1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Jacques Belier |
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5 | # Contact: |
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6 | # $Revision:: $ Revision of last commit |
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7 | # $Author:: $ Author of last commit |
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8 | # $Date:: $ Date of last commit |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # |
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12 | #************************************************************** |
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13 | #--------------------------------------------------------------------- |
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14 | #- Installation of jobs according to environment |
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15 | #--------------------------------------------------------------------- |
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16 | function ins_job_Usage |
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17 | { |
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18 | print - " |
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19 | ins_job installs the jobs in the directories which contain a file config.card |
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20 | |
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21 | ins_job also installs the jobs for post-processing in libIGCM folder. |
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22 | |
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23 | ins_job must be launched on the host on which the job will be submitted. |
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24 | |
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25 | Usage : |
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26 | ${b_n} [-h] [-v] [-e] |
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27 | or on irene/TGCC : |
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28 | ${b_n} [-h] [-v] [-e] [-p project] [-q type_of_node] [-c number of cores] |
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29 | or on jean-zay /IDRIS |
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30 | ${b_n} [-h] [-v] [-e] [-p project] [-m MPI environment] |
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31 | Options : |
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32 | -h : help |
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33 | -v : verbose mode |
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34 | -e : turn on ensemble mode (hindcast/forecast or date restart) |
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35 | -f : ins_job force overwrite jobs if they already exist |
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36 | |
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37 | More options on irene only : |
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38 | -p project : add default project on irene |
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39 | -q type_of_node : add default type of nodes for postprocessing on irene skylake/xlarge |
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40 | -c number of cores : add default number of cores for postprocessing on irene 1-112 |
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41 | |
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42 | More options on jean-zay only : |
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43 | -p project : add default project on irene |
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44 | -m MPI environment : add default MPI environment (Intel MPI or IBM MPI) |
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45 | -t wall time : change default wall time |
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46 | " |
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47 | } |
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48 | function ins_job_Warning |
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49 | { |
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50 | [[ ${x_v} = 'verbose' ]] && print - "\n############### WARNING ###############"; |
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51 | [[ ${x_v} = 'verbose' ]] && print - "File ${n_f} already exists\nin directory ${j}"; |
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52 | [[ ${x_v} = 'verbose' ]] && print - "You must delete this file to update !"; |
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53 | } |
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54 | |
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55 | function ins_job_Check_JobName |
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56 | { |
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57 | verif=${JobName##[a-zA-Z]*(?([.\-])[a-zA-Z0-9])} |
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58 | |
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59 | if [ ${#verif} -ne 0 ] ; then |
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60 | echo "################ ERROR ################" |
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61 | echo "${JobName} is invalid." |
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62 | echo "- JobName can only contain alphanumeric characters, \".\" and \"-\"" |
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63 | echo "- JobName must start with a letter" |
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64 | |
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65 | ((NbErr=NbErr+1)) |
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66 | |
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67 | Status=1 |
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68 | else |
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69 | Status=0 |
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70 | fi |
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71 | |
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72 | return ${Status} |
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73 | } |
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74 | |
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75 | #- |
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76 | # dirname and basename |
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77 | #- |
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78 | d_n=$(dirname ${0}); b_n=$(basename ${0}); |
