[314] | 1 | #-Q- cesium #!/bin/ksh |
---|
| 2 | #-Q- cesium ###################### |
---|
| 3 | #-Q- cesium ## CESIUM CEA ## |
---|
| 4 | #-Q- cesium ###################### |
---|
| 5 | #-Q- cesium #MSUB -r REBUILDWRK # Nom du job |
---|
| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
---|
| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
---|
| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
---|
| 9 | #-Q- cesium #MSUB -E "-j o" |
---|
| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
---|
[563] | 11 | #-Q- curie ###################### |
---|
| 12 | #-Q- curie ## CURIE TGCC/CEA ## |
---|
| 13 | #-Q- curie ###################### |
---|
| 14 | #-Q- curie #MSUB -r TS # Nom du job |
---|
| 15 | #-Q- curie #MSUB -eo |
---|
| 16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
---|
| 17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
---|
[108] | 18 | #-Q- platine #!/usr/bin/ksh |
---|
| 19 | #-Q- platine ################### |
---|
| 20 | #-Q- platine ## PLATINE CEA ## |
---|
| 21 | #-Q- platine ################### |
---|
| 22 | #-Q- platine #BSUB -J REBUILDWRK # Nom du job |
---|
| 23 | #-Q- platine #BSUB -N # message a la fin du job |
---|
| 24 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
---|
| 25 | #-Q- platine #BSUB -W 4:00 # Limite temps |
---|
| 26 | #-Q- platine #BSUB -q post # Passage en queue post |
---|
[426] | 27 | #-Q- platine #BSUB -L /bin/ksh |
---|
[108] | 28 | #-Q- sx8brodie #!/bin/ksh |
---|
| 29 | #-Q- sx8brodie ####################### |
---|
| 30 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
---|
| 31 | #-Q- sx8brodie ####################### |
---|
| 32 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
---|
[519] | 33 | #-Q- sx8brodie # @ wall_clock_limit = 10:00:00 |
---|
[108] | 34 | #-Q- sx8brodie # Nom du travail LoadLeveler |
---|
| 35 | #-Q- sx8brodie # @ job_name = REBUILDWRK |
---|
| 36 | #-Q- sx8brodie # Fichier de sortie standard du travail |
---|
| 37 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
---|
| 38 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
---|
| 39 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
---|
| 40 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 41 | #-Q- sx8brodie # @ notification = error |
---|
[387] | 42 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
[108] | 43 | #-Q- sx8brodie # @ queue |
---|
| 44 | #-Q- aix6 #!/bin/ksh |
---|
| 45 | #-Q- aix6 ####################### |
---|
| 46 | #-Q- aix6 ## VARGAS IDRIS ## |
---|
| 47 | #-Q- aix6 ####################### |
---|
| 48 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
---|
[519] | 49 | #-Q- aix6 # @ wall_clock_limit = 10:00:00 |
---|
[108] | 50 | #-Q- aix6 # Nom du travail LoadLeveler |
---|
| 51 | #-Q- aix6 # @ job_name = REBUILDWRK |
---|
| 52 | #-Q- aix6 # Fichier de sortie standard du travail |
---|
| 53 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
---|
| 54 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
---|
| 55 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
---|
| 56 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 57 | #-Q- aix6 # @ notification = error |
---|
[387] | 58 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
[108] | 59 | #-Q- aix6 # @ queue |
---|
[386] | 60 | #-Q- ulam #!/bin/ksh |
---|
| 61 | #-Q- ulam ####################### |
---|
| 62 | #-Q- ulam ## VARGAS IDRIS ## |
---|
| 63 | #-Q- ulam ####################### |
---|
| 64 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
---|
[519] | 65 | #-Q- ulam # @ wall_clock_limit = 10:00:00 |
---|
[386] | 66 | #-Q- ulam # Nom du travail LoadLeveler |
---|
| 67 | #-Q- ulam # @ job_name = REBUILDWRK |
---|
| 68 | #-Q- ulam # Fichier de sortie standard du travail |
---|
| 69 | #-Q- ulam # @ output = $(job_name).$(jobid) |
---|
| 70 | #-Q- ulam # Fichier de sortie d'erreur du travail |
---|
| 71 | #-Q- ulam # @ error = $(job_name).$(jobid) |
---|
| 72 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 73 | #-Q- ulam # @ notification = error |
---|
[387] | 74 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
[386] | 75 | #-Q- ulam # @ queue |
---|
[108] | 76 | #-Q- sx8mercure #!/bin/ksh |
---|
| 77 | #-Q- sx8mercure ###################### |
---|
| 78 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
---|
| 79 | #-Q- sx8mercure ###################### |
---|
| 80 | #-Q- sx8mercure #PBS -N REBUILDWRK # Nom du job |
---|
| 81 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
---|
| 82 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
---|
| 83 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
---|
| 84 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 1 heures |
---|
[299] | 85 | #-Q- sx8mercure #PBS -q scalaire |
---|
[172] | 86 | #-Q- sx9mercure #!/bin/ksh |
---|
| 87 | #-Q- sx9mercure ###################### |
---|
[316] | 88 | #-Q- sx9mercure ## CESIUM CEA ## |
---|
[172] | 89 | #-Q- sx9mercure ###################### |
---|
[316] | 90 | #-Q- sx9mercure #MSUB -r REBUILDWRK # Nom du job |
---|
| 91 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
---|
| 92 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
---|
| 93 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
---|
| 94 | #-Q- sx9mercure #MSUB -E "-j o" |
---|
| 95 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
---|
[222] | 96 | #-Q- titane #!/bin/ksh |
---|
| 97 | #-Q- titane ###################### |
---|
[451] | 98 | #-Q- titane ## TITANE CEA ## |
---|
[222] | 99 | #-Q- titane ###################### |
---|
| 100 | #-Q- titane #MSUB -r REBUILDWRK # Nom du job |
---|
[451] | 101 | #-Q- titane #MSUB -eo |
---|
[222] | 102 | #-Q- titane #MSUB -n 1 # Reservation du processus |
---|
| 103 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
---|
[478] | 104 | #-Q- titane #MSUB -q mono |
---|
[281] | 105 | #-Q- lxiv8 ###################### |
---|
| 106 | #-Q- lxiv8 ## OBELIX LSCE ## |
---|
| 107 | #-Q- lxiv8 ###################### |
---|
| 108 | #-Q- lxiv8 #PBS -N REBUILDWRK |
---|
| 109 | #-Q- lxiv8 #PBS -m a |
---|
| 110 | #-Q- lxiv8 #PBS -j oe |
---|
| 111 | #-Q- lxiv8 #PBS -q medium |
---|
| 112 | #-Q- lxiv8 #PBS -o REBUILDWRK.$$ |
---|
| 113 | #-Q- lxiv8 #PBS -S /bin/ksh |
---|
[108] | 114 | #-Q- default #!/bin/ksh |
---|
| 115 | #-Q- default ################## |
---|
| 116 | #-Q- default ## DEFAULT HOST ## |
---|
| 117 | #-Q- default ################## |
---|
| 118 | |
---|
[373] | 119 | #************************************************************** |
---|
| 120 | # Author: Sebastien Denvil |
---|
| 121 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
---|
| 122 | # $Revision:: $ Revision of last commit |
---|
| 123 | # $Author:: $ Author of last commit |
---|
| 124 | # $Date:: $ Date of last commit |
---|
[108] | 125 | # IPSL (2006) |
---|
| 126 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
[373] | 127 | # |
---|
| 128 | #************************************************************** |
---|
[108] | 129 | |
---|
| 130 | #set -eu |
---|
| 131 | #set -vx |
---|
| 132 | |
---|
| 133 | date |
---|
| 134 | |
---|
| 135 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
---|
| 136 | #-Q- aix6 export OMP_NUM_THREADS=1 |
---|
[386] | 137 | #-Q- ulam export OMP_NUM_THREADS=1 |
---|
[108] | 138 | |
---|
| 139 | ######################################################################## |
---|
| 140 | |
---|
| 141 | #D- Flag to determine if this job in a standalone mode |
---|
| 142 | #D- Default : value from AA_job if any |
---|
| 143 | StandAlone=${StandAlone:=true} |
---|
| 144 | |
---|
[571] | 145 | #D- Path to libIGCM |
---|
[206] | 146 | #D- Default : value from AA_job if any |
---|
[571] | 147 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
---|
| 148 | # WARNING you must check MirrorlibIGCM variable in sys library. |
---|
| 149 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
---|
| 150 | # WARNING of your running libIGCM directory. |
---|
[229] | 151 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
---|
[206] | 152 | |
---|
[327] | 153 | #-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer. |
---|
| 154 | MASTER=${MASTER:=mercure|titane|brodie|vargas} |
---|
| 155 | |
---|
[257] | 156 | #D- Do we rebuild parallel output from archive or from ${BIGDIR} |
---|
[206] | 157 | #D- Default : value from AA_job if any |
---|
[258] | 158 | RebuildFromArchive=${RebuildFromArchive:=false} |
---|
[257] | 159 | |
---|
| 160 | #D- Directory where files we need to rebuild are store |
---|
| 161 | #D- Default : value from AA_job if any |
---|
| 162 | #D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP |
---|
| 163 | #D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP |
---|
| 164 | #D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/ |
---|
| 165 | #D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW |
---|
[206] | 166 | REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES} |
---|
| 167 | |
---|
| 168 | #D- How many directory to rebuild we have to consider |
---|
| 169 | #D- Default : value from AA_job if any |
---|
[229] | 170 | NbRebuildDir=${NbRebuildDir:=1000} |
---|
[206] | 171 | |
---|
| 172 | #D- Suffix date we will use to determine which directory to rebuild |
---|
| 173 | #D- We will rebuild NbRebuildDir before and including PeriodDateBegin |
---|
| 174 | #D- Default : value from AA_job if any |
---|
[419] | 175 | LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}} |
---|
[206] | 176 | |
---|
[108] | 177 | #D- Flag to determine atlas job's output directory |
---|
| 178 | #D- Default : value from libIGCM_post.ksh if any |
---|
| 179 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
---|
| 180 | |
---|
[327] | 181 | #-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK. |
---|
| 182 | libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM} |
---|
| 183 | |
---|
[108] | 184 | #D- Increased verbosity (1, 2, 3) |
---|
| 185 | #D- Default : value from AA_job if any |
---|
| 186 | Verbosity=${Verbosity:=3} |
---|
| 187 | |
---|
| 188 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
| 189 | #D- Default : value from AA_job if any |
---|
| 190 | DEBUG_debug=${DEBUG_debug:=false} |
---|
| 191 | |
---|
| 192 | #D- TEMPORARY Flag to determine atmospheric resolution |
---|
| 193 | #D- Default : value from atmospheric driver if any |
---|
[135] | 194 | RESOL_ATM=${RESOL_ATM:=ALL} |
---|
[108] | 195 | |
---|
| 196 | #D- TEMPORARY Flag to determine ocean resolution |
---|
| 197 | #D- Default : value from ocean driver if any |
---|
| 198 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
---|
| 199 | |
---|
| 200 | #D- TEMPORARY Flag to determine ice resolution |
---|
| 201 | #D- Default : value from ice driver if any |
---|
| 202 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
---|
| 203 | |
---|
[196] | 204 | #D- TEMPORARY Flag to determine biogeochemistry resolution |
---|
| 205 | #D- Default : value from ice driver if any |
---|
[178] | 206 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
---|
| 207 | |
---|
[108] | 208 | #D- Flag to determine surface resolution |
---|
| 209 | #D- Default : value from surface driver if any |
---|
[213] | 210 | RESOL_SRF=ALL |
---|
[108] | 211 | |
---|
[213] | 212 | #D- Flag to determine surface resolution |
---|
| 213 | #D- Default : value from surface driver if any |
---|
| 214 | RESOL_SBG=ALL |
---|
[207] | 215 | |
---|
[108] | 216 | ######################################################################## |
---|
| 217 | |
---|
| 218 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 219 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
| 220 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 221 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
| 222 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 223 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
| 224 | #------- |
---|
| 225 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
| 226 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
---|
| 227 | |
---|
| 228 | ######################################################################## |
---|
| 229 | |
---|
| 230 | #set -vx |
---|
| 231 | |
---|
[202] | 232 | RUN_DIR=${RUN_DIR_PATH} |
---|
| 233 | IGCM_sys_MkdirWork ${RUN_DIR} |
---|
| 234 | IGCM_sys_Cd ${RUN_DIR} |
---|
[436] | 235 | |
---|
| 236 | # ------------------------------------------------------------------ |
---|
| 237 | # Test if all was right before proceeding further |
---|
| 238 | # ------------------------------------------------------------------ |
---|
| 239 | IGCM_debug_Verif_Exit_Post |
---|
| 240 | |
---|
[202] | 241 | # |
---|
[236] | 242 | if [ ${RebuildFromArchive} = true ] ; then |
---|
| 243 | ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
---|
| 244 | else |
---|
| 245 | ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
---|
| 246 | fi |
---|
[157] | 247 | # |
---|
[236] | 248 | |
---|
[108] | 249 | for directory in ${ListAllRebuildDir} ; do |
---|
| 250 | # |
---|
[236] | 251 | if [ ${RebuildFromArchive} = true ] ; then |
---|
| 252 | IGCM_sys_Get_Dir ${directory} ${RUN_DIR} |
---|
| 253 | else |
---|
| 254 | IGCM_sys_Get_Master ${directory} ${RUN_DIR} |
---|
| 255 | fi |
---|
[196] | 256 | # |
---|
[108] | 257 | IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} ) |
---|
| 258 | |
---|
| 259 | # -------------------------------------------------------------------- |
---|
| 260 | # Source function include in the REBUILD ksh and rebuild |
---|
| 261 | # -------------------------------------------------------------------- |
---|
| 262 | . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh |
---|
| 263 | IGCM_FlushRebuild |
---|
| 264 | # |
---|
| 265 | IGCM_sys_Cd ${RUN_DIR} |
---|
[147] | 266 | # Clean Up |
---|
[328] | 267 | # local clean up |
---|
[330] | 268 | IGCM_sys_Rm -rf $( basename ${directory} ) |
---|
[328] | 269 | # remote clean up |
---|
[236] | 270 | if [ ${RebuildFromArchive} = true ] ; then |
---|
| 271 | IGCM_sys_RshArchive rm -rf ${directory} |
---|
| 272 | else |
---|
[320] | 273 | IGCM_sys_RshMaster rm -rf ${directory} |
---|
[236] | 274 | fi |
---|
[108] | 275 | done |
---|
[203] | 276 | |
---|
[592] | 277 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 278 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
[592] | 279 | |
---|
| 280 | date |
---|