1 | #-Q- cesium #!/bin/ksh |
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2 | #-Q- cesium ###################### |
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3 | #-Q- cesium ## CESIUM CEA ## |
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4 | #-Q- cesium ###################### |
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5 | #-Q- cesium #MSUB -r TS # Nom du job |
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6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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9 | #-Q- cesium #MSUB -E "-j o" |
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10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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11 | #-Q- curie ###################### |
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12 | #-Q- curie ## CURIE TGCC/CEA ## |
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13 | #-Q- curie ###################### |
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14 | #-Q- curie #MSUB -r TS # Nom du job |
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15 | #-Q- curie #MSUB -eo |
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16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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18 | #-Q- curie #MSUB -E '--no-requeue' |
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19 | #-Q- curie #MSUB -q large |
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20 | #-Q- curie set +x |
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21 | #-Q- platine #!/usr/bin/ksh |
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22 | #-Q- platine ################### |
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23 | #-Q- platine ## PLATINE CEA ## |
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24 | #-Q- platine ################### |
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25 | #-Q- platine #BSUB -J TS # Nom du job |
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26 | #-Q- platine #BSUB -N # message a la fin du job |
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27 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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28 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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29 | #-Q- platine #BSUB -q post # Passage en queue post |
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30 | #-Q- platine #BSUB -L /bin/ksh |
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31 | #-Q- sx8brodie #!/bin/ksh |
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32 | #-Q- sx8brodie ####################### |
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33 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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34 | #-Q- sx8brodie ####################### |
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35 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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36 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
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37 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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38 | #-Q- sx8brodie # @ job_name = TS |
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39 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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40 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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41 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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42 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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43 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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44 | #-Q- sx8brodie # @ notification = error |
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45 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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46 | #-Q- sx8brodie # @ queue |
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47 | #-Q- aix6 #!/bin/ksh |
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48 | #-Q- aix6 ####################### |
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49 | #-Q- aix6 ## VARGAS IDRIS ## |
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50 | #-Q- aix6 ####################### |
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51 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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52 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
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53 | #-Q- aix6 # Nom du travail LoadLeveler |
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54 | #-Q- aix6 # @ job_name = TS |
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55 | #-Q- aix6 # Fichier de sortie standard du travail |
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56 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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57 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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58 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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59 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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60 | #-Q- aix6 # @ notification = error |
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61 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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62 | #-Q- aix6 # @ queue |
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63 | #-Q- ulam #!/bin/ksh |
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64 | #-Q- ulam ####################### |
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65 | #-Q- ulam ## ULAM IDRIS ## |
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66 | #-Q- ulam ####################### |
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67 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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68 | #-Q- ulam # @ wall_clock_limit = 20:00:00 |
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69 | #-Q- ulam # Nom du travail LoadLeveler |
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70 | #-Q- ulam # @ job_name = TS |
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71 | #-Q- ulam # Fichier de sortie standard du travail |
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72 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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73 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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74 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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75 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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76 | #-Q- ulam # @ notification = error |
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77 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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78 | #-Q- ulam # @ queue |
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79 | #-Q- sx8mercure #!/bin/ksh |
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80 | #-Q- sx8mercure ###################### |
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81 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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82 | #-Q- sx8mercure ###################### |
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83 | #-Q- sx8mercure #PBS -N TS # Nom du job |
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84 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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85 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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86 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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87 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
