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source: branches/libIGCM_MPI_OpenMP/AA_create_ts @ 571

Last change on this file since 571 was 571, checked in by mafoipsl, 12 years ago
First try to merge libIGCM_MPI_OpenMP branch with libIGCM trunk revision 569. Tested on vargas with PackFrequency?=NONE included into config.card.
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
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1	#-Q- cesium #!/bin/ksh
2	#-Q- cesium ######################
3	#-Q- cesium ## CESIUM CEA ##
4	#-Q- cesium ######################
5	#-Q- cesium #MSUB -r TS # Nom du job
6	#-Q- cesium #MSUB -N 1 # Reservation du noeud
7	#-Q- cesium #MSUB -n 1 # Reservation du processus
8	#-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job
9	#-Q- cesium #MSUB -E "-j o"
10	#-Q- cesium #MSUB -E "-S /bin/ksh"
11	#-Q- curie ######################
12	#-Q- curie ## CURIE TGCC/CEA ##
13	#-Q- curie ######################
14	#-Q- curie #MSUB -r TS # Nom du job
15	#-Q- curie #MSUB -eo
16	#-Q- curie #MSUB -n 1 # Reservation du processus
17	#-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job
18	#-Q- platine #!/usr/bin/ksh
19	#-Q- platine ###################
20	#-Q- platine ## PLATINE CEA ##
21	#-Q- platine ###################
22	#-Q- platine #BSUB -J TS # Nom du job
23	#-Q- platine #BSUB -N # message a la fin du job
24	#-Q- platine #BSUB -n 1 # reservation des processeurs pour le job
25	#-Q- platine #BSUB -W 1:00 # Limite temps
26	#-Q- platine #BSUB -q post # Passage en queue post
27	#-Q- platine #BSUB -L /bin/ksh
28	#-Q- sx8brodie #!/bin/ksh
29	#-Q- sx8brodie #######################
30	#-Q- sx8brodie ## SX8BRODIE IDRIS ##
31	#-Q- sx8brodie #######################
32	#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
33	#-Q- sx8brodie # @ wall_clock_limit = 20:00:00
34	#-Q- sx8brodie # Nom du travail LoadLeveler
35	#-Q- sx8brodie # @ job_name = TS
36	#-Q- sx8brodie # Fichier de sortie standard du travail
37	#-Q- sx8brodie # @ output = $(job_name).$(jobid)
38	#-Q- sx8brodie # Fichier de sortie d'erreur du travail
39	#-Q- sx8brodie # @ error = $(job_name).$(jobid)
40	#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
41	#-Q- sx8brodie # @ notification = error
42	#-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
43	#-Q- sx8brodie # @ queue
44	#-Q- aix6 #!/bin/ksh
45	#-Q- aix6 #######################
46	#-Q- aix6 ## VARGAS IDRIS ##
47	#-Q- aix6 #######################
48	#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
49	#-Q- aix6 # @ wall_clock_limit = 20:00:00
50	#-Q- aix6 # Nom du travail LoadLeveler
51	#-Q- aix6 # @ job_name = TS
52	#-Q- aix6 # Fichier de sortie standard du travail
53	#-Q- aix6 # @ output = $(job_name).$(jobid)
54	#-Q- aix6 # Fichier de sortie d'erreur du travail
55	#-Q- aix6 # @ error = $(job_name).$(jobid)
56	#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57	#-Q- aix6 # @ notification = error
58	#-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
59	#-Q- aix6 # @ queue
60	#-Q- ulam #!/bin/ksh
61	#-Q- ulam #######################
62	#-Q- ulam ## ULAM IDRIS ##
63	#-Q- ulam #######################
64	#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
65	#-Q- ulam # @ wall_clock_limit = 20:00:00
66	#-Q- ulam # Nom du travail LoadLeveler
67	#-Q- ulam # @ job_name = TS
68	#-Q- ulam # Fichier de sortie standard du travail
69	#-Q- ulam # @ output = $(job_name).$(jobid)
70	#-Q- ulam # Fichier de sortie d'erreur du travail
71	#-Q- ulam # @ error = $(job_name).$(jobid)
72	#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
73	#-Q- ulam # @ notification = error
74	#-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
75	#-Q- ulam # @ queue
