[192] | 1 | #!/bin/ksh |
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[99] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[99] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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[192] | 21 | #D-LibIGCM_sys for Mercure SX9 |
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[99] | 22 | #D-#================================================== |
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| 23 | #D- |
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| 24 | #D- This ksh library if a layer under some usefull |
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| 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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[111] | 34 | # gawk specific location on SX9 |
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| 35 | export PATH=/applications/gawk-3.0.4/bin:${PATH} |
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| 36 | |
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[99] | 37 | #==================================================== |
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| 38 | # set DEBUG_sys to true to output calls of function |
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| 39 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 40 | |
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| 41 | #==================================================== |
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| 42 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 43 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 44 | |
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| 45 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 46 | # ------------------------------------------------------------------------------------- |
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| 47 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 48 | # | | Cp/Exe param files | | Chmod | | |
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| 49 | # | | Qsub | | | | |
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| 50 | # ------------------------------------------------------------------------------------- |
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| 51 | # | 0 | yes | yes | yes | yes | |
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| 52 | # ------------------------------------------------------------------------------------- |
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| 53 | # | 1 | yes | yes | yes | no | |
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| 54 | # ------------------------------------------------------------------------------------- |
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| 55 | # | 2 | yes | yes | no | no | |
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| 56 | # ------------------------------------------------------------------------------------- |
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| 57 | # | 3 | yes | no | no | no | |
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| 58 | # ------------------------------------------------------------------------------------- |
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| 59 | |
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| 60 | #===================================================== |
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| 61 | # Global Variables : |
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| 62 | #===================================================== |
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| 63 | # Language : "fr" or "en" |
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| 64 | typeset -r MYLANG="fr" |
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| 65 | |
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| 66 | #===================================================== |
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[192] | 67 | # Host and user names |
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| 68 | # $hostname ou hostname |
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[228] | 69 | typeset HOST=${HOST:=$( hostname )} |
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[99] | 70 | # $username ou whoami |
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[228] | 71 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[99] | 72 | # $hostname of the MASTER job |
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| 73 | typeset -r MASTER=mercure |
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| 74 | |
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| 75 | #D- |
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| 76 | #D-#================================================== |
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| 77 | #D-Program used in libIGCM |
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| 78 | #D-#================================================== |
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| 79 | |
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| 80 | # rsync with path |
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| 81 | typeset -r RSYNC=/home/cont003/p86denv/SX_RSYNC/bin/rsync |
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| 82 | # RSYNC_opt args to rsync |
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[192] | 83 | typeset -r RSYNC_opt="-va" |
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[99] | 84 | # ie storage filesystem |
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[571] | 85 | typeset -r STOREHOST=${MASTER} |
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[99] | 86 | |
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| 87 | #==================================================== |
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| 88 | # Host specific DIRECTORIES |
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| 89 | #==================================================== |
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| 90 | |
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[257] | 91 | # ============ CESIUM START ============ # |
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| 92 | |
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[99] | 93 | #==================================================== |
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[192] | 94 | #- Mirror libIGCM from mercure to cesium if needed |
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[592] | 95 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 96 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 97 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 98 | #else |
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| 99 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 100 | #fi |
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[192] | 101 | |
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| 102 | #==================================================== |
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[99] | 103 | #- libIGCM_POST |
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[592] | 104 | #if ( ${MirrorlibIGCM} ) ; then |
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| 105 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 106 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 107 | #else |
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| 108 | # typeset -r libIGCM_POST=${libIGCM} |
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| 109 | #fi |
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[99] | 110 | |
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[257] | 111 | # ============ CESIUM END ============ # |
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| 112 | |
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[99] | 113 | #==================================================== |
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[316] | 114 | #- MirrorlibIGCM uncomment for frontend |
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[592] | 115 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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[257] | 116 | |
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| 117 | #==================================================== |
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[316] | 118 | #- libIGCM_POST uncomment for frontend |
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[592] | 119 | typeset -r libIGCM_POST=${libIGCM} |
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[257] | 120 | |
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| 121 | #==================================================== |
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[592] | 122 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 123 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 124 | |
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| 125 | #==================================================== |
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| 126 | #- SUBMIT_DIR : submission dir |
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| 127 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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| 128 | |
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| 129 | #==================================================== |
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| 130 | #- ARCHIVE (dedicated to large files) |
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| 131 | typeset -r ARCHIVE=${CCCSTOREDIR} |
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| 132 | |
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| 133 | #- ARCHIVE (dedicated to small/medium files) |
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| 134 | typeset -r STORAGE=${CCCWORKDIR} |
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| 135 | |
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| 136 | #==================================================== |
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[99] | 137 | #- IN |
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[571] | 138 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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[438] | 139 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/dmnfs/cont003/p24data} |
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[99] | 140 | |
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| 141 | #==================================================== |
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[571] | 142 | #- R_OUT |
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[99] | 143 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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| 144 | |
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| 145 | #==================================================== |
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[592] | 146 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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| 147 | typeset -r R_FIG=${STORAGE}/IGCM_OUT |
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| 148 | |
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| 149 | #==================================================== |
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[571] | 150 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 151 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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| 152 | |
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| 153 | #==================================================== |
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| 154 | #- BIG_DIR : BIG_DIR to store files waiting for rebuild |
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| 155 | typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD} |
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| 156 | |
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| 157 | #==================================================== |
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[99] | 158 | #- OUT_POST |
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| 159 | typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT |
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| 160 | |
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| 161 | #==================================================== |
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| 162 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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| 163 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${LOCALTMPDIR}} |
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| 164 | |
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| 165 | #==================================================== |
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| 166 | #- HOST_MPIRUN_COMMAND |
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| 167 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} |
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| 168 | |
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| 169 | #==================================================== |
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| 170 | #- Max number of arguments passed to nco operator or demigration command |
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| 171 | UNIX_MAX_LIMIT=360 |
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| 172 | |
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[558] | 173 | #==================================================== |
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[595] | 174 | #- set PackDefault true on NEC SX9 |
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| 175 | PackDefault=true |
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| 176 | |
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| 177 | |
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| 178 | #==================================================== |
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[558] | 179 | #- Default number of MPI task for IPSL coupled model |
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| 180 | #- required for backward compatibility |
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| 181 | #- |
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| 182 | DEFAULT_NUM_PROC_OCE=1 |
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| 183 | DEFAULT_NUM_PROC_CPL=1 |
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[594] | 184 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) |
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| 185 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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[558] | 186 | |
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[99] | 187 | #D-#================================================== |
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[571] | 188 | #D-function IGCM_sys_RshMaster |
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| 189 | #D-* Purpose: Connection to frontend machine. |
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| 190 | #D-* Examples: |
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| 191 | #D- |
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| 192 | function IGCM_sys_RshMaster { |
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| 193 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 194 | ssh -t ${MASTER} /bin/ksh <<-EOF |
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| 195 | export libIGCM=${libIGCM} |
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| 196 | export DEBUG_debug=${DEBUG_debug} |
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| 197 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 198 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 199 | ${@} |
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| 200 | EOF |
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| 201 | if [ $? -gt 0 ] ; then |
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| 202 | echo "IGCM_sys_RshMaster : erreur." |
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| 203 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 204 | fi |
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| 205 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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| 206 | } |
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| 207 | |
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| 208 | #D-#================================================== |
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[99] | 209 | #D-function IGCM_sys_RshArchive |
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| 210 | #D-* Purpose: Archive rsh command |
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| 211 | #D-* Examples: |
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| 212 | #D- |
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| 213 | function IGCM_sys_RshArchive { |
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[571] | 214 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 215 | /bin/ksh <<-EOF |
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| 216 | ${@} |
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[99] | 217 | EOF |
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[571] | 218 | if [ $? -gt 0 ] ; then |
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| 219 | echo "IGCM_sys_RshArchive : erreur." |
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| 220 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 221 | fi |
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| 222 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[99] | 223 | } |
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| 224 | |
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| 225 | #D-#================================================== |
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| 226 | #D-function IGCM_sys_RshPost |
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| 227 | #D-* Purpose: Post-process rsh command |
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| 228 | #D-* Examples: |
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| 229 | #D- |
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| 230 | function IGCM_sys_RshPost { |
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[571] | 231 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 232 | if ( $DEBUG_sys ) ; then |
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| 233 | echo "IGCM_sys_RshPost :" $@ |
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| 234 | fi |
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[167] | 235 | |
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[571] | 236 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 237 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 238 | # keep standard input (stdin) for the loop onto temporary file |
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| 239 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 240 | |
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| 241 | # ============ FRONTEND START ============ # |
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| 242 | |
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[592] | 243 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 244 | if [ $? -gt 0 ] ; then |
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| 245 | echo "IGCM_sys_RshPost : erreur." |
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| 246 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 247 | fi |
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| 248 | \rm tmp_IGCM_sys_RshPost_$$ |
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[571] | 249 | |
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| 250 | # ============ FRONTEND END ============ # |
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| 251 | |
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[257] | 252 | # ============ CESIUM START ============ # |
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[592] | 253 | # typeset NB_ESSAI DELAI status i |
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| 254 | # # number of tentative |
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| 255 | # NB_ESSAI=10 |
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| 256 | # # time delay between tentative |
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| 257 | # DELAI=10 |
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| 258 | # (( i = 0 )) |
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| 259 | # while [ $i -lt $NB_ESSAI ] ; do |
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| 260 | # ssh -t mercure01 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 261 | # status=$? |
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| 262 | # if [ ${status} -gt 0 ]; then |
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| 263 | # IGCM_debug_Print 2 "IGCM_sys_RshPost : ssh failed ${i}/${NB_ESSAI}" |
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| 264 | # IGCM_debug_Print 2 "IGCM_sys_RshPost : sleep ${DELAI} seconds and try again." |
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| 265 | # sleep $DELAI |
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| 266 | # else |
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| 267 | # break |
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| 268 | # fi |
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| 269 | # (( i = i + 1 )) |
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| 270 | # done |
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| 271 | # # delete temporary file |
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| 272 | # /bin/rm tmp_IGCM_sys_RshPost_$$ |
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[257] | 273 | # ============ CESIUM END ============ # |
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[170] | 274 | |
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[571] | 275 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[99] | 276 | } |
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| 277 | |
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| 278 | #D-#================================================== |
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[153] | 279 | #D-function IGCM_sys_SendMail |
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| 280 | #D-* Purpose: Send mail when simulation is over |
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| 281 | #D-* Examples: |
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| 282 | #D- |
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| 283 | function IGCM_sys_SendMail { |
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[571] | 284 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 285 | if ( $DEBUG_sys ) ; then |
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| 286 | echo "IGCM_sys_SendMail :" $@ |
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| 287 | fi |
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[153] | 288 | |
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[571] | 289 | if ( ${ExitFlag} ) ; then |
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| 290 | status=failed |
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| 291 | else |
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| 292 | status=completed |
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| 293 | fi |
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| 294 | cat << END_MAIL > job_end.mail |
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| 295 | Dear ${LOGIN}, |
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[437] | 296 | |
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[452] | 297 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[153] | 298 | Job started : ${DateBegin} |
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| 299 | Job ended : ${DateEnd} |
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[434] | 300 | Output files are available in ${R_SAVE} |
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[608] | 301 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 302 | Pre-packed files are temporarily available in ${R_BUFR} |
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[452] | 303 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[153] | 304 | END_MAIL |
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| 305 | |
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[571] | 306 | if [ X"${config_UserChoices_MailName}" != X ] ; then |
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| 307 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 308 | elif [ -f ~/.forward ] ; then |
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| 309 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 310 | else |
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| 311 | mailx -s "${config_UserChoices_JobName} ${status}" ${LOGIN} < job_end.mail |
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| 312 | fi |
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[153] | 313 | |
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[571] | 314 | if [ $? -gt 0 ] ; then |
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| 315 | echo "IGCM_sys_SendMail : erreur." |
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| 316 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 317 | fi |
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| 318 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[153] | 319 | } |
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| 320 | |
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| 321 | #D-#================================================== |
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[99] | 322 | #D-function IGCM_sys_Mkdir |
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| 323 | #D-* Purpose: Master locale mkdir command |
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| 324 | #D-* Examples: |
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| 325 | #D- |
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| 326 | function IGCM_sys_Mkdir { |
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[571] | 327 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 328 | if ( $DEBUG_sys ) ; then |
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| 329 | echo "IGCM_sys_Mkdir :" $@ |
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| 330 | fi |
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| 331 | if [ ! -d ${1} ]; then |
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| 332 | \mkdir -p $1 |
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| 333 | if [ $? -gt 0 ] ; then |
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| 334 | echo "IGCM_sys_Mkdir : erreur." |
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| 335 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[99] | 336 | fi |
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[571] | 337 | fi |
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| 338 | # vérification : |
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| 339 | if [ ! -d ${1} ] ; then |
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| 340 | echo "IGCM_sys_Mkdir : erreur." |
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| 341 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 342 | fi |
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| 343 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[99] | 344 | } |
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| 345 | |
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| 346 | #D-#================================================== |
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| 347 | #D-function IGCM_sys_MkdirArchive |
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| 348 | #D-* Purpose: Mkdir on Archive |
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| 349 | #D-* Examples: |
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| 350 | #D- |
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| 351 | function IGCM_sys_MkdirArchive { |
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[571] | 352 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 353 | if ( $DEBUG_sys ) ; then |
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| 354 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 355 | fi |
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| 356 | #- creation de repertoire sur le serveur fichier |
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| 357 | if [ ! -d ${1} ]; then |
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| 358 | \mkdir -p $1 |
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| 359 | if [ $? -gt 0 ] ; then |
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| 360 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 361 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[99] | 362 | fi |
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[571] | 363 | fi |
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| 364 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[99] | 365 | } |
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| 366 | |
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| 367 | #D-#================================================== |
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| 368 | #D-function IGCM_sys_MkdirWork |
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| 369 | #D-* Purpose: Mkdir on Work |
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| 370 | #D-* Examples: |
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| 371 | #D- |
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| 372 | function IGCM_sys_MkdirWork { |
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[571] | 373 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 374 | if ( $DEBUG_sys ) ; then |
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| 375 | echo "IGCM_sys_MkdirWork :" $@ |
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| 376 | fi |
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| 377 | #- creation de repertoire sur le serveur fichier |
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| 378 | if [ ! -d ${1} ]; then |
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| 379 | \mkdir -p $1 |
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| 380 | if [ $? -gt 0 ] ; then |
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| 381 | echo "IGCM_sys_MkdirWork : erreur." |
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| 382 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[99] | 383 | fi |
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[571] | 384 | fi |
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| 385 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[99] | 386 | } |
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| 387 | |
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| 388 | #D-#================================================== |
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| 389 | #D-function IGCM_sys_Cd |
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| 390 | #D-* Purpose: master cd command |
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| 391 | #D-* Examples: |
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| 392 | #D- |
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| 393 | function IGCM_sys_Cd { |
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[571] | 394 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 395 | if ( $DEBUG_sys ) ; then |
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| 396 | echo "IGCM_sys_Cd :" $@ |
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| 397 | fi |
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| 398 | \cd $1 |
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| 399 | if [ $? -gt 0 ] ; then |
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| 400 | echo "IGCM_sys_Cd : erreur." |
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| 401 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 402 | fi |
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| 403 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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[99] | 404 | } |
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| 405 | |
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| 406 | #D-#================================================== |
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| 407 | #D-function IGCM_sys_Chmod |
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| 408 | #D-* Purpose: Chmod |
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| 409 | #D-* Examples: |
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| 410 | #D- |
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| 411 | function IGCM_sys_Chmod { |
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[571] | 412 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 413 | if ( $DEBUG_sys ) ; then |
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| 414 | echo "IGCM_sys_Chmod :" $@ |
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| 415 | fi |
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| 416 | if [ $DRYRUN -le 1 ]; then |
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| 417 | \chmod $@ |
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| 418 | if [ $? -gt 0 ] ; then |
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| 419 | echo "IGCM_sys_Chmod : erreur." |
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| 420 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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[99] | 421 | fi |
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[571] | 422 | else |
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| 423 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
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| 424 | fi |
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| 425 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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[99] | 426 | } |
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| 427 | |
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| 428 | #D-#================================================== |
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| 429 | #D-function IGCM_sys_FileSize |
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| 430 | #D-* Purpose: Filesize |
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| 431 | #D-* Examples: |
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| 432 | #D- |
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| 433 | function IGCM_sys_FileSize { |
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[571] | 434 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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[99] | 435 | |
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[571] | 436 | typeset sizeF |
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| 437 | set +A sizeF -- $( ls -la ${1} ) |
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| 438 | if [ $? -gt 0 ] ; then |
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| 439 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 440 | fi |
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| 441 | eval ${2}=${sizeF[4]} |
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[99] | 442 | |
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[571] | 443 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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[99] | 444 | } |
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| 445 | |
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| 446 | #D-#================================================== |
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| 447 | #D-function IGCM_sys_TestDir |
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| 448 | #D-* Purpose: Test Directory that must exists |
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| 449 | #D-* Examples: |
---|
| 450 | #D- |
---|
| 451 | function IGCM_sys_TestDir { |
---|
[571] | 452 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 453 | if ( $DEBUG_sys ) ; then |
---|
| 454 | echo "IGCM_sys_TestDir :" $@ |
---|
| 455 | fi |
---|
| 456 | typeset ExistFlag |
---|
| 457 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 458 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[99] | 459 | |
---|
[571] | 460 | return ${ExistFlag} |
---|
[99] | 461 | } |
---|
| 462 | |
---|
| 463 | #D-#================================================== |
---|
| 464 | #D-function IGCM_sys_TestDirArchive |
---|
| 465 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 466 | #D-* Examples: |
---|
| 467 | #D- |
---|
| 468 | function IGCM_sys_TestDirArchive { |
---|
[571] | 469 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 470 | if ( $DEBUG_sys ) ; then |
---|
| 471 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 472 | fi |
---|
| 473 | typeset ExistFlag |
---|
| 474 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 475 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[99] | 476 | |
---|
[571] | 477 | return ${ExistFlag} |
---|
[99] | 478 | } |
---|
| 479 | |
---|
| 480 | #D-#================================================== |
---|
[571] | 481 | #D-function IGCM_sys_IsFileArchived |
---|
| 482 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 483 | #D-* Examples: |
---|
| 484 | #D- |
---|
| 485 | function IGCM_sys_IsFileArchived { |
---|
| 486 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 487 | if ( $DEBUG_sys ) ; then |
---|
| 488 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 489 | fi |
---|
| 490 | typeset IsArchivedFlag |
---|
| 491 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/dmnfs ) != X ] && echo 0 || echo 1 ) |
---|
| 492 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 493 | |
---|
| 494 | return ${IsArchivedFlag} |
---|
| 495 | } |
---|
| 496 | |
---|
| 497 | #D-#================================================== |
---|
[99] | 498 | #D-function IGCM_sys_TestFileArchive |
---|
| 499 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 500 | #D-* Examples: |
---|
| 501 | #D- |
---|
| 502 | function IGCM_sys_TestFileArchive { |
---|
[571] | 503 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 504 | if ( $DEBUG_sys ) ; then |
---|
| 505 | echo "IGCM_sys_TestFileArchive :" $@ |
---|
| 506 | fi |
---|
| 507 | typeset ExistFlag |
---|
| 508 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 509 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[99] | 510 | |
---|
[571] | 511 | return ${ExistFlag} |
---|
[99] | 512 | } |
---|
| 513 | |
---|
| 514 | #D-#================================================== |
---|
[571] | 515 | #D-function IGCM_sys_TestFileBuffer |
---|
| 516 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 517 | #D-* Examples: |
---|
| 518 | #D- |
---|
| 519 | function IGCM_sys_TestFileBuffer { |
---|
| 520 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 521 | typeset ExistFlag |
---|
| 522 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 523 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 524 | |
---|
| 525 | return ${ExistFlag} |
---|
| 526 | } |
---|
| 527 | |
---|
| 528 | #D-#================================================== |
---|
[99] | 529 | #D-function IGCM_sys_CountFileArchive |
---|
| 530 | #D-* Purpose: Count files on Archive filesystem |
---|
| 531 | #D-* Examples: |
---|
| 532 | #D- |
---|
| 533 | function IGCM_sys_CountFileArchive { |
---|
[571] | 534 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 535 | ls ${@} 2>/dev/null | wc -l |
---|
| 536 | if [ $? -gt 0 ] ; then |
---|
| 537 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 538 | fi |
---|
| 539 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[99] | 540 | } |
---|
| 541 | |
---|
| 542 | #D-#================================================== |
---|
[571] | 543 | #D-function IGCM_sys_CountFileBuffer |
---|
| 544 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 545 | #D-* Examples: |
---|
| 546 | #D- |
---|
| 547 | function IGCM_sys_CountFileBuffer { |
---|
| 548 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 549 | ls ${@} 2>/dev/null | wc -l |
---|
| 550 | if [ $? -gt 0 ] ; then |
---|
| 551 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 552 | fi |
---|
| 553 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 554 | } |
---|
| 555 | |
---|
| 556 | #D-#================================================== |
---|
[99] | 557 | #D-function IGCM_sys_Tree |
---|
| 558 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 559 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 560 | #D- |
---|
| 561 | function IGCM_sys_Tree { |
---|
[571] | 562 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 563 | if ( $DEBUG_sys ) ; then |
---|
| 564 | echo "IGCM_sys_Tree :" $@ |
---|
| 565 | fi |
---|
[99] | 566 | |
---|
[571] | 567 | \ls -lR ${@} |
---|
[99] | 568 | |
---|
[571] | 569 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[99] | 570 | } |
---|
| 571 | |
---|
| 572 | #D-#================================================== |
---|
| 573 | #D-function IGCM_sys_Tar |
---|
[571] | 574 | #D-* Purpose: master tar command |
---|
[99] | 575 | #D-* Examples: |
---|
| 576 | #D- |
---|
| 577 | function IGCM_sys_Tar { |
---|
[571] | 578 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 579 | if ( $DEBUG_sys ) ; then |
---|
| 580 | echo "IGCM_sys_Tar :" $@ |
---|
| 581 | fi |
---|
| 582 | \tar cf $@ |
---|
| 583 | if [ $? -gt 0 ] ; then |
---|
| 584 | echo "IGCM_sys_Tar : erreur." |
---|
| 585 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 586 | fi |
---|
| 587 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[99] | 588 | } |
---|
| 589 | |
---|
| 590 | #D-#================================================== |
---|
| 591 | #D-function IGCM_sys_UnTar |
---|
| 592 | #D-* Purpose: master un-tar command |
---|
| 593 | #D-* Examples: |
---|
| 594 | #D- |
---|
| 595 | function IGCM_sys_UnTar { |
---|
[571] | 596 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 597 | if ( $DEBUG_sys ) ; then |
---|
| 598 | echo "IGCM_sys_UnTar :" $@ |
---|
| 599 | fi |
---|
| 600 | \tar xvf $1 |
---|
| 601 | if [ $? -gt 0 ] ; then |
---|
| 602 | echo "IGCM_sys_UnTar : erreur." |
---|
| 603 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 604 | fi |
---|
| 605 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[99] | 606 | } |
---|
| 607 | |
---|
| 608 | #D-#================================================== |
---|
| 609 | #D-function IGCM_sys_Qsub |
---|
| 610 | #D-* Purpose: Qsub new job |
---|
| 611 | #D-* Examples: |
---|
| 612 | #D- |
---|
| 613 | function IGCM_sys_Qsub { |
---|
[571] | 614 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 615 | if ( $DEBUG_sys ) ; then |
---|
| 616 | echo "IGCM_sys_Qsub :" $@ |
---|
| 617 | fi |
---|
| 618 | /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 619 | if [ $? -gt 0 ] ; then |
---|
| 620 | echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." |
---|
| 621 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 622 | fi |
---|
| 623 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[99] | 624 | } |
---|
| 625 | |
---|
| 626 | #D-#================================================== |
---|
| 627 | #D-function IGCM_sys_QsubPost |
---|
| 628 | #D-* Purpose: Qsub new job on scalaire |
---|
| 629 | #D-* Examples: |
---|
| 630 | #D- |
---|
| 631 | function IGCM_sys_QsubPost { |
---|
[571] | 632 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 633 | if ( $DEBUG_sys ) ; then |
---|
| 634 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 635 | fi |
---|
| 636 | |
---|
| 637 | # ============ FRONTEND START ============ # |
---|
| 638 | |
---|
[592] | 639 | /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM}/$1.job -v ${listVarEnv} |
---|
[571] | 640 | |
---|
| 641 | # ============ FRONTEND END ============ # |
---|
| 642 | |
---|
| 643 | # ============ CESIUM START ============ # |
---|
[592] | 644 | # typeset NB_ESSAI DELAI status i |
---|
| 645 | # # number of tentative |
---|
| 646 | # NB_ESSAI=10 |
---|
| 647 | # # time delay between tentative |
---|
| 648 | # DELAI=10 |
---|
| 649 | # (( i = 0 )) |
---|
| 650 | # while [ $i -lt $NB_ESSAI ] ; do |
---|
| 651 | # /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job |
---|
| 652 | # status=$? |
---|
| 653 | # if [ ${status} -gt 0 ]; then |
---|
| 654 | # sleep $DELAI |
---|
| 655 | # else |
---|
| 656 | # break |
---|
| 657 | # fi |
---|
| 658 | # (( i = i + 1 )) |
---|
| 659 | # done |
---|
[571] | 660 | # ============ CESIUM END ============ # |
---|
| 661 | |
---|
| 662 | if [ $? -gt 0 ] ; then |
---|
| 663 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 664 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 665 | fi |
---|
| 666 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[99] | 667 | } |
---|
| 668 | |
---|
| 669 | #D-************************* |
---|
| 670 | #D- File transfer functions |
---|
| 671 | #D-************************* |
---|
| 672 | #D- |
---|
| 673 | |
---|
| 674 | #D-#================================================== |
---|
| 675 | #D-function IGCM_sys_Rsync_out |
---|
| 676 | #D-* Purpose: treat return val of rsync |
---|
| 677 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 678 | #D- Error values and explanations can depend on your system version. |
---|
| 679 | function IGCM_sys_Rsync_out { |
---|
[571] | 680 | RET=$1 |
---|
| 681 | if [ ! $RET ] ; then |
---|
| 682 | echo "rsync error !" |
---|
| 683 | fi |
---|
[99] | 684 | |
---|
[571] | 685 | if [ $MYLANG = "fr" ]; then |
---|
| 686 | case $RET in |
---|
| 687 | 0) return ;; |
---|
| 688 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 689 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 690 | return;; |
---|
| 691 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 692 | echo "Incompatibilité de protocole." |
---|
| 693 | return;; |
---|
| 694 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 695 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 696 | echo "répertoires" |
---|
| 697 | return;; |
---|
| 698 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 699 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 700 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 701 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 702 | echo "pas par le serveur a été spécifiée." |
---|
| 703 | return;; |
---|
| 704 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 705 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 706 | return;; |
---|
| 707 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 708 | echo "Erreur d'entrée sortie fichier" |
---|
| 709 | return;; |
---|
| 710 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 711 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 712 | return;; |
---|
| 713 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 714 | echo "Erreur avec les diagnostics du programme" |
---|
| 715 | return;; |
---|
| 716 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 717 | echo "Erreur dans le code IPC" |
---|
| 718 | return;; |
---|
| 719 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 720 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 721 | return;; |
---|
| 722 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 723 | echo "Une erreur retournée par waitpid()" |
---|
| 724 | return;; |
---|
| 725 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 726 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 727 | return;; |
---|
| 728 | 23) echo "" |
---|
| 729 | echo "Erreur fichier inexistant" |
---|
| 730 | return;; |
---|
| 731 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 732 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 733 | return;; |
---|
| 734 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
| 735 | return;; |
---|
| 736 | esac |
---|
| 737 | elif [ $MYLANG = "en" ] ; then |
---|
| 738 | case $RET in |
---|
| 739 | 0) return;; |
---|
| 740 | 1) echo "rsync error : Syntax or usage error " |
---|
| 741 | return;; |
---|
| 742 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 743 | return;; |
---|
| 744 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 745 | return;; |
---|
| 746 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 747 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 748 | echo "them; or an option was specified that is supported by the client and" |
---|
| 749 | echo "not by the server." |
---|
| 750 | return;; |
---|
| 751 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 752 | return;; |
---|
| 753 | 10) echo "rsync error : Error in socket I/O " |
---|
| 754 | return;; |
---|
| 755 | 11) echo "rsync error : Error in file I/O " |
---|
| 756 | return;; |
---|
| 757 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 758 | return;; |
---|
| 759 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 760 | return;; |
---|
| 761 | 14) echo "rsync error : Error in IPC code " |
---|
| 762 | return;; |
---|
| 763 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 764 | return;; |
---|
| 765 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 766 | return;; |
---|
| 767 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 768 | return;; |
---|
| 769 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 770 | return;; |
---|
| 771 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 772 | return;; |
---|
| 773 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 774 | return;; |
---|
| 775 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
| 776 | return;; |
---|
| 777 | esac |
---|
| 778 | else |
---|
| 779 | echo "unknown language $MYLANG." |
---|
| 780 | return |
---|
| 781 | fi |
---|
[99] | 782 | } |
---|
[192] | 783 | |
---|
[99] | 784 | #D-#================================================== |
---|
[192] | 785 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 786 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 787 | #D-* Examples: |
---|
| 788 | #D- |
---|
| 789 | function IGCM_sys_Mirror_libIGCM { |
---|
[571] | 790 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 791 | if ( $DEBUG_sys ) ; then |
---|
| 792 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 793 | fi |
---|
[192] | 794 | |
---|
[571] | 795 | typeset RET DEST |
---|
[192] | 796 | |
---|
[571] | 797 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[192] | 798 | |
---|
[571] | 799 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 800 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
| 801 | RET=$? |
---|
[192] | 802 | |
---|
[571] | 803 | if [ ${RET} -gt 0 ] ; then |
---|
| 804 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 805 | cat out_rsync |
---|
| 806 | fi |
---|
| 807 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[192] | 808 | } |
---|
| 809 | |
---|
| 810 | #==================================================== |
---|
| 811 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 812 | if ( $MirrorlibIGCM ) ; then |
---|
[571] | 813 | IGCM_sys_Mirror_libIGCM |
---|
[192] | 814 | fi |
---|
| 815 | |
---|
| 816 | #D-#================================================== |
---|
[99] | 817 | #D-function IGCM_sys_Cp |
---|
| 818 | #D-* Purpose: generic cp |
---|
| 819 | #D-* Examples: |
---|
| 820 | #D- |
---|
| 821 | function IGCM_sys_Cp { |
---|
[571] | 822 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 823 | if ( $DEBUG_sys ) ; then |
---|
| 824 | echo "IGCM_sys_Cp :" $@ |
---|
| 825 | fi |
---|
[99] | 826 | |
---|
[571] | 827 | typeset RET |
---|
[99] | 828 | |
---|
[571] | 829 | echo cp $@ > out_rsync 2>&1 |
---|
| 830 | \cp $@ >> out_rsync 2>&1 |
---|
| 831 | RET=$? |
---|
[99] | 832 | |
---|
[571] | 833 | if [ ${RET} -gt 0 ] ; then |
---|
| 834 | echo "IGCM_sys_Cp : error." |
---|
| 835 | cat out_rsync |
---|
| 836 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 837 | else |
---|
| 838 | \rm out_rsync |
---|
| 839 | fi |
---|
| 840 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[99] | 841 | } |
---|
| 842 | |
---|
| 843 | #D-#================================================== |
---|
| 844 | #D-function IGCM_sys_Rm |
---|
| 845 | #D-* Purpose: generic rm |
---|
| 846 | #D-* Examples: |
---|
| 847 | #D- |
---|
| 848 | function IGCM_sys_Rm { |
---|
[571] | 849 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 850 | if ( $DEBUG_sys ) ; then |
---|
| 851 | echo "IGCM_sys_Rm :" $@ |
---|
| 852 | fi |
---|
[99] | 853 | |
---|
[571] | 854 | typeset RET |
---|
[99] | 855 | |
---|
[571] | 856 | echo rm $@ > out_rsync 2>&1 |
---|
| 857 | \rm $@ >> out_rsync 2>&1 |
---|
| 858 | RET=$? |
---|
[99] | 859 | |
---|
[571] | 860 | if [ ${RET} -gt 0 ] ; then |
---|
| 861 | echo "IGCM_sys_Rm : error." |
---|
| 862 | cat out_rsync |
---|
| 863 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 864 | else |
---|
| 865 | \rm out_rsync |
---|
| 866 | fi |
---|
| 867 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[99] | 868 | } |
---|
| 869 | |
---|
| 870 | #D-#================================================== |
---|
| 871 | #D-function IGCM_sys_Mv |
---|
| 872 | #D-* Purpose: generic move |
---|
| 873 | #D-* Examples: |
---|
| 874 | #D- |
---|
| 875 | function IGCM_sys_Mv { |
---|
[571] | 876 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 877 | if ( $DEBUG_sys ) ; then |
---|
| 878 | echo "IGCM_sys_Mv :" $@ |
---|
| 879 | fi |
---|
[99] | 880 | |
---|
[571] | 881 | if [ $DRYRUN = 0 ]; then |
---|
[99] | 882 | |
---|
[571] | 883 | typeset RET |
---|
[173] | 884 | |
---|
[571] | 885 | echo mv $@ > out_rsync 2>&1 |
---|
| 886 | \mv $@ >> out_rsync 2>&1 |
---|
| 887 | RET=$? |
---|
| 888 | |
---|
| 889 | if [ ${RET} -gt 0 ] ; then |
---|
| 890 | echo "IGCM_sys_Mv : error in mv." |
---|
| 891 | cat out_rsync |
---|
| 892 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[173] | 893 | else |
---|
[571] | 894 | \rm out_rsync |
---|
[99] | 895 | fi |
---|
[571] | 896 | else |
---|
| 897 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 898 | fi |
---|
[99] | 899 | |
---|
[571] | 900 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[99] | 901 | } |
---|
| 902 | |
---|
| 903 | #D-#================================================== |
---|
| 904 | #D-function IGCM_sys_Put_Dir |
---|
| 905 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 906 | #D-* Examples: |
---|
| 907 | #D- |
---|
| 908 | function IGCM_sys_Put_Dir { |
---|
[571] | 909 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 910 | if ( $DEBUG_sys ) ; then |
---|
| 911 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 912 | fi |
---|
| 913 | if [ $DRYRUN = 0 ]; then |
---|
| 914 | if [ ! -d ${1} ] ; then |
---|
| 915 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 916 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 917 | return |
---|
[99] | 918 | fi |
---|
| 919 | |
---|
[571] | 920 | typeset RET |
---|
[99] | 921 | |
---|
[571] | 922 | # Only if we use rsync |
---|
| 923 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 924 | # |
---|
| 925 | #USUAL WAY |
---|
| 926 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 927 | RET=$? |
---|
[99] | 928 | |
---|
[571] | 929 | if [ ${RET} -gt 0 ] ; then |
---|
| 930 | echo "IGCM_sys_Put_Dir : error." |
---|
| 931 | cat out_rsync |
---|
| 932 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[99] | 933 | else |
---|
[571] | 934 | \rm out_rsync |
---|
[99] | 935 | fi |
---|
[571] | 936 | else |
---|
| 937 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 938 | fi |
---|
| 939 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[99] | 940 | } |
---|
| 941 | |
---|
| 942 | #D-#================================================== |
---|
| 943 | #D-function IGCM_sys_Get_Dir |
---|
[571] | 944 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[99] | 945 | #D-* Examples: |
---|
| 946 | #D- |
---|
| 947 | function IGCM_sys_Get_Dir { |
---|
[571] | 948 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 949 | if ( $DEBUG_sys ) ; then |
---|
| 950 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 951 | fi |
---|
| 952 | if [ $DRYRUN = 0 ]; then |
---|
| 953 | # if [ ! -d ${1} ] ; then |
---|
| 954 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 955 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 956 | # return |
---|
| 957 | # fi |
---|
[99] | 958 | |
---|
[571] | 959 | typeset RET |
---|
[99] | 960 | |
---|
[571] | 961 | # Only if we use rsync |
---|
| 962 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 963 | # |
---|
| 964 | # USUAL WAY |
---|
| 965 | # add dmfind/dmget (to demigrate all offline files) : |
---|
[592] | 966 | #dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget |
---|
[571] | 967 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 968 | RET=$? |
---|
[99] | 969 | |
---|
[571] | 970 | if [ ${RET} -gt 0 ] ; then |
---|
| 971 | echo "IGCM_sys_Get_Dir : error." |
---|
| 972 | cat out_rsync |
---|
| 973 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[99] | 974 | else |
---|
[571] | 975 | \rm out_rsync |
---|
[99] | 976 | fi |
---|
[571] | 977 | else |
---|
| 978 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 979 | fi |
---|
| 980 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[99] | 981 | } |
---|
| 982 | |
---|
| 983 | #D-#================================================== |
---|
| 984 | #D-function IGCM_sys_Put_Rest |
---|
[571] | 985 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[99] | 986 | #D- File and target directory must exist. |
---|
| 987 | #D-* Examples: |
---|
| 988 | #D- |
---|
| 989 | function IGCM_sys_Put_Rest { |
---|
[571] | 990 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 991 | if ( $DEBUG_sys ) ; then |
---|
| 992 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 993 | fi |
---|
| 994 | if [ $DRYRUN = 0 ]; then |
---|
| 995 | if [ ! -f ${1} ] ; then |
---|
| 996 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 997 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[99] | 998 | fi |
---|
| 999 | |
---|
[571] | 1000 | typeset RET |
---|
| 1001 | # |
---|
| 1002 | if [ X${JobType} = XRUN ] ; then |
---|
| 1003 | IGCM_sys_Chmod 444 ${1} |
---|
| 1004 | fi |
---|
[99] | 1005 | |
---|
[571] | 1006 | # |
---|
| 1007 | # USUAL WAY |
---|
| 1008 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1009 | RET=$? |
---|
| 1010 | |
---|
[192] | 1011 | # #RSYNC WITH NETWORK SSH CALL |
---|
[571] | 1012 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1013 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[99] | 1014 | |
---|
| 1015 | # #RSYNC WITH NFS USE |
---|
[192] | 1016 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1017 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[99] | 1018 | |
---|
| 1019 | # RET=$? |
---|
| 1020 | # IGCM_sys_Rsync_out $RET |
---|
| 1021 | |
---|
| 1022 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1023 | # (( RET=RET+$? )) |
---|
| 1024 | |
---|
[571] | 1025 | if [ ${RET} -gt 0 ] ; then |
---|
| 1026 | echo "IGCM_sys_Put_Rest : error." |
---|
| 1027 | cat out_rsync |
---|
| 1028 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[99] | 1029 | else |
---|
[571] | 1030 | \rm out_rsync |
---|
[99] | 1031 | fi |
---|
[571] | 1032 | else |
---|
| 1033 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1034 | fi |
---|
| 1035 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[99] | 1036 | } |
---|
| 1037 | |
---|
| 1038 | #D-#================================================== |
---|
[571] | 1039 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1040 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1041 | #D- File and target directory must exist. |
---|
| 1042 | #D-* Examples: |
---|
| 1043 | #D- |
---|
| 1044 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1045 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1046 | if ( $DEBUG_sys ) ; then |
---|
| 1047 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1048 | fi |
---|
| 1049 | if [ $DRYRUN = 0 ]; then |
---|
| 1050 | if [ ! -f ${1} ] ; then |
---|
| 1051 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1052 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1053 | fi |
---|
| 1054 | |
---|
| 1055 | typeset RET |
---|
| 1056 | # |
---|
| 1057 | if [ X${JobType} = XRUN ] ; then |
---|
| 1058 | IGCM_sys_Chmod 444 ${1} |
---|
| 1059 | fi |
---|
| 1060 | |
---|
| 1061 | # |
---|
| 1062 | # USUAL WAY |
---|
| 1063 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1064 | RET=$? |
---|
| 1065 | |
---|
| 1066 | if [ ${RET} -gt 0 ] ; then |
---|
| 1067 | echo "IGCM_sys_PutBuffer_Rest : error." |
---|
| 1068 | cat out_rsync |
---|
| 1069 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1070 | else |
---|
| 1071 | \rm out_rsync |
---|
| 1072 | fi |
---|
| 1073 | else |
---|
| 1074 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1075 | fi |
---|
| 1076 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1077 | } |
---|
| 1078 | |
---|
| 1079 | #D-#================================================== |
---|
[99] | 1080 | #D-function IGCM_sys_Put_Out |
---|
[571] | 1081 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[99] | 1082 | #D-* Examples: |
---|
| 1083 | #D- |
---|
| 1084 | function IGCM_sys_Put_Out { |
---|
[571] | 1085 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1086 | if ( $DEBUG_sys ) ; then |
---|
| 1087 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1088 | fi |
---|
| 1089 | if [ $DRYRUN = 0 ]; then |
---|
| 1090 | if [ ! -f ${1} ] ; then |
---|
| 1091 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1092 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1093 | return 1 |
---|
[99] | 1094 | fi |
---|
[571] | 1095 | # |
---|
| 1096 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1097 | # |
---|
| 1098 | typeset RET |
---|
[99] | 1099 | |
---|
[571] | 1100 | #===================================================== |
---|
| 1101 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1102 | #===================================================== |
---|
[99] | 1103 | |
---|
[571] | 1104 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1105 | #if [ $? -eq 0 ] ; then |
---|
| 1106 | # typeset WORKPATH FILEPATH |
---|
| 1107 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
| 1108 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
| 1109 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1110 | # # |
---|
| 1111 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1112 | #fi |
---|
[99] | 1113 | |
---|
[571] | 1114 | if [ X${JobType} = XRUN ] ; then |
---|
| 1115 | if [ X${3} = X ] ; then |
---|
| 1116 | IGCM_sys_Chmod 444 ${1} |
---|
| 1117 | fi |
---|
| 1118 | fi |
---|
| 1119 | # |
---|
| 1120 | # USUAL WAY |
---|
| 1121 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1122 | RET=$? |
---|
[99] | 1123 | |
---|
[192] | 1124 | # #RSYNC WITH NETWORK SSH CALL |
---|
[571] | 1125 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1126 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[99] | 1127 | |
---|
| 1128 | # #RSYNC WITH NFS USE |
---|
[192] | 1129 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1130 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[99] | 1131 | |
---|
| 1132 | # RET=$? |
---|
| 1133 | # IGCM_sys_Rsync_out $RET |
---|
| 1134 | |
---|
| 1135 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1136 | # (( RET=RET+$? )) |
---|
| 1137 | |
---|
[571] | 1138 | if [ ${RET} -gt 0 ] ; then |
---|
| 1139 | echo "IGCM_sys_Put_Out : error." |
---|
| 1140 | cat out_rsync |
---|
| 1141 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[99] | 1142 | else |
---|
[571] | 1143 | \rm out_rsync |
---|
[99] | 1144 | fi |
---|
[571] | 1145 | else |
---|
| 1146 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1147 | fi |
---|
| 1148 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1149 | return 0 |
---|
[99] | 1150 | } |
---|
| 1151 | |
---|
| 1152 | #D-#================================================== |
---|
[571] | 1153 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1154 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1155 | #D-* Examples: |
---|
| 1156 | #D- |
---|
| 1157 | function IGCM_sys_PutBuffer_Out { |
---|
| 1158 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1159 | if ( $DEBUG_sys ) ; then |
---|
| 1160 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1161 | fi |
---|
| 1162 | if [ $DRYRUN = 0 ]; then |
---|
| 1163 | if [ ! -f ${1} ] ; then |
---|
| 1164 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1165 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1166 | return 1 |
---|
| 1167 | fi |
---|
| 1168 | # |
---|
| 1169 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1170 | # |
---|
| 1171 | typeset RET |
---|
| 1172 | |
---|
| 1173 | if [ X${JobType} = XRUN ] ; then |
---|
| 1174 | if [ X${3} = X ] ; then |
---|
| 1175 | IGCM_sys_Chmod 444 ${1} |
---|
| 1176 | fi |
---|
| 1177 | fi |
---|
| 1178 | # |
---|
| 1179 | # USUAL WAY |
---|
| 1180 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1181 | RET=$? |
---|
| 1182 | |
---|
| 1183 | if [ ${RET} -gt 0 ] ; then |
---|
| 1184 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1185 | cat out_rsync |
---|
| 1186 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1187 | else |
---|
| 1188 | \rm out_rsync |
---|
| 1189 | fi |
---|
| 1190 | else |
---|
| 1191 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1192 | fi |
---|
| 1193 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1194 | return 0 |
---|
| 1195 | } |
---|
| 1196 | |
---|
| 1197 | #D-#================================================== |
---|
[99] | 1198 | #D-function IGCM_sys_Get |
---|
| 1199 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1200 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1201 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1202 | function IGCM_sys_Get { |
---|
[571] | 1203 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[99] | 1204 | |
---|
[571] | 1205 | typeset DEST RET dm_liste ifile target file_work |
---|
[99] | 1206 | |
---|
[571] | 1207 | if ( $DEBUG_sys ) ; then |
---|
| 1208 | echo "IGCM_sys_Get :" $@ |
---|
| 1209 | fi |
---|
| 1210 | if [ $DRYRUN -le 2 ]; then |
---|
| 1211 | if [ X${1} = X'/l' ] ; then |
---|
| 1212 | # test if the first file is present in the old computation : |
---|
| 1213 | eval set +A dm_liste \${${2}} |
---|
| 1214 | else |
---|
| 1215 | eval set +A dm_liste ${1} |
---|
[99] | 1216 | fi |
---|
[571] | 1217 | eval DEST=\${${#}} |
---|
[99] | 1218 | |
---|
[571] | 1219 | #===================================================== |
---|
| 1220 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1221 | #===================================================== |
---|
[99] | 1222 | |
---|
[571] | 1223 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1224 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1225 | #if [ $? -eq 0 ] ; then |
---|
| 1226 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1227 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1228 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1229 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1230 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1231 | # return |
---|
| 1232 | # fi |
---|
| 1233 | #fi |
---|
[99] | 1234 | |
---|
[571] | 1235 | # test if the (first) file is present in the old computation : |
---|
| 1236 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
| 1237 | RET=$? |
---|
| 1238 | if [ ${RET} -gt 0 ] ; then |
---|
| 1239 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1240 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1241 | fi |
---|
[99] | 1242 | |
---|
[592] | 1243 | #dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1244 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[571] | 1245 | RET=$? |
---|
| 1246 | if [ ${RET} -gt 0 ] ; then |
---|
| 1247 | echo "WARNING IGCM_sys_Get : demigration error." |
---|
| 1248 | cat out_rsync |
---|
| 1249 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1250 | fi |
---|
[99] | 1251 | |
---|
[571] | 1252 | #if [ ${RET} -gt 0 ] ; then |
---|
| 1253 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1254 | # cat out_rsync |
---|
| 1255 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1256 | # sleep 30 |
---|
| 1257 | # echo "We try another time" |
---|
[592] | 1258 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1259 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[571] | 1260 | # RET=$? |
---|
| 1261 | # if [ ${RET} -gt 0 ] ; then |
---|
| 1262 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1263 | # cat out_rsync |
---|
| 1264 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1265 | # fi |
---|
| 1266 | # else |
---|
| 1267 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1268 | # cat out_rsync |
---|
| 1269 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1270 | # fi |
---|
| 1271 | #fi |
---|
[99] | 1272 | |
---|
[571] | 1273 | #USUAL WAY |
---|
| 1274 | if [ X${1} = X'/l' ] ; then |
---|
| 1275 | (( RET=0 )) |
---|
| 1276 | for target in ${dm_liste[*]} ; do |
---|
| 1277 | local_file=$( basename ${target} ) |
---|
| 1278 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1279 | (( RET = RET + $? )) |
---|
| 1280 | done |
---|
| 1281 | else |
---|
| 1282 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1283 | RET=$? |
---|
| 1284 | fi |
---|
| 1285 | |
---|
[192] | 1286 | # #RSYNC WITH NETWORK SSH CALL |
---|
[571] | 1287 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1288 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[99] | 1289 | |
---|
| 1290 | # #RSYNC WITH NFS USE |
---|
[192] | 1291 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1292 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
[99] | 1293 | |
---|
| 1294 | # RET=$? |
---|
| 1295 | # IGCM_sys_Rsync_out $RET |
---|
| 1296 | |
---|
| 1297 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1298 | # (( RET=RET+$? )) |
---|
| 1299 | |
---|
[571] | 1300 | if [ ${RET} -gt 0 ] ; then |
---|
| 1301 | echo "IGCM_sys_Get : copy error." |
---|
| 1302 | cat out_rsync |
---|
| 1303 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[99] | 1304 | else |
---|
[571] | 1305 | \rm out_rsync |
---|
[99] | 1306 | fi |
---|
[571] | 1307 | else |
---|
| 1308 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1309 | fi |
---|
| 1310 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[99] | 1311 | } |
---|
| 1312 | |
---|
[571] | 1313 | #D-#================================================== |
---|
| 1314 | #D-function IGCM_sys_GetBuffer |
---|
| 1315 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1316 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1317 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1318 | function IGCM_sys_GetBuffer { |
---|
| 1319 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
[99] | 1320 | |
---|
[571] | 1321 | typeset DEST RET buf_liste ifile target file_work |
---|
| 1322 | |
---|
| 1323 | if ( $DEBUG_sys ) ; then |
---|
| 1324 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1325 | fi |
---|
| 1326 | if [ $DRYRUN -le 2 ]; then |
---|
| 1327 | if [ X${1} = X'/l' ] ; then |
---|
| 1328 | # test if the first file is present in the old computation : |
---|
| 1329 | eval set +A buf_liste \${${2}} |
---|
| 1330 | else |
---|
| 1331 | eval set +A buf_liste ${1} |
---|
| 1332 | fi |
---|
| 1333 | eval DEST=\${${#}} |
---|
| 1334 | |
---|
| 1335 | #USUAL WAY |
---|
| 1336 | if [ X${1} = X'/l' ] ; then |
---|
| 1337 | (( RET=0 )) |
---|
| 1338 | for target in ${buf_liste[*]} ; do |
---|
| 1339 | local_file=$( basename ${target} ) |
---|
| 1340 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1341 | (( RET = RET + $? )) |
---|
| 1342 | done |
---|
| 1343 | else |
---|
| 1344 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1345 | RET=$? |
---|
| 1346 | fi |
---|
| 1347 | |
---|
| 1348 | if [ ${RET} -gt 0 ] ; then |
---|
| 1349 | echo "IGCM_sys_GetBuffer : copy error." |
---|
| 1350 | cat out_rsync |
---|
| 1351 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1352 | else |
---|
| 1353 | \rm out_rsync |
---|
| 1354 | fi |
---|
| 1355 | else |
---|
| 1356 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1357 | fi |
---|
| 1358 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1359 | } |
---|
| 1360 | |
---|
[99] | 1361 | #D-#================================================== |
---|
| 1362 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1363 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1364 | #D-* Examples: |
---|
| 1365 | #D- |
---|
| 1366 | function IGCM_sys_GetDate_FichWork { |
---|
[571] | 1367 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1368 | if ( $DEBUG_sys ) ; then |
---|
| 1369 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1370 | fi |
---|
| 1371 | typeset dateF |
---|
| 1372 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1373 | eval ${2}=${dateF[5]} |
---|
| 1374 | |
---|
[99] | 1375 | # donne la date filesys d'un fichier sur la machine work |
---|
[571] | 1376 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[99] | 1377 | } |
---|
| 1378 | |
---|
| 1379 | #D-#================================================== |
---|
| 1380 | #D-function IGCM_sys_GetDate_FichArchive |
---|
| 1381 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
| 1382 | #D-* Examples: |
---|
| 1383 | #D- |
---|
| 1384 | function IGCM_sys_GetDate_FichArchive { |
---|
[571] | 1385 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1386 | if ( $DEBUG_sys ) ; then |
---|
| 1387 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1388 | fi |
---|
| 1389 | typeset dateF |
---|
| 1390 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1391 | eval ${2}=${dateF[5]} |
---|
| 1392 | |
---|
| 1393 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
[99] | 1394 | } |
---|
| 1395 | |
---|
| 1396 | ############################################################## |
---|
| 1397 | # REBUILD OPERATOR |
---|
| 1398 | |
---|
| 1399 | function IGCM_sys_rebuild { |
---|
[571] | 1400 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1401 | if ( $DEBUG_sys ) ; then |
---|
| 1402 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1403 | fi |
---|
| 1404 | /home/cont003/p86ipsl/SX8/bin/rebuild -f -o $@ |
---|
| 1405 | if [ $? -gt 0 ] ; then |
---|
| 1406 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
| 1407 | IGCM_debug_Exit "rebuild" |
---|
| 1408 | fi |
---|
[99] | 1409 | |
---|
[571] | 1410 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[99] | 1411 | } |
---|
| 1412 | |
---|
| 1413 | ############################################################ |
---|
| 1414 | # Activate Running Environnment Variables |
---|
| 1415 | |
---|
| 1416 | function IGCM_sys_activ_variables { |
---|
[571] | 1417 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1418 | if ( $DEBUG_sys ) ; then |
---|
| 1419 | echo "IGCM_sys_activ_variables" |
---|
| 1420 | fi |
---|
[99] | 1421 | |
---|
| 1422 | # -------------------------------------------------------------------- |
---|
| 1423 | #D- MPI specifications |
---|
| 1424 | # -------------------------------------------------------------------- |
---|
| 1425 | |
---|
| 1426 | #D-- MPISUSPEND |
---|
[571] | 1427 | export MPISUSPEND=${MPISUSPEND:=OFF} |
---|
[136] | 1428 | |
---|
| 1429 | #D-- MPIPROGINF #other choices : ALL_DETAIL2 |
---|
[571] | 1430 | export MPIPROGINF=ALL |
---|
[136] | 1431 | #D- activate ftrace (with -ftrace) |
---|
[571] | 1432 | export F_FTRACE=YES |
---|
[136] | 1433 | #D- communication information (with -ftrace) |
---|
[571] | 1434 | export MPICOMMINF=DETAIL |
---|
[99] | 1435 | |
---|
| 1436 | # -------------------------------------------------------------------- |
---|
| 1437 | #D- Other specifications |
---|
| 1438 | # -------------------------------------------------------------------- |
---|
| 1439 | |
---|
| 1440 | #D- max number of character/line in output job |
---|
[571] | 1441 | export F_SYSLEN=5000 |
---|
[99] | 1442 | #D- number of error that can be admitted on the NEC |
---|
[571] | 1443 | export F_ERRCNT=0 |
---|
[99] | 1444 | #D- global performance |
---|
[571] | 1445 | export F_PROGINF=DETAIL |
---|
[136] | 1446 | |
---|
[99] | 1447 | #D- I/O performance (FORTRAN I/O only not netCDF) |
---|
[571] | 1448 | export F_FILEINF=${F_FILEINF:=NO} |
---|
[136] | 1449 | #D- netCDF I/O performance |
---|
[571] | 1450 | export NC_FILEINF=${NC_FILEINF:=NO} |
---|
[99] | 1451 | |
---|
[571] | 1452 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[99] | 1453 | } |
---|
| 1454 | |
---|
| 1455 | ############################################################ |
---|
| 1456 | # Desactivate Running Environnment Variables |
---|
| 1457 | |
---|
| 1458 | function IGCM_sys_desactiv_variables { |
---|
[571] | 1459 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1460 | if ( $DEBUG_sys ) ; then |
---|
| 1461 | echo "IGCM_sys_desactiv_variables" |
---|
| 1462 | fi |
---|
[99] | 1463 | # -------------------------------------------------------------------- |
---|
| 1464 | #D- MPI specifications |
---|
| 1465 | # -------------------------------------------------------------------- |
---|
| 1466 | |
---|
| 1467 | #D-- MPIPROGINF |
---|
[571] | 1468 | export MPIPROGINF=NO |
---|
[99] | 1469 | |
---|
| 1470 | # -------------------------------------------------------------------- |
---|
| 1471 | #D- Other specifications |
---|
| 1472 | # -------------------------------------------------------------------- |
---|
| 1473 | |
---|
| 1474 | #D- global performance |
---|
[571] | 1475 | export F_PROGINF=NO |
---|
[99] | 1476 | |
---|
[571] | 1477 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[99] | 1478 | } |
---|
| 1479 | |
---|
| 1480 | ############################################################ |
---|
[558] | 1481 | # Build MPI/OMP scripts |
---|
| 1482 | function IGCM_sys_build_execution_scripts |
---|
| 1483 | { |
---|
| 1484 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
[99] | 1485 | if ( $DEBUG_sys ) ; then |
---|
[558] | 1486 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
[99] | 1487 | fi |
---|
[558] | 1488 | |
---|
| 1489 | typeset NbNodes_Job NbProc_Job comp_proc_mpi_loc comp_proc_omp_loc mpi_count |
---|
[99] | 1490 | |
---|
[558] | 1491 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
| 1492 | IGCM_debug_Exit "IGCM_sys_mercurex9 build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
| 1493 | fi |
---|
[99] | 1494 | |
---|
[558] | 1495 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1496 | |
---|
| 1497 | if [ -f run_file ] ; then |
---|
| 1498 | IGCM_sys_Rm -f run_file |
---|
| 1499 | fi |
---|
| 1500 | touch run_file |
---|
| 1501 | |
---|
| 1502 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1503 | IGCM_debug_Print 2 "Error in config.card on SX9 : OpenMP not available" |
---|
| 1504 | exit 1 |
---|
| 1505 | else |
---|
| 1506 | # OLD : |
---|
| 1507 | #PBS -v BATCH_NUM_PROC_TOT=4 |
---|
| 1508 | #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} |
---|
| 1509 | echo "Job_${config_UserChoices_JobName} includes BATCH_NUM_PROC_TOT = \c" |
---|
[559] | 1510 | cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" |
---|
| 1511 | NbProc_Job=$( cat ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} | grep -- "-v *BATCH_NUM_PROC_TOT" | sed -e "s/.*BATCH_NUM_PROC_TOT *= *//" ) |
---|
[558] | 1512 | NbProc_Job=${NbProc_Job:=0} |
---|
| 1513 | if [ ${NbProc_Job} -eq 0 ] ; then |
---|
| 1514 | IGCM_debug_Print 2 "Error in Job_${config_UserChoices_JobName} ressources : no BATCH_NUM_PROC_TOT defined with MPI only run." |
---|
| 1515 | exit 1 |
---|
| 1516 | fi |
---|
| 1517 | fi |
---|
| 1518 | |
---|
| 1519 | # run_file construction |
---|
| 1520 | |
---|
| 1521 | # Then first loop on the components for the coupler ie oasis |
---|
| 1522 | |
---|
| 1523 | ### the coupler ie oasis must be the first one |
---|
| 1524 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1525 | |
---|
| 1526 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1527 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1528 | |
---|
| 1529 | # for CPL component only |
---|
| 1530 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1531 | |
---|
| 1532 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1533 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1534 | |
---|
| 1535 | if ( ${OK_PARA_MPI} ) ; then |
---|
[560] | 1536 | echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file |
---|
[558] | 1537 | fi |
---|
| 1538 | fi |
---|
| 1539 | done |
---|
| 1540 | |
---|
| 1541 | # Then second loop on the components |
---|
| 1542 | |
---|
| 1543 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1544 | |
---|
| 1545 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1546 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1547 | |
---|
| 1548 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1549 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1550 | |
---|
| 1551 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1552 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1553 | |
---|
| 1554 | if ( ${OK_PARA_MPI} ) ; then |
---|
[560] | 1555 | echo "-p ${comp_proc_mpi_loc} -e ./${ExeNameOut}" >> run_file |
---|
[558] | 1556 | fi |
---|
| 1557 | fi |
---|
| 1558 | done |
---|
| 1559 | |
---|
| 1560 | EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file" |
---|
| 1561 | |
---|
| 1562 | IGCM_sys_Chmod u+x run_file |
---|
| 1563 | if ( $DEBUG_sys ) ; then |
---|
| 1564 | echo "run_file contains : " |
---|
| 1565 | cat run_file |
---|
[99] | 1566 | fi |
---|
| 1567 | |
---|
[558] | 1568 | else # Only one executable. launch it. |
---|
| 1569 | |
---|
| 1570 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1571 | |
---|
| 1572 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1573 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1574 | |
---|
| 1575 | [ "X${ExeNameOut}" != X\"\" ] && EXECUTION="time mpirun -np ${BATCH_NUM_PROC_TOT} ./${ExeNameOut}" |
---|
| 1576 | |
---|
| 1577 | done |
---|
| 1578 | |
---|
| 1579 | fi |
---|
| 1580 | |
---|
| 1581 | IGCM_debug_Print 1 "sys mercurex9 : execution command is " |
---|
| 1582 | IGCM_debug_Print 1 "$EXECUTION" |
---|
| 1583 | |
---|
| 1584 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[571] | 1585 | |
---|
[99] | 1586 | } |
---|
[558] | 1587 | |
---|
| 1588 | function IGCM_sys_build_run_file { |
---|
| 1589 | |
---|
| 1590 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
| 1591 | |
---|
| 1592 | } |
---|
| 1593 | |
---|