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88 | #-Q- sx8mercure #PBS -q scalaire |
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89 | #-Q- sx8mercure #PBS -r n |
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90 | #-Q- sx9mercure #!/bin/ksh |
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91 | #-Q- sx9mercure ###################### |
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92 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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93 | #-Q- sx9mercure ###################### |
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94 | #-Q- sx9mercure #PBS -N TS # Nom du job |
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95 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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96 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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97 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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98 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 2 heures |
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99 | #-Q- sx9mercure #PBS -q scalaire |
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100 | #-Q- sx9mercure #PBS -r n |
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101 | #-Q- titane #!/bin/ksh |
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102 | #-Q- titane ###################### |
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103 | #-Q- titane ## TITANE CEA ## |
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104 | #-Q- titane ###################### |
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105 | #-Q- titane #MSUB -r TS # Nom du job |
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106 | #-Q- titane #MSUB -eo |
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107 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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108 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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109 | #-Q- titane #MSUB -q mono |
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110 | #-Q- titane #MSUB -E '-rn' |
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111 | #-Q- lxiv8 ###################### |
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112 | #-Q- lxiv8 ## OBELIX LSCE ## |
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113 | #-Q- lxiv8 ###################### |
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114 | #-Q- lxiv8 #PBS -N TS |
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115 | #-Q- lxiv8 #PBS -m a |
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116 | #-Q- lxiv8 #PBS -j oe |
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117 | #-Q- lxiv8 #PBS -q medium |
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118 | #-Q- lxiv8 #PBS -o TS.$$ |
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119 | #-Q- lxiv8 #PBS -S /bin/ksh |
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120 | #-Q- default #!/bin/ksh |
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121 | #-Q- default ################## |
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122 | #-Q- default ## DEFAULT HOST ## |
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123 | #-Q- default ################## |
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124 | |
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125 | #************************************************************** |
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126 | # Author: Sebastien Denvil |
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127 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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128 | # $Revision:: $ Revision of last commit |
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129 | # $Author:: $ Author of last commit |
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130 | # $Date:: $ Date of last commit |
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131 | # IPSL (2006) |
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132 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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133 | # |
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134 | #************************************************************** |
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135 | |
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136 | #set -eu |
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137 | #set -vx |
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138 | |
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139 | date |
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140 | |
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141 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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142 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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143 | #-Q- ulam export OMP_NUM_THREADS=1 |
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144 | |
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145 | ######################################################################## |
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146 | |
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147 | #D- Flag to determine if this job in a standalone mode |
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148 | #D- Default : value from AA_job if any |
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149 | StandAlone=${StandAlone:=true} |
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150 | |
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151 | #D- Path to libIGCM |
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152 | #D- Default : value from AA_job if any |
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153 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
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154 | # WARNING you must check MirrorlibIGCM variable in sys library. |
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155 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
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156 | # WARNING of your running libIGCM directory. |
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157 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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158 | |
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159 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
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160 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
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161 | CompletedFlag=${CompletedFlag:=} |
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162 | |
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163 | #D- Flag to determine task type this script will perform. |
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164 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
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165 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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166 | TsTask=${TsTask:=2D} |
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167 | if [ X${TsTask} = Xempty ] ; then |
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168 | TsTask="" |
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169 | fi |
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170 | |
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171 | #D- Flag to determine if rebuild process has been performed asynchronously |
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172 | #D- Possible value true or false. |