76	#-Q- sx8mercure #!/bin/ksh
77	#-Q- sx8mercure ######################
78	#-Q- sx8mercure ## SX8MERCURE CEA ##
79	#-Q- sx8mercure ######################
80	#-Q- sx8mercure #PBS -N TS # Nom du job
81	#-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr
82	#-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission
83	#-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go
84	#-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures
85	#-Q- sx8mercure #PBS -q scalaire
86	#-Q- sx9mercure #!/bin/ksh
87	#-Q- sx9mercure #########################
88	#-Q- sx9mercure ## CESIUM FOR SX9 CEA ##
89	#-Q- sx9mercure #########################
90	#-Q- sx9mercure #MSUB -r TS # Nom du job
91	#-Q- sx9mercure #MSUB -N 1 # Reservation du noeud
92	#-Q- sx9mercure #MSUB -n 1 # Reservation du processus
93	#-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job
94	#-Q- sx9mercure #MSUB -E "-j o"
95	#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
96	#-Q- titane #!/bin/ksh
97	#-Q- titane ######################
98	#-Q- titane ## TITANE CEA ##
99	#-Q- titane ######################
100	#-Q- titane #MSUB -r TS # Nom du job
101	#-Q- titane #MSUB -eo
102	#-Q- titane #MSUB -n 1 # Reservation du processus
103	#-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job
104	#-Q- titane #MSUB -q mono
105	#-Q- lxiv8 ######################
106	#-Q- lxiv8 ## OBELIX LSCE ##
107	#-Q- lxiv8 ######################
108	#-Q- lxiv8 #PBS -N TS
109	#-Q- lxiv8 #PBS -m a
110	#-Q- lxiv8 #PBS -j oe
111	#-Q- lxiv8 #PBS -q medium
112	#-Q- lxiv8 #PBS -o TS.$$
113	#-Q- lxiv8 #PBS -S /bin/ksh
114	#-Q- default #!/bin/ksh
115	#-Q- default ##################
116	#-Q- default ## DEFAULT HOST ##
117	#-Q- default ##################
118
119	#**************************************************************
120	# Author: Sebastien Denvil
121	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
122	# $Revision:: $ Revision of last commit
123	# $Author:: $ Author of last commit
124	# $Date:: $ Date of last commit
125	# IPSL (2006)
126	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
127	#
128	#**************************************************************
129
130	#set -eu
131	#set -vx
132
133	date
134
135	#-Q- sx8brodie export OMP_NUM_THREADS=1
136	#-Q- aix6 export OMP_NUM_THREADS=1
137	#-Q- ulam export OMP_NUM_THREADS=1
138
139	########################################################################
140
141	#D- Flag to determine if this job in a standalone mode
142	#D- Default : value from AA_job if any
143	StandAlone=${StandAlone:=true}
144
145	#D- Path to libIGCM
146	#D- Default : value from AA_job if any
147	# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
148	# WARNING you must check MirrorlibIGCM variable in sys library.
149	# WARNING If this variable is true, you must use libIGCM_POST path instead
150	# WARNING of your running libIGCM directory.
151	libIGCM=${libIGCM:=::modipsl::/libIGCM}
152
153	#D- Flag to determine allready produced time series. Empty if you start from the beginning
154	#D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series
155	CompletedFlag=${CompletedFlag:=}
156
157	#D- Flag to determine task type this script will perform.
158	#D- Possible Value : 2D, 3D, Chunck2D, Chunck3D
159	#D- Default : Value from AA_job if any. Usefull in StandAlone case.
160	TsTask=${TsTask:=2D}
161	if [ X${TsTask} = Xempty ] ; then
162	TsTask=""
163	fi
164
165	#D- Flag to determine if rebuild process has been performed asynchronously
166	#D- Possible value true or false.
167	#D- If true raw files has allready been patched by rebuild job
168	#D- If false create_ts will patch the raw files
169	#D- Default : Value from AA_job if any. Usefull in StandAlone case.
170	RebuildFrequency=${RebuildFrequency:=true}
171
172	#D- Flag to determine job's output directory
173	#D- Default : value from libIGCM_post.ksh if any
174	POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}}
175
176	#D- Increased verbosity (1, 2, 3)
177	#D- Default : value from AA_job if any
178	Verbosity=${Verbosity:=3}
179
180	#D- Low level debug : to bypass lib test checks and stack construction
181	#D- Default : value from AA_job if any
182	DEBUG_debug=${DEBUG_debug:=false}
183
184	#D- TEMPORARY Flag to determine atmospheric resolution
185	#D- Default : value from atmospheric driver if any
186	RESOL_ATM=ALL
187
188	#D- Flag to determine surface resolution
189	#D- Default : value from surface driver if any
190	RESOL_SRF=ALL
191
192	#D- Flag to determine surface resolution
193	#D- Default : value from surface driver if any
194	RESOL_SBG=ALL
195
196	#D- TEMPORARY Flag to determine ocean resolution
197	#D- Default : value from ocean driver if any
198	RESOL_OCE=${RESOL_OCE:=ORCA2}
199
200	#D- TEMPORARY Flag to determine ice resolution
201	#D- Default : value from ice driver if any
202	RESOL_ICE=${RESOL_ICE:=ORCA2}
203
204	#D- TEMPORARY Flag to determine marine biogeochemistry resolution
205	#D- Default : value from ice driver if any
206	RESOL_MBG=${RESOL_MBG:=ORCA2}
207
208	########################################################################
209
210	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
211	( ${DEBUG_debug} ) && IGCM_debug_Check
212	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
213	( ${DEBUG_debug} ) && IGCM_card_Check
214	. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
215	( ${DEBUG_debug} ) && IGCM_date_Check
216	#-------
217	. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
218
219	########################################################################
220
221	#set -vx
222
223	# Useful cleaning function
224	MENAGE ()
225	{
226	[ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;)
227	}
228
229	########################################################################
230
231	IGCM_sys_MkdirWork ${RUN_DIR_PATH}
232	IGCM_sys_Cd ${RUN_DIR_PATH}
233
234	# ------------------------------------------------------------------
235	# Test if all was right before proceeding further
236	# ------------------------------------------------------------------
237	IGCM_debug_Verif_Exit_Post
238
239	if [ ${StandAlone} = true ] ; then
240	CARD_DIR=${SUBMIT_DIR}
241	else
242	CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
243	IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
244	fi
245
246	#
247	# First of all
248	#
249	IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices
250	typeset option
251	for option in ${config_UserChoices[*]} ; do
252	IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
253	done
254	#
255	echo
256	IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices"
257	IGCM_debug_PrintVariables 3 config_UserChoices_JobName
258	IGCM_debug_PrintVariables 3 config_UserChoices_LongName
259	IGCM_debug_PrintVariables 3 config_UserChoices_TagName
260	IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
261	IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
262	IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
263	IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
264	IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
265	IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
266	echo
267
268	#==================================
269	#R_SAVE : Job output directory
270	#R_BUFR : Job output buffered directory
271	if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
272	FreeName=$( echo ${config_UserChoices_JobName} \| sed 's/.*_//' )
273	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
274	R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
275	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
276	else
277	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
278	R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
279	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
280	fi
281	#
282	# Determine component to take care of depending on kind of task create_ts will perform
283	#
284	[ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} \|\| IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents
285	#
286	# Determine period for time series. Default : value from AA_job or from launch_TS if any
287	#
288	[ X${CompletedFlag} = X ] \|\| CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} )
289
290	DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )}
291	#
292	PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )}
293	#
294	# Determine Dimension of the produced time series : 2D or 3D
295	if ( [ X${TsTask} = XChunck2D ] \|\| [ X${TsTask} = X2D ] ) ; then
296	Dimension=2D
297	elif ( [ X${TsTask} = XChunck3D ] \|\| [ X${TsTask} = X3D ] ) ; then
298	Dimension=3D
299	else
300	Dimension=""
301	fi
302
303	# ------------------------------------------------------------------
304	#D- Test if all was right before entering the loop
305	# ------------------------------------------------------------------
306	IGCM_debug_Verif_Exit_Post
307
308	########################################################################
309	#
310	# Depending on requested time series fill following variables :
311	#
312	# - LISTE_FILE_${comp}[*]
313	# - LISTE_VARS_${file}[*]
314	# - LISTE_AXIS_${file}[*]
315	# - LISTE_PATCH_${file}[*]
316	########################################################################
317
318	#
319	# For each selected component determine which files need post-processing
320	#
321	DoJob=false
322	for comp in ${config_ListOfComponents[*]} ; do
323	#
324	ActiveComp=false
325	#
326	IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp}
327	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
328	#
329	card=${CARD_DIR}/COMP/${compname}.card
330
331	IGCM_card_DefineArrayFromOption ${card} OutputFiles List
332	#
333	ListFilesName=${compname}_OutputFiles_List
334	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
335	#
336	if [ X${FileName0} != X${NULL_STR} ] ; then
337	#
338	#IGCM_debug_Print 1 "Component : ${compname}"
339	#
340	# INITIALISATION
341	#
342	typeset i
343	if [ ${FlagToRead} ] ; then
344	((NbFiles=${FlagToRead}))
345	((i=${NbFiles}))
346	else
347	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
348	i=2
349	fi
350	#
351	until [ $i -gt $NbFiles ]; do
352	#
353	eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1
354	#
355	if [ X${flag_post} != XNONE ] