
---|
| 481 | #D-* Examples: |
---|
| 482 | #D- |
---|
| 483 | function IGCM_sys_MkdirWork { |
---|
[623] | 484 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
---|
| 485 | if ( $DEBUG_sys ) ; then |
---|
| 486 | echo "IGCM_sys_MkdirWork :" $@ |
---|
| 487 | fi |
---|
| 488 | #- creation de repertoire sur le serveur fichier |
---|
| 489 | if [ ! -d ${1} ]; then |
---|
| 490 | \mkdir -p $1 |
---|
| 491 | if [ $? -gt 0 ] ; then |
---|
| 492 | echo "IGCM_sys_MkdirWork : erreur." |
---|
| 493 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
---|
[622] | 494 | fi |
---|
[623] | 495 | fi |
---|
| 496 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
---|
[622] | 497 | } |
---|
| 498 | |
---|
| 499 | #D-#================================================== |
---|
| 500 | #D-function IGCM_sys_Cd |
---|
| 501 | #D-* Purpose: master cd command |
---|
| 502 | #D-* Examples: |
---|
| 503 | #D- |
---|
| 504 | function IGCM_sys_Cd { |
---|
[623] | 505 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 506 | if ( $DEBUG_sys ) ; then |
---|
| 507 | echo "IGCM_sys_Cd :" $@ |
---|
| 508 | fi |
---|
| 509 | \cd $1 |
---|
| 510 | if [ $? -gt 0 ] ; then |
---|
| 511 | echo "IGCM_sys_Cd : erreur." |
---|
| 512 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 513 | fi |
---|
| 514 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[622] | 515 | } |
---|
| 516 | |
---|
| 517 | #D-#================================================== |
---|
| 518 | #D-function IGCM_sys_Chmod |
---|
| 519 | #D-* Purpose: Chmod |
---|
| 520 | #D-* Examples: |
---|
| 521 | #D- |
---|
| 522 | function IGCM_sys_Chmod { |
---|
[1057] | 523 | IGCM_debug_PushStack "IGCM_sys_Chmod" $@ |
---|
[623] | 524 | if ( $DEBUG_sys ) ; then |
---|
| 525 | echo "IGCM_sys_Chmod :" $@ |
---|
| 526 | fi |
---|
[809] | 527 | \chmod $@ |
---|
| 528 | if [ $? -gt 0 ] ; then |
---|
| 529 | echo "IGCM_sys_Chmod : erreur." |
---|
| 530 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[623] | 531 | fi |
---|
| 532 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[622] | 533 | } |
---|
| 534 | |
---|
| 535 | #D-#================================================== |
---|
| 536 | #D-function IGCM_sys_FileSize |
---|
| 537 | #D-* Purpose: Filesize |
---|
| 538 | #D-* Examples: |
---|
| 539 | #D- |
---|
| 540 | function IGCM_sys_FileSize { |
---|
[623] | 541 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[622] | 542 | |
---|
[623] | 543 | typeset sizeF |
---|
| 544 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 545 | if [ $? -gt 0 ] ; then |
---|
| 546 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 547 | fi |
---|
| 548 | eval ${2}=${sizeF[4]} |
---|
[622] | 549 | |
---|
[623] | 550 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[622] | 551 | } |
---|
| 552 | |
---|
| 553 | #D-#================================================== |
---|
| 554 | #D-function IGCM_sys_TestDir |
---|
| 555 | #D-* Purpose: Test Directory that must exists |
---|
| 556 | #D-* Examples: |
---|
| 557 | #D- |
---|
| 558 | function IGCM_sys_TestDir { |
---|
[623] | 559 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 560 | if ( $DEBUG_sys ) ; then |
---|
| 561 | echo "IGCM_sys_TestDir :" $@ |
---|
| 562 | fi |
---|
| 563 | typeset ExistFlag |
---|
| 564 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 565 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[622] | 566 | |
---|
[623] | 567 | return ${ExistFlag} |
---|
[622] | 568 | } |
---|
| 569 | |
---|
| 570 | #D-#================================================== |
---|
| 571 | #D-function IGCM_sys_TestDirArchive |
---|
| 572 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 573 | #D-* Examples: |
---|
| 574 | #D- |
---|
| 575 | function IGCM_sys_TestDirArchive { |
---|
[623] | 576 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 577 | if ( $DEBUG_sys ) ; then |
---|
| 578 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 579 | fi |
---|
| 580 | typeset ExistFlag |
---|
| 581 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 582 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
| 583 | return ${ExistFlag} |
---|
[622] | 584 | } |
---|
| 585 | |
---|
| 586 | #D-#================================================== |
---|
[623] | 587 | #D-function IGCM_sys_IsFileArchived |
---|
| 588 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 589 | #D-* Examples: |
---|
| 590 | #D- |
---|
| 591 | function IGCM_sys_IsFileArchived { |
---|
| 592 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 593 | if ( $DEBUG_sys ) ; then |
---|
| 594 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 595 | fi |
---|
| 596 | typeset IsArchivedFlag |
---|
[818] | 597 | IsArchivedFlag=$( [ X$( echo $@ | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
[623] | 598 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 599 | |
---|
| 600 | return ${IsArchivedFlag} |
---|
| 601 | } |
---|
| 602 | |
---|
| 603 | #D-#================================================== |
---|
[622] | 604 | #D-function IGCM_sys_TestFileArchive |
---|
| 605 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 606 | #D-* Examples: |
---|
| 607 | #D- |
---|
| 608 | function IGCM_sys_TestFileArchive { |
---|
[623] | 609 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 610 | typeset ExistFlag |
---|
| 611 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 612 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[622] | 613 | |
---|
[623] | 614 | return ${ExistFlag} |
---|
[622] | 615 | } |
---|
| 616 | |
---|
| 617 | #D-#================================================== |
---|
[623] | 618 | #D-function IGCM_sys_TestFileBuffer |
---|
| 619 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 620 | #D-* Examples: |
---|
| 621 | #D- |
---|
| 622 | function IGCM_sys_TestFileBuffer { |
---|
| 623 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 624 | typeset ExistFlag |
---|
| 625 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 626 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 627 | |
---|
| 628 | return ${ExistFlag} |
---|
| 629 | } |
---|
| 630 | |
---|
| 631 | #D-#================================================== |
---|
[622] | 632 | #D-function IGCM_sys_CountFileArchive |
---|
| 633 | #D-* Purpose: Count files on Archive filesystem |
---|
| 634 | #D-* Examples: |
---|
| 635 | #D- |
---|
| 636 | function IGCM_sys_CountFileArchive { |
---|
[623] | 637 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 638 | ls ${@} 2>/dev/null | wc -l |
---|
| 639 | if [ $? -gt 0 ] ; then |
---|
| 640 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 641 | fi |
---|
| 642 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[622] | 643 | } |
---|
| 644 | |
---|
| 645 | #D-#================================================== |
---|
[623] | 646 | #D-function IGCM_sys_CountFileBuffer |
---|
| 647 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 648 | #D-* Examples: |
---|
| 649 | #D- |
---|
| 650 | function IGCM_sys_CountFileBuffer { |
---|
| 651 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 652 | ls ${@} 2>/dev/null | wc -l |
---|
| 653 | if [ $? -gt 0 ] ; then |
---|
| 654 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 655 | fi |
---|
| 656 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 657 | } |
---|
| 658 | |
---|
| 659 | #D-#================================================== |
---|
[622] | 660 | #D-function IGCM_sys_Tree |
---|
| 661 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 662 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 663 | #D- |
---|
| 664 | function IGCM_sys_Tree { |
---|
[623] | 665 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 666 | if ( $DEBUG_sys ) ; then |
---|
| 667 | echo "IGCM_sys_Tree :" $@ |
---|
| 668 | fi |
---|
[622] | 669 | |
---|
[623] | 670 | \ls -lR ${@} |
---|
[622] | 671 | |
---|
[623] | 672 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[622] | 673 | } |
---|
| 674 | |
---|
| 675 | #D-#================================================== |
---|
| 676 | #D-function IGCM_sys_Tar |
---|
[623] | 677 | #D-* Purpose: master tar command |
---|
[622] | 678 | #D-* Examples: |
---|
| 679 | #D- |
---|
| 680 | function IGCM_sys_Tar { |
---|
[623] | 681 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 682 | if ( $DEBUG_sys ) ; then |
---|
| 683 | echo "IGCM_sys_Tar :" $@ |
---|
| 684 | fi |
---|
| 685 | \tar cf $@ |
---|
| 686 | if [ $? -gt 0 ] ; then |
---|
| 687 | echo "IGCM_sys_Tar : erreur." |
---|
| 688 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 689 | fi |
---|
| 690 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[622] | 691 | } |
---|
| 692 | |
---|
| 693 | #D-#================================================== |
---|
| 694 | #D-function IGCM_sys_UnTar |
---|
| 695 | #D-* Purpose: master un-tar command |
---|
| 696 | #D-* Examples: |
---|
| 697 | #D- |
---|
| 698 | function IGCM_sys_UnTar { |
---|
[623] | 699 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 700 | if ( $DEBUG_sys ) ; then |
---|
| 701 | echo "IGCM_sys_UnTar :" $@ |
---|
| 702 | fi |
---|
| 703 | \tar xvf $1 |
---|
| 704 | if [ $? -gt 0 ] ; then |
---|
| 705 | echo "IGCM_sys_UnTar : erreur." |
---|
| 706 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 707 | fi |
---|
| 708 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[622] | 709 | } |
---|
| 710 | |
---|
| 711 | #D-#================================================== |
---|
| 712 | #D-function IGCM_sys_Qsub |
---|
| 713 | #D-* Purpose: Qsub new job |
---|
| 714 | #D-* Examples: |
---|
| 715 | #D- |
---|
| 716 | function IGCM_sys_Qsub { |
---|
[623] | 717 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 718 | if ( $DEBUG_sys ) ; then |
---|
| 719 | echo "IGCM_sys_Qsub :" $@ |
---|
| 720 | fi |
---|
[811] | 721 | typeset options status |
---|
[923] | 722 | options="-o ${SUBMIT_DIR}/${Script_Output} -e ${SUBMIT_DIR}/${Script_Output}" |
---|
[622] | 723 | |
---|
[948] | 724 | /usr/bin/ccc_msub ${options} $1 > /tmp/out_command.$$ 2>&1 |
---|
[811] | 725 | status=$? |
---|
[948] | 726 | |
---|
| 727 | cat /tmp/out_command.$$ |
---|
[811] | 728 | if [ ${status} -gt 0 ] ; then |
---|
| 729 | IGCM_debug_Print 2 "IGCM_sys_Qsub ${options} $1 : error code ${status}" |
---|
[623] | 730 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
[948] | 731 | else |
---|
| 732 | JobID=$( gawk {'print $4'} /tmp/out_command.$$ ) |
---|
[623] | 733 | fi |
---|
| 734 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[622] | 735 | } |
---|
| 736 | |
---|
| 737 | #D-#================================================== |
---|
| 738 | #D-function IGCM_sys_QsubPost |
---|
| 739 | #D-* Purpose: Qsub new job on scalaire |
---|
| 740 | #D-* Examples: |
---|
| 741 | #D- |
---|
| 742 | function IGCM_sys_QsubPost { |
---|
[623] | 743 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 744 | if ( $DEBUG_sys ) ; then |
---|
| 745 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 746 | fi |
---|
[923] | 747 | typeset options status |
---|
[880] | 748 | MY_PROJECT=$(echo ${BRIDGE_MSUB_PROJECT:=${DEFAULT_PROJECT}} | cut -d@ -f1 ) |
---|
[923] | 749 | |
---|
[1062] | 750 | # EASIER TO DO THIS INSTEAD OF DUPLICATING libIGCM_sys_curie.ksh |
---|
| 751 | case $( hostname -s ) in |
---|
| 752 | curie*) |
---|
| 753 | options="-Q normal -A ${MY_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out";; |
---|
| 754 | airain*) |
---|
| 755 | options="-q ivybridge -A dsm -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out" |
---|
| 756 | esac |
---|
| 757 | |
---|
[948] | 758 | /usr/bin/ccc_msub ${options} ${libIGCM_POST}/$1.job > /tmp/out_command.$$ 2>&1 |
---|
[811] | 759 | status=$? |
---|
[948] | 760 | |
---|
| 761 | cat /tmp/out_command.$$ |
---|
[811] | 762 | if [ ${status} -gt 0 ] ; then |
---|
[923] | 763 | IGCM_debug_Print 2 "IGCM_sys_QsubPost ${options} ${libIGCM_POST}/$1.job : error code ${status}" |
---|
[623] | 764 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
[948] | 765 | else |
---|
| 766 | JobID=$( gawk {'print $4'} /tmp/out_command.$$ ) |
---|
[623] | 767 | fi |
---|
| 768 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[622] | 769 | } |
---|
| 770 | |
---|
| 771 | #D-************************* |
---|
[623] | 772 | #D- File transfer functions |
---|
[622] | 773 | #D-************************* |
---|
| 774 | #D- |
---|
| 775 | |
---|
| 776 | #D-#================================================== |
---|
| 777 | #D-function IGCM_sys_Rsync_out |
---|
| 778 | #D-* Purpose: treat return val of rsync |
---|
| 779 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 780 | #D- Error values and explanations can depend on your system version. |
---|
| 781 | function IGCM_sys_Rsync_out { |
---|
[719] | 782 | status=$1 |
---|
| 783 | if [ ! $status ] ; then |
---|
[623] | 784 | echo "rsync error !" |
---|
| 785 | fi |
---|
[622] | 786 | |
---|
[623] | 787 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 788 | case $status in |
---|
[623] | 789 | 0) return ;; |
---|
| 790 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 791 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 792 | return;; |
---|
| 793 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 794 | echo "Incompatibilité de protocole." |
---|
| 795 | return;; |
---|
| 796 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 797 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 798 | echo "répertoires" |
---|
| 799 | return;; |
---|
| 800 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 801 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 802 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 803 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 804 | echo "pas par le serveur a été spécifiée." |
---|
| 805 | return;; |
---|
| 806 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 807 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 808 | return;; |
---|
| 809 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 810 | echo "Erreur d'entrée sortie fichier" |
---|
| 811 | return;; |
---|
| 812 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 813 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 814 | return;; |
---|
| 815 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 816 | echo "Erreur avec les diagnostics du programme" |
---|
| 817 | return;; |