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173 | #D- If true raw files has allready been patched by rebuild job |
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174 | #D- If false create_ts will patch the raw files |
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175 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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176 | RebuildFrequency=${RebuildFrequency:=true} |
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177 | |
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178 | #D- Flag to determine job's output directory |
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179 | #D- Default : value from libIGCM_post.ksh if any |
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180 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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181 | |
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182 | #D- Increased verbosity (1, 2, 3) |
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183 | #D- Default : value from AA_job if any |
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184 | Verbosity=${Verbosity:=3} |
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185 | |
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186 | #D- Low level debug : to bypass lib test checks and stack construction |
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187 | #D- Default : value from AA_job if any |
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188 | DEBUG_debug=${DEBUG_debug:=false} |
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189 | |
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190 | #D- TEMPORARY Flag to determine atmospheric resolution |
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191 | #D- Default : value from atmospheric driver if any |
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192 | RESOL_ATM=ALL |
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193 | |
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194 | #D- Flag to determine surface resolution |
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195 | #D- Default : value from surface driver if any |
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196 | RESOL_SRF=ALL |
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197 | |
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198 | #D- Flag to determine surface resolution |
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199 | #D- Default : value from surface driver if any |
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200 | RESOL_SBG=ALL |
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201 | |
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202 | #D- TEMPORARY Flag to determine ocean resolution |
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203 | #D- Default : value from ocean driver if any |
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204 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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205 | |
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206 | #D- TEMPORARY Flag to determine ice resolution |
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207 | #D- Default : value from ice driver if any |
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208 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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209 | |
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210 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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211 | #D- Default : value from ice driver if any |
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212 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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213 | |
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214 | ######################################################################## |
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215 | |
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216 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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217 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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218 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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219 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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220 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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221 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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222 | #------- |
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223 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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224 | |
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225 | ######################################################################## |
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226 | |
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227 | #set -vx |
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228 | |
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229 | # Useful cleaning function |
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230 | MENAGE () |
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231 | { |
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232 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
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233 | } |
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234 | |
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235 | ######################################################################## |
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236 | |
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237 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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238 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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239 | |
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240 | # ------------------------------------------------------------------ |
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241 | # Test if all was right before proceeding further |
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242 | # ------------------------------------------------------------------ |
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243 | IGCM_debug_Verif_Exit_Post |
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244 | |
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245 | if [ ${StandAlone} = true ] ; then |
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246 | CARD_DIR=${SUBMIT_DIR} |
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247 | else |
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248 | CARD_DIR=${RUN_DIR_PATH} |
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249 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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250 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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251 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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252 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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253 | fi |
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254 | |
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255 | #================================== |
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256 | # First of all |
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257 | # |
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258 | typeset option |
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259 | |
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260 | #================================== |
