[70] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sébastien Denvil |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[70] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Vargas |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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| 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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| 64 | # Host and user names |
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[492] | 65 | |
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| 66 | # $hostname ou hostname |
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[228] | 67 | typeset HOST=${HOST:=$( hostname )} |
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[70] | 68 | # $username ou whoami |
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[228] | 69 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[70] | 70 | # $hostname of the MASTER job |
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[77] | 71 | typeset -r MASTER=vargas |
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[70] | 72 | |
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| 73 | #D- |
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| 74 | #D-#================================================== |
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| 75 | #D-Program used in libIGCM |
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| 76 | #D-#================================================== |
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| 77 | |
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| 78 | # rsync with path |
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| 79 | typeset -r RSYNC=/usr/local/bin/rsync |
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| 80 | # RSYNC_opt args to rsync |
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| 81 | typeset -r RSYNC_opt="-va" |
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[192] | 82 | # ie storage filesystem |
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[70] | 83 | typeset -r RHOST=gaya.idris.fr |
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| 84 | typeset -r REMOTE_RSYNC=/u/rech/ces/rces452/RSYNC/bin/rsync |
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| 85 | |
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| 86 | #==================================================== |
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| 87 | # Host specific DIRECTORIES |
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| 88 | #==================================================== |
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| 89 | |
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| 90 | #==================================================== |
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| 91 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 92 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 93 | |
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| 94 | #==================================================== |
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| 95 | #- SUBMIT_DIR : submission dir |
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| 96 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${LOADL_STEP_INITDIR}} |
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| 97 | |
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| 98 | #==================================================== |
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| 99 | #- ARCHIVE |
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[132] | 100 | typeset -r ARCHIVE=$( echo ${HOME} | sed -e "s/homegpfs/u/" ) |
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[70] | 101 | |
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| 102 | #==================================================== |
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| 103 | #- Mirror libIGCM from vargas to ulam |
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| 104 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 105 | |
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| 106 | #==================================================== |
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| 107 | #- libIGCM_POST |
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[109] | 108 | PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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[132] | 109 | typeset -r HOME_POST=$( echo ${HOME} | sed -e "s/homegpfs/home/" ) |
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[192] | 110 | typeset -r libIGCM_POST=${HOME_POST}/MIRROR/${PATHlibIGCM}/libIGCM |
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[70] | 111 | |
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| 112 | #==================================================== |
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| 113 | #- IN |
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| 114 | typeset -r R_IN=${R_IN:=/u/rech/psl/rpsl035/IGCM} |
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[438] | 115 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/u/rech/psl/rpsl376} |
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[70] | 116 | |
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| 117 | #==================================================== |
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| 118 | #- OUT |
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| 119 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 120 | |
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| 121 | #==================================================== |
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| 122 | #- OUT_POST |
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[132] | 123 | typeset -r R_OUT_POST=$( echo ${HOME} | sed -e "s/homegpfs/workdir/" )/IGCM_OUT |
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[70] | 124 | |
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| 125 | #==================================================== |
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| 126 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 127 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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| 128 | |
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| 129 | #==================================================== |
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[156] | 130 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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[423] | 131 | typeset -r BIG_DIR=${BIG_DIR:=${WORKDIR}/REBUILD} |
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[156] | 132 | |
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| 133 | #==================================================== |
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[70] | 134 | #- HOST_MPIRUN_COMMAND |
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| 135 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time poe"} |
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| 136 | |
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| 137 | #==================================================== |
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| 138 | #- Max number of arguments passed to nco operator or demigration command |
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[493] | 139 | UNIX_MAX_LIMIT=120 |
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[70] | 140 | |
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| 141 | #D-#================================================== |
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| 142 | #D-function IGCM_sys_RshArchive |
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| 143 | #D-* Purpose: Archive rsh command |
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| 144 | #D-* Examples: |
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| 145 | #D- |
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| 146 | function IGCM_sys_RshArchive { |
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| 147 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 148 | rsh gaya exec /bin/ksh <<-EOF |
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| 149 | ${@} |
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| 150 | EOF |
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| 151 | if [ $? -gt 0 ] ; then |
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| 152 | echo "IGCM_sys_RshArchive : erreur." |
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| 153 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 154 | fi |
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| 155 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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| 156 | } |
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| 157 | |
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| 158 | #D-#================================================== |
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| 159 | #D-function IGCM_sys_RshPost |
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| 160 | #D-* Purpose: Post-process rsh command |
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| 161 | #D-* Examples: |
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| 162 | #D- |
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| 163 | function IGCM_sys_RshPost { |
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| 164 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 165 | if ( $DEBUG_sys ) ; then |
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| 166 | echo "IGCM_sys_RshPost :" $@ |
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| 167 | fi |
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[479] | 168 | |
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| 169 | # keep standard input to keep it for postpone if ulam don't answer |
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| 170 | cat >/tmp/tmp_IGCM_sys_RshPost_$$ |
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| 171 | |
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| 172 | ## Add submission for old postponed files only if command is a Qsub |
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| 173 | ## |
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| 174 | ISITQSUB=0 |
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| 175 | grep Qsub /tmp/tmp_IGCM_sys_RshPost_$$ >/dev/null 2>&1 && ISITQSUB=1 |
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| 176 | if ( [ ${ISITQSUB} -gt 0 ] ) ; then |
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| 177 | if [ -d ${SUBMIT_DIR}/POSTPONE ] ; then |
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| 178 | for postponed_file in ${SUBMIT_DIR}/POSTPONE/* ; do |
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| 179 | if [ -f ${postponed_file} ] ; then |
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| 180 | IGCM_debug_Print 2 " submit postponed file : " ${postponed_file} |
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| 181 | rsh ulam exec /bin/ksh <${postponed_file} |
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| 182 | if [ $? -eq 0 ] ; then |
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| 183 | IGCM_sys_Rm ${postponed_file} |
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| 184 | else |
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| 185 | IGCM_debug_Print 2 "keep postponed file for an other submission :" ${postponed_file} |
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| 186 | fi |
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| 187 | fi |
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| 188 | done |
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| 189 | fi |
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[70] | 190 | fi |
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[479] | 191 | |
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| 192 | RETURN=0 |
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| 193 | # rsh ulam command |
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| 194 | rsh ulam exec /bin/ksh </tmp/tmp_IGCM_sys_RshPost_$$ |
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| 195 | RETURN=$? |
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| 196 | |
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| 197 | # keep standard input for postpone if ulam don't answer |
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| 198 | if ( [ ${RETURN} -gt 0 ] ) ; then |
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| 199 | IGCM_debug_Print 2 "Postpone tmp_IGCM_sys_RshPost_$$" |
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| 200 | [ -d ${SUBMIT_DIR}/POSTPONE ] || mkdir ${SUBMIT_DIR}/POSTPONE |
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| 201 | mv /tmp/tmp_IGCM_sys_RshPost_$$ ${SUBMIT_DIR}/POSTPONE |
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| 202 | fi |
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[70] | 203 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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| 204 | } |
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| 205 | |
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| 206 | #D-#================================================== |
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[153] | 207 | #D-function IGCM_sys_SendMail |
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| 208 | #D-* Purpose: Send mail when simulation is over |
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| 209 | #D-* Examples: |
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| 210 | #D- |
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| 211 | function IGCM_sys_SendMail { |
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[409] | 212 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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[153] | 213 | if ( $DEBUG_sys ) ; then |
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| 214 | echo "IGCM_sys_SendMail :" $@ |
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| 215 | fi |
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[437] | 216 | |
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| 217 | if ( ${ExitFlag} ) ; then |
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[453] | 218 | status=failed |
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[437] | 219 | else |
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[453] | 220 | status=completed |
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| 221 | fi |
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| 222 | cat << END_MAIL > job_end.mail |
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[437] | 223 | Dear ${LOGIN}, |
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| 224 | |
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[453] | 225 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[153] | 226 | Job started : ${DateBegin} |
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| 227 | Job ended : ${DateEnd} |
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[434] | 228 | Output files are available in ${R_SAVE} |
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[453] | 229 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[153] | 230 | END_MAIL |
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| 231 | |
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| 232 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[437] | 233 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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[153] | 234 | elif [ -f ~/.forward ] ; then |
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[437] | 235 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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[266] | 236 | else |
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[437] | 237 | mailx -s "${config_UserChoices_JobName} ${status}" ${USER} < job_end.mail |
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[153] | 238 | fi |
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| 239 | |
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| 240 | if [ $? -gt 0 ] ; then |
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| 241 | echo "IGCM_sys_SendMail : erreur." |
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| 242 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 243 | fi |
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| 244 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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| 245 | } |
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| 246 | |
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| 247 | #D-#================================================== |
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[70] | 248 | #D-function IGCM_sys_Mkdir |
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| 249 | #D-* Purpose: Master locale mkdir command |
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| 250 | #D-* Examples: |
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| 251 | #D- |
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| 252 | function IGCM_sys_Mkdir { |
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| 253 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 254 | if ( $DEBUG_sys ) ; then |
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| 255 | echo "IGCM_sys_Mkdir :" $@ |
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| 256 | fi |
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| 257 | if [ ! -d ${1} ]; then |
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| 258 | \mkdir -p $1 |
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| 259 | if [ $? -gt 0 ] ; then |
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| 260 | echo "IGCM_sys_Mkdir : erreur." |
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| 261 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 262 | fi |
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| 263 | fi |
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| 264 | # vérification : |
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| 265 | if [ ! -d ${1} ] ; then |
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| 266 | echo "IGCM_sys_Mkdir : erreur." |
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| 267 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 268 | fi |
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| 269 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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| 270 | } |
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| 271 | |
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| 272 | #D-#================================================== |
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| 273 | #D-function IGCM_sys_MkdirArchive |
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| 274 | #D-* Purpose: Mkdir on Archive |
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| 275 | #D-* Examples: |
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| 276 | #D- |
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| 277 | function IGCM_sys_MkdirArchive { |
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| 278 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 279 | if ( $DEBUG_sys ) ; then |
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| 280 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 281 | fi |
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| 282 | #- creation de repertoire sur le serveur fichier |
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| 283 | rsh gaya -n mkdir -p $1 |
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| 284 | |
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| 285 | if [ $? -gt 0 ] ; then |
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| 286 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 287 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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| 288 | fi |
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| 289 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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| 290 | } |
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| 291 | |
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| 292 | #D-#================================================== |
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| 293 | #D-function IGCM_sys_MkdirWork |
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| 294 | #D-* Purpose: Mkdir on Work |
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| 295 | #D-* Examples: |
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| 296 | #D- |
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| 297 | function IGCM_sys_MkdirWork { |
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| 298 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 299 | if ( $DEBUG_sys ) ; then |
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| 300 | echo "IGCM_sys_MkdirWork :" $@ |
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| 301 | fi |
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| 302 | #- creation de repertoire sur le serveur fichier |
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| 303 | if [ ! -d ${1} ]; then |
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| 304 | \mkdir -p $1 |
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| 305 | if [ $? -gt 0 ] ; then |
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| 306 | echo "IGCM_sys_MkdirWork : erreur." |
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| 307 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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| 308 | fi |
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| 309 | fi |
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| 310 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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| 311 | } |
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| 312 | |
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| 313 | #D-#================================================== |
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| 314 | #D-function IGCM_sys_Cd |
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| 315 | #D-* Purpose: master cd command |
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| 316 | #D-* Examples: |
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| 317 | #D- |
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| 318 | function IGCM_sys_Cd { |
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| 319 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 320 | if ( $DEBUG_sys ) ; then |
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| 321 | echo "IGCM_sys_Cd :" $@ |
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| 322 | fi |
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| 323 | \cd $1 |
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| 324 | if [ $? -gt 0 ] ; then |
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| 325 | echo "IGCM_sys_Cd : erreur." |
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| 326 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 327 | fi |
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| 328 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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| 329 | } |
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| 330 | |
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| 331 | #D-#================================================== |
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| 332 | #D-function IGCM_sys_Chmod |
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| 333 | #D-* Purpose: Chmod |
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| 334 | #D-* Examples: |
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| 335 | #D- |
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| 336 | function IGCM_sys_Chmod { |
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| 337 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 338 | if ( $DEBUG_sys ) ; then |
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| 339 | echo "IGCM_sys_Chmod :" $@ |
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| 340 | fi |
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| 341 | if [ $DRYRUN -le 1 ]; then |
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| 342 | \chmod $@ |
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| 343 | if [ $? -gt 0 ] ; then |
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| 344 | echo "IGCM_sys_Chmod : erreur." |
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| 345 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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| 346 | fi |
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| 347 | else |
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| 348 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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| 349 | fi |
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| 350 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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| 351 | } |
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| 352 | |
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| 353 | #D-#================================================== |
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| 354 | #D-function IGCM_sys_FileSize |
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| 355 | #D-* Purpose: Filesize |
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| 356 | #D-* Examples: |
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| 357 | #D- |
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| 358 | function IGCM_sys_FileSize { |
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| 359 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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| 360 | |
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| 361 | typeset sizeF |
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| 362 | set +A sizeF -- $( ls -la ${1} ) |
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| 363 | if [ $? -gt 0 ] ; then |
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| 364 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 365 | fi |
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| 366 | eval ${2}=${sizeF[4]} |
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| 367 | |
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| 368 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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| 369 | } |
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| 370 | |
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| 371 | #D-#================================================== |
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| 372 | #D-function IGCM_sys_TestDir |
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| 373 | #D-* Purpose: Test Directory that must exists |
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| 374 | #D-* Examples: |
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| 375 | #D- |
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| 376 | function IGCM_sys_TestDir { |
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| 377 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 378 | if ( $DEBUG_sys ) ; then |
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| 379 | echo "IGCM_sys_TestDir :" $@ |
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| 380 | fi |
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| 381 | typeset ExistFlag |
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| 382 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 383 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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| 384 | |
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| 385 | return ${ExistFlag} |
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| 386 | } |
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| 387 | |
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| 388 | #D-#================================================== |
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| 389 | #D-function IGCM_sys_TestDirArchive |
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| 390 | #D-* Purpose: Test Directory that must exists on Archive |
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| 391 | #D-* Examples: |
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| 392 | #D- |
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| 393 | function IGCM_sys_TestDirArchive { |
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| 394 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 395 | if ( $DEBUG_sys ) ; then |
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| 396 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 397 | fi |
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| 398 | typeset ExistFlag |
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| 399 | ExistFlag=$( IGCM_sys_RshArchive "[ -d $1 ] && echo 0 || echo 1" ) |
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| 400 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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| 401 | |
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| 402 | return ${ExistFlag} |
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| 403 | } |
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| 404 | |
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| 405 | #D-#================================================== |
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| 406 | #D-function IGCM_sys_TestFileArchive |
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| 407 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 408 | #D-* Examples: |
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| 409 | #D- |
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| 410 | function IGCM_sys_TestFileArchive { |
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| 411 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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| 412 | typeset ExistFlag |
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| 413 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1 ] && echo 0 || echo 1" ) |
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| 414 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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| 415 | |
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| 416 | return ${ExistFlag} |
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| 417 | } |
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| 418 | |
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| 419 | #D-#================================================== |
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| 420 | #D-function IGCM_sys_CountFileArchive |
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| 421 | #D-* Purpose: Count files on Archive filesystem |
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| 422 | #D-* Examples: |
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| 423 | #D- |
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| 424 | function IGCM_sys_CountFileArchive { |
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| 425 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
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| 426 | IGCM_sys_RshArchive "ls ${@} 2>/dev/null | wc -l" |
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| 427 | if [ $? -gt 0 ] ; then |
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| 428 | echo "IGCM_sys_CountFileArchive : erreur." |
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| 429 | fi |
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| 430 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
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| 431 | } |
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| 432 | |
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| 433 | #D-#================================================== |
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| 434 | #D-function IGCM_sys_Tree |
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| 435 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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| 436 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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| 437 | #D- |
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| 438 | function IGCM_sys_Tree { |
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| 439 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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| 440 | if ( $DEBUG_sys ) ; then |
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| 441 | echo "IGCM_sys_Tree :" $@ |
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| 442 | fi |
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| 443 | |
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| 444 | \mfls -r $@ |
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| 445 | |
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| 446 | IGCM_debug_PopStack "IGCM_sys_Tree" |
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| 447 | } |
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| 448 | |
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| 449 | #D-#================================================== |
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| 450 | #D-function IGCM_sys_Tar |
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| 451 | #D-* Purpose: master un-tar command |
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| 452 | #D-* Examples: |
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| 453 | #D- |
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| 454 | function IGCM_sys_Tar { |
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| 455 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 456 | if ( $DEBUG_sys ) ; then |
---|
| 457 | echo "IGCM_sys_Tar :" $@ |
---|
| 458 | fi |
---|
[192] | 459 | \tar cvf $@ |
---|
[70] | 460 | if [ $? -gt 0 ] ; then |
---|
| 461 | echo "IGCM_sys_Tar : erreur." |
---|
| 462 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 463 | fi |
---|
[192] | 464 | \tar tvf $1 |
---|
| 465 | |
---|
[70] | 466 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
| 467 | } |
---|
| 468 | |
---|
| 469 | #D-#================================================== |
---|
| 470 | #D-function IGCM_sys_UnTar |
---|
| 471 | #D-* Purpose: master un-tar command |
---|
| 472 | #D-* Examples: |
---|
| 473 | #D- |
---|
| 474 | function IGCM_sys_UnTar { |
---|
| 475 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 476 | if ( $DEBUG_sys ) ; then |
---|
| 477 | echo "IGCM_sys_UnTar :" $@ |
---|
| 478 | fi |
---|
| 479 | \tar xvf $1 |
---|
| 480 | if [ $? -gt 0 ] ; then |
---|
| 481 | echo "IGCM_sys_UnTar : erreur." |
---|
| 482 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 483 | fi |
---|
| 484 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
| 485 | } |
---|
| 486 | |
---|
| 487 | #D-#================================================== |
---|
| 488 | #D-function IGCM_sys_Qsub |
---|
| 489 | #D-* Purpose: Qsub new job |
---|
| 490 | #D-* Examples: |
---|
| 491 | #D- |
---|
| 492 | function IGCM_sys_Qsub { |
---|
| 493 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 494 | if ( $DEBUG_sys ) ; then |
---|
| 495 | echo "IGCM_sys_Qsub :" $@ |
---|
| 496 | fi |
---|
[476] | 497 | # We have to change output/error file |
---|
| 498 | [ ${#@} = 1 ] && REP_FOR_JOB=$LOADL_STEP_INITDIR |
---|
| 499 | [ ${#@} = 2 ] && REP_FOR_JOB=$2 |
---|
| 500 | sed -e "s/\# \@ output *= .*/\# \@ output = ${Script_Output}/" -e "s/\# \@ error *= .*/\# \@ error = ${Script_Output}/" <$1 >${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
[92] | 501 | { |
---|
[479] | 502 | [ ${#@} = 1 ] && ( cd $LOADL_STEP_INITDIR ; /usr/local/bin/llsubmit JOB_FOR_IGCM ; ERROR=$? ; cd - ; ) |
---|
| 503 | [ ${#@} = 2 ] && ( cd $2 ; /usr/local/bin/llsubmit JOB_FOR_IGCM ; ERROR=$? ; cd - ; ) |
---|
[92] | 504 | } |
---|
[93] | 505 | if [ ${ERROR} -gt 0 ] ; then |
---|
[476] | 506 | echo "IGCM_sys_Qsub : erreur $@." |
---|
| 507 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
[70] | 508 | fi |
---|
[476] | 509 | IGCM_sys_Rm ${REP_FOR_JOB}/JOB_FOR_IGCM |
---|
[70] | 510 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[476] | 511 | |
---|
[70] | 512 | } |
---|
| 513 | |
---|
| 514 | #D-#================================================== |
---|
| 515 | #D-function IGCM_sys_QsubPost |
---|
| 516 | #D-* Purpose: Qsub new job on scalaire |
---|
| 517 | #D-* Examples: |
---|
| 518 | #D- |
---|
| 519 | function IGCM_sys_QsubPost { |
---|
| 520 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 521 | if ( $DEBUG_sys ) ; then |
---|
| 522 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 523 | fi |
---|
| 524 | cd ${POST_DIR} |
---|
[93] | 525 | /opt/ibmll/LoadL/full/bin/llsubmit ${libIGCM_POST}/$1.job |
---|
[70] | 526 | cd - |
---|
| 527 | if [ $? -gt 0 ] ; then |
---|
| 528 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 529 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 530 | fi |
---|
| 531 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
| 532 | } |
---|
| 533 | |
---|
| 534 | #D-************************* |
---|
| 535 | #D- File transfer functions |
---|
| 536 | #D-************************* |
---|
| 537 | #D- |
---|
| 538 | |
---|
| 539 | #D-#================================================== |
---|
| 540 | #D-function IGCM_sys_Rsync_out |
---|
| 541 | #D-* Purpose: treat return val of rsync |
---|
| 542 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 543 | #D- Error values and explanations can depend on your system version. |
---|
| 544 | function IGCM_sys_Rsync_out { |
---|
| 545 | RET=$1 |
---|
| 546 | if [ ! $RET ] ; then |
---|
| 547 | echo "rsync error !" |
---|
| 548 | fi |
---|
| 549 | |
---|
| 550 | if [ $MYLANG = "fr" ]; then |
---|
| 551 | case $RET in |
---|
| 552 | 0) return ;; |
---|
| 553 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 554 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 555 | return;; |
---|
| 556 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 557 | echo "Incompatibilité de protocole." |
---|
| 558 | return;; |
---|
| 559 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 560 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 561 | echo "répertoires" |
---|
| 562 | return;; |
---|
| 563 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 564 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 565 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 566 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 567 | echo "pas par le serveur a été spécifiée." |
---|
| 568 | return;; |
---|
| 569 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 570 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 571 | return;; |
---|
| 572 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 573 | echo "Erreur d'entrée sortie fichier" |
---|
| 574 | return;; |
---|
| 575 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 576 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 577 | return;; |
---|
| 578 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 579 | echo "Erreur avec les diagnostics du programme" |
---|
| 580 | return;; |
---|
| 581 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 582 | echo "Erreur dans le code IPC" |
---|
| 583 | return;; |
---|
| 584 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 585 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 586 | return;; |
---|
| 587 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 588 | echo "Une erreur retournée par waitpid()" |
---|
| 589 | return;; |
---|
| 590 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 591 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 592 | return;; |
---|
| 593 | 23) echo "" |
---|
| 594 | echo "Erreur fichier inexistant" |
---|
| 595 | return;; |
---|
| 596 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 597 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 598 | return;; |
---|
| 599 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 600 | return;; |
---|
| 601 | esac |
---|
| 602 | elif [ $MYLANG = "en" ] ; then |
---|
| 603 | case $RET in |
---|
| 604 | 0) return;; |
---|
| 605 | 1) echo "rsync error : Syntax or usage error " |
---|
| 606 | return;; |
---|
| 607 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 608 | return;; |
---|
| 609 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 610 | return;; |
---|
| 611 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 612 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 613 | echo "them; or an option was specified that is supported by the client and" |
---|
| 614 | echo "not by the server." |
---|
| 615 | return;; |
---|
| 616 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 617 | return;; |
---|
| 618 | 10) echo "rsync error : Error in socket I/O " |
---|
| 619 | return;; |
---|
| 620 | 11) echo "rsync error : Error in file I/O " |
---|
| 621 | return;; |
---|
| 622 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 623 | return;; |
---|
| 624 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 625 | return;; |
---|
| 626 | 14) echo "rsync error : Error in IPC code " |
---|
| 627 | return;; |
---|
| 628 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 629 | return;; |
---|
| 630 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 631 | return;; |
---|
| 632 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 633 | return;; |
---|
| 634 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 635 | return;; |
---|
| 636 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 637 | return;; |
---|
| 638 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 639 | return;; |
---|
| 640 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 641 | return;; |
---|
| 642 | esac |
---|
| 643 | else |
---|
| 644 | echo "unknown language $MYLANG." |
---|
| 645 | return |
---|
| 646 | fi |
---|
| 647 | } |
---|
| 648 | |
---|
| 649 | |
---|
| 650 | #D-#================================================== |
---|
| 651 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 652 | #D-* Purpose: Mirror libIGCM PATH and lib to ulam |
---|
| 653 | #D-* Examples: |
---|
| 654 | #D- |
---|
| 655 | function IGCM_sys_Mirror_libIGCM { |
---|
| 656 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 657 | if ( $DEBUG_sys ) ; then |
---|
| 658 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 659 | fi |
---|
| 660 | |
---|
| 661 | typeset RET |
---|
| 662 | |
---|
| 663 | IGCM_sys_RshPost <<-EOF |
---|
[193] | 664 | mkdir -p ${HOME_POST}/MIRROR/${PATHlibIGCM} |
---|
[70] | 665 | EOF |
---|
| 666 | rsh ulam -n hostname > /dev/null 2>&1 |
---|
| 667 | RET=$? |
---|
| 668 | if [ $RET -eq 0 ] ; then |
---|
[192] | 669 | echo ${RSYNC} ${RSYNC_opt} -e "rsh " ${libIGCM} ulam:${HOME_POST}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 670 | ${RSYNC} ${RSYNC_opt} -e "rsh " ${libIGCM} ulam:${HOME_POST}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
[70] | 671 | RET=$? |
---|
| 672 | |
---|
| 673 | if [ ${RET} -gt 0 ] ; then |
---|
| 674 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on ulam." |
---|
| 675 | cat out_rsync |
---|
| 676 | fi |
---|
[493] | 677 | IGCM_sys_Rm out_rsync |
---|
[70] | 678 | else |
---|
| 679 | echo "No POST-TREATMENT avaible because ulam is down." |
---|
| 680 | fi |
---|
| 681 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
| 682 | } |
---|
| 683 | |
---|
| 684 | #==================================================== |
---|
| 685 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 686 | if ( $MirrorlibIGCM ) ; then |
---|
| 687 | IGCM_sys_Mirror_libIGCM |
---|
| 688 | fi |
---|
| 689 | |
---|
| 690 | #D-#================================================== |
---|
| 691 | #D-function IGCM_sys_Cp |
---|
| 692 | #D-* Purpose: generic cp |
---|
| 693 | #D-* Examples: |
---|
| 694 | #D- |
---|
| 695 | function IGCM_sys_Cp { |
---|
| 696 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 697 | if ( $DEBUG_sys ) ; then |
---|
| 698 | echo "IGCM_sys_Cp :" $@ |
---|
| 699 | fi |
---|
| 700 | |
---|
| 701 | typeset RET |
---|
| 702 | |
---|
| 703 | echo cp $@ > out_rsync 2>&1 |
---|
| 704 | \cp $@ >> out_rsync 2>&1 |
---|
| 705 | RET=$? |
---|
| 706 | |
---|
| 707 | if [ ${RET} -gt 0 ] ; then |
---|
| 708 | echo "IGCM_sys_Cp : error." |
---|
| 709 | cat out_rsync |
---|
| 710 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 711 | fi |
---|
| 712 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
| 713 | } |
---|
| 714 | |
---|
| 715 | #D-#================================================== |
---|
[92] | 716 | #D-function IGCM_sys_Rm |
---|
| 717 | #D-* Purpose: generic rm |
---|
| 718 | #D-* Examples: |
---|
| 719 | #D- |
---|
| 720 | function IGCM_sys_Rm { |
---|
| 721 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 722 | if ( $DEBUG_sys ) ; then |
---|
[192] | 723 | echo "IGCM_sys_Rm :" $@ |
---|
[92] | 724 | fi |
---|
| 725 | |
---|
| 726 | typeset RET |
---|
| 727 | |
---|
| 728 | echo rm $@ > out_rsync 2>&1 |
---|
| 729 | \rm $@ >> out_rsync 2>&1 |
---|
| 730 | RET=$? |
---|
| 731 | |
---|
| 732 | if [ ${RET} -gt 0 ] ; then |
---|
[192] | 733 | echo "IGCM_sys_Rm : error." |
---|
| 734 | cat out_rsync |
---|
| 735 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
[92] | 736 | fi |
---|
| 737 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
| 738 | } |
---|
| 739 | |
---|
| 740 | #D-#================================================== |
---|
[203] | 741 | #D-function IGCM_sys_RmRunDir |
---|
| 742 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 743 | #D- scheduler will do the job) |
---|
| 744 | #D-* Examples: |
---|
| 745 | #D- |
---|
| 746 | function IGCM_sys_RmRunDir { |
---|
| 747 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 748 | if ( $DEBUG_sys ) ; then |
---|
| 749 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 750 | echo "Dummy call, let the scheduler do that." |
---|
| 751 | fi |
---|
| 752 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
| 753 | } |
---|
| 754 | |
---|
| 755 | #D-#================================================== |
---|
[70] | 756 | #D-function IGCM_sys_Mv |
---|
| 757 | #D-* Purpose: generic move |
---|
| 758 | #D-* Examples: |
---|
| 759 | #D- |
---|
| 760 | function IGCM_sys_Mv { |
---|
| 761 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 762 | if ( $DEBUG_sys ) ; then |
---|
| 763 | echo "IGCM_sys_Mv :" $@ |
---|
| 764 | fi |
---|
| 765 | |
---|
[173] | 766 | if [ $DRYRUN = 0 ]; then |
---|
[70] | 767 | |
---|
[173] | 768 | typeset RET |
---|
| 769 | |
---|
| 770 | echo mv $@ > out_rsync 2>&1 |
---|
| 771 | \mv $@ >> out_rsync 2>&1 |
---|
| 772 | RET=$? |
---|
| 773 | |
---|
| 774 | if [ ${RET} -gt 0 ] ; then |
---|
| 775 | echo "IGCM_sys_Mv : error in mv." |
---|
| 776 | cat out_rsync |
---|
| 777 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
| 778 | fi |
---|
| 779 | else |
---|
| 780 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
[70] | 781 | fi |
---|
| 782 | |
---|
| 783 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
| 784 | } |
---|
| 785 | |
---|
| 786 | #D-#================================================== |
---|
| 787 | #D-function IGCM_sys_Put_Dir |
---|
| 788 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 789 | #D-* Examples: |
---|
| 790 | #D- |
---|
| 791 | function IGCM_sys_Put_Dir { |
---|
| 792 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 793 | if ( $DEBUG_sys ) ; then |
---|
| 794 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 795 | fi |
---|
| 796 | if [ $DRYRUN = 0 ]; then |
---|
| 797 | if [ ! -d ${1} ] ; then |
---|
| 798 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 799 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 800 | return |
---|
| 801 | fi |
---|
| 802 | |
---|
| 803 | typeset RET |
---|
| 804 | |
---|
| 805 | # Only if we use rsync |
---|
| 806 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 807 | # |
---|
| 808 | #USUAL WAY |
---|
| 809 | rcp -r $1 gaya:$2 > out_rsync 2>&1 |
---|
| 810 | RET=$? |
---|
| 811 | |
---|
| 812 | if [ ${RET} -gt 0 ] ; then |
---|
| 813 | echo "IGCM_sys_Put_Dir : error." |
---|
| 814 | cat out_rsync |
---|
| 815 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
| 816 | fi |
---|
| 817 | else |
---|
| 818 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 819 | fi |
---|
| 820 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 821 | } |
---|
| 822 | |
---|
| 823 | #D-#================================================== |
---|
| 824 | #D-function IGCM_sys_Get_Dir |
---|
| 825 | #D-* Purpose: Copy a complete directory from $(ARCHIVE) |
---|
| 826 | #D-* Examples: |
---|
| 827 | #D- |
---|
| 828 | function IGCM_sys_Get_Dir { |
---|
| 829 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 830 | if ( $DEBUG_sys ) ; then |
---|
| 831 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 832 | fi |
---|
| 833 | if [ $DRYRUN = 0 ]; then |
---|
| 834 | if [ ! -d ${1} ] ; then |
---|
| 835 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 836 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 837 | return |
---|
| 838 | fi |
---|
| 839 | |
---|
| 840 | typeset RET |
---|
| 841 | |
---|
| 842 | #USUAL WAY |
---|
| 843 | rcp -rp gaya:$1 $2 > out_rsync 2>&1 |
---|
| 844 | RET=$? |
---|
| 845 | |
---|
| 846 | if [ ${RET} -gt 0 ] ; then |
---|
| 847 | echo "IGCM_sys_Get_Dir : error." |
---|
| 848 | cat out_rsync |
---|
| 849 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
| 850 | fi |
---|
| 851 | else |
---|
| 852 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 853 | fi |
---|
| 854 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 855 | } |
---|
| 856 | |
---|
| 857 | #D-#================================================== |
---|
| 858 | #D-function IGCM_sys_Put_Rest |
---|
| 859 | #D-* Purpose: Put computied restarts on $(ARCHIVE). |
---|
| 860 | #D- File and target directory must exist. |
---|
| 861 | #D-* Examples: |
---|
| 862 | #D- |
---|
| 863 | function IGCM_sys_Put_Rest { |
---|
| 864 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 865 | if ( $DEBUG_sys ) ; then |
---|
| 866 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 867 | fi |
---|
| 868 | if [ $DRYRUN = 0 ]; then |
---|
| 869 | if [ ! -f ${1} ] ; then |
---|
| 870 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 871 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 872 | fi |
---|
| 873 | |
---|
| 874 | typeset RET |
---|
| 875 | # |
---|
[128] | 876 | if [ X${JobType} = XRUN ] ; then |
---|
| 877 | IGCM_sys_Chmod 444 ${1} |
---|
| 878 | fi |
---|
[70] | 879 | # |
---|
| 880 | # Only if we use rsync |
---|
| 881 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 882 | # |
---|
| 883 | #USUAL WAY |
---|
| 884 | mfput $1 $2 > out_rsync 2>&1 |
---|
| 885 | RET=$? |
---|
| 886 | |
---|
| 887 | # #RSYNC WITH NETWORK RSH CALL |
---|
[192] | 888 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 889 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
[70] | 890 | |
---|
| 891 | # #RSYNC WITH NFS USE |
---|
[192] | 892 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 893 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[70] | 894 | |
---|
| 895 | # RET=$? |
---|
| 896 | # IGCM_sys_Rsync_out $RET |
---|
| 897 | |
---|
| 898 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 899 | # (( RET=RET+$? )) |
---|
| 900 | |
---|
| 901 | if [ ${RET} -gt 0 ] ; then |
---|
| 902 | echo "IGCM_sys_Put_Rest : error." |
---|
| 903 | cat out_rsync |
---|
| 904 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 905 | fi |
---|
| 906 | else |
---|
| 907 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 908 | fi |
---|
| 909 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 910 | } |
---|
| 911 | |
---|
| 912 | #D-#================================================== |
---|
| 913 | #D-function IGCM_sys_Put_Out |
---|
| 914 | #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly |
---|
| 915 | #D-* Examples: |
---|
| 916 | #D- |
---|
| 917 | function IGCM_sys_Put_Out { |
---|
| 918 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 919 | if ( $DEBUG_sys ) ; then |
---|
| 920 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 921 | fi |
---|
| 922 | if [ $DRYRUN = 0 ]; then |
---|
| 923 | if [ ! -f ${1} ] ; then |
---|
| 924 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 925 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 926 | return 1 |
---|
| 927 | fi |
---|
| 928 | |
---|
| 929 | typeset RET |
---|
| 930 | # |
---|
[128] | 931 | if [ X${JobType} = XRUN ] ; then |
---|
[228] | 932 | if [ X${3} = X ] ; then |
---|
| 933 | IGCM_sys_Chmod 444 ${1} |
---|
| 934 | fi |
---|
[128] | 935 | fi |
---|
[70] | 936 | # |
---|
| 937 | # Only if we use rsync |
---|
| 938 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 939 | # |
---|
| 940 | #USUAL WAY |
---|
| 941 | mfput $1 $2 > out_rsync 2>&1 |
---|
| 942 | RET=$? |
---|
| 943 | |
---|
| 944 | # #RSYNC WITH NETWORK RSH CALL |
---|
[192] | 945 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
| 946 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
[70] | 947 | |
---|
| 948 | # #RSYNC WITH NFS USE |
---|
[192] | 949 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 950 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[70] | 951 | |
---|
| 952 | # RET=$? |
---|
| 953 | # IGCM_sys_Rsync_out $RET |
---|
| 954 | |
---|
| 955 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 956 | # (( RET=RET+$? )) |
---|
| 957 | |
---|
| 958 | if [ ${RET} -gt 0 ] ; then |
---|
| 959 | echo "IGCM_sys_Put_Out : error." |
---|
| 960 | cat out_rsync |
---|
| 961 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
| 962 | fi |
---|
[495] | 963 | IGCM_sys_Rm out_rsync |
---|
[70] | 964 | else |
---|
| 965 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 966 | fi |
---|
| 967 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 968 | return 0 |
---|
| 969 | } |
---|
| 970 | |
---|
| 971 | #D-#================================================== |
---|
| 972 | #D-function IGCM_sys_Get |
---|
| 973 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 974 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 975 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 976 | function IGCM_sys_Get { |
---|
| 977 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
| 978 | |
---|
| 979 | typeset DEST RET dm_liste ifile target |
---|
| 980 | |
---|
| 981 | if ( $DEBUG_sys ) ; then |
---|
| 982 | echo "IGCM_sys_Get :" $@ |
---|
| 983 | fi |
---|
| 984 | if [ $DRYRUN -le 2 ]; then |
---|
| 985 | if [ X${1} = X'/l' ] ; then |
---|
| 986 | # test if the first file is present in the old computation : |
---|
| 987 | eval set +A dm_liste \${${2}} |
---|
| 988 | else |
---|
| 989 | dm_liste=${1} |
---|
| 990 | fi |
---|
| 991 | eval DEST=\${${#}} |
---|
| 992 | |
---|
| 993 | # test if the (first) file is present in the old computation : |
---|
| 994 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 995 | RET=$? |
---|
| 996 | if [ ${RET} -gt 0 ] ; then |
---|
| 997 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 998 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 999 | return |
---|
| 1000 | fi |
---|
| 1001 | |
---|
| 1002 | # SD : dm_liste is not suited for computing job |
---|
| 1003 | # because we change filename during transfert |
---|
| 1004 | # dm_liste is better suited for post-treatment |
---|
| 1005 | #dm_liste=" " |
---|
| 1006 | #(( ifile=1 )) |
---|
| 1007 | #while [ $ifile -lt $# ] ; do |
---|
| 1008 | # dm_liste=$( eval echo ${dm_liste} " "\${${ifile}} ) |
---|
| 1009 | # (( ifile = ifile + 1 )) |
---|
| 1010 | #done |
---|
| 1011 | #DEST=$( eval echo \${${#}} ) |
---|
| 1012 | |
---|
| 1013 | #USUAL WAY |
---|
| 1014 | mfget ${dm_liste[*]} ${DEST} > out_rsync 2>&1 |
---|
| 1015 | #mfget $1 $2 > out_rsync 2>&1 |
---|
| 1016 | RET=$? |
---|
| 1017 | |
---|
| 1018 | # #RSYNC WITH NETWORK RSH CALL |
---|
[192] | 1019 | # echo ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1020 | # ${RSYNC} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[70] | 1021 | |
---|
| 1022 | # #RSYNC WITH NFS USE |
---|
[192] | 1023 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1024 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[70] | 1025 | |
---|
| 1026 | # RET=$? |
---|
| 1027 | # IGCM_sys_Rsync_out $RET |
---|
| 1028 | |
---|
| 1029 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1030 | # (( RET=RET+$? )) |
---|
| 1031 | |
---|
| 1032 | if [ ${RET} -gt 0 ] ; then |
---|
| 1033 | echo "IGCM_sys_Get : copy error." |
---|
| 1034 | cat out_rsync |
---|
| 1035 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1036 | fi |
---|
| 1037 | else |
---|
| 1038 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1039 | fi |
---|
| 1040 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1041 | } |
---|
| 1042 | |
---|
| 1043 | ############################################################## A FINIR !! |
---|
| 1044 | |
---|
| 1045 | #D-#================================================== |
---|
| 1046 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1047 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1048 | #D-* Examples: |
---|
| 1049 | #D- |
---|
| 1050 | function IGCM_sys_GetDate_FichWork { |
---|
| 1051 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1052 | if ( $DEBUG_sys ) ; then |
---|
| 1053 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1054 | fi |
---|
| 1055 | # donne la date filesys d'un fichier sur la machine work |
---|
| 1056 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1057 | } |
---|
| 1058 | |
---|
| 1059 | #D-#================================================== |
---|
| 1060 | #D-function IGCM_sys_GetDate_FichArchive |
---|
| 1061 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
| 1062 | #D-* Examples: |
---|
| 1063 | #D- |
---|
| 1064 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1065 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1066 | if ( $DEBUG_sys ) ; then |
---|
| 1067 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1068 | fi |
---|
| 1069 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1070 | } |
---|
| 1071 | |
---|
| 1072 | ############################################################## |
---|
| 1073 | # REBUILD OPERATOR |
---|
| 1074 | |
---|
| 1075 | function IGCM_sys_rebuild { |
---|
| 1076 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1077 | if ( $DEBUG_sys ) ; then |
---|
| 1078 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1079 | fi |
---|
| 1080 | /homegpfs/rech/psl/rpsl035/bin/rebuild -f -o $@ |
---|
| 1081 | if [ $? -gt 0 ] ; then |
---|
| 1082 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1083 | IGCM_debug_Exit "rebuild" |
---|
| 1084 | fi |
---|
| 1085 | |
---|
| 1086 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
| 1087 | } |
---|
| 1088 | |
---|
| 1089 | ############################################################ |
---|
| 1090 | # Activate Running Environnment Variables |
---|
| 1091 | |
---|
| 1092 | function IGCM_sys_activ_variables { |
---|
| 1093 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1094 | if ( $DEBUG_sys ) ; then |
---|
| 1095 | echo "IGCM_sys_activ_variables " |
---|
| 1096 | fi |
---|
| 1097 | |
---|
| 1098 | # -------------------------------------------------------------------- |
---|
| 1099 | #D- MPI specifications |
---|
| 1100 | # -------------------------------------------------------------------- |
---|
| 1101 | |
---|
| 1102 | # -------------------------------------------------------------------- |
---|
| 1103 | #D- Other specifications |
---|
| 1104 | # -------------------------------------------------------------------- |
---|
| 1105 | |
---|
| 1106 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
| 1107 | |
---|
| 1108 | } |
---|
| 1109 | |
---|
| 1110 | ############################################################ |
---|
| 1111 | # Desactivate Running Environnment Variables |
---|
| 1112 | |
---|
| 1113 | function IGCM_sys_desactiv_variables { |
---|
| 1114 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1115 | if ( $DEBUG_sys ) ; then |
---|
| 1116 | echo "IGCM_sys_desactiv_variables " |
---|
| 1117 | fi |
---|
| 1118 | # -------------------------------------------------------------------- |
---|
| 1119 | #D- MPI specifications |
---|
| 1120 | # -------------------------------------------------------------------- |
---|
| 1121 | |
---|
| 1122 | # -------------------------------------------------------------------- |
---|
| 1123 | #D- Other specifications |
---|
| 1124 | # -------------------------------------------------------------------- |
---|
| 1125 | |
---|
| 1126 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1127 | |
---|
| 1128 | } |
---|
| 1129 | |
---|
| 1130 | ############################################################ |
---|
[492] | 1131 | # Build MPI/OMP scripts |
---|
| 1132 | function IGCM_sys_build_execution_scripts |
---|
| 1133 | { |
---|
| 1134 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1135 | if ( $DEBUG_sys ) ; then |
---|
| 1136 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1137 | fi |
---|
| 1138 | |
---|
| 1139 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
| 1140 | |
---|
| 1141 | # Verification with PBS parameter |
---|
| 1142 | if [ X${BATCH_NUM_PROC_TOT} != X ] ; then |
---|
| 1143 | |
---|
| 1144 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1145 | EXECUTION=${HOST_MPIRUN_COMMAND} |
---|
| 1146 | else |
---|
| 1147 | if [ ${BATCH_NUM_PROC_TOT} -eq 1 ] ; then |
---|
| 1148 | EXECUTION=${MPIRUN_COMMAND:="time "} |
---|
| 1149 | fi |
---|
| 1150 | fi |
---|
| 1151 | else |
---|
| 1152 | if ( ! ${OK_PARA_MPI} ) ; then |
---|
| 1153 | EXECUTION=${MPIRUN_COMMAND:="time "} |
---|
| 1154 | fi |
---|
| 1155 | fi |
---|
| 1156 | |
---|
| 1157 | if [ ${PROCESSUS_NUMBER} -gt 1 ] ; then |
---|
| 1158 | |
---|
| 1159 | EXECUTION="${EXECUTION} -pgmmodel mpmd -cmdfile ./runfile" |
---|
| 1160 | |
---|
[493] | 1161 | IGCM_debug_Print 1 "sys vargas : execution command is " |
---|
| 1162 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[492] | 1163 | |
---|
| 1164 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1165 | # NEW : 2 Noeuds |
---|
| 1166 | # @ task_geometry={(0)(1,2,3)} |
---|
| 1167 | # Nombre de processus demandes |
---|
[493] | 1168 | echo "Job_${config_UserChoices_JobName} includes task_geometry = \c" |
---|
[492] | 1169 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" |
---|
[493] | 1170 | echo "Job_${config_UserChoices_JobName} includes task_geometry with NbNodes = \c" |
---|
[492] | 1171 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c |
---|
| 1172 | NbNodes_Job=$(( $( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "task_geometry" | sed -e "s/[^(]*([^(]*/(/g" | wc -c ) - 1 )) |
---|
| 1173 | |
---|
| 1174 | if [ ${NbNodes_Job} -eq 0 ] ; then |
---|
| 1175 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no task_geometry defined with OpenMP run." |
---|
| 1176 | exit 1 |
---|
| 1177 | fi |
---|
| 1178 | else |
---|
| 1179 | # OLD : |
---|
| 1180 | # @ total_tasks = 3 |
---|
| 1181 | # @ environment = "BATCH_NUM_PROC_TOT=3" |
---|
| 1182 | # Pas d OpenMP |
---|
| 1183 | # @ resources = ConsumableCpus(1) |
---|
[493] | 1184 | echo "Job_${config_UserChoices_JobName} includes total_tasks = \c" |
---|
[492] | 1185 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" |
---|
| 1186 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep "total_tasks" | sed -e "s/.*total_tasks = //" ) |
---|
| 1187 | NbProc_Job=${NbProc_Job:=0} |
---|
| 1188 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
| 1189 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no total_tasks defined with MPI only run." |
---|
| 1190 | exit 1 |
---|
| 1191 | fi |
---|
[493] | 1192 | if ( $( egrep '^# *@ *resources *= *ConsumableCpus\(1\)' ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} >/dev/null 2>&1 ) ) ; then |
---|
| 1193 | IGCM_debug_Print 2 "ressources = ConsumableCpus(1) line found into Job_${config_UserChoices_JobName}" |
---|
| 1194 | else |
---|
| 1195 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources = line not found. Job should include resources = ConsumableCpus(1) " |
---|
[492] | 1196 | exit 1 |
---|
| 1197 | fi |
---|
| 1198 | fi |
---|
| 1199 | if [ -f runfile ] ; then |
---|
| 1200 | IGCM_sys_Rm -f runfile |
---|
| 1201 | touch runfile |
---|
| 1202 | fi |
---|
| 1203 | fi |
---|
| 1204 | |
---|
| 1205 | # Then loop on the components |
---|
| 1206 | |
---|
[495] | 1207 | ### the coupler ie oasis must be the first one |
---|
[492] | 1208 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1209 | |
---|
| 1210 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1211 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1212 | |
---|
| 1213 | # Only if we really have an executable for the component : |
---|
[495] | 1214 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[492] | 1215 | |
---|
| 1216 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1217 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1218 | |
---|
| 1219 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1220 | |
---|
| 1221 | (( mpi_count = 1 )) |
---|
| 1222 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1223 | if ( ${OK_PARA_OMP} ) ; then |
---|
[493] | 1224 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> runfile |
---|
[492] | 1225 | else |
---|
[493] | 1226 | echo "./${ExeNameOut}" >> runfile |
---|
[492] | 1227 | fi |
---|
| 1228 | (( mpi_count = mpi_count + 1 )) |
---|
| 1229 | done |
---|
| 1230 | else |
---|
| 1231 | if ( ${OK_PARA_OMP} ) ; then |
---|
[493] | 1232 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> runfile |
---|
[492] | 1233 | else |
---|
[493] | 1234 | echo "./${ExeNameOut} " >> runfile |
---|
[492] | 1235 | fi |
---|
| 1236 | fi |
---|
| 1237 | fi |
---|
| 1238 | done |
---|
[493] | 1239 | |
---|
| 1240 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1241 | |
---|
| 1242 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1243 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1244 | |
---|
[495] | 1245 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1246 | if ( [ "X${ExeNameOut}" != X ] && [ "X${comp}" = "XCPL" ] ) ; then |
---|
[493] | 1247 | |
---|
| 1248 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1249 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1250 | |
---|
| 1251 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1252 | |
---|
| 1253 | (( mpi_count = 1 )) |
---|
| 1254 | until [ ${mpi_count} -gt ${comp_proc_mpi_loc} ] ; do |
---|
| 1255 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1256 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> runfile |
---|
| 1257 | else |
---|
| 1258 | echo "./${ExeNameOut}" >> runfile |
---|
| 1259 | fi |
---|
| 1260 | (( mpi_count = mpi_count + 1 )) |
---|
| 1261 | done |
---|
| 1262 | else |
---|
| 1263 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1264 | echo "env OMP_NUM_THREADS=${comp_proc_omp_loc} ./${ExeNameOut} " >> runfile |
---|
| 1265 | else |
---|
| 1266 | echo "./${ExeNameOut} " >> runfile |
---|
| 1267 | fi |
---|
| 1268 | fi |
---|
| 1269 | fi |
---|
| 1270 | done |
---|
[492] | 1271 | IGCM_sys_Chmod u+x runfile |
---|
| 1272 | |
---|
[493] | 1273 | if ( $DEBUG_sys ) ; then |
---|
| 1274 | echo "runfile contains : " |
---|
| 1275 | cat runfile |
---|
| 1276 | fi |
---|
| 1277 | |
---|
| 1278 | |
---|
[492] | 1279 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
| 1280 | } |
---|
| 1281 | |
---|
| 1282 | |
---|