---|
| 818 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 819 | echo "Erreur dans le code IPC" |
---|
| 820 | return;; |
---|
| 821 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 822 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 823 | return;; |
---|
| 824 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 825 | echo "Une erreur retournée par waitpid()" |
---|
| 826 | return;; |
---|
| 827 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 828 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 829 | return;; |
---|
| 830 | 23) echo "" |
---|
| 831 | echo "Erreur fichier inexistant" |
---|
| 832 | return;; |
---|
| 833 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 834 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 835 | return;; |
---|
[719] | 836 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[623] | 837 | return;; |
---|
| 838 | esac |
---|
| 839 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 840 | case $status in |
---|
[623] | 841 | 0) return;; |
---|
| 842 | 1) echo "rsync error : Syntax or usage error " |
---|
| 843 | return;; |
---|
| 844 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 845 | return;; |
---|
| 846 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 847 | return;; |
---|
| 848 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 849 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 850 | echo "them; or an option was specified that is supported by the client and" |
---|
| 851 | echo "not by the server." |
---|
| 852 | return;; |
---|
| 853 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 854 | return;; |
---|
| 855 | 10) echo "rsync error : Error in socket I/O " |
---|
| 856 | return;; |
---|
| 857 | 11) echo "rsync error : Error in file I/O " |
---|
| 858 | return;; |
---|
| 859 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 860 | return;; |
---|
| 861 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 862 | return;; |
---|
| 863 | 14) echo "rsync error : Error in IPC code " |
---|
| 864 | return;; |
---|
| 865 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 866 | return;; |
---|
| 867 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 868 | return;; |
---|
| 869 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 870 | return;; |
---|
| 871 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 872 | return;; |
---|
| 873 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 874 | return;; |
---|
| 875 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 876 | return;; |
---|
[719] | 877 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[623] | 878 | return;; |
---|
| 879 | esac |
---|
| 880 | else |
---|
| 881 | echo "unknown language $MYLANG." |
---|
| 882 | return |
---|
| 883 | fi |
---|
[622] | 884 | } |
---|
| 885 | |
---|
| 886 | #D-#================================================== |
---|
| 887 | #D-function IGCM_sys_Miror_libIGCM |
---|
[811] | 888 | #D-* Purpose: Mirror libIGCM PATH and lib to frontend |
---|
[622] | 889 | #D-* Examples: |
---|
| 890 | #D- |
---|
| 891 | function IGCM_sys_Mirror_libIGCM { |
---|
[623] | 892 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 893 | if ( $DEBUG_sys ) ; then |
---|
| 894 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 895 | fi |
---|
[622] | 896 | |
---|
[773] | 897 | typeset status |
---|
[622] | 898 | |
---|
[623] | 899 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[622] | 900 | |
---|
[938] | 901 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > /tmp/out_command.$$ 2>&1 |
---|
| 902 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 903 | status=$? |
---|
[622] | 904 | |
---|
[715] | 905 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 906 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend." |
---|
[938] | 907 | cat /tmp/out_command.$$ |
---|
[623] | 908 | fi |
---|
| 909 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[622] | 910 | } |
---|
| 911 | |
---|
| 912 | #D-#================================================== |
---|
| 913 | #D-function IGCM_sys_Cp |
---|
| 914 | #D-* Purpose: generic cp |
---|
| 915 | #D-* Examples: |
---|
| 916 | #D- |
---|
| 917 | function IGCM_sys_Cp { |
---|
[623] | 918 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 919 | if ( $DEBUG_sys ) ; then |
---|
| 920 | echo "IGCM_sys_Cp :" $@ |
---|
| 921 | fi |
---|
[622] | 922 | |
---|
[715] | 923 | typeset status |
---|
[622] | 924 | |
---|
[938] | 925 | echo cp $@ > /tmp/out_command.$$ 2>&1 |
---|
| 926 | \cp $@ >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 927 | status=$? |
---|
[622] | 928 | |
---|
[715] | 929 | if [ ${status} -gt 0 ] ; then |
---|
| 930 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[938] | 931 | cat /tmp/out_command.$$ |
---|
[623] | 932 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 933 | else |
---|
[938] | 934 | \rm /tmp/out_command.$$ |
---|
[623] | 935 | fi |
---|
| 936 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[622] | 937 | } |
---|
| 938 | |
---|
| 939 | #D-#================================================== |
---|
| 940 | #D-function IGCM_sys_Rm |
---|
| 941 | #D-* Purpose: generic rm |
---|
| 942 | #D-* Examples: |
---|
| 943 | #D- |
---|
| 944 | function IGCM_sys_Rm { |
---|
[1057] | 945 | IGCM_debug_PushStack "IGCM_sys_Rm" $@ |
---|
[623] | 946 | if ( $DEBUG_sys ) ; then |
---|
| 947 | echo "IGCM_sys_Rm :" $@ |
---|
| 948 | fi |
---|
[622] | 949 | |
---|
[715] | 950 | typeset status |
---|
[622] | 951 | |
---|
[938] | 952 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
| 953 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 954 | status=$? |
---|
[622] | 955 | |
---|
[715] | 956 | if [ ${status} -gt 0 ] ; then |
---|
| 957 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[938] | 958 | cat /tmp/out_command.$$ |
---|
[623] | 959 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 960 | else |
---|
[938] | 961 | \rm /tmp/out_command.$$ |
---|
[623] | 962 | fi |
---|
| 963 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[622] | 964 | } |
---|
| 965 | |
---|
| 966 | #D-#================================================== |
---|
| 967 | #D-function IGCM_sys_RmRunDir |
---|
| 968 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 969 | #D- scheduler will do the job) |
---|
| 970 | #D-* Examples: |
---|
| 971 | #D- |
---|
| 972 | function IGCM_sys_RmRunDir { |
---|
[1057] | 973 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" $@ |
---|
[623] | 974 | if ( $DEBUG_sys ) ; then |
---|
| 975 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 976 | fi |
---|
[622] | 977 | |
---|
[715] | 978 | typeset status |
---|
[622] | 979 | |
---|
[938] | 980 | echo rm $@ > /tmp/out_command.$$ 2>&1 |
---|
| 981 | \rm $@ >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 982 | status=$? |
---|
[622] | 983 | |
---|
[715] | 984 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 985 | echo "IGCM_sys_RmRunDir : rm error code is ${status}." |
---|
[938] | 986 | cat /tmp/out_command.$$ |
---|
[623] | 987 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 988 | else |
---|
[938] | 989 | \rm /tmp/out_command.$$ |
---|
[623] | 990 | fi |
---|
| 991 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[622] | 992 | } |
---|
| 993 | |
---|
| 994 | #D-#================================================== |
---|
| 995 | #D-function IGCM_sys_Mv |
---|
| 996 | #D-* Purpose: generic move |
---|
| 997 | #D-* Examples: |
---|
| 998 | #D- |
---|
| 999 | function IGCM_sys_Mv { |
---|
[623] | 1000 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 1001 | if ( $DEBUG_sys ) ; then |
---|
| 1002 | echo "IGCM_sys_Mv :" $@ |
---|
| 1003 | fi |
---|
[622] | 1004 | |
---|
[623] | 1005 | if [ $DRYRUN = 0 ]; then |
---|
[622] | 1006 | |
---|
[715] | 1007 | typeset status |
---|
[623] | 1008 | |
---|
[938] | 1009 | echo mv $@ > /tmp/out_command.$$ 2>&1 |
---|
| 1010 | \mv $@ >> /tmp/out_command.$$ 2>&1 |
---|
[715] | 1011 | status=$? |
---|
[623] | 1012 | |
---|
[715] | 1013 | if [ ${status} -gt 0 ] ; then |
---|
| 1014 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[938] | 1015 | cat /tmp/out_command.$$ |
---|
[623] | 1016 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[622] | 1017 | else |
---|
[938] | 1018 | \rm /tmp/out_command.$$ |
---|
[622] | 1019 | fi |
---|
[623] | 1020 | fi |
---|
[622] | 1021 | |
---|
[623] | 1022 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[622] | 1023 | } |
---|
| 1024 | |
---|
| 1025 | #D-#================================================== |
---|
| 1026 | #D-function IGCM_sys_Put_Dir |
---|
| 1027 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 1028 | #D-* Examples: |
---|
| 1029 | #D- |
---|
| 1030 | function IGCM_sys_Put_Dir { |
---|
[623] | 1031 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 1032 | if ( $DEBUG_sys ) ; then |
---|
| 1033 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 1034 | fi |
---|
| 1035 | if [ $DRYRUN = 0 ]; then |
---|
| 1036 | if [ ! -d ${1} ] ; then |
---|
| 1037 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 1038 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 1039 | return |
---|
[622] | 1040 | fi |
---|
| 1041 | |
---|
[715] | 1042 | typeset status |
---|
[622] | 1043 | |
---|
[623] | 1044 | # Only if we use rsync |
---|
| 1045 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1046 | # |
---|
| 1047 | #USUAL WAY |
---|
[938] | 1048 | \cp -r $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[715] | 1049 | status=$? |
---|
[622] | 1050 | |
---|
[715] | 1051 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 1052 | IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}" |
---|
[938] | 1053 | cat /tmp/out_command.$$ |
---|
[623] | 1054 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[622] | 1055 | else |
---|
[938] | 1056 | \rm /tmp/out_command.$$ |
---|
[622] | 1057 | fi |
---|
[623] | 1058 | fi |
---|
| 1059 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[622] | 1060 | } |
---|
| 1061 | |
---|
| 1062 | #D-#================================================== |
---|
| 1063 | #D-function IGCM_sys_Get_Dir |
---|
[623] | 1064 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[622] | 1065 | #D-* Examples: |
---|
| 1066 | #D- |
---|
| 1067 | function IGCM_sys_Get_Dir { |
---|
[623] | 1068 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 1069 | if ( $DEBUG_sys ) ; then |
---|
| 1070 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 1071 | fi |
---|
| 1072 | if [ $DRYRUN = 0 ]; then |
---|
| 1073 | # if [ ! -d ${1} ] ; then |
---|
| 1074 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 1075 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 1076 | # return |
---|
| 1077 | # fi |
---|
[622] | 1078 | |
---|
[708] | 1079 | typeset NB_ESSAI DELAI status i |
---|
| 1080 | # number of tentative |
---|
| 1081 | NB_ESSAI=3 |
---|
| 1082 | # time delay between tentative |
---|
| 1083 | DELAI=2 |
---|
[622] | 1084 | |
---|
[676] | 1085 | # Only if we use rsync |
---|
| 1086 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1087 | # |
---|
[708] | 1088 | # USUAL WAY |
---|
| 1089 | # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command : |
---|
[713] | 1090 | ccc_hsm get -r $1 |
---|
[622] | 1091 | |
---|
[709] | 1092 | i=0 |
---|
[708] | 1093 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1094 | \cp -ur $1 $2 >> /tmp/out_command.$$ 2>&1 |
---|
[708] | 1095 | status=$? |
---|
[811] | 1096 | if [ ${status} -gt 0 ] ; then |
---|
[713] | 1097 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[708] | 1098 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 1099 | sleep $DELAI |
---|
| 1100 | else |
---|
| 1101 | break |
---|
| 1102 | fi |
---|
| 1103 | (( i = i + 1 )) |
---|
| 1104 | done |
---|
| 1105 | |
---|
| 1106 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1107 | echo "IGCM_sys_Get_Dir : error." |
---|
[938] | 1108 | cat /tmp/out_command.$$ |
---|
[623] | 1109 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[622] | 1110 | else |
---|
[938] | 1111 | \rm /tmp/out_command.$$ |
---|
[622] | 1112 | fi |
---|
[623] | 1113 | fi |
---|
| 1114 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[622] | 1115 | } |
---|
| 1116 | |
---|
| 1117 | #D-#================================================== |
---|
| 1118 | #D-function IGCM_sys_Get_Master |
---|
| 1119 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 1120 | #D-* Examples: |
---|
| 1121 | #D- |
---|
| 1122 | function IGCM_sys_Get_Master { |
---|
[623] | 1123 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 1124 | if ( $DEBUG_sys ) ; then |
---|
| 1125 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 1126 | fi |
---|
| 1127 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 1128 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[623] | 1129 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 1130 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 1131 | return |
---|
[622] | 1132 | fi |
---|
| 1133 | |
---|
[708] | 1134 | typeset NB_ESSAI DELAI status i |
---|
| 1135 | # number of tentative |
---|
| 1136 | NB_ESSAI=3 |
---|
| 1137 | # time delay between tentative |
---|
| 1138 | DELAI=2 |
---|
[622] | 1139 | |
---|
[709] | 1140 | i=0 |
---|
[708] | 1141 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1142 | \cp -urL $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[708] | 1143 | status=$? |
---|
| 1144 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1145 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[708] | 1146 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 1147 | sleep $DELAI |
---|
| 1148 | else |
---|
| 1149 | break |
---|
| 1150 | fi |
---|
| 1151 | (( i = i + 1 )) |
---|
| 1152 | done |
---|
[622] | 1153 | |
---|
[708] | 1154 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1155 | echo "IGCM_sys_Get_Master : error." |
---|
[938] | 1156 | cat /tmp/out_command.$$ |
---|
[623] | 1157 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[622] | 1158 | else |
---|
[938] | 1159 | \rm /tmp/out_command.$$ |
---|
[622] | 1160 | fi |
---|
[623] | 1161 | fi |
---|
| 1162 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[622] | 1163 | } |
---|
| 1164 | |
---|
[689] | 1165 | #==================================================== |
---|
| 1166 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1167 | if ( $MirrorlibIGCM ) ; then |
---|
| 1168 | IGCM_sys_Mirror_libIGCM |
---|
| 1169 | fi |
---|
| 1170 | |
---|
[622] | 1171 | #D-#================================================== |
---|
| 1172 | #D-function IGCM_sys_Put_Rest |
---|
[623] | 1173 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[622] | 1174 | #D- File and target directory must exist. |
---|
| 1175 | #D-* Examples: |
---|
| 1176 | #D- |
---|
| 1177 | function IGCM_sys_Put_Rest { |
---|
[623] | 1178 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1179 | if ( $DEBUG_sys ) ; then |
---|
| 1180 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1181 | fi |
---|
| 1182 | if [ $DRYRUN = 0 ]; then |
---|
| 1183 | if [ ! -f ${1} ] ; then |
---|
| 1184 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1185 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1186 | fi |
---|
| 1187 | |
---|
[715] | 1188 | typeset status |
---|
[623] | 1189 | # |
---|
| 1190 | # USUAL WAY |
---|
[938] | 1191 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[715] | 1192 | status=$? |
---|
[622] | 1193 | |
---|
[623] | 1194 | # #RSYNC WITH NETWORK SSH CALL |
---|
[938] | 1195 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > /tmp/out_command.$$ 2>&1 |
---|
| 1196 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> /tmp/out_command.$$ 2>&1 |
---|
[622] | 1197 | |
---|
[623] | 1198 | # #RSYNC WITH NFS USE |
---|
[938] | 1199 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > /tmp/out_command.$$ 2>&1 |
---|
| 1200 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> /tmp/out_command.$$ 2>&1 |
---|
[622] | 1201 | |
---|
[715] | 1202 | # status=$? |
---|
| 1203 | # IGCM_sys_Rsync_out $status |
---|
[622] | 1204 | |
---|
[938] | 1205 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
[715] | 1206 | # (( status=status+$? )) |
---|
[623] | 1207 | |
---|
[715] | 1208 | if [ ${status} -gt 0 ] ; then |
---|
| 1209 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[765] | 1210 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1211 | [ -f ${2} ] && ls -l ${2} |
---|
| 1212 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1213 | cat /tmp/out_command.$$ |
---|
[623] | 1214 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[622] | 1215 | else |
---|
[759] | 1216 | |
---|
| 1217 | if [ X${JobType} = XRUN ] ; then |
---|
| 1218 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1219 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1220 | fi |
---|
| 1221 | |
---|
[938] | 1222 | \rm /tmp/out_command.$$ |
---|
[622] | 1223 | fi |
---|
[623] | 1224 | fi |
---|
| 1225 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[622] | 1226 | } |
---|
| 1227 | |
---|
| 1228 | #D-#================================================== |
---|
[623] | 1229 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1230 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1231 | #D- File and target directory must exist. |
---|
| 1232 | #D-* Examples: |
---|
| 1233 | #D- |
---|
| 1234 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1235 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1236 | if ( $DEBUG_sys ) ; then |
---|
| 1237 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1238 | fi |
---|
| 1239 | if [ $DRYRUN = 0 ]; then |
---|
| 1240 | if [ ! -f ${1} ] ; then |
---|
| 1241 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1242 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1243 | fi |
---|
| 1244 | |
---|
[715] | 1245 | typeset status |
---|
[623] | 1246 | # |
---|
| 1247 | # USUAL WAY |
---|
[938] | 1248 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
[715] | 1249 | status=$? |
---|
[623] | 1250 | |
---|
[715] | 1251 | if [ ${status} -gt 0 ] ; then |
---|
| 1252 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[759] | 1253 | [ -f ${2} ] && ls -l ${2} |
---|
| 1254 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1255 | cat /tmp/out_command.$$ |
---|
[623] | 1256 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1257 | else |
---|
[759] | 1258 | |
---|
| 1259 | if [ X${JobType} = XRUN ] ; then |
---|
| 1260 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1261 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1262 | fi |
---|
| 1263 | |
---|
[938] | 1264 | \rm /tmp/out_command.$$ |
---|
[623] | 1265 | fi |
---|
| 1266 | fi |
---|
| 1267 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1268 | } |
---|
| 1269 | |
---|
| 1270 | #D-#================================================== |
---|
[801] | 1271 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1272 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1273 | #D-* Examples: |
---|
| 1274 | #D- |
---|
| 1275 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1276 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
[802] | 1277 | if [ $DRYRUN = 0 ]; then |
---|
[918] | 1278 | [ ! -f $( basename $1 ) ] && IGCM_sys_Get $1 . |
---|
[802] | 1279 | fi |
---|
[801] | 1280 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1281 | } |
---|
| 1282 | |
---|
| 1283 | #D-#================================================== |
---|
[622] | 1284 | #D-function IGCM_sys_Put_Out |
---|
[623] | 1285 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[622] | 1286 | #D-* Examples: |
---|
| 1287 | #D- |
---|
| 1288 | function IGCM_sys_Put_Out { |
---|
[623] | 1289 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1290 | if ( $DEBUG_sys ) ; then |
---|
| 1291 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1292 | fi |
---|
[667] | 1293 | |
---|
[711] | 1294 | typeset NB_ESSAI DELAI status i exist skip |
---|
[667] | 1295 | |
---|
| 1296 | # number of tentative |
---|
[668] | 1297 | NB_ESSAI=3 |
---|
[667] | 1298 | # time delay between tentative |
---|
[668] | 1299 | DELAI=2 |
---|
[667] | 1300 | |
---|
[623] | 1301 | if [ $DRYRUN = 0 ]; then |
---|
| 1302 | if [ ! -f ${1} ] ; then |
---|
| 1303 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1304 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1305 | return 1 |
---|
[622] | 1306 | fi |
---|
[623] | 1307 | # |
---|
| 1308 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1309 | # |
---|
[622] | 1310 | |
---|
[623] | 1311 | #===================================================== |
---|
| 1312 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1313 | #===================================================== |
---|
[622] | 1314 | |
---|
[623] | 1315 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1316 | #if [ $? -eq 0 ] ; then |
---|
| 1317 | # typeset WORKPATH FILEPATH |
---|
| 1318 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
| 1319 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 1320 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1321 | # # |
---|
| 1322 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1323 | #fi |
---|
[622] | 1324 | |
---|
[711] | 1325 | exist=false |
---|
| 1326 | skip=false |
---|
| 1327 | if [ -f $2 ] ; then |
---|
| 1328 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1329 | ccc_hsm get $2 |
---|
| 1330 | exist=true |
---|
| 1331 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1332 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1333 | skip=true |
---|
[667] | 1334 | else |
---|
[711] | 1335 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1336 | skip=false |
---|
[667] | 1337 | fi |
---|
[711] | 1338 | fi |
---|
| 1339 | # |
---|
| 1340 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1341 | IGCM_sys_Chmod u+w $2 |
---|
| 1342 | fi |
---|
[622] | 1343 | |
---|
[711] | 1344 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1345 | i=0 |
---|
[711] | 1346 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1037] | 1347 | if [ $( stat -c %d $1 ) -ne $( stat -c %d $( dirname $2 ) ) ] ; then |
---|
| 1348 | # USUAL WAY |
---|
| 1349 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
| 1350 | status=$? |
---|
| 1351 | else |
---|
| 1352 | # NOT SO USUAL WAY |
---|
| 1353 | \mv $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
| 1354 | status=$? |
---|
| 1355 | fi |
---|
[711] | 1356 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1357 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[711] | 1358 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
[765] | 1359 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1360 | [ -f ${2} ] && ls -l ${2} |
---|
| 1361 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[711] | 1362 | sleep $DELAI |
---|
| 1363 | else |
---|
| 1364 | break |
---|
| 1365 | fi |
---|
| 1366 | (( i = i + 1 )) |
---|
| 1367 | done |
---|
| 1368 | fi |
---|
| 1369 | |
---|
[623] | 1370 | # #RSYNC WITH NETWORK SSH CALL |
---|
[938] | 1371 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > /tmp/out_command.$$ 2>&1 |
---|
| 1372 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> /tmp/out_command.$$ 2>&1 |
---|
[622] | 1373 | |
---|
[623] | 1374 | # #RSYNC WITH NFS USE |
---|
[938] | 1375 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > /tmp/out_command.$$ 2>&1 |
---|
| 1376 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> /tmp/out_command.$$ 2>&1 |
---|
[622] | 1377 | |
---|
[711] | 1378 | # status=$? |
---|
| 1379 | # IGCM_sys_Rsync_out $status |
---|
[622] | 1380 | |
---|
[938] | 1381 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
[711] | 1382 | # (( status=status+$? )) |
---|
[622] | 1383 | |
---|
[711] | 1384 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1385 | echo "IGCM_sys_Put_Out : error." |
---|
[765] | 1386 | [ -f ${1} ] && ls -l ${1} |
---|
[759] | 1387 | [ -f ${2} ] && ls -l ${2} |
---|
| 1388 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1389 | cat /tmp/out_command.$$ |
---|
[623] | 1390 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[622] | 1391 | else |
---|
[759] | 1392 | |
---|
| 1393 | if [ X${JobType} = XRUN ] ; then |
---|
| 1394 | if [ X${3} = X ] ; then |
---|
| 1395 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1396 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1397 | fi |
---|
| 1398 | fi |
---|
| 1399 | |
---|
[938] | 1400 | \rm /tmp/out_command.$$ |
---|
[622] | 1401 | fi |
---|
[623] | 1402 | fi |
---|
| 1403 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1404 | return 0 |
---|
[622] | 1405 | } |
---|
| 1406 | |
---|
| 1407 | #D-#================================================== |
---|
[623] | 1408 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1409 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1410 | #D-* Examples: |
---|
| 1411 | #D- |
---|
| 1412 | function IGCM_sys_PutBuffer_Out { |
---|
| 1413 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1414 | if ( $DEBUG_sys ) ; then |
---|
| 1415 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1416 | fi |
---|
[711] | 1417 | |
---|
[773] | 1418 | typeset NB_ESSAI DELAI status i exist skip |
---|
[711] | 1419 | |
---|
| 1420 | # number of tentative |
---|
| 1421 | NB_ESSAI=3 |
---|
| 1422 | # time delay between tentative |
---|
| 1423 | DELAI=2 |
---|
| 1424 | |
---|
[623] | 1425 | if [ $DRYRUN = 0 ]; then |
---|
| 1426 | if [ ! -f ${1} ] ; then |
---|
| 1427 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1428 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1429 | return 1 |
---|
| 1430 | fi |
---|
| 1431 | # |
---|
| 1432 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1433 | # |
---|
| 1434 | |
---|
[711] | 1435 | exist=false |
---|
| 1436 | skip=false |
---|
| 1437 | if [ -f $2 ] ; then |
---|
| 1438 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1439 | exist=true |
---|
| 1440 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1441 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
[811] | 1442 | status=0 |
---|
[711] | 1443 | skip=true |
---|
| 1444 | else |
---|
| 1445 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1446 | skip=false |
---|
| 1447 | fi |
---|
| 1448 | fi |
---|
[623] | 1449 | # |
---|
[711] | 1450 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1451 | IGCM_sys_Chmod u+w $2 |
---|
| 1452 | fi |
---|
[623] | 1453 | |
---|
[711] | 1454 | if [ X${skip} = Xfalse ] ; then |
---|
| 1455 | i=0 |
---|
| 1456 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1037] | 1457 | if [ $( stat -c %d $1 ) -ne $( stat -c %d $( dirname $2 ) ) ] ; then |
---|
| 1458 | # USUAL WAY |
---|
| 1459 | \cp $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
| 1460 | status=$? |
---|
| 1461 | else |
---|
| 1462 | # NOT SO USUAL WAY |
---|
| 1463 | \mv $1 $2 > /tmp/out_command.$$ 2>&1 |
---|
| 1464 | status=$? |
---|
| 1465 | fi |
---|
[711] | 1466 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1467 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[711] | 1468 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
[759] | 1469 | [ -f ${2} ] && ls -l ${2} |
---|
| 1470 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[711] | 1471 | sleep $DELAI |
---|
| 1472 | else |
---|
| 1473 | break |
---|
| 1474 | fi |
---|
| 1475 | (( i = i + 1 )) |
---|
| 1476 | done |
---|
| 1477 | fi |
---|
| 1478 | |
---|
| 1479 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1480 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
[759] | 1481 | [ -f ${2} ] && ls -l ${2} |
---|
| 1482 | [ -f ${2}/${1} ] && ls -l ${2}/${1} |
---|
[938] | 1483 | cat /tmp/out_command.$$ |
---|
[623] | 1484 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1485 | else |
---|
[759] | 1486 | |
---|
| 1487 | if [ X${JobType} = XRUN ] ; then |
---|
| 1488 | if [ X${3} = X ] ; then |
---|
| 1489 | [ -f ${2} ] && IGCM_sys_Chmod 444 ${2} |
---|
| 1490 | [ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1} |
---|
| 1491 | fi |
---|
| 1492 | fi |
---|
| 1493 | |
---|
[938] | 1494 | \rm /tmp/out_command.$$ |
---|
[623] | 1495 | fi |
---|
| 1496 | fi |
---|
| 1497 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1498 | return 0 |
---|
| 1499 | } |
---|
| 1500 | |
---|
| 1501 | #D-#================================================== |
---|
[622] | 1502 | #D-function IGCM_sys_Get |
---|
| 1503 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1504 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1505 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1506 | function IGCM_sys_Get { |
---|
[623] | 1507 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[622] | 1508 | |
---|
[773] | 1509 | typeset DEST dm_liste target file_work |
---|
[667] | 1510 | typeset NB_ESSAI DELAI status i |
---|
[622] | 1511 | |
---|
[623] | 1512 | if ( $DEBUG_sys ) ; then |
---|
| 1513 | echo "IGCM_sys_Get :" $@ |
---|
| 1514 | fi |
---|
[667] | 1515 | |
---|
| 1516 | # number of tentative |
---|
[668] | 1517 | NB_ESSAI=3 |
---|
[667] | 1518 | # time delay between tentative |
---|
[668] | 1519 | DELAI=2 |
---|
[667] | 1520 | |
---|
[623] | 1521 | if [ $DRYRUN -le 2 ]; then |
---|
| 1522 | if [ X${1} = X'/l' ] ; then |
---|
| 1523 | eval set +A dm_liste \${${2}} |
---|
| 1524 | else |
---|
| 1525 | eval set +A dm_liste ${1} |
---|
[622] | 1526 | fi |
---|
[623] | 1527 | eval DEST=\${${#}} |
---|
[622] | 1528 | |
---|
[623] | 1529 | #===================================================== |
---|
| 1530 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1531 | #===================================================== |
---|
[622] | 1532 | |
---|
[623] | 1533 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1534 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1535 | #if [ $? -eq 0 ] ; then |
---|
[785] | 1536 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1537 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1538 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1539 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1540 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1541 | # return |
---|
| 1542 | # fi |
---|
[623] | 1543 | #fi |
---|
[622] | 1544 | |
---|
[938] | 1545 | ccc_hsm get ${dm_liste[*]} > /tmp/out_command.$$ 2>&1 |
---|
[715] | 1546 | status=$? |
---|
| 1547 | if [ ${status} -gt 0 ] ; then |
---|
| 1548 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[938] | 1549 | cat /tmp/out_command.$$ |
---|
[623] | 1550 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1551 | fi |
---|
[622] | 1552 | |
---|
[715] | 1553 | #if [ ${status} -gt 0 ] ; then |
---|
[938] | 1554 | # if [ ! "X$( grep "Lost dmusrcmd connection" /tmp/out_command.$$ )" = "X" ] ; then |
---|
| 1555 | # cat /tmp/out_command.$$ |
---|
[785] | 1556 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1557 | # sleep 30 |
---|
| 1558 | # echo "We try another time" |
---|
[938] | 1559 | ## dmget ${dm_liste[*]} > /tmp/out_command.$$ 2>&1 |
---|
| 1560 | # ccc_hsm get ${dm_liste[*]} > /tmp/out_command.$$ 2>&1 |
---|
[785] | 1561 | # status=$? |
---|
| 1562 | # if [ ${status} -gt 0 ] ; then |
---|
| 1563 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
[938] | 1564 | # cat /tmp/out_command.$$ |
---|
[785] | 1565 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[623] | 1566 | # fi |
---|
[785] | 1567 | # else |
---|
| 1568 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
[938] | 1569 | # cat /tmp/out_command.$$ |
---|
[785] | 1570 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1571 | # fi |
---|
[623] | 1572 | #fi |
---|
[622] | 1573 | |
---|
[719] | 1574 | # #RSYNC WITH NETWORK SSH CALL |
---|
[938] | 1575 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > /tmp/out_command.$$ 2>&1 |
---|
| 1576 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1577 | |
---|
| 1578 | # #RSYNC WITH NFS USE |
---|
[938] | 1579 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > /tmp/out_command.$$ 2>&1 |
---|
| 1580 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1581 | |
---|
| 1582 | # status=$? |
---|
| 1583 | # IGCM_sys_Rsync_out $status |
---|
| 1584 | |
---|
[938] | 1585 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk /tmp/out_command.$$ |
---|
[719] | 1586 | # (( status=status+$? )) |
---|
| 1587 | |
---|
[623] | 1588 | #USUAL WAY |
---|
| 1589 | if [ X${1} = X'/l' ] ; then |
---|
| 1590 | for target in ${dm_liste[*]} ; do |
---|
| 1591 | local_file=$( basename ${target} ) |
---|
[668] | 1592 | # test if the target file is present before the loop |
---|
| 1593 | IGCM_sys_TestFileArchive ${target} |
---|
[715] | 1594 | status=$? |
---|
| 1595 | if [ ${status} -gt 0 ] ; then |
---|
[701] | 1596 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[668] | 1597 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1598 | else |
---|
[719] | 1599 | i=0 |
---|
[668] | 1600 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1037] | 1601 | #if [ X${DoLink} = Xtrue ] ; then |
---|
| 1602 | # \ln -s ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
| 1603 | # status=$? |
---|
| 1604 | # else |
---|
| 1605 | # \cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
| 1606 | # status=$? |
---|
| 1607 | #fi |
---|
| 1608 | \ln -s ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
[668] | 1609 | status=$? |
---|
| 1610 | if [ ${status} -gt 0 ]; then |
---|
[713] | 1611 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
[676] | 1612 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1613 | sleep $DELAI |
---|
[668] | 1614 | else |
---|
[676] | 1615 | break |
---|
[668] | 1616 | fi |
---|
| 1617 | (( i = i + 1 )) |
---|
| 1618 | done |
---|
[719] | 1619 | if [ ${status} -gt 0 ] ; then |
---|
| 1620 | echo "IGCM_sys_Get : error" |
---|
[938] | 1621 | cat /tmp/out_command.$$ |
---|
| 1622 | \rm /tmp/out_command.$$ |
---|
[719] | 1623 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1624 | else |
---|
[938] | 1625 | \rm /tmp/out_command.$$ |
---|
[719] | 1626 | fi |
---|
[668] | 1627 | fi |
---|
[623] | 1628 | done |
---|
| 1629 | else |
---|
[719] | 1630 | i=0 |
---|
| 1631 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1632 | \cp ${dm_liste} ${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1633 | status=$? |
---|
| 1634 | if [ ${status} -gt 0 ]; then |
---|
| 1635 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1636 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1637 | sleep $DELAI |
---|
| 1638 | else |
---|
| 1639 | break |
---|
| 1640 | fi |
---|
| 1641 | (( i = i + 1 )) |
---|
| 1642 | done |
---|
| 1643 | if [ ${status} -gt 0 ] ; then |
---|
| 1644 | echo "IGCM_sys_Get : error" |
---|
[938] | 1645 | cat /tmp/out_command.$$ |
---|
| 1646 | \rm /tmp/out_command.$$ |
---|
[719] | 1647 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1648 | else |
---|
[938] | 1649 | \rm /tmp/out_command.$$ |
---|
[719] | 1650 | fi |
---|
[623] | 1651 | fi |
---|
| 1652 | fi |
---|
| 1653 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1654 | } |
---|
[622] | 1655 | |
---|
[623] | 1656 | #D-#================================================== |
---|
| 1657 | #D-function IGCM_sys_GetBuffer |
---|
| 1658 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1659 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1660 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1661 | function IGCM_sys_GetBuffer { |
---|
| 1662 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1663 | |
---|
[773] | 1664 | typeset DEST buf_liste target file_work |
---|
[719] | 1665 | typeset NB_ESSAI DELAI status i |
---|
[623] | 1666 | |
---|
| 1667 | if ( $DEBUG_sys ) ; then |
---|
| 1668 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1669 | fi |
---|
[719] | 1670 | |
---|
| 1671 | # number of tentative |
---|
| 1672 | NB_ESSAI=3 |
---|
| 1673 | # time delay between tentative |
---|
| 1674 | DELAI=2 |
---|
| 1675 | |
---|
[623] | 1676 | if [ $DRYRUN -le 2 ]; then |
---|
| 1677 | if [ X${1} = X'/l' ] ; then |
---|
| 1678 | eval set +A buf_liste \${${2}} |
---|
[622] | 1679 | else |
---|
[623] | 1680 | eval set +A buf_liste ${1} |
---|
[622] | 1681 | fi |
---|
[623] | 1682 | eval DEST=\${${#}} |
---|
| 1683 | |
---|
| 1684 | #USUAL WAY |
---|
| 1685 | if [ X${1} = X'/l' ] ; then |
---|
| 1686 | for target in ${buf_liste[*]} ; do |
---|
| 1687 | local_file=$( basename ${target} ) |
---|
[719] | 1688 | i=0 |
---|
| 1689 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1690 | \cp ${target} ${DEST}/${local_file} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1691 | status=$? |
---|
| 1692 | if [ ${status} -gt 0 ]; then |
---|
| 1693 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1694 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1695 | sleep $DELAI |
---|
| 1696 | else |
---|
| 1697 | break |
---|
| 1698 | fi |
---|
| 1699 | (( i = i + 1 )) |
---|
| 1700 | done |
---|
| 1701 | if [ ${status} -gt 0 ] ; then |
---|
| 1702 | echo "IGCM_sys_Get : error" |
---|
[938] | 1703 | cat /tmp/out_command.$$ |
---|
| 1704 | \rm /tmp/out_command.$$ |
---|
[719] | 1705 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1706 | else |
---|
[938] | 1707 | \rm /tmp/out_command.$$ |
---|
[719] | 1708 | fi |
---|
[623] | 1709 | done |
---|
| 1710 | else |
---|
[719] | 1711 | i=0 |
---|
| 1712 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 1713 | \cp ${buf_liste} ${DEST} >> /tmp/out_command.$$ 2>&1 |
---|
[719] | 1714 | status=$? |
---|
| 1715 | if [ ${status} -gt 0 ]; then |
---|
| 1716 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1717 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1718 | sleep $DELAI |
---|
| 1719 | else |
---|
| 1720 | break |
---|
| 1721 | fi |
---|
| 1722 | (( i = i + 1 )) |
---|
| 1723 | done |
---|
| 1724 | if [ ${status} -gt 0 ] ; then |
---|
| 1725 | echo "IGCM_sys_Get : error" |
---|
[938] | 1726 | cat /tmp/out_command.$$ |
---|
| 1727 | \rm /tmp/out_command.$$ |
---|
[719] | 1728 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1729 | else |
---|
[938] | 1730 | \rm /tmp/out_command.$$ |
---|
[719] | 1731 | fi |
---|
[623] | 1732 | fi |
---|
| 1733 | fi |
---|
| 1734 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
[622] | 1735 | } |
---|
| 1736 | |
---|
| 1737 | #D-#================================================== |
---|
| 1738 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1739 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1740 | #D-* Examples: |
---|
| 1741 | #D- |
---|
| 1742 | function IGCM_sys_GetDate_FichWork { |
---|
[623] | 1743 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1744 | if ( $DEBUG_sys ) ; then |
---|
| 1745 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1746 | fi |
---|
[955] | 1747 | |
---|
| 1748 | if [ $# -ge 3 ] ; then |
---|
| 1749 | mode=$3 |
---|
| 1750 | TimeStyle=$4 |
---|
| 1751 | else |
---|
| 1752 | mode="default" |
---|
| 1753 | TimeStyle="%Y%m%d%H%M%S" |
---|
| 1754 | fi |
---|
| 1755 | |
---|
[623] | 1756 | typeset dateF |
---|
[955] | 1757 | set +A dateF -- $( ls -l --full-time --time-style=+"${TimeStyle}" ${1} ) |
---|
[623] | 1758 | |
---|
[955] | 1759 | case $mode in |
---|
| 1760 | "default") |
---|
| 1761 | eval ${2}=${dateF[5]} |
---|
| 1762 | ;; |
---|
| 1763 | "SplitFields") |
---|
| 1764 | eval ${2}="${dateF[5]}\ ${dateF[6]}" |
---|
| 1765 | ;; |
---|
| 1766 | esac |
---|
| 1767 | |
---|
| 1768 | |
---|
[773] | 1769 | # donne la date filesys d'un fichier sur la machine work |
---|
[623] | 1770 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[622] | 1771 | } |
---|
| 1772 | |
---|
| 1773 | #D-#================================================== |
---|
| 1774 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[623] | 1775 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[622] | 1776 | #D-* Examples: |
---|
| 1777 | #D- |
---|
| 1778 | function IGCM_sys_GetDate_FichArchive { |
---|
[623] | 1779 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1780 | if ( $DEBUG_sys ) ; then |
---|
| 1781 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1782 | fi |
---|
| 1783 | typeset dateF |
---|
| 1784 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1785 | eval ${2}=${dateF[5]} |
---|
| 1786 | |
---|
| 1787 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1788 | } |
---|
| 1789 | |
---|
| 1790 | #D-#================================================== |
---|
[835] | 1791 | #D-function IGCM_sys_GetDate_Monitoring |
---|
| 1792 | #D-* Purpose: get the last year for which the monitoring has been computed |
---|
| 1793 | #D-* Examples: |
---|
| 1794 | #D- |
---|
| 1795 | function IGCM_sys_GetDate_Monitoring { |
---|
| 1796 | IGCM_debug_PushStack "IGCM_sys_GetDate_Monitoring" $@ |
---|
| 1797 | if ( $DEBUG_sys ) ; then |
---|
| 1798 | echo "IGCM_sys_GetDate_Monitoring :" $@ |
---|
| 1799 | fi |
---|
| 1800 | |
---|
| 1801 | eval ${2}=$( cdo showyear ${1} 2> /dev/null | gawk '{ print $NF }' ) |
---|
| 1802 | |
---|
| 1803 | IGCM_debug_PopStack "IGCM_sys_GetDate_Monitoring" |
---|
| 1804 | } |
---|
| 1805 | |
---|
| 1806 | #D-#================================================== |
---|
[623] | 1807 | #D-function IGCM_sys_Dods_Rm |
---|
| 1808 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1809 | #D-* Examples: |
---|
| 1810 | #D- |
---|
| 1811 | function IGCM_sys_Dods_Rm { |
---|
| 1812 | if ( $DEBUG_sys ) ; then |
---|
| 1813 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1814 | fi |
---|
[715] | 1815 | typeset status |
---|
[623] | 1816 | if [ $DRYRUN = 0 ]; then |
---|
| 1817 | |
---|
| 1818 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1819 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1820 | # echo "Nothing has been done." |
---|
| 1821 | # return |
---|
| 1822 | # fi |
---|
| 1823 | |
---|
[649] | 1824 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[715] | 1825 | status=$? |
---|
[623] | 1826 | |
---|
[785] | 1827 | # if [ ${status} -gt 0 ] ; then |
---|
| 1828 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1829 | # cat out_dods_rm |
---|
| 1830 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
| 1831 | # else |
---|
| 1832 | # rm out_dods_rm |
---|
| 1833 | # fi |
---|
[623] | 1834 | |
---|
| 1835 | fi |
---|
[715] | 1836 | return $status |
---|
[623] | 1837 | } |
---|
| 1838 | |
---|
| 1839 | #D-#================================================== |
---|
| 1840 | #D-function IGCM_sys_Dods_Cp |
---|
| 1841 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1842 | #D-* Examples: |
---|
| 1843 | #D- |
---|
| 1844 | function IGCM_sys_Dods_Cp { |
---|
| 1845 | if ( $DEBUG_sys ) ; then |
---|
| 1846 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1847 | fi |
---|
[715] | 1848 | typeset status |
---|
[623] | 1849 | if [ $DRYRUN = 0 ]; then |
---|
| 1850 | |
---|
| 1851 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1852 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1853 | # echo "Nothing has been done." |
---|
| 1854 | # return |
---|
| 1855 | # fi |
---|
| 1856 | |
---|