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261 | # Read UserChoices section: |
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262 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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263 | echo |
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264 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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265 | for option in ${config_UserChoices[*]} ; do |
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266 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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267 | eval auxprint=\${config_UserChoices_${option}} |
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268 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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269 | done |
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270 | # |
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271 | echo |
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272 | |
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273 | #================================== |
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274 | # Read Ensemble section: |
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275 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Ensemble |
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276 | echo |
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277 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Ensemble" |
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278 | for option in ${config_Ensemble[*]} ; do |
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279 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option} |
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280 | eval auxprint=\${config_Ensemble_${option}} |
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281 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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282 | done |
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283 | # |
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284 | echo |
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285 | |
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286 | #================================== |
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287 | # Read Post section: |
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288 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Post |
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289 | echo |
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290 | IGCM_debug_Print 1 "DefineArrayFromOption : config_Post" |
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291 | for option in ${config_Post[*]} ; do |
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292 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post ${option} |
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293 | eval auxprint=\${config_Post_${option}} |
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294 | IGCM_debug_Print 3 "${option} : ${auxprint}" |
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295 | done |
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296 | # |
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297 | echo |
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298 | |
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299 | #================================== |
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300 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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301 | if [ X${PackDefault} = Xtrue ] ; then |
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302 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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303 | else |
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304 | config_Post_PackFrequency=NONE |
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305 | fi |
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306 | |
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307 | #================================== |
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308 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
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309 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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310 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
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311 | fi |
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312 | |
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313 | #================================== |
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314 | #R_SAVE : Job output directory |
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315 | #R_BUFR : Job output buffered directory |
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316 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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317 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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318 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
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319 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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320 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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321 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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322 | else |
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323 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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324 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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325 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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326 | fi |
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327 | else |
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328 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
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329 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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330 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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331 | R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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332 | else |
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333 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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334 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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335 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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336 | fi |
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337 | fi |
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338 | # |
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339 | # Determine component to take care of depending on kind of task create_ts will perform |
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340 | # |
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341 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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342 | # |
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343 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
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344 | # |
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345 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
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346 | |
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347 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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348 | # |