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79 | #- |
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80 | # Retrieving and validation of the options |
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81 | #- |
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82 | x_v='silencious'; |
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83 | x_e=false; |
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84 | x_f=false; |
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85 | x_p=false; |
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86 | x_q=false; |
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87 | x_c=false; |
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88 | x_m=false; |
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89 | x_t=false; |
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90 | while getopts :hvefc:p:m:q:s:t: V ; do |
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91 | case $V in |
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92 | (h) ins_job_Usage; exit 0;; |
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93 | (v) x_v='verbose';; |
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94 | (e) x_e=true;; |
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95 | (f) x_f=true;; |
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96 | (p) x_p=true |
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97 | ProjectID=${OPTARG} ;; |
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98 | (q) x_q=true |
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99 | ProjectNode=${OPTARG} ;; |
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100 | (c) x_c=true |
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101 | ProjectCore=${OPTARG} ;; |
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102 | (m) x_m=true |
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103 | MPIEnvironment=${OPTARG} ;; |
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104 | (t) x_t=true |
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105 | WallTime=${OPTARG} ;; |
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106 | (:) echo ${b_n}" : -"${OPTARG}" option : missing value" 1>&2; |
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107 | exit 2;; |
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108 | (\?) echo ${b_n}" : -"${OPTARG}" option : not supported" 1>&2; |
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109 | exit 2;; |
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110 | esac |
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111 | done |
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112 | [ ${x_v} = 'silencious' ] && export DEBUG_sys=false |
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113 | shift $(($OPTIND-1)); |
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114 | #- |
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115 | # Define working files |
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116 | #- |
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117 | F_MOD=$(cd ${d_n}'/..';/bin/pwd;) |
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118 | # [[ ${F_MOD##*/} != 'modipsl' ]] && \ |
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119 | # { print - "directory 'modipsl' unreachable"; exit 3; } |
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120 | W_W=${d_n}'/../libIGCM' |
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121 | [[ ! -d ${W_W} ]] && { print - "${W_W} unreachable"; exit 3; } |
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122 | libIGCM=$(cd ${W_W};/bin/pwd;) |
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123 | F_JOB=${libIGCM}'/AA_job'; |
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124 | [[ ! -f ${F_JOB} ]] && { print - "${F_JOB} unreachable"; exit 3; } |
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125 | F_JOB_DEBUG=${libIGCM}'/AA_job_debug'; |
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126 | [[ ! -f ${F_JOB_DEBUG} ]] && { print - "${F_JOB_DEBUG} unreachable"; exit 3; } |
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127 | F_RCI=${libIGCM}'/run.card.init'; |
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128 | [[ ! -f ${F_RCI} ]] && { print - "${F_RCI} unreachable"; exit 3; } |
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129 | |
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130 | |
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131 | print "Start ins_job\n" |
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132 | print "Create job in current folder and post-treatment jobs in libIGCM folder.\n" |
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133 | |
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134 | if [ ${x_f} = 'false' ] ; then |
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135 | answer="" |
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136 | print "Do you want to overwrite existing jobs? Answer yes/no: (or hit enter for no) " |
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137 | read answer |
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138 | if ( [ X${answer} == Xyes ] || [ X${answer} == Xy ] ) ; then |
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139 | x_f=true |
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140 | fi |
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141 | fi |
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142 | |
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143 | if [ ${x_f} == 'false' ] ; then |
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144 | print "The jobs will only be created if they don't already exist. No jobs will be overwritten.\n" |
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145 | else |
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146 | print "All existing jobs will be overwritten.\n" |
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147 | fi |
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148 | |
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149 | |
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150 | #- |
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151 | # Accessing to functions (without stack) |
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152 | #- |
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153 | # No verbosity (0, 1, 2, 3) |
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154 | Verbosity=0 |
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155 | # No de debug |
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156 | DEBUG_debug=false |
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157 | # Dont move libIGCM |
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158 | MirrorlibIGCM=false |
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159 | # Behave like computing job |
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160 | TaskType=computing |
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161 | # Source libIGCM |
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162 | print "Source modules and functions from libIGCM:" |
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163 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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164 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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165 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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166 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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167 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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168 | if [ $x_e = 'true' ] ; then |
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169 | . ${libIGCM}/libIGCM_ensemble/libIGCM_ensemble.ksh |
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170 | fi |
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171 | |
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172 | |
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173 | #- |
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174 | [[ ${x_v} = 'verbose' ]] && \ |
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175 | { |
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176 | print - ""; |
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177 | print - '--- Host : '${SYSTEM}; |
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178 | print - '--- modipsl : '${F_MOD}; |
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179 | print - '--- libIGCM : '${libIGCM}; |
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180 | print - '--- basic job : '${F_JOB}; |
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181 | print - '--- basic card : '${F_RCI}; |
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182 | } |
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183 | #- |
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184 | [[ ${x_v} = 'verbose' ]] && print - "\nInstallation of jobs for '${SYSTEM}'"; |
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185 | #- |
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186 | |
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187 | NbErr=0 |
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188 | |
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189 | #- |
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190 | # Define Project parameters to set up jobs header for Irene (TGCC) |
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191 | # on Irene define ProjectID and ProjectCore : option or answer |
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192 | # on Irene ProjectNode default projectnode set to xlarge since 17/10/2018 |
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193 | #- |
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194 | |
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195 | |
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196 | if [ X"${SYSTEM}" == "Xirene" ] ; then |
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197 | |
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198 | #- set ProjectID if required |
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199 | if ( ! ${x_p} ) ; then |
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200 | print - "Wait for the next question ..." |
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201 | #- default ProjectID |
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202 | ProjectID=$( ccc_myproject | grep -i irene |grep -i skylake | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u | grep -v gencmip6 | head -n 1 ) |
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203 | answer="" |
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204 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | grep -i irene | grep -i skylake | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u ) ) or other xxxcmip6 : $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ; echo ) " |
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205 | read answer |
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206 | |
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207 | if [ "X${answer}" != "X" ] ; then |
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208 | ProjectID=${answer} |
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209 | fi |
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210 | |
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211 | fi # if ( ! ${x_p} ) |
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212 | |
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213 | echo ProjectID is ${ProjectID} at Irene |
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214 | |
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215 | |
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216 | # set ProjectNode if required |
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217 | if ( ! ${x_q} ) ; then |
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218 | #- default ProjectNode |
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219 | ProjectNode="xlarge" |
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220 | #- is xlarge possible for ${ProjectID} ? |
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221 | echo $(ccc_myproject | grep -i irene | grep -i xlarge | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u) $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ) | grep ${ProjectID} >/dev/null 2>&1 || ProjectNode="xlarge" |
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222 | |
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223 | if [ "X${ProjectNode}" == "Xxlarge" ] ; then |
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224 | answerOK=false |
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225 | |
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226 | while ( ! ${answerOK} ) ; do |
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227 | answer="" |
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228 | print - "Hit Enter or give TYPE OF NODE required for post-processing (default is \"${ProjectNode}\"), possible types of nodes are \"skylake\" or \"xlarge\" : " |
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229 | read answer |
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230 | [ "X${answer}" == "X" ] || [ "X${answer}" == "Xskylake" ] || [ "X${answer}" == "Xxlarge" ] && answerOK=true |
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231 | done |
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232 | |
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233 | if [ "X${answer}" != "X" ] ; then |
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234 | ProjectNode=${answer} |
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235 | fi |
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236 | |
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237 | else |
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238 | print - "PostProcessing will be done on ${ProjectNode}" |
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239 | fi |
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240 | |
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241 | fi # if ( ! ${x_q} ) |
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242 | echo ProjectNode for post-processing is ${ProjectNode} at Irene |
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243 | |
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244 | #- ProjectNode is known (option or answer) set ProjectCoreMax |
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245 | [ "${ProjectNode}" = "xlarge" ] && ProjectCoreMax="112" || ProjectCoreMax="48" |
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246 | #- ProjectCoreMax is 48 for standard and 112 for xlarge |
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247 | |
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248 | if ( ! ${x_c} ) ; then |
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249 | #- ProjectNode is known (option or answer), set ProjectCore default |
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250 | [ "${ProjectNode}" = "xlarge" ] && ProjectCore="8" || ProjectCore="4" |
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251 | |
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252 | # let check minimum/maximum value 1/${ProjectCoreMax} |
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253 | |
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254 | answerOK=false |
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255 | |
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256 | while ( ! ${answerOK} ) ; do |
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257 | answer="" |
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258 | print - "possible numbers of cores are \"1\" to \"${ProjectCoreMax}\" for ${ProjectNode} : " |
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259 | print - "Hit Enter or give NUMBER OF CORES required for post-processing (default is \"${ProjectCore}\")" |
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260 | read answer |
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261 | [ "X${answer}" == "X" ] || [ ${answer} -ge 1 -a ${answer} -le ${ProjectCoreMax} ] && answerOK=true |
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262 | done |
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263 | |
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264 | if [ "X${answer}" != "X" ] ; then |
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265 | ProjectCore=${answer} |
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266 | fi |
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267 | |
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268 | fi # if ( ! ${x_c} ) |
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269 | |
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270 | echo ProjectCore for post-processing is ${ProjectCore} |
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271 | #- ProjectCore is set (option or answer) |
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272 | |
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273 | #- set WallTime if required |
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274 | if ( ! ${x_t} ) ; then |
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275 | #- default WallTime 1800 s |
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276 | WallTime=1800 |
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277 | answer="" |
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278 | print - "Hit Enter or give required wall time in seconds for computing job (default is \"${WallTime}\" seconds, maximum is 86400 seconds) " |
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279 | read answer |
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280 | |
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281 | if [ "X${answer}" != "X" ] ; then |
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282 | WallTime=${answer} |
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283 | fi |
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284 | |
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285 | fi # if ( ! ${x_t} ) |
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286 | |
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287 | echo Wall time limit is ${WallTime} seconds |
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288 | |
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289 | elif [ X"${SYSTEM}" == "Xirene-amd" ] ; then |
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290 | |
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291 | #- set ProjectID if required |
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292 | if ( ! ${x_p} ) ; then |
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293 | print - "Wait for the next question ..." |
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294 | #- default ProjectID |
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295 | ProjectID=$( ccc_myproject | grep -i irene |grep -i rome | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u | grep -v gencmip6 | head -n 1 ) |
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296 | answer="" |
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297 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | grep -i irene | grep -i rome | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u ) ) or other xxxcmip6 : $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ; echo ) " |
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298 | read answer |
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299 | |
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300 | if [ "X${answer}" != "X" ] ; then |
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301 | ProjectID=${answer} |
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302 | fi |
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303 | |
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304 | fi # if ( ! ${x_p} ) |
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305 | |
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306 | echo ProjectID is ${ProjectID} at Irene-amd |
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307 | |
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308 | # set ProjectNode if required |
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309 | if ( ! ${x_q} ) ; then |
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310 | #- default ProjectNode |
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311 | ProjectNode="rome" |
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312 | #- is xlarge possible for ${ProjectID} ? |
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313 | echo $(ccc_myproject | grep -i irene | grep -i xlarge | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | grep -v gencmip6 | sort -u) $(for i in $(groups) ; do echo $i|grep -v gencmip6|grep .cmip6 1>/dev/null 2>&1 && echo -n $i " " ; done ) | grep ${ProjectID} >/dev/null 2>&1 || ProjectNode="rome" |
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314 | |
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315 | if [ "X${ProjectNode}" == "Xxlarge" ] ; then |
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316 | answerOK=false |
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317 | |
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318 | while ( ! ${answerOK} ) ; do |
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319 | answer="" |
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320 | print - "Hit Enter or give TYPE OF NODE required for post-processing (default is \"${ProjectNode}\"), possible types of nodes are \"rome\" : " |
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321 | read answer |
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322 | [ "X${answer}" == "X" ] || [ "X${answer}" == "Xrome" ] && answerOK=true |
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323 | done |
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324 | |
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325 | if [ "X${answer}" != "X" ] ; then |
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326 | ProjectNode=${answer} |
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327 | fi |
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328 | |
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329 | else |
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330 | print - "PostProcessing will be done on ${ProjectNode}" |
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331 | fi |
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332 | |
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333 | fi # if ( ! ${x_q} ) |
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334 | echo ProjectNode for post-processing is ${ProjectNode} at Irene-amd |
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335 | |
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336 | #- ProjectNode is known (option or answer) set ProjectCoreMax |
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337 | [ "${ProjectNode}" = "xlarge" ] && ProjectCoreMax="112" || ProjectCoreMax="48" |
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338 | #- ProjectCoreMax is 48 for standard and 112 for xlarge |
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339 | |
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340 | if ( ! ${x_c} ) ; then |
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341 | #- ProjectNode is known (option or answer), set ProjectCore default |
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342 | [ "${ProjectNode}" = "xlarge" ] && ProjectCore="8" || ProjectCore="4" |
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343 | |
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344 | # let check minimum/maximum value 1/${ProjectCoreMax} |
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345 | |
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346 | answerOK=false |
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347 | |
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348 | while ( ! ${answerOK} ) ; do |
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349 | answer="" |
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350 | print - "possible numbers of cores are \"1\" to \"${ProjectCoreMax}\" for ${ProjectNode} : " |
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351 | print - "Hit Enter or give NUMBER OF CORES required for post-processing (default is \"${ProjectCore}\")" |
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352 | read answer |
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353 | [ "X${answer}" == "X" ] || [ ${answer} -ge 1 -a ${answer} -le ${ProjectCoreMax} ] && answerOK=true |
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354 | done |
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355 | |
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356 | if [ "X${answer}" != "X" ] ; then |
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357 | ProjectCore=${answer} |
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358 | fi |
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359 | |
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360 | fi # if ( ! ${x_c} ) |
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361 | |
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362 | echo ProjectCore for post-processing is ${ProjectCore} |
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363 | #- ProjectCore is set (option or answer) |
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364 | |
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365 | #- set WallTime if required |
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366 | if ( ! ${x_t} ) ; then |
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367 | #- default WallTime 1800 s |
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368 | WallTime=1800 |
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369 | answer="" |
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370 | print - "Hit Enter or give required wall time in seconds for computing job (default is \"${WallTime}\" seconds, maximum is 86400 seconds) " |
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371 | read answer |
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372 | |
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373 | if [ "X${answer}" != "X" ] ; then |
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374 | WallTime=${answer} |
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375 | fi |
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376 | |
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377 | fi # if ( ! ${x_t} ) |
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378 | |
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379 | echo Wall time limit is ${WallTime} seconds |
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380 | |
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381 | elif [ X"${SYSTEM}" == "Xjeanzay" ] ; then |
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382 | |
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383 | #- set ProjectID if required |
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384 | if ( ! ${x_p} ) ; then |
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385 | print - "Wait for the next question ..." |
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386 | #- default ProjectID |
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387 | ProjectID=$( echo $IDRPROJ ) |
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388 | answer="" |
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389 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are: $( groups ; echo ) " |
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390 | read answer |
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391 | |
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392 | if [ "X${answer}" != "X" ] ; then |
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393 | ProjectID=${answer} |
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394 | fi |
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395 | |
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396 | fi # if ( ! ${x_p} ) |
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397 | |
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398 | echo ProjectID is ${ProjectID} at Jean-Zay |
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399 | |
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400 | #- set WallTime if required |
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401 | if ( ! ${x_t} ) ; then |
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402 | #- default WallTime 30 minutes |
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403 | WallTime=30 |
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404 | answer="" |
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405 | print - "Hit Enter or give required wall time in minutes for computing job (default is \"${WallTime}\" minutes, maximum is 1200 minutes) " |
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406 | read answer |
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407 | |
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408 | if [ "X${answer}" != "X" ] ; then |
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409 | WallTime=${answer} |
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410 | fi |
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411 | |
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412 | fi # if ( ! ${x_t} ) |
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413 | |
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414 | echo Wall time limit is ${WallTime} minutes |
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415 | |
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416 | elif [ X"${SYSTEM}" == "Xada" ] ; then |
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417 | if ( ! ${x_m} ) ; then |
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418 | MPIEnvironment=IBM |
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419 | # Intel MPI Environment. |
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420 | answerOK=false |
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421 | while ( ! ${answerOK} ) ; do |
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422 | answer="" |
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423 | print - "Hit Enter or give MPI Environement (default is ${MPIEnvironment}), possible MPI environments are IBM (MPI IBM) and Intel (MPI Intel) :" |
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424 | read answer |
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425 | [ "X${answer}" == "X" ] || [ "X${answer}" == "XIBM" ] || [ "X${answer}" == "XIntel" ] && answerOK=true |
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426 | done |
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427 | |
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428 | if [ "X${answer}" != "X" ] ; then |
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429 | MPIEnvironment=${answer} |
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430 | fi |
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431 | fi # if ( ! ${x_pm} ) |
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432 | echo MPIEnvironment is ${MPIEnvironment} |
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433 | |
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434 | elif [ X"${SYSTEM}" == "Xobelix" ] || [ X"${SYSTEM}" == "Xifort_CICLAD" ] ; then |
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435 | # obelix, ciclad, climserv |
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436 | echo "" |
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437 | echo "You need to check and maybe adapt headers in the main job especially the line: " |
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438 | echo " #PBS -l nodes=x:ppn=y " |
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439 | echo "where x is the number of nodes, y the number of cores per node and x*y is the total number of cores for the job. " |
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440 | echo "y must not be bigger than the maximum numer of cores per node on the machine (often 8 or 16)." |
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441 | fi # if [ X"${SYSTEM}" == "Xirene" ] |
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442 | |
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443 | #- |
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444 | # Define the pattern string to substitute |
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445 | #- |
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446 | W_P='#-Q- '; W_W=${W_P}${SYSTEM}' '; |
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447 | #- |
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448 | # Extract list of 'config.card' files |
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449 | # and create jobs with AA_job |
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450 | #- |
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451 | F_CFG='config.card'; |
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452 | F_CFG_ENS='ensemble.card'; |
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453 | SUBMIT_DIR_ENS=$( pwd ) |
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454 | for i in $( pwd )/config.card |
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455 | do |
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456 | if [ ! -f $i ] ; then |
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457 | echo "" |
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458 | echo "################## WARNING ##################" |
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459 | echo "No config.card available in current directory" |
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460 | echo "" |
---|
461 | continue |
---|
462 | fi |
---|
463 | |
---|
464 | |
---|
465 | j=$(cd ${i%/*};/bin/pwd;) |
---|
466 | n_f=${F_RCI##*/}; |
---|
467 | |
---|
468 | if [ ! X$( echo ${j} | grep EXPERIMENTS ) = X ] ; then |
---|
469 | # Do not treat config.card if it is in sub-directory of EXPERIMENTS |
---|
470 | # Continue to next config.card |
---|
471 | continue |
---|
472 | else |
---|
473 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
---|
474 | fi |
---|
475 | |
---|
476 | # Find out if new structure and set .resol filename |
---|
477 | if [ -d ${j}/EXPERIMENTS ] && [ -d ${j}/GENERAL ] ; then |
---|
478 | # New Structure |
---|
479 | [[ ${x_v} = 'verbose' ]] && echo "This is new configuration structure" |
---|
480 | new_struct=yes |
---|
481 | resolfile=$j/.resol |
---|
482 | else |
---|
483 | # Old Structure |
---|
484 | new_struct=no |
---|
485 | resolfile=$j/../.resol |
---|
486 | fi |
---|
487 | |
---|
488 | # Get all variables declared in section UserChoices in config.card |
---|
489 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} UserChoices |
---|
490 | # Set default values |
---|
491 | config_UserChoices_ExpType="" |
---|
492 | RESOL_ATM_3D=this_is_a_test_string |
---|
493 | RESOL=this_is_another_test_string |
---|
494 | ResolAtm=this_is_a_new_another_test |
---|
495 | typeset option |
---|
496 | for option in ${config_UserChoices[*]} ; do |
---|
497 | IGCM_card_DefineVariableFromOption ${j}'/'${F_CFG} UserChoices ${option} |
---|
498 | done |
---|
499 | |
---|
500 | # Find the JobName : JobName might contain the variable RESOL_ATM_3D that will be replaced by what is in .resol file |
---|
501 | if [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL_ATM_3D} ) = X ] ; then |
---|
502 | TRUERESOL=$( tail -1 $resolfile | awk "-F=" '{print $2}' ) |
---|
503 | echo TRUERESOL = $TRUERESOL |
---|
504 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL_ATM_3D}/${TRUERESOL}/" ) |
---|
505 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
---|
506 | elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL} ) = X ] ; then |
---|
507 | TRUERESOL=$( head -1 $resolfile ) |
---|
508 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL}/${TRUERESOL}/" ) |
---|
509 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
---|
510 | elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${ResolAtm} ) = X ] ; then |
---|
511 | TRUERESOL=${config_UserChoices_ResolAtm} |
---|
512 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${ResolAtm}/${TRUERESOL}/" ) |
---|
513 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
---|
514 | else |
---|
515 | JobName=${config_UserChoices_JobName} |
---|
516 | fi |
---|
517 | |
---|
518 | # Check JobName validity : only alphanumerical characters, "-" and "." are authorized |
---|
519 | ins_job_Check_JobName |
---|
520 | RetCode=$? |
---|
521 | [[ $RetCode -gt 0 ]] && continue |
---|
522 | |
---|
523 | [[ ${x_v} = 'verbose' ]] && echo "JobName=${JobName}" |
---|
524 | |
---|
525 | # Add specific treatment for new type of directory structure |
---|
526 | if [ ${new_struct} == yes ] ; then |
---|
527 | |
---|
528 | if [ "X${config_UserChoices_ExpType}" = X ] ; then |
---|
529 | echo "\nERROR in ${j}/config.card" |
---|
530 | echo "ins_job stops here" |
---|
531 | echo "=> The variable ExpType must be added in config.card in section UserChoices" |
---|
532 | echo "=> ExpType gives the directory for the .card configuration files for the wanted experiement. For exemple ExpType=IPSLCM5/historical" |
---|
533 | exit 4 |
---|
534 | else |
---|
535 | [[ ${x_v} = 'verbose' ]] && echo "ExpType= ${config_UserChoices_ExpType}" |
---|
536 | fi |
---|
537 | |
---|
538 | if [ -d ${j}/${JobName} ] ; then |
---|
539 | echo "Directory ${j}/${JobName} exists already. It will not be overwritten." |
---|
540 | echo "Remove the existing directory or change JobName before relaunching ins_job." |
---|
541 | #continue |
---|
542 | exit |
---|
543 | fi |
---|
544 | echo "=> Submit directory ${JobName} will be created with cards from EXPERIMENTS/${config_UserChoices_ExpType}" |
---|
545 | cp -r ${j}/EXPERIMENTS/${config_UserChoices_ExpType} ${j}/${JobName} |
---|
546 | cp -r ${j}/GENERAL/* ${j}/${JobName}/. |
---|
547 | cp -f ${j}/${F_CFG} ${j}/${JobName}/. |
---|
548 | if [ -f ${F_CFG_ENS} ] ; then |
---|
549 | cp -f ${j}/${F_CFG_ENS} ${j}/${JobName}/. |
---|
550 | SUBMIT_DIR_ENS=${j}/${JobName} |
---|
551 | fi |
---|
552 | rm -f ${j}/${F_CFG} |
---|
553 | # rm -f ${j}/${F_CFG_ENS} |
---|
554 | rm -f ${j}/${F_CFG}.bak |
---|
555 | j=${j}/${JobName} |
---|
556 | [[ ${x_v} = 'verbose' ]] && echo new j=$j |
---|
557 | fi |
---|
558 | # end specific treatment for new type directory structure |
---|
559 | |
---|
560 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; } || \ |
---|
561 | { |
---|
562 | [[ ${x_v} = 'verbose' ]] && print - "\nCopying file ${F_RCI}\nin directory ${j}"; |
---|
563 | \cp ${F_RCI} ${j}; |
---|
564 | } |
---|
565 | |
---|
566 | #================================== |
---|
567 | # Read ListOfComponents section: |
---|
568 | #echo |
---|
569 | #IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents" |
---|
570 | |
---|
571 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} ListOfComponents |
---|
572 | for comp in ${config_ListOfComponents[*]} ; do |
---|
573 | IGCM_card_DefineArrayFromOption ${j}'/'${F_CFG} ListOfComponents ${comp} |
---|
574 | done |
---|
575 | #IGCM_debug_Print 3 ${config_ListOfComponents[*]} |
---|
576 | |
---|
577 | #================================== |
---|
578 | # Read Executable section: |
---|
579 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} Executable |
---|
580 | |
---|
581 | # Define the execution context (MPMD, SPMD, MPI/OMP ...) |
---|
582 | IGCM_config_ConfigureExecution ${j}'/'${F_CFG} |
---|
583 | |
---|
584 | # coreNumber : TOTAL NUMBER OF CORES |
---|
585 | # mpiTasks : TOTAL NUMBER OF MPI TASKS |
---|
586 | # openMPthreads : NUMBER OF OpenMP THREADS |
---|
587 | |
---|
588 | # File name for Job_debug |
---|
589 | n_f='Job_debug_'${JobName}; |
---|
590 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
---|
591 | sed -e "/^${W_W} */ s///" \ |
---|
592 | -e "/^${W_P}/d" \ |
---|
593 | -e "s%::modipsl::%${F_MOD}%" \ |
---|
594 | -e "s/::Jobname::/${JobName}/" \ |
---|
595 | -e "s/::default_project::/${ProjectID}/" \ |
---|
596 | -e "s/::WallTime::/${WallTime}/" \ |
---|
597 | ${F_JOB_DEBUG} > ${libIGCM}'/'${n_f} |
---|
598 | chmod u+x ${libIGCM}'/'${n_f} |
---|
599 | |
---|
600 | # update Headers so that ressources description are accurate (MPMD/SPMD/...) |
---|
601 | IGCM_sys_updateHeaders ${libIGCM}'/'${n_f} |
---|
602 | |
---|
603 | # File name for Job |
---|
604 | n_f='Job_'${JobName}; |
---|
605 | [[ ${x_f} = 'false' ]] && [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
---|
606 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
---|
607 | sed -e "/^${W_W} */ s///" \ |
---|
608 | -e "/^${W_P}/d" \ |
---|
609 | -e "s%::modipsl::%${F_MOD}%" \ |
---|
610 | -e "s/::Jobname::/${JobName}/" \ |
---|
611 | -e "s/::default_project::/${ProjectID}/" \ |
---|
612 | -e "s/::WallTime::/${WallTime}/" \ |
---|
613 | ${F_JOB} > ${j}'/'${n_f} |
---|
614 | chmod u+x ${j}'/'${n_f} |
---|
615 | |
---|
616 | # update Headers so that ressources description are accurate (MPMD/SPMD/...) |
---|
617 | IGCM_sys_updateHeaders ${j}'/'${n_f} |
---|
618 | |
---|
619 | done |
---|
620 | |
---|
621 | #- |
---|
622 | # Extract list of AA_* files in libIGCM |
---|
623 | # and create jobs (for all except AA_job) |
---|
624 | #- |
---|
625 | for i in $(find ${libIGCM} -maxdepth 1 -name "AA_*" -print) |
---|
626 | do |
---|
627 | i_f=${i##*/}; |
---|
628 | [[ ${i_f} = 'AA_job' ]] && { continue; } |
---|
629 | [[ ${i_f} = 'AA_job_debug' ]] && { continue; } |
---|
630 | j=${i%/*}; n_f=${i_f#AA_}'.job'; |
---|
631 | [[ ${x_f} = 'false' ]] && [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
---|
632 | [[ ${x_v} = 'verbose' ]] && print - "\nIn directory ${j}\n${i_f} -> ${n_f}" |
---|
633 | sed -e "/^${W_W} */ s///" \ |
---|
634 | -e "s%::modipsl::%${F_MOD}%" \ |
---|
635 | -e "/^${W_P}/d" \ |
---|
636 | -e "s/::default_node::/${ProjectNode}/" \ |
---|
637 | -e "s/::default_core::/${ProjectCore}/" \ |
---|
638 | -e "s/::default_project::/${ProjectID}/" \ |
---|
639 | -e "s/::default_post_project::/${ProjectID}/" \ |
---|
640 | ${i} > ${j}'/'${n_f} |
---|
641 | chmod u+x ${j}'/'${n_f} |
---|
642 | done |
---|
643 | #- |
---|
644 | # set default_project in libIGCM_sys_irene and libIGCM_sys_jeanzay. |
---|
645 | #- |
---|
646 | if [ X"${SYSTEM}" == "Xirene" ] ; then |
---|
647 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_irene.ksh |
---|
648 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
649 | elif [ X"${SYSTEM}" == "Xirene-amd" ] ; then |
---|
650 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_irene-amd.ksh |
---|
651 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
652 | elif [ X"${SYSTEM}" == "Xjeanzay" ] ; then |
---|
653 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_jeanzay.ksh |
---|
654 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
---|
655 | fi |
---|
656 | #- |
---|
657 | # Limited to hindcast/forecast and date restart Ensemble for the time being |
---|
658 | if [ ${x_e} = 'true' ] ; then |
---|
659 | if [ ! -f ${F_CFG_ENS} ] ; then |
---|
660 | echo "" |
---|
661 | echo "################## WARNING ##################" |
---|
662 | echo "No ensemble.card available in current directory" |
---|
663 | echo "" |
---|
664 | exit |
---|
665 | # continue |
---|
666 | fi |
---|
667 | |
---|
668 | #.. Read input data from ensemble.card .. |
---|
669 | SUBMIT_DIR=${SUBMIT_DIR_ENS} |
---|
670 | RUN_DIR="${CCCWORKDIR}/ENSEMBLE_TMP" |
---|
671 | # |
---|
672 | # Copy initial things around and define variables (hindcast/forecast case) |
---|
673 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
674 | IGCM_ensemble_Init |
---|
675 | |
---|
676 | if [[ ${ensemble_Ens_DATE_active} = 'y' ]] ; then |
---|
677 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
678 | IGCM_ensemble_DateInit |
---|
679 | # As it says |
---|
680 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
681 | IGCM_ensemble_DateNonPeriodicStarts |
---|
682 | fi |
---|
683 | |
---|
684 | if [[ ${ensemble_Ens_PERTURB_active} = 'y' ]] ; then |
---|
685 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
686 | IGCM_ensemble_CastInit |
---|
687 | # As it says |
---|
688 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
689 | IGCM_ensemble_CastPeriodicStarts |
---|
690 | # As it says |
---|
691 | #IGCM_sys_Cd ${SUBMIT_DIR} |
---|
692 | #IGCM_ensemble_CastMemberList |
---|
693 | fi |
---|
694 | # Done |
---|
695 | IGCM_sys_Cd ${SUBMIT_DIR} |
---|
696 | # Clean |
---|
697 | IGCM_sys_Rm -rf ${RUN_DIR} |
---|
698 | |
---|
699 | fi |
---|
700 | #- |
---|
701 | [[ ${x_v} = 'verbose' ]] && print - ""; |
---|
702 | #- |
---|
703 | # That's all folks |
---|
704 | #- |
---|
705 | |
---|
706 | if [ ${NbErr} -ne 0 ] ; then |
---|
707 | echo "################ ERROR ################" |
---|
708 | echo "${NbErr} invalid JobName(s) found, check the log" |
---|
709 | fi |
---|
710 | |
---|
711 | |
---|
712 | exit 0; |
---|