[649] | 1857 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[715] | 1858 | status=$? |
---|
[623] | 1859 | |
---|
[715] | 1860 | # if [ ${status} -gt 0 ] ; then |
---|
[623] | 1861 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1862 | # cat out_dods_cp |
---|
| 1863 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1864 | # else |
---|
| 1865 | # rm out_dods_cp |
---|
| 1866 | # fi |
---|
| 1867 | |
---|
| 1868 | fi |
---|
[715] | 1869 | return $status |
---|
[623] | 1870 | } |
---|
| 1871 | |
---|
| 1872 | #D-#================================================== |
---|
| 1873 | #D-function IGCM_sys_Put_Dods |
---|
| 1874 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1875 | #D-* Examples: |
---|
| 1876 | #D- |
---|
| 1877 | function IGCM_sys_Put_Dods { |
---|
| 1878 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1879 | if ( $DEBUG_sys ) ; then |
---|
| 1880 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1881 | fi |
---|
[711] | 1882 | #set -vx |
---|
[715] | 1883 | typeset status |
---|
[623] | 1884 | if [ $DRYRUN = 0 ]; then |
---|
| 1885 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1886 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1887 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1888 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
| 1889 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1890 | return |
---|
[622] | 1891 | fi |
---|
[623] | 1892 | |
---|
| 1893 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1894 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1895 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1896 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1897 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1898 | return |
---|
| 1899 | fi |
---|
| 1900 | # |
---|
| 1901 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1902 | cd ${R_SAVE} |
---|
| 1903 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1904 | cd ${R_FIGR} |
---|
| 1905 | fi |
---|
| 1906 | |
---|
| 1907 | IGCM_sys_Dods_Rm ${1} |
---|
| 1908 | IGCM_sys_Dods_Cp ${1} |
---|
[715] | 1909 | status=0 |
---|
[623] | 1910 | |
---|
[715] | 1911 | if [ ${status} -gt 0 ] ; then |
---|
[623] | 1912 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1913 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1914 | fi |
---|
| 1915 | fi |
---|
| 1916 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[622] | 1917 | } |
---|
| 1918 | |
---|
| 1919 | ############################################################## |
---|
| 1920 | # REBUILD OPERATOR |
---|
| 1921 | |
---|
[811] | 1922 | #D-#================================================== |
---|
| 1923 | #D-function IGCM_sys_rebuild |
---|
| 1924 | #D-* Purpose: rebuild parallel files |
---|
| 1925 | #D-* Examples: |
---|
| 1926 | #D- |
---|
[622] | 1927 | function IGCM_sys_rebuild { |
---|
[1057] | 1928 | IGCM_debug_PushStack "IGCM_sys_rebuild" $@ |
---|
[623] | 1929 | if ( $DEBUG_sys ) ; then |
---|
| 1930 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1931 | fi |
---|
[716] | 1932 | |
---|
[734] | 1933 | typeset NB_ESSAI DELAI status i firstArg |
---|
[716] | 1934 | # number of tentative |
---|
| 1935 | NB_ESSAI=3 |
---|
| 1936 | # time delay between tentative |
---|
| 1937 | DELAI=2 |
---|
| 1938 | |
---|
| 1939 | i=0 |
---|
| 1940 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[977] | 1941 | ~p86ipsl/rebuild/src_X64_CURIE/modipsl_v2_2_2_netcdf4.2/bin/rebuild -f -o $@ > /tmp/out_command.$$ 2>&1 |
---|
[716] | 1942 | status=$? |
---|
| 1943 | if [ ${status} -gt 0 ] ; then |
---|
| 1944 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
[938] | 1945 | cat /tmp/out_command.$$ |
---|
| 1946 | \rm /tmp/out_command.$$ |
---|
[716] | 1947 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1948 | firstArg=${1} |
---|
| 1949 | \rm ${firstArg} |
---|
[733] | 1950 | sleep $DELAI |
---|
[716] | 1951 | else |
---|
[938] | 1952 | \rm /tmp/out_command.$$ |
---|
[716] | 1953 | break |
---|
| 1954 | fi |
---|
| 1955 | (( i = i + 1 )) |
---|
| 1956 | done |
---|
| 1957 | |
---|
[725] | 1958 | if [ ${status} -gt 0 ] ; then |
---|
[773] | 1959 | echo "IGCM_sys_rebuild : rebuild error code is ${status}" |
---|
[623] | 1960 | IGCM_debug_Exit "rebuild" |
---|
| 1961 | fi |
---|
[622] | 1962 | |
---|
[623] | 1963 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[622] | 1964 | } |
---|
| 1965 | |
---|
[811] | 1966 | #D-#================================================== |
---|
| 1967 | #D-function IGCM_sys_rebuild_station |
---|
[912] | 1968 | #D-* Purpose: rebuild parallel files describing station |
---|
[811] | 1969 | #D-* Examples: |
---|
| 1970 | #D- |
---|
[697] | 1971 | function IGCM_sys_rebuild_station { |
---|
[1057] | 1972 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" $@ |
---|
[697] | 1973 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1974 | if ( $DEBUG_sys ) ; then |
---|
| 1975 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1976 | fi |
---|
| 1977 | list_opt=$@ |
---|
| 1978 | |
---|
[773] | 1979 | # Invert Axis : t,x -> x,t |
---|
[697] | 1980 | # t,pres,x -> x,t,pres |
---|
| 1981 | # So that we can concatenate along x |
---|
| 1982 | i=0 |
---|
| 1983 | for file_in in ${list_opt} ; do |
---|
| 1984 | (( i = i + 1)) |
---|
| 1985 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
[1046] | 1986 | # detect time counter and do the job only if present |
---|
| 1987 | var_unlim=$(ncdump -h ${file_in} | grep UNLIMITED | cut -d ' ' -f 1) |
---|
| 1988 | if [ X${var_unlim} = Xtime_counter ] ; then |
---|
| 1989 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1990 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1991 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1992 | fi |
---|
[697] | 1993 | done |
---|
| 1994 | |
---|
| 1995 | # Concatenate |
---|
| 1996 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1997 | |
---|
| 1998 | # Re-ivert file |
---|
| 1999 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 2000 | |
---|
[922] | 2001 | # Station re-ordering is too expansive to be run within libIGCM |
---|
[697] | 2002 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 2003 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 2004 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 2005 | # BEGIN reordering |
---|
| 2006 | |
---|
| 2007 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 2008 | # We isolate this in the code below: |
---|
| 2009 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 2010 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 2011 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 2012 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 2013 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 2014 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 2015 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 2016 | # 1 40 4.999999999999995 51.97183098591550 |
---|
[1056] | 2017 | |
---|
[697] | 2018 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 2019 | # typeset -Z4 j4 |
---|
| 2020 | # typeset -Z3 j3 |
---|
| 2021 | |
---|
| 2022 | # unset list_opt |
---|
| 2023 | # set +A list_opt $@ |
---|
| 2024 | |
---|
| 2025 | # Filename after rebuild |
---|
| 2026 | # file_out=${list_opt[0]} |
---|
| 2027 | # Prefix of output files |
---|
| 2028 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 2029 | # Number of procs |
---|
| 2030 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 2031 | |
---|
| 2032 | # iProc=0 |
---|
| 2033 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 2034 | # Array containing Station as a number |
---|
| 2035 | # unset proc_stn |
---|
[912] | 2036 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | gawk ' {print $2}' ) |
---|
[697] | 2037 | # Number of stations produced by processor proc |
---|
| 2038 | # stationLast=${#proc_stn[*]} |
---|
| 2039 | # Proc number on 4 digits |
---|
| 2040 | # j4=${iProc} |
---|
| 2041 | # Init |
---|
| 2042 | # iStation=0 |
---|
| 2043 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 2044 | # Station number on 3 digits |
---|
| 2045 | # j3=${proc_stn[${iStation}]} |
---|
| 2046 | # Extract station |
---|
[773] | 2047 | # Invert Axis : t,x -> x,t |
---|
[697] | 2048 | # t,pres,x -> x,t,pres |
---|
| 2049 | # So that we can concatenate along x |
---|
| 2050 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 2051 | # (( iStation = iStation + 1 )) |
---|
| 2052 | # done |
---|
| 2053 | # (( iProc = iProc + 1 )) |
---|
| 2054 | # done |
---|
| 2055 | |
---|
| 2056 | # Concatenate all station along x |
---|
| 2057 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 2058 | |
---|
| 2059 | # Re-invert file |
---|
| 2060 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 2061 | |
---|
| 2062 | # END reordering |
---|
| 2063 | |
---|
| 2064 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 2065 | } |
---|
| 2066 | |
---|
[622] | 2067 | ############################################################ |
---|
| 2068 | # Activate Running Environnment Variables |
---|
| 2069 | |
---|
[811] | 2070 | #D-#================================================== |
---|
| 2071 | #D-function IGCM_sys_desactiv_variables |
---|
| 2072 | #D-* Purpose: set environement variables prior to execution |
---|
| 2073 | #D-* Examples: |
---|
| 2074 | #D- |
---|
[622] | 2075 | function IGCM_sys_activ_variables { |
---|
[623] | 2076 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 2077 | if ( $DEBUG_sys ) ; then |
---|
| 2078 | echo "IGCM_sys_activ_variables" |
---|
| 2079 | fi |
---|
[622] | 2080 | |
---|
[811] | 2081 | # -------------------------------------------------------------------- |
---|
| 2082 | #D- MPI specifications |
---|
| 2083 | # -------------------------------------------------------------------- |
---|
| 2084 | |
---|
| 2085 | # -------------------------------------------------------------------- |
---|
| 2086 | #D- Other specifications |
---|
| 2087 | # -------------------------------------------------------------------- |
---|
| 2088 | |
---|
[623] | 2089 | ulimit -s unlimited |
---|
[622] | 2090 | |
---|
[623] | 2091 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[622] | 2092 | } |
---|
| 2093 | |
---|
| 2094 | ############################################################ |
---|
| 2095 | # Desactivate Running Environnment Variables |
---|
| 2096 | |
---|
[811] | 2097 | #D-#================================================== |
---|
| 2098 | #D-function IGCM_sys_desactiv_variables |
---|
| 2099 | #D-* Purpose: unset environement variables after execution |
---|
| 2100 | #D-* Examples: |
---|
| 2101 | #D- |
---|
[622] | 2102 | function IGCM_sys_desactiv_variables { |
---|
[623] | 2103 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 2104 | if ( $DEBUG_sys ) ; then |
---|
| 2105 | echo "IGCM_sys_desactiv_variables" |
---|
| 2106 | fi |
---|
[811] | 2107 | # -------------------------------------------------------------------- |
---|
| 2108 | #D- MPI specifications |
---|
| 2109 | # -------------------------------------------------------------------- |
---|
| 2110 | |
---|
| 2111 | # -------------------------------------------------------------------- |
---|
| 2112 | #D- Other specifications |
---|
| 2113 | # -------------------------------------------------------------------- |
---|
| 2114 | |
---|
[623] | 2115 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[622] | 2116 | } |
---|
| 2117 | |
---|
[623] | 2118 | ############################################################ |
---|
| 2119 | # Build MPI/OMP scripts run file (dummy function) |
---|
[622] | 2120 | |
---|
[811] | 2121 | #D-#================================================== |
---|
| 2122 | #D-function IGCM_sys_build_run_file |
---|
| 2123 | #D-* Purpose: build run file (deprecated) |
---|
| 2124 | #D-* Examples: |
---|
| 2125 | #D- |
---|
[622] | 2126 | function IGCM_sys_build_run_file { |
---|
| 2127 | |
---|
[811] | 2128 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[622] | 2129 | |
---|
| 2130 | } |
---|
| 2131 | |
---|
| 2132 | ############################################################ |
---|
| 2133 | # Build MPI/OMP scripts |
---|
[811] | 2134 | |
---|
| 2135 | #D-#================================================== |
---|
| 2136 | #D-function IGCM_sys_build_execution_scripts |
---|
| 2137 | #D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND} |
---|
| 2138 | #D-* Examples: |
---|
| 2139 | #D- |
---|
[623] | 2140 | function IGCM_sys_build_execution_scripts |
---|
[622] | 2141 | { |
---|
[623] | 2142 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 2143 | if ( $DEBUG_sys ) ; then |
---|
| 2144 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 2145 | fi |
---|
[622] | 2146 | |
---|
[623] | 2147 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
[622] | 2148 | |
---|
[1078] | 2149 | # MPMD mode |
---|
[623] | 2150 | if ( ${OK_PARA_MPMD} ) ; then |
---|
[622] | 2151 | |
---|
[1078] | 2152 | # Only MPI (MPMD) |
---|
| 2153 | if ( ! ${OK_PARA_OMP} ) ; then |
---|
[622] | 2154 | |
---|
[1078] | 2155 | if [ -f run_file ] ; then |
---|
| 2156 | IGCM_sys_Rm -f run_file |
---|
| 2157 | fi |
---|
| 2158 | touch run_file |
---|
[622] | 2159 | |
---|
[1078] | 2160 | # Build run_file |
---|
[622] | 2161 | |
---|
[1078] | 2162 | # First loop on the components for the coupler ie oasis (only if oasis3) |
---|
| 2163 | # the coupler ie oasis3 must be the first one |
---|
| 2164 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[622] | 2165 | |
---|
[1078] | 2166 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2167 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 2168 | |
---|
[1078] | 2169 | # for CPL component only |
---|
| 2170 | if [ "X${comp}" = "XCPL" ] && [ "X${ExeNameOut}" != X\"\" ] ; then |
---|
[1000] | 2171 | |
---|
[1078] | 2172 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2173 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2174 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 2175 | fi |
---|
| 2176 | done |
---|
[622] | 2177 | |
---|
[1078] | 2178 | # Then second loop on the components |
---|
| 2179 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[622] | 2180 | |
---|
[1078] | 2181 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2182 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[622] | 2183 | |
---|
[1078] | 2184 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 2185 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
[622] | 2186 | |
---|
[1078] | 2187 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2188 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2189 | echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 2190 | fi |
---|
| 2191 | done |
---|
[622] | 2192 | |
---|
[1078] | 2193 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
[622] | 2194 | |
---|
[1078] | 2195 | IGCM_sys_Chmod u+x run_file |
---|
| 2196 | if ( $DEBUG_sys ) ; then |
---|
| 2197 | echo "run_file contains : " |
---|
| 2198 | cat run_file |
---|
| 2199 | fi |
---|
[622] | 2200 | |
---|
[1078] | 2201 | # MPI-OpenMP (MPMD) |
---|
| 2202 | else |
---|
[622] | 2203 | |
---|
[1078] | 2204 | # Use of mpirun instead of ccc_mprun |
---|
| 2205 | EXECUTION="time mpirun" |
---|
[622] | 2206 | |
---|
[1078] | 2207 | # Hosts treatment |
---|
| 2208 | ${EXECUTION} hostname | sort | uniq > hosts.tmp |
---|
[622] | 2209 | |
---|
[1078] | 2210 | i=0 |
---|
| 2211 | rm -f hosts rankfile |
---|
| 2212 | IGCM_debug_Print 1 "sys Curie, Hosts available :" |
---|
| 2213 | for nodes in `cat hosts.tmp` |
---|
| 2214 | do |
---|
| 2215 | host[$i]=$nodes |
---|
| 2216 | echo "${host[$i]}" >> hosts |
---|
| 2217 | IGCM_debug_Print 1 ${host[$i]} |
---|
| 2218 | i=$((i+1)) |
---|
| 2219 | done |
---|
| 2220 | rm -f hosts.tmp |
---|
[1000] | 2221 | |
---|
[1078] | 2222 | listnodes=${host[*]} |
---|
[1000] | 2223 | |
---|
[1078] | 2224 | EXECUTION="${EXECUTION} -hostfile hosts -rankfile rankfile" |
---|
[1000] | 2225 | |
---|
[1078] | 2226 | # Initialisation |
---|
| 2227 | rank=0 |
---|
| 2228 | current_core=0 |
---|
| 2229 | core_per_node=16 |
---|
| 2230 | init_exec=n |
---|
[1000] | 2231 | |
---|
[1078] | 2232 | # Loop on the components |
---|
| 2233 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[1000] | 2234 | |
---|
[1078] | 2235 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2236 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[1000] | 2237 | |
---|
[1078] | 2238 | # Not possible if oasis has an executable (i.e old version of oasis3) |
---|
| 2239 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" = "XCPL" ] ) ; then |
---|
| 2240 | IGCM_debug_Exit "ERROR MPMD with hybrid MPI-OpenMP is not available with oasis3 version" |
---|
| 2241 | IGCM_debug_Print 2 "Only available with oasis3-MCT version coupler" |
---|
| 2242 | IGCM_debug_Verif_Exit |
---|
| 2243 | fi |
---|
[1000] | 2244 | |
---|
[1078] | 2245 | # Only if we really have an executable for the component : |
---|
| 2246 | if [ "X${ExeNameOut}" != X\"\" ] ; then |
---|
[1000] | 2247 | |
---|
[1078] | 2248 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2249 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[1000] | 2250 | |
---|
[1078] | 2251 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 2252 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2253 | if [ ${comp_proc_omp_loc} -gt 1 ] ; then |
---|
| 2254 | |
---|
| 2255 | # Check if the number of threads is correct |
---|
| 2256 | case ${comp_proc_omp_loc} in |
---|
| 2257 | 2|4|8|16) |
---|
| 2258 | IGCM_debug_Print 1 "You run ${ExeNameOut} on ${comp_proc_omp_loc} OMP threads" |
---|
| 2259 | ;; |
---|
| 2260 | *) |
---|
| 2261 | IGCM_debug_Exit "ERROR with OMP parameters !" |
---|
| 2262 | IGCM_debug_Print 2 "${comp_proc_omp_loc} is not possible as number of OMP threads" |
---|
| 2263 | IGCM_debug_Print 2 "Only 2,4,8,16 as number of OMP threads are possible " |
---|
| 2264 | IGCM_debug_Verif_Exit |
---|
| 2265 | ;; |
---|
| 2266 | esac |
---|
| 2267 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 2268 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 2269 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 2270 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 2271 | fi |
---|
| 2272 | #echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh |
---|
| 2273 | #echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh |
---|
| 2274 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2275 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 2276 | |
---|
| 2277 | if [ ${init_exec} = y ] ; then |
---|
| 2278 | EXECUTION="${EXECUTION} : -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
| 2279 | else |
---|
| 2280 | EXECUTION="${EXECUTION} -np ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
| 2281 | init_exec=y |
---|
| 2282 | fi |
---|
| 2283 | |
---|
[1000] | 2284 | # Build rankfile : method used to assign cores and nodes for the MPI process |
---|
[1078] | 2285 | # Ex : |
---|
| 2286 | #rank 0=curie5296 slot=0,1,2,3 |
---|
[1000] | 2287 | #rank 1=curie5296 slot=4,5,6,7 |
---|
| 2288 | # Example of final command : |
---|
| 2289 | # mpirun -hostfile hosts -rankfile rankfile -np 27 ./script_lmdz.x.ksh : -np 5 ./script_opa.xx.ksh |
---|
| 2290 | # with script_lmdz.x.ksh : |
---|
| 2291 | # #!/bin/ksh |
---|
| 2292 | #export KMP_STACKSIZE=3g |
---|
| 2293 | #export KMP_LIBRARY=turnaround |
---|
| 2294 | #export MKL_SERIAL=YES |
---|
| 2295 | #OMP_NUM_THREADS=4 |
---|
| 2296 | #./lmdz.x |
---|
| 2297 | # |
---|
| 2298 | |
---|
[1078] | 2299 | for nb_proc_mpi in `seq 0 $(($comp_proc_mpi_loc-1))`; do |
---|
| 2300 | (( index_host = current_core / core_per_node )) |
---|
| 2301 | host_value=${host[${index_host}]} |
---|
| 2302 | (( slot = current_core % core_per_node )) |
---|
| 2303 | virg="," |
---|
| 2304 | string_final="" |
---|
| 2305 | for index in `seq $slot $(($slot+$comp_proc_omp_loc-1))`; do |
---|
| 2306 | string=$index$virg |
---|
| 2307 | string_final=$string_final$string |
---|
| 2308 | done |
---|
| 2309 | string_final=$( echo $string_final | sed "s/.$//" ) |
---|
| 2310 | echo "rank $rank=$host_value slot=$string_final" >> rankfile |
---|
| 2311 | (( rank = rank + 1 )) |
---|
| 2312 | (( current_core = current_core + comp_proc_omp_loc )) |
---|
| 2313 | done |
---|
| 2314 | fi |
---|
[1000] | 2315 | |
---|
[1078] | 2316 | done |
---|
| 2317 | fi |
---|
[1000] | 2318 | |
---|
[1078] | 2319 | # Only one executable (SPMD mode). |
---|
| 2320 | else |
---|
[1000] | 2321 | |
---|
[622] | 2322 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2323 | |
---|
[685] | 2324 | # Only if we really have an executable for the component : |
---|
[623] | 2325 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[685] | 2326 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[622] | 2327 | |
---|
[685] | 2328 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 2329 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2330 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 2331 | |
---|
| 2332 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 2333 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2334 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2335 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 2336 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 2337 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 2338 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 2339 | fi |
---|
| 2340 | |
---|
| 2341 | if ( ${OK_PARA_MPI} ) ; then |
---|
[623] | 2342 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
[685] | 2343 | # Default : ccc_mprun used if nb_proc gt 1 |
---|
| 2344 | # to have out/err per process on different files |
---|
| 2345 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}" >> script_${ExeNameOut}.ksh |
---|
| 2346 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2347 | EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh" |
---|
[623] | 2348 | else |
---|
[685] | 2349 | # Default : ccc_mprun is NOT used if nb_proc eq 1 |
---|
| 2350 | # to have out/err per process on different files |
---|
| 2351 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 2352 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 2353 | EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh" |
---|
[622] | 2354 | fi |
---|
[685] | 2355 | |
---|
| 2356 | IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains" |
---|
| 2357 | cat script_${ExeNameOut}.ksh |
---|
| 2358 | |
---|
[623] | 2359 | fi |
---|
[622] | 2360 | |
---|
| 2361 | done |
---|
| 2362 | |
---|
[623] | 2363 | fi |
---|
[622] | 2364 | |
---|
[623] | 2365 | IGCM_debug_Print 1 "sys Curie : execution command is " |
---|
| 2366 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[622] | 2367 | |
---|
[623] | 2368 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[622] | 2369 | } |
---|
| 2370 | |
---|
[933] | 2371 | #D-#================================================== |
---|
| 2372 | #D-function IGCM_sys_check_path |
---|
| 2373 | #D-* Purpose: check that RUN_DIR_PATH that will be removed on some machine |
---|
| 2374 | #D-* do not point to an important use directory. Stop immediately in that case. |
---|
| 2375 | #D-* Examples: |
---|
| 2376 | #D- |
---|
| 2377 | function IGCM_sys_check_path { |
---|
| 2378 | IGCM_debug_PushStack "IGCM_sys_check_path" |
---|
| 2379 | if ( $DEBUG_sys ) ; then |
---|
| 2380 | echo "IGCM_sys_check_path" |
---|
| 2381 | fi |
---|
[811] | 2382 | |
---|
[933] | 2383 | if ( [ X${RUN_DIR_PATH} = X${HOME} ] || [ X${RUN_DIR_PATH} = X${WORKDIR} ] || [ X${RUN_DIR_PATH} = X${SCRATCHDIR} ] || [ X${RUN_DIR_PATH} = X${CCCWORKDIR} ] || [ X${RUN_DIR_PATH} = X${CCCSTOREDIR} ] ) ; then |
---|
| 2384 | IGCM_debug_Print 1 "Variable RUN_DIR_PATH is pointing to an important directory : ${RUN_DIR_PATH}" |
---|
| 2385 | IGCM_debug_Print 1 "Please check the RUN_DIR_PATH definition in your Job : Job_${config_UserChoices_JobName}" |
---|
[936] | 2386 | IGCM_debug_Exit "This will stop the job" |
---|
[933] | 2387 | fi |
---|
| 2388 | IGCM_debug_PopStack "IGCM_sys_check_path" |
---|
| 2389 | } |
---|
| 2390 | |
---|
[811] | 2391 | #D-#================================================== |
---|
| 2392 | #D-function IGCM_sys_check_quota |
---|
| 2393 | #D-* Purpose: check user quota. Stop the simulation if quota above 90% |
---|
| 2394 | #D-* Examples: |
---|
| 2395 | #D- |
---|
[714] | 2396 | function IGCM_sys_check_quota { |
---|
[776] | 2397 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 2398 | if ( $DEBUG_sys ) ; then |
---|
| 2399 | echo "IGCM_sys_check_quota" |
---|
| 2400 | fi |
---|
| 2401 | # Limit of quota (in %) |
---|
| 2402 | limit_quota=90 |
---|
| 2403 | |
---|
| 2404 | # Check of the volume |
---|
[912] | 2405 | volume_quota=$(ccc_quota | grep ' scratch' | gawk '{print $2}') |
---|
| 2406 | volume_avail=$(ccc_quota | grep ' scratch' | gawk '{print $3}') |
---|
[776] | 2407 | |
---|
| 2408 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
| 2409 | |
---|
| 2410 | unit_avail=${volume_avail: -1} |
---|
| 2411 | unit_quota=${volume_quota: -1} |
---|
| 2412 | |
---|
| 2413 | if [ "${unit_quota}" = "*" ] ; then |
---|
[811] | 2414 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2415 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2416 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2417 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2418 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2419 | IGCM_debug_Verif_Exit |
---|
[714] | 2420 | fi |
---|
[776] | 2421 | |
---|
| 2422 | temp_avail=${volume_avail%%${volume_avail: -1}*} |
---|
| 2423 | temp_quota=${volume_quota%%${volume_quota: -1}*} |
---|
| 2424 | |
---|
| 2425 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2426 | |
---|
| 2427 | # Convertion |
---|
| 2428 | if [ ${volume_avail: -1} = "T" ] ; then |
---|
| 2429 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2430 | elif [ ${volume_avail: -1} = "G" ] ; then |
---|
| 2431 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2432 | elif [ ${volume_avail: -1} = "M" ] ; then |
---|
| 2433 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2434 | elif [ ${volume_avail: -1} = "k" ] ; then |
---|
| 2435 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2436 | else |
---|
| 2437 | (( temp_avail = volume_avail )) |
---|
| 2438 | fi |
---|
| 2439 | if [ ${volume_quota: -1} = "T" ] ; then |
---|
| 2440 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2441 | elif [ ${volume_quota: -1} = "G" ] ; then |
---|
| 2442 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2443 | elif [ ${volume_quota: -1} = "M" ] ; then |
---|
| 2444 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2445 | elif [ ${volume_quota: -1} = "k" ] ; then |
---|
| 2446 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2447 | else |
---|
| 2448 | (( temp_quota = volume_quota )) |
---|
| 2449 | fi |
---|
| 2450 | fi |
---|
| 2451 | |
---|
| 2452 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2453 | # echo "volume ratio is " $quota_volume |
---|
| 2454 | |
---|
| 2455 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
| 2456 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2457 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 2458 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2459 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2460 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2461 | IGCM_debug_Verif_Exit |
---|
| 2462 | fi |
---|
| 2463 | |
---|
| 2464 | fi |
---|
| 2465 | |
---|
| 2466 | # Check of the number of inodes |
---|
| 2467 | |
---|
[912] | 2468 | inode_quota=$(ccc_quota | grep ' scratch' | gawk '{print $6}') |
---|
| 2469 | inode_avail=$(ccc_quota | grep ' scratch' | gawk '{print $7}') |
---|
[776] | 2470 | |
---|
| 2471 | if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then |
---|
| 2472 | |
---|
| 2473 | unit_avail=${inode_avail: -1} |
---|
| 2474 | unit_quota=${inode_quota: -1} |
---|
| 2475 | |
---|
| 2476 | if [ "${unit_quota}" = "*" ] ; then |
---|
[811] | 2477 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2478 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2479 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2480 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2481 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2482 | IGCM_debug_Verif_Exit |
---|
[776] | 2483 | fi |
---|
| 2484 | |
---|
| 2485 | temp_avail=${inode_avail%%${inode_avail: -1}*} |
---|
| 2486 | temp_quota=${inode_quota%%${inode_quota: -1}*} |
---|
| 2487 | |
---|
| 2488 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2489 | |
---|
| 2490 | # Convertion |
---|
| 2491 | if [ ${inode_avail: -1} = "T" ] ; then |
---|
| 2492 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2493 | elif [ ${inode_avail: -1} = "G" ] ; then |
---|
| 2494 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2495 | elif [ ${inode_avail: -1} = "M" ] ; then |
---|
| 2496 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2497 | elif [ ${inode_avail: -1} = "k" ] ; then |
---|
| 2498 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2499 | else |
---|
| 2500 | (( temp_avail = inode_avail )) |
---|
| 2501 | fi |
---|
| 2502 | |
---|
| 2503 | if [ ${inode_quota: -1} = "T" ] ; then |
---|
| 2504 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2505 | elif [ ${inode_quota: -1} = "G" ] ; then |
---|
| 2506 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2507 | elif [ ${inode_quota: -1} = "M" ] ; then |
---|
| 2508 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2509 | elif [ ${inode_quota: -1} = "k" ] ; then |
---|
| 2510 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2511 | else |
---|
| 2512 | (( temp_quota = inode_quota )) |
---|
| 2513 | fi |
---|
| 2514 | fi |
---|
| 2515 | quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2516 | # echo "inode ratio is " $quota_inode |
---|
| 2517 | |
---|
| 2518 | if [ ${quota_inode} -ge ${limit_quota} ] ; then |
---|
| 2519 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2520 | IGCM_debug_Print 1 "${quota_inode}% of your quota is used" |
---|
| 2521 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2522 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2523 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2524 | IGCM_debug_Verif_Exit |
---|
| 2525 | fi |
---|
| 2526 | fi |
---|
| 2527 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
[714] | 2528 | } |
---|
| 2529 | |
---|
[773] | 2530 | #D-#================================================== |
---|
[958] | 2531 | #D-function IGCM_sys_GetJobID |
---|
| 2532 | #D-* Purpose: Check if job_name is currently |
---|
| 2533 | #D- running or in queue |
---|
| 2534 | #D-* Examples: IGCM_sys_GetJobID ${JobName} ${TargetUsr} JobID |
---|
| 2535 | #D- |
---|
| 2536 | function IGCM_sys_GetJobID { |
---|
| 2537 | IGCM_debug_PushStack "IGCM_sys_GetJobID" |
---|
| 2538 | if ( $DEBUG_sys ) ; then |
---|
| 2539 | echo "IGCM_sys_GetJobID" |
---|
| 2540 | fi |
---|
| 2541 | |
---|
| 2542 | # With -f option, the full job name is given in the last column |
---|
| 2543 | ID=$( ccc_mstat -f -u $2 | \ |
---|
| 2544 | gawk -v JobName=$1 '( $NF ~ JobName ) { print $1 }' ) |
---|
| 2545 | |
---|
| 2546 | eval ${3}=${ID} |
---|
| 2547 | |
---|
| 2548 | IGCM_debug_PopStack "IGCM_sys_GetJobID" |
---|
| 2549 | } |
---|
| 2550 | |
---|
| 2551 | #D-#================================================== |
---|
[773] | 2552 | #D-function IGCM_sys_CountJobInQueue |
---|
| 2553 | #D-* Purpose: Check if job_name is currently |
---|
| 2554 | #D- running or in queue |
---|
| 2555 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 2556 | #D- |
---|
| 2557 | function IGCM_sys_CountJobInQueue { |
---|
| 2558 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 2559 | if ( $DEBUG_sys ) ; then |
---|
| 2560 | echo "IGCM_sys_CountJobInQueue" |
---|
| 2561 | fi |
---|
| 2562 | |
---|
| 2563 | #NbRun=$( ccc_mstat -f | grep -c ${JobName} ) |
---|
| 2564 | |
---|
| 2565 | # With -f option, the full job name is given in the last column |
---|
[834] | 2566 | NbRun=$( ccc_mstat -f | gawk -v JobName=$1 'BEGIN { x=0 } ( $NF ~ JobName ) { x=x+1 } END { print x }' ) |
---|
[773] | 2567 | |
---|
| 2568 | eval ${2}=${NbRun} |
---|
| 2569 | |
---|
| 2570 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 2571 | } |
---|
| 2572 | |
---|
[955] | 2573 | #D-#================================================== |
---|
| 2574 | #D-function IGCM_sys_ListJobInQueue |
---|
| 2575 | #D-* Purpose: Check if job_name is currently |
---|
| 2576 | #D- running or in queue |
---|
| 2577 | #D-* Examples: IGCM_sys_ListJobInQueue ${User} JobNameList |
---|
| 2578 | #D- |
---|
| 2579 | function IGCM_sys_ListJobInQueue { |
---|
| 2580 | IGCM_debug_PushStack "IGCM_sys_ListJobInQueue" |
---|
| 2581 | if ( $DEBUG_sys ) ; then |
---|
| 2582 | echo "IGCM_sys_ListJobInQueue" |
---|
| 2583 | fi |
---|
| 2584 | |
---|
| 2585 | # With -f option, the full job name is given in the last column |
---|
| 2586 | set -A JobList $( ccc_mstat -f | gawk -v User=$1 \ |
---|
| 2587 | '( $2 == User && \ |
---|
| 2588 | $NF != /TS/ && \ |
---|
| 2589 | $NF !~ /PACK/ && \ |
---|
| 2590 | $NF !~ /REBUILD/ && \ |
---|
| 2591 | $NF !~ /pack/ ) \ |
---|
| 2592 | { print $NF }' | sed -e "s/\(.*\)\.[0-9]*/\1/" ) |
---|
| 2593 | |
---|
| 2594 | eval set -A ${2} ${JobList[*]} |
---|
| 2595 | |
---|
| 2596 | IGCM_debug_PopStack "IGCM_sys_ListJobInQueue" |
---|
| 2597 | } |
---|
| 2598 | |
---|
[622] | 2599 | ############################################################## |
---|
| 2600 | # NCO OPERATOR |
---|
| 2601 | |
---|
[811] | 2602 | #D-#================================================== |
---|
| 2603 | #D-function IGCM_sys_ncap2 |
---|
| 2604 | #D-* Purpose: encapsulate ncap2 call so as to manage error code and retry |
---|
| 2605 | #D-* Examples: |
---|
| 2606 | #D- |
---|
[623] | 2607 | function IGCM_sys_ncap2 { |
---|
[1057] | 2608 | IGCM_debug_PushStack "IGCM_sys_ncap2" $@ |
---|
[623] | 2609 | if ( $DEBUG_sys ) ; then |
---|
| 2610 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 2611 | fi |
---|
[713] | 2612 | |
---|
| 2613 | typeset NB_ESSAI DELAI status i |
---|
| 2614 | # number of tentative |
---|
| 2615 | NB_ESSAI=3 |
---|
| 2616 | # time delay between tentative |
---|
| 2617 | DELAI=2 |
---|
| 2618 | |
---|
| 2619 | i=0 |
---|
| 2620 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2621 | ncap2 -C "$@" > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2622 | status=$? |
---|
| 2623 | if [ ${status} -gt 0 ] ; then |
---|
| 2624 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
[938] | 2625 | cat /tmp/out_command.$$ |
---|
| 2626 | \rm /tmp/out_command.$$ |
---|
[713] | 2627 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2628 | sleep $DELAI |
---|
[713] | 2629 | else |
---|
[938] | 2630 | \rm /tmp/out_command.$$ |
---|
[713] | 2631 | break |
---|
| 2632 | fi |
---|
| 2633 | (( i = i + 1 )) |
---|
| 2634 | done |
---|
| 2635 | |
---|
| 2636 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2637 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 2638 | IGCM_debug_Exit "ncap2" |
---|
[623] | 2639 | fi |
---|
| 2640 | |
---|
| 2641 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 2642 | } |
---|
| 2643 | |
---|
[811] | 2644 | #D-#================================================== |
---|
| 2645 | #D-function IGCM_sys_ncatted |
---|
| 2646 | #D-* Purpose: encapsulate ncatted call so as to manage error code and retry |
---|
| 2647 | #D-* Examples: |
---|
| 2648 | #D- |
---|
[622] | 2649 | function IGCM_sys_ncatted { |
---|
[1057] | 2650 | IGCM_debug_PushStack "IGCM_sys_ncatted" $@ |
---|
[623] | 2651 | if ( $DEBUG_sys ) ; then |
---|
| 2652 | echo "IGCM_sys_ncatted :" $@ |
---|
| 2653 | fi |
---|
[713] | 2654 | |
---|
| 2655 | typeset NB_ESSAI DELAI status i |
---|
| 2656 | # number of tentative |
---|
| 2657 | NB_ESSAI=3 |
---|
| 2658 | # time delay between tentative |
---|
| 2659 | DELAI=2 |
---|
| 2660 | |
---|
| 2661 | i=0 |
---|
| 2662 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 2663 | ncatted "$@" > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2664 | status=$? |
---|
| 2665 | if [ ${status} -gt 0 ] ; then |
---|
| 2666 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
[938] | 2667 | cat /tmp/out_command.$$ |
---|
| 2668 | \rm /tmp/out_command.$$ |
---|
[713] | 2669 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2670 | sleep $DELAI |
---|
[713] | 2671 | else |
---|
[938] | 2672 | \rm /tmp/out_command.$$ |
---|
[713] | 2673 | break |
---|
| 2674 | fi |
---|
| 2675 | (( i = i + 1 )) |
---|
| 2676 | done |
---|
| 2677 | |
---|
| 2678 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2679 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 2680 | IGCM_debug_Exit "ncatted" |
---|
[623] | 2681 | fi |
---|
[622] | 2682 | |
---|
[623] | 2683 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[622] | 2684 | } |
---|
| 2685 | |
---|
[811] | 2686 | #D-#================================================== |
---|
| 2687 | #D-function IGCM_sys_ncbo |
---|
| 2688 | #D-* Purpose: encapsulate ncbo call so as to manage error code and retry |
---|
| 2689 | #D-* Examples: |
---|
| 2690 | #D- |
---|
[622] | 2691 | function IGCM_sys_ncbo { |
---|
[1057] | 2692 | IGCM_debug_PushStack "IGCM_sys_ncbo" $@ |
---|
[623] | 2693 | if ( $DEBUG_sys ) ; then |
---|
| 2694 | echo "IGCM_sys_ncbo :" $@ |
---|
| 2695 | fi |
---|
[713] | 2696 | |
---|
| 2697 | typeset NB_ESSAI DELAI status i |
---|
| 2698 | # number of tentative |
---|
| 2699 | NB_ESSAI=3 |
---|
| 2700 | # time delay between tentative |
---|
| 2701 | DELAI=2 |
---|
| 2702 | |
---|
| 2703 | i=0 |
---|
| 2704 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2705 | ncbo -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2706 | status=$? |
---|
| 2707 | if [ ${status} -gt 0 ] ; then |
---|
| 2708 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
[938] | 2709 | cat /tmp/out_command.$$ |
---|
| 2710 | \rm /tmp/out_command.$$ |
---|
[713] | 2711 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2712 | sleep $DELAI |
---|
[713] | 2713 | else |
---|
[938] | 2714 | \rm /tmp/out_command.$$ |
---|
[713] | 2715 | break |
---|
| 2716 | fi |
---|
| 2717 | (( i = i + 1 )) |
---|
| 2718 | done |
---|
| 2719 | |
---|
| 2720 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2721 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 2722 | IGCM_debug_Exit "ncbo" |
---|
[623] | 2723 | fi |
---|
[622] | 2724 | |
---|
[623] | 2725 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[622] | 2726 | } |
---|
| 2727 | |
---|
[811] | 2728 | #D-#================================================== |
---|
| 2729 | #D-function IGCM_sys_ncdif |
---|
| 2730 | #D-* Purpose: encapsulate ncdiff call so as to manage error code and retry |
---|
| 2731 | #D-* Examples: |
---|
| 2732 | #D- |
---|
[622] | 2733 | function IGCM_sys_ncdiff { |
---|
[1057] | 2734 | IGCM_debug_PushStack "IGCM_sys_ncdiff" $@ |
---|
[623] | 2735 | if ( $DEBUG_sys ) ; then |
---|
| 2736 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 2737 | fi |
---|
[713] | 2738 | |
---|
| 2739 | typeset NB_ESSAI DELAI status i |
---|
| 2740 | # number of tentative |
---|
| 2741 | NB_ESSAI=3 |
---|
| 2742 | # time delay between tentative |
---|
| 2743 | DELAI=2 |
---|
| 2744 | |
---|
| 2745 | i=0 |
---|
| 2746 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2747 | ncdiff -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2748 | status=$? |
---|
| 2749 | if [ ${status} -gt 0 ] ; then |
---|
| 2750 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
[938] | 2751 | cat /tmp/out_command.$$ |
---|
| 2752 | \rm /tmp/out_command.$$ |
---|
[713] | 2753 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2754 | sleep $DELAI |
---|
[713] | 2755 | else |
---|
[938] | 2756 | \rm /tmp/out_command.$$ |
---|
[713] | 2757 | break |
---|
| 2758 | fi |
---|
| 2759 | (( i = i + 1 )) |
---|
| 2760 | done |
---|
| 2761 | |
---|
| 2762 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2763 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 2764 | IGCM_debug_Exit "ncdiff" |
---|
[623] | 2765 | fi |
---|
[622] | 2766 | |
---|
[623] | 2767 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[622] | 2768 | } |
---|
| 2769 | |
---|
[811] | 2770 | #D-#================================================== |
---|
| 2771 | #D-function IGCM_sys_ncea |
---|
| 2772 | #D-* Purpose: encapsulate ncea call so as to manage error code and retry |
---|
| 2773 | #D-* Examples: |
---|
| 2774 | #D- |
---|
[622] | 2775 | function IGCM_sys_ncea { |
---|
[1057] | 2776 | IGCM_debug_PushStack "IGCM_sys_ncea" $@ |
---|
[623] | 2777 | if ( $DEBUG_sys ) ; then |
---|
| 2778 | echo "IGCM_sys_ncea :" $@ |
---|
| 2779 | fi |
---|
[713] | 2780 | |
---|
| 2781 | typeset NB_ESSAI DELAI status i |
---|
| 2782 | # number of tentative |
---|
| 2783 | NB_ESSAI=3 |
---|
| 2784 | # time delay between tentative |
---|
| 2785 | DELAI=2 |
---|
| 2786 | |
---|
| 2787 | i=0 |
---|
| 2788 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2789 | ncea -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2790 | status=$? |
---|
| 2791 | if [ ${status} -gt 0 ] ; then |
---|
| 2792 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
[938] | 2793 | cat /tmp/out_command.$$ |
---|
| 2794 | \rm /tmp/out_command.$$ |
---|
[713] | 2795 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2796 | sleep $DELAI |
---|
[713] | 2797 | else |
---|
[938] | 2798 | \rm /tmp/out_command.$$ |
---|
[713] | 2799 | break |
---|
| 2800 | fi |
---|
| 2801 | (( i = i + 1 )) |
---|
| 2802 | done |
---|
| 2803 | |
---|
| 2804 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2805 | echo "IGCM_sys_ncea : ncea error" |
---|
| 2806 | IGCM_debug_Exit "ncea" |
---|
[623] | 2807 | fi |
---|
[622] | 2808 | |
---|
[623] | 2809 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[622] | 2810 | } |
---|
| 2811 | |
---|
[811] | 2812 | #D-#================================================== |
---|
| 2813 | #D-function IGCM_sys_ncecat |
---|
| 2814 | #D-* Purpose: encapsulate ncecat call so as to manage error code and retry |
---|
| 2815 | #D-* Examples: |
---|
| 2816 | #D- |
---|
[622] | 2817 | function IGCM_sys_ncecat { |
---|
[1057] | 2818 | IGCM_debug_PushStack "IGCM_sys_ncecat" $@ |
---|
[623] | 2819 | if ( $DEBUG_sys ) ; then |
---|
| 2820 | echo "IGCM_sys_ncecat :" $@ |
---|
| 2821 | fi |
---|
[713] | 2822 | |
---|
| 2823 | typeset NB_ESSAI DELAI status i |
---|
| 2824 | # number of tentative |
---|
| 2825 | NB_ESSAI=3 |
---|
| 2826 | # time delay between tentative |
---|
| 2827 | DELAI=2 |
---|
| 2828 | |
---|
| 2829 | i=0 |
---|
| 2830 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2831 | ncecat -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2832 | status=$? |
---|
| 2833 | if [ ${status} -gt 0 ] ; then |
---|
| 2834 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
[938] | 2835 | cat /tmp/out_command.$$ |
---|
| 2836 | \rm /tmp/out_command.$$ |
---|
[713] | 2837 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2838 | sleep $DELAI |
---|
[713] | 2839 | else |
---|
[938] | 2840 | \rm /tmp/out_command.$$ |
---|
[713] | 2841 | break |
---|
| 2842 | fi |
---|
| 2843 | (( i = i + 1 )) |
---|
| 2844 | done |
---|
| 2845 | |
---|
| 2846 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2847 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 2848 | IGCM_debug_Exit "ncecat" |
---|
[623] | 2849 | fi |
---|
[622] | 2850 | |
---|
[623] | 2851 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[622] | 2852 | } |
---|
| 2853 | |
---|
[811] | 2854 | #D-#================================================== |
---|
| 2855 | #D-function IGCM_sys_ncflint |
---|
| 2856 | #D-* Purpose: encapsulate ncflint call so as to manage error code and retry |
---|
| 2857 | #D-* Examples: |
---|
| 2858 | #D- |
---|
[622] | 2859 | function IGCM_sys_ncflint { |
---|
[1057] | 2860 | IGCM_debug_PushStack "IGCM_sys_ncflint" $@ |
---|
[623] | 2861 | if ( $DEBUG_sys ) ; then |
---|
| 2862 | echo "IGCM_sys_ncflint :" $@ |
---|
| 2863 | fi |
---|
[713] | 2864 | |
---|
| 2865 | typeset NB_ESSAI DELAI status i |
---|
| 2866 | # number of tentative |
---|
| 2867 | NB_ESSAI=3 |
---|
| 2868 | # time delay between tentative |
---|
| 2869 | DELAI=2 |
---|
| 2870 | |
---|
| 2871 | i=0 |
---|
| 2872 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2873 | ncflint -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2874 | status=$? |
---|
| 2875 | if [ ${status} -gt 0 ] ; then |
---|
| 2876 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
[938] | 2877 | cat /tmp/out_command.$$ |
---|
| 2878 | \rm /tmp/out_command.$$ |
---|
[713] | 2879 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2880 | sleep $DELAI |
---|
[713] | 2881 | else |
---|
[938] | 2882 | \rm /tmp/out_command.$$ |
---|
[713] | 2883 | break |
---|
| 2884 | fi |
---|
| 2885 | (( i = i + 1 )) |
---|
| 2886 | done |
---|
| 2887 | |
---|
| 2888 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2889 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2890 | IGCM_debug_Exit "ncflint" |
---|
[623] | 2891 | fi |
---|
[622] | 2892 | |
---|
[623] | 2893 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[622] | 2894 | } |
---|
| 2895 | |
---|
[811] | 2896 | #D-#================================================== |
---|
| 2897 | #D-function IGCM_sys_ncks |
---|
| 2898 | #D-* Purpose: encapsulate ncks call so as to manage error code and retry |
---|
| 2899 | #D-* Examples: |
---|
| 2900 | #D- |
---|
[622] | 2901 | function IGCM_sys_ncks { |
---|
[1057] | 2902 | IGCM_debug_PushStack "IGCM_sys_ncks" $@ |
---|
[623] | 2903 | if ( $DEBUG_sys ) ; then |
---|
| 2904 | echo "IGCM_sys_ncks :" $@ |
---|
| 2905 | fi |
---|
[713] | 2906 | |
---|
| 2907 | typeset NB_ESSAI DELAI status i |
---|
| 2908 | # number of tentative |
---|
| 2909 | NB_ESSAI=3 |
---|
| 2910 | # time delay between tentative |
---|
| 2911 | DELAI=2 |
---|
| 2912 | |
---|
| 2913 | i=0 |
---|
| 2914 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2915 | ncks -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2916 | status=$? |
---|
| 2917 | if [ ${status} -gt 0 ] ; then |
---|
| 2918 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
[938] | 2919 | cat /tmp/out_command.$$ |
---|
| 2920 | \rm /tmp/out_command.$$ |
---|
[713] | 2921 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2922 | sleep $DELAI |
---|
[713] | 2923 | else |
---|
[938] | 2924 | \rm /tmp/out_command.$$ |
---|
[713] | 2925 | break |
---|
| 2926 | fi |
---|
| 2927 | (( i = i + 1 )) |
---|
| 2928 | done |
---|
| 2929 | |
---|
| 2930 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2931 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2932 | IGCM_debug_Exit "ncks" |
---|
[623] | 2933 | fi |
---|
[622] | 2934 | |
---|
[623] | 2935 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[622] | 2936 | } |
---|
| 2937 | |
---|
[811] | 2938 | #D-#================================================== |
---|
| 2939 | #D-function IGCM_sys_ncpdq |
---|
| 2940 | #D-* Purpose: encapsulate ncpdq call so as to manage error code and retry |
---|
| 2941 | #D-* Examples: |
---|
| 2942 | #D- |
---|
[622] | 2943 | function IGCM_sys_ncpdq { |
---|
[1057] | 2944 | IGCM_debug_PushStack "IGCM_sys_ncpdq" $@ |
---|
[623] | 2945 | if ( $DEBUG_sys ) ; then |
---|
| 2946 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2947 | fi |
---|
[713] | 2948 | |
---|
| 2949 | typeset NB_ESSAI DELAI status i |
---|
| 2950 | # number of tentative |
---|
| 2951 | NB_ESSAI=3 |
---|
| 2952 | # time delay between tentative |
---|
| 2953 | DELAI=2 |
---|
| 2954 | |
---|
| 2955 | i=0 |
---|
| 2956 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2957 | ncpdq -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 2958 | status=$? |
---|
| 2959 | if [ ${status} -gt 0 ] ; then |
---|
| 2960 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
[938] | 2961 | cat /tmp/out_command.$$ |
---|
| 2962 | \rm /tmp/out_command.$$ |
---|
[713] | 2963 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2964 | sleep $DELAI |
---|
[713] | 2965 | else |
---|
[938] | 2966 | \rm /tmp/out_command.$$ |
---|
[713] | 2967 | break |
---|
| 2968 | fi |
---|
| 2969 | (( i = i + 1 )) |
---|
| 2970 | done |
---|
| 2971 | |
---|
| 2972 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 2973 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2974 | IGCM_debug_Exit "ncpdq" |
---|
[623] | 2975 | fi |
---|
[622] | 2976 | |
---|
[623] | 2977 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[622] | 2978 | } |
---|
| 2979 | |
---|
[811] | 2980 | #D-#================================================== |
---|
| 2981 | #D-function IGCM_sys_ncra |
---|
| 2982 | #D-* Purpose: encapsulate ncra call so as to manage error code and retry |
---|
| 2983 | #D-* Examples: |
---|
| 2984 | #D- |
---|
[622] | 2985 | function IGCM_sys_ncra { |
---|
[1057] | 2986 | IGCM_debug_PushStack "IGCM_sys_ncra" $@ |
---|
[623] | 2987 | if ( $DEBUG_sys ) ; then |
---|
| 2988 | echo "IGCM_sys_ncra :" $@ |
---|
| 2989 | fi |
---|
[713] | 2990 | |
---|
| 2991 | typeset NB_ESSAI DELAI status i |
---|
| 2992 | # number of tentative |
---|
| 2993 | NB_ESSAI=3 |
---|
| 2994 | # time delay between tentative |
---|
| 2995 | DELAI=2 |
---|
| 2996 | |
---|
| 2997 | i=0 |
---|
| 2998 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 2999 | ncra -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3000 | status=$? |
---|
| 3001 | if [ ${status} -gt 0 ] ; then |
---|
| 3002 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
[938] | 3003 | cat /tmp/out_command.$$ |
---|
| 3004 | \rm /tmp/out_command.$$ |
---|
[713] | 3005 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3006 | sleep $DELAI |
---|
[713] | 3007 | else |
---|
[938] | 3008 | \rm /tmp/out_command.$$ |
---|
[713] | 3009 | break |
---|
| 3010 | fi |
---|
| 3011 | (( i = i + 1 )) |
---|
| 3012 | done |
---|
| 3013 | |
---|
| 3014 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 3015 | echo "IGCM_sys_ncra : ncra error" |
---|
| 3016 | IGCM_debug_Exit "ncra" |
---|
[623] | 3017 | fi |
---|
[622] | 3018 | |
---|
[623] | 3019 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[622] | 3020 | } |
---|
| 3021 | |
---|
[811] | 3022 | #D-#================================================== |
---|
| 3023 | #D-function IGCM_sys_ncrcat |
---|
| 3024 | #D-* Purpose: encapsulate ncrcat call so as to manage error code and retry |
---|
| 3025 | #D-* Examples: |
---|
| 3026 | #D- |
---|
[622] | 3027 | function IGCM_sys_ncrcat { |
---|
[1057] | 3028 | IGCM_debug_PushStack "IGCM_sys_ncrcat" $@ |
---|
[623] | 3029 | if ( $DEBUG_sys ) ; then |
---|
| 3030 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 3031 | fi |
---|
[713] | 3032 | |
---|
[725] | 3033 | typeset NB_ESSAI DELAI status i lastArg |
---|
[713] | 3034 | # number of tentative |
---|
| 3035 | NB_ESSAI=3 |
---|
| 3036 | # time delay between tentative |
---|
| 3037 | DELAI=2 |
---|
| 3038 | |
---|
| 3039 | i=0 |
---|
| 3040 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 3041 | ncrcat -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3042 | status=$? |
---|
| 3043 | if [ ${status} -gt 0 ] ; then |
---|
| 3044 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
[938] | 3045 | cat /tmp/out_command.$$ |
---|
| 3046 | \rm /tmp/out_command.$$ |
---|
[713] | 3047 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3048 | sleep $DELAI |
---|
[938] | 3049 | elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" /tmp/out_command.$$ )" = "X" ] ; then |
---|
[721] | 3050 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity" |
---|
[938] | 3051 | cat /tmp/out_command.$$ |
---|
[725] | 3052 | # remove files having corrupted time axis |
---|
[734] | 3053 | eval lastArg=\${$#} |
---|
[725] | 3054 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}" |
---|
| 3055 | \rm ${lastArg} |
---|
[938] | 3056 | \rm /tmp/out_command.$$ |
---|
[721] | 3057 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3058 | sleep $DELAI |
---|
[713] | 3059 | else |
---|
[938] | 3060 | \rm /tmp/out_command.$$ |
---|
[713] | 3061 | break |
---|
| 3062 | fi |
---|
| 3063 | (( i = i + 1 )) |
---|
| 3064 | done |
---|
| 3065 | |
---|
| 3066 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 3067 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 3068 | #IGCM_debug_Exit "ncrcat" |
---|
[623] | 3069 | fi |
---|
[622] | 3070 | |
---|
[623] | 3071 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[622] | 3072 | } |
---|
| 3073 | |
---|
[811] | 3074 | #D-#================================================== |
---|
| 3075 | #D-function IGCM_sys_ncrename |
---|
| 3076 | #D-* Purpose: encapsulate ncrename call so as to manage error code and retry |
---|
| 3077 | #D-* Examples: |
---|
| 3078 | #D- |
---|
[622] | 3079 | function IGCM_sys_ncrename { |
---|
[1057] | 3080 | IGCM_debug_PushStack "IGCM_sys_ncrename" $@ |
---|
[623] | 3081 | if ( $DEBUG_sys ) ; then |
---|
| 3082 | echo "IGCM_sys_ncrename :" $@ |
---|
| 3083 | fi |
---|
[713] | 3084 | |
---|
| 3085 | typeset NB_ESSAI DELAI status i |
---|
| 3086 | # number of tentative |
---|
| 3087 | NB_ESSAI=3 |
---|
| 3088 | # time delay between tentative |
---|
| 3089 | DELAI=2 |
---|
| 3090 | |
---|
| 3091 | i=0 |
---|
| 3092 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[938] | 3093 | ncrename $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3094 | status=$? |
---|
| 3095 | if [ ${status} -gt 0 ] ; then |
---|
| 3096 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
[938] | 3097 | cat /tmp/out_command.$$ |
---|
| 3098 | \rm /tmp/out_command.$$ |
---|
[713] | 3099 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3100 | sleep $DELAI |
---|
[713] | 3101 | else |
---|
[938] | 3102 | \rm /tmp/out_command.$$ |
---|
[713] | 3103 | break |
---|
| 3104 | fi |
---|
| 3105 | (( i = i + 1 )) |
---|
| 3106 | done |
---|
| 3107 | |
---|
| 3108 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 3109 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 3110 | IGCM_debug_Exit "ncrename" |
---|
[623] | 3111 | fi |
---|
[622] | 3112 | |
---|
[623] | 3113 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[622] | 3114 | } |
---|
| 3115 | |
---|
[811] | 3116 | #D-#================================================== |
---|
| 3117 | #D-function IGCM_sys_ncwa |
---|
| 3118 | #D-* Purpose: encapsulate ncwa call so as to manage error code and retry |
---|
| 3119 | #D-* Examples: |
---|
| 3120 | #D- |
---|
[622] | 3121 | function IGCM_sys_ncwa { |
---|
[1057] | 3122 | IGCM_debug_PushStack "IGCM_sys_ncwa" $@ |
---|
[623] | 3123 | if ( $DEBUG_sys ) ; then |
---|
| 3124 | echo "IGCM_sys_ncwa :" $@ |
---|
| 3125 | fi |
---|
[713] | 3126 | |
---|
| 3127 | typeset NB_ESSAI DELAI status i |
---|
| 3128 | # number of tentative |
---|
| 3129 | NB_ESSAI=3 |
---|
| 3130 | # time delay between tentative |
---|
| 3131 | DELAI=2 |
---|
| 3132 | |
---|
| 3133 | i=0 |
---|
| 3134 | while [ $i -lt $NB_ESSAI ] ; do |
---|
[1091] | 3135 | ncwa -C $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3136 | status=$? |
---|
| 3137 | if [ ${status} -gt 0 ] ; then |
---|
| 3138 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
[938] | 3139 | cat /tmp/out_command.$$ |
---|
| 3140 | \rm /tmp/out_command.$$ |
---|
[713] | 3141 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 3142 | sleep $DELAI |
---|
[713] | 3143 | else |
---|
[938] | 3144 | \rm /tmp/out_command.$$ |
---|
[713] | 3145 | break |
---|
| 3146 | fi |
---|
| 3147 | (( i = i + 1 )) |
---|
| 3148 | done |
---|
| 3149 | |
---|
| 3150 | if [ ${status} -gt 0 ] ; then |
---|
[811] | 3151 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 3152 | IGCM_debug_Exit "ncwa" |
---|
[623] | 3153 | fi |
---|
[622] | 3154 | |
---|
[623] | 3155 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[622] | 3156 | } |
---|
[623] | 3157 | |
---|
| 3158 | ############################################################## |
---|
| 3159 | # CDO OPERATOR |
---|
| 3160 | |
---|
[811] | 3161 | #D-#================================================== |
---|
| 3162 | #D-function IGCM_sys_cdo |
---|
| 3163 | #D-* Purpose: encapsulate cdo call so as to manage error code and retry |
---|
| 3164 | #D-* Examples: |
---|
| 3165 | #D- |
---|
[623] | 3166 | function IGCM_sys_cdo { |
---|
[1057] | 3167 | IGCM_debug_PushStack "IGCM_sys_cdo" $@ |
---|
[623] | 3168 | if ( $DEBUG_sys ) ; then |
---|
| 3169 | echo "IGCM_sys_cdo :" $@ |
---|
| 3170 | fi |
---|
[713] | 3171 | |
---|
| 3172 | typeset status |
---|
| 3173 | |
---|
[938] | 3174 | \cdo $@ > /tmp/out_command.$$ 2>&1 |
---|
[713] | 3175 | status=$? |
---|
| 3176 | if [ ${status} -gt 0 ] ; then |
---|
| 3177 | echo "IGCM_sys_cdo : error code ${status}" |
---|
[938] | 3178 | cat /tmp/out_command.$$ |
---|
| 3179 | \rm /tmp/out_command.$$ |
---|
[623] | 3180 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 3181 | return 1 |
---|
| 3182 | else |
---|
| 3183 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 3184 | return 0 |
---|
| 3185 | fi |
---|
| 3186 | |
---|
| 3187 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 3188 | } |
---|