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349 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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350 | # |
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351 | # Determine Dimension of the produced time series : 2D or 3D |
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352 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
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353 | Dimension=2D |
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354 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
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355 | Dimension=3D |
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356 | else |
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357 | Dimension="" |
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358 | fi |
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359 | |
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360 | # ------------------------------------------------------------------ |
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361 | #D- Test if all was right before entering the loop |
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362 | # ------------------------------------------------------------------ |
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363 | IGCM_debug_Verif_Exit_Post |
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364 | |
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365 | ######################################################################## |
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366 | # |
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367 | # Depending on requested time series fill following variables : |
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368 | # |
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369 | # - LISTE_FILE_${comp}[*] |
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370 | # - LISTE_VARS_${file}[*] |
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371 | # - LISTE_AXIS_${file}[*] |
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372 | # - LISTE_PATCH_${file}[*] |
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373 | ######################################################################## |
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374 | |
---|
375 | # |
---|
376 | # For each selected component determine which files need post-processing |
---|
377 | # |
---|
378 | DoJob=false |
---|
379 | for comp in ${config_ListOfComponents[*]} ; do |
---|
380 | # |
---|
381 | ActiveComp=false |
---|
382 | # |
---|
383 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
---|
384 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
385 | # |
---|
386 | card=${CARD_DIR}/COMP/${compname}.card |
---|
387 | |
---|
388 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
389 | # |
---|
390 | ListFilesName=${compname}_OutputFiles_List |
---|
391 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
392 | # |
---|
393 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
394 | # |
---|
395 | #IGCM_debug_Print 1 "Component : ${compname}" |
---|
396 | # |
---|
397 | # INITIALISATION |
---|
398 | # |
---|
399 | typeset i |
---|
400 | if [ ${FlagToRead} ] ; then |
---|
401 | ((NbFiles=${FlagToRead})) |
---|
402 | ((i=${NbFiles})) |
---|
403 | else |
---|
404 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
405 | i=2 |
---|
406 | fi |
---|
407 | # |
---|
408 | until [ $i -gt $NbFiles ]; do |
---|
409 | # |
---|
410 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
411 | # |
---|
412 | if [ X${flag_post} != XNONE ] ; then |
---|
413 | # |
---|
414 | # For each comp and each file who needs post-processing |
---|
415 | # determine which variables need time series. |
---|
416 | # |
---|
417 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
---|
418 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
---|
419 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
---|
420 | # |
---|
421 | # If TimeSeriesVars list is empty we skip |
---|
422 | # |
---|
423 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
---|
424 | # |
---|
425 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
426 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
---|
427 | (( i=i+3 )) |
---|
428 | continue |
---|
429 | # |
---|
430 | fi |
---|
431 | # |
---|
432 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
---|
433 | # |
---|
434 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
---|
435 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
436 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
---|
437 | (( i=i+3 )) |
---|
438 | continue |
---|
439 | fi |
---|
440 | # |
---|
441 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
---|
442 | # |
---|
443 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
---|
444 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
---|
445 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
---|
446 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
---|
447 | (( i=i+3 )) |
---|
448 | continue |
---|
449 | fi |
---|
450 | fi |
---|
451 | # |
---|
452 | # Now on we know we have things to do |
---|
453 | # |
---|
454 | |
---|
455 | # |
---|
456 | # We need coordinates axis to properly fill produced time series |
---|
457 | # |
---|
458 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
---|
459 | # |
---|
460 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
---|
461 | # |
---|
462 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
---|
463 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
---|
464 | (( i=i+3 )) |
---|
465 | continue |
---|
466 | # |
---|
467 | fi |
---|
468 | # |
---|
469 | # We need LIST of variables not allready produced (useful for standalone mode) |
---|
470 | # |
---|
471 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
---|
472 | case ${FlagDir} in |
---|
473 | *Y) TS_Dir=TS_YE ;; |
---|
474 | *M) TS_Dir=TS_MO ;; |
---|
475 | *D) TS_Dir=TS_DA ;; |
---|
476 | HF) TS_Dir=TS_HF ;; |
---|
477 | 3H) TS_Dir=TS_HF ;; |
---|
478 | INS) TS_Dir=TS_INS ;; |
---|
479 | esac |
---|
480 | # |
---|
481 | count=0 |
---|
482 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
---|
483 | # |
---|
484 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
485 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
---|
486 | # |
---|
487 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
---|
488 | if [ ! $? = 0 ] ; then |
---|
489 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
---|
490 | ActiveComp=true |
---|
491 | (( count = count + 1 )) |
---|
492 | fi |
---|
493 | done |
---|
494 | # |
---|
495 | if [ ${count} -gt 0 ] ; then |
---|
496 | # |
---|
497 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
---|
498 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
---|
499 | # |
---|
500 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
501 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
---|
502 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
---|
503 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
---|
504 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
---|
505 | if [ Xload${Patch} != X ] ; then |
---|
506 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
---|
507 | eval load${Patch}=loaded |
---|
508 | fi |
---|
509 | done |
---|
510 | fi |
---|
511 | fi |
---|
512 | fi |
---|
513 | fi |
---|
514 | (( i=i+3 )) |
---|
515 | done |
---|
516 | fi |
---|
517 | # |
---|
518 | if [ ${ActiveComp} = true ] ; then |
---|
519 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
---|
520 | fi |
---|
521 | done |
---|
522 | |
---|
523 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
---|
524 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
---|
525 | |
---|
526 | ######################################################################## |
---|
527 | # |
---|
528 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
---|
529 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
---|
530 | # |
---|
531 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
---|
532 | # - especially for IDRiS |
---|
533 | # - no special protection against "command too long" ! |
---|
534 | # - libIGCM_sys should handle that or modify following code part |
---|
535 | # |
---|
536 | ######################################################################## |
---|
537 | |
---|
538 | if [ ${StandAlone} != true ] ; then |
---|
539 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
540 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
541 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
---|
542 | |
---|
543 | #if [ X${Running_Flag} = Xy ] ; then |
---|
544 | # # Time Series Job allready running |
---|
545 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
546 | # exit |
---|
547 | #fi |
---|
548 | # Now run.card know we are running |
---|
549 | |
---|
550 | |
---|
551 | |
---|
552 | |
---|
553 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
554 | |
---|
555 | |
---|
556 | |
---|
557 | |
---|
558 | |
---|
559 | # Get information from last execution |
---|
560 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
561 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
562 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
563 | fi |
---|
564 | |
---|
565 | # Is it the first submission or not ? |
---|
566 | |
---|
567 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
568 | # First Time Series Submission |
---|
569 | FIRST_PASS=TRUE |
---|
570 | Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin) |
---|
571 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
572 | else |
---|
573 | # Last Completed Time Series |
---|
574 | FIRST_PASS=FALSE |
---|
575 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
576 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
577 | for comp in ${config_ListOfComponents[*]} ; do |
---|
578 | # |
---|
579 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
580 | # |
---|
581 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
582 | # |
---|
583 | #set -A liste_file |
---|
584 | unset liste_file |
---|
585 | # |
---|
586 | file_path=${R_SAVE}/${comp}/Analyse |
---|
587 | # |
---|
588 | i=0 |
---|
589 | file=${NULL_STR} |
---|
590 | # |
---|
591 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
592 | # |
---|
593 | # Determine in which output can we find file |
---|
594 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
595 | # |
---|
596 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
597 | case ${FlagDir} in |
---|
598 | *Y) TS_Dir=TS_YE ;; |
---|
599 | *M) TS_Dir=TS_MO ;; |
---|
600 | *D) TS_Dir=TS_DA ;; |
---|
601 | HF) TS_Dir=TS_HF ;; |
---|
602 | 3H) TS_Dir=TS_HF ;; |
---|
603 | INS) TS_Dir=TS_INS ;; |
---|
604 | esac |
---|
605 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
606 | # |
---|
607 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
608 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
609 | # |
---|
610 | done |
---|
611 | done |
---|
612 | if [ X${file} != X${NULL_STR} ] ; then |
---|
613 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
614 | # Even if some files are missing we tried to continue |
---|
615 | # Either ListVar in compname.card are asked but not present in original history file |
---|
616 | # Either a previous TS task failed |
---|
617 | ExitFlag=false |
---|
618 | IGCM_debug_Verif_Exit_Post |
---|
619 | fi |
---|
620 | done |
---|
621 | # |
---|
622 | LEVEL=0 |
---|
623 | # |
---|
624 | fi |
---|
625 | |
---|
626 | ######################################################################## |
---|
627 | # |
---|
628 | # DEFINE LOOP PARAMETERS |
---|
629 | # |
---|
630 | ######################################################################## |
---|
631 | |
---|
632 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
633 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
634 | |
---|
635 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
636 | |
---|
637 | if [ ${DoJob} = true ] ; then |
---|
638 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
639 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
640 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} ) |
---|
641 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
642 | done |
---|
643 | else |
---|
644 | NBRE_FILE_TOT=0 |
---|
645 | fi |
---|
646 | |
---|
647 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
648 | NBRE_TOUR=1 |
---|
649 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
650 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
651 | else |
---|
652 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
653 | fi |
---|
654 | |
---|
655 | CURRENT_LOOP=1 |
---|
656 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
657 | # WE HAVE 3 LEVELS |
---|
658 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
659 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
660 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
661 | |
---|
662 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
663 | |
---|
664 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
665 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
666 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
667 | |
---|
668 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
669 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
670 | else |
---|
671 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
672 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
673 | fi |
---|
674 | |
---|
675 | DATE_FIN=${PeriodDateEnd} |
---|
676 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
677 | |
---|
678 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
679 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
680 | |
---|
681 | LEVEL=1 |
---|
682 | DEPOT="TRUE" |
---|
683 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
684 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
685 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
686 | |
---|
687 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
688 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
689 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
690 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
691 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
692 | else |
---|
693 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
694 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
695 | fi |
---|
696 | |
---|
697 | (( TotLength = 0 )) |
---|
698 | COMPTEUR=1 |
---|
699 | DATE_LOOP=${DATE_COURANTE} |
---|
700 | |
---|
701 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
702 | # |
---|
703 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
704 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
705 | (( TotLength = TotLength + Length )) |
---|
706 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
707 | # |
---|
708 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
709 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
710 | |
---|
711 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
712 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
713 | DEPOT="FALSE" |
---|
714 | LEVEL=2 |
---|
715 | else |
---|
716 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
717 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
718 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
719 | |
---|
720 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
721 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
722 | DATE_FIN=${PeriodDateEnd} |
---|
723 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
724 | |
---|
725 | LEVEL=3 |
---|
726 | DEPOT="TRUE" |
---|
727 | FLAG_B="TRUE" |
---|
728 | fi |
---|
729 | |
---|
730 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
731 | for comp in ${config_ListOfComponents[*]} ; do |
---|
732 | # |
---|
733 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
734 | # |
---|
735 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
736 | # |
---|
737 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
738 | # |
---|
739 | i=0 |
---|
740 | # |
---|
741 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
742 | # |
---|
743 | # Determine in which output can we find file |
---|
744 | # IE : Output/MO or Output/DA or ... |
---|
745 | # |
---|
746 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
747 | case ${FlagDir} in |
---|
748 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
749 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
750 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
751 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
752 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
753 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
754 | *) |
---|
755 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
756 | IGCM_sys_Exit "Job create_ts" ;; |
---|
757 | esac |
---|
758 | |
---|
759 | # Initialize array |
---|
760 | #set -A liste_file |
---|
761 | #set -A liste_file_tmp |
---|
762 | unset liste_file |
---|
763 | unset liste_file_tmp |
---|
764 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
765 | |
---|
766 | COMPTEUR=1 |
---|
767 | DATE_LOOP=${DATE_COURANTE} |
---|
768 | |
---|
769 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
770 | # |
---|
771 | Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end) |
---|
772 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
773 | |
---|
774 | Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
775 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
776 | |
---|
777 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
778 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
779 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
780 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
781 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
782 | # |
---|
783 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
784 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
785 | |
---|
786 | # Get selected files |
---|
787 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
788 | IGCM_debug_Verif_Exit_Post |
---|
789 | |
---|
790 | # Apply IGCM_Patch if needed |
---|
791 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
792 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
793 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
794 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
795 | IGCM_${Patch} ${file_t} |
---|
796 | IGCM_debug_Verif_Exit_Post |
---|
797 | done |
---|
798 | done |
---|
799 | fi |
---|
800 | fi |
---|
801 | |
---|
802 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
803 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
804 | Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end) |
---|
805 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
806 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
807 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
808 | |
---|
809 | liste_coord=" " |
---|
810 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
811 | liste_coord=${liste_coord}${axis}"," |
---|
812 | done |
---|
813 | |
---|
814 | # Time axis must be the last dimension |
---|
815 | time_axis=${axis} |
---|
816 | |
---|
817 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
818 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
819 | # |
---|
820 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
821 | # WE CONCATENATE WITH EXISTING FILES |
---|
822 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
823 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
824 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
---|
825 | # |
---|
826 | IGCM_sys_Rm ${file1} |
---|
827 | if [ ! "${DEPOT}" = "TRUE" ] ; then |
---|
828 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
829 | # "${file1} = file_before ? |
---|
830 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
831 | fi |
---|
832 | |
---|
833 | ExitFlag=false |
---|
834 | else |
---|
835 | # OR NOT |
---|
836 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
837 | fi |
---|
838 | |
---|
839 | # |
---|
840 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
841 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
842 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
843 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
844 | # |
---|
845 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
846 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
847 | if [ ! "X${file1}" = "X" ] ; then |
---|
848 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
849 | fi |
---|
850 | # |
---|
851 | if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then |
---|
852 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
---|
853 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
---|
854 | # |
---|
855 | # Compute yearly average considering calendar |
---|
856 | # and set date of the mid year to 01/07 at 00:00 |
---|
857 | IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm -selvar,${var} ${file_out} ${file_out_YE} |
---|
858 | # Extract all ancillary variables except $var, they will be appended after the cdo command |
---|
859 | # Needed because cdo applies calculs on all variables |
---|
860 | IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc |
---|
861 | # This will remove the time axis because cdo rewrites severely with only considered useful variables |
---|
862 | IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc 2>/dev/null |
---|
863 | if [ $? -eq 0 ] ; then |
---|
864 | # Now append all ancillary variables if previous cdo operator ok |
---|
865 | IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE} |
---|
866 | fi |
---|
867 | |
---|
868 | # Put global history attribut |
---|
869 | IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE} |
---|
870 | # |
---|
871 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
---|
872 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
---|
873 | IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc |
---|
874 | fi |
---|
875 | # |
---|
876 | IGCM_sys_Rm ${file_out} |
---|
877 | ExitFlag=false |
---|
878 | # |
---|
879 | fi |
---|
880 | # |
---|
881 | done # for var in ${liste_var} ; do |
---|
882 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
883 | done # for file in ${liste_file_brut} do |
---|
884 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
885 | # GO AHEAD IN DEEPEST LOOP |
---|
886 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
887 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
888 | # FINISH |
---|
889 | |
---|
890 | # DODS copy |
---|
891 | for comp in ${config_ListOfComponents[*]} ; do |
---|
892 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
---|
893 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
894 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
895 | done |
---|
896 | done |
---|
897 | |
---|
898 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
899 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
900 | |
---|
901 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
902 | export listVarEnv |
---|
903 | |
---|
904 | #D- |
---|
905 | # -------------------------------------------------------------------- |
---|
906 | #D- Test if all was right |
---|
907 | # -------------------------------------------------------------------- |
---|
908 | IGCM_debug_Verif_Exit_Post |
---|
909 | # -------------------------------------------------------------------- |
---|
910 | #D- Submit MONITORING |
---|
911 | # -------------------------------------------------------------------- |
---|
912 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
---|
913 | Script_Post_Output=monitoring.${PeriodDateEnd} |
---|
914 | IGCM_sys_QsubPost monitoring |
---|
915 | fi |
---|
916 | |
---|
917 | #D- |
---|
918 | # -------------------------------------------------------------------- |
---|
919 | #D- Update the run.card |
---|
920 | # -------------------------------------------------------------------- |
---|
921 | if [ ${StandAlone} != true ] ; then |
---|
922 | # Put in run.card end period of time series |
---|
923 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
924 | # We have finish the job ! |
---|
925 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
926 | fi |
---|
927 | |
---|
928 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
929 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
930 | |
---|
931 | date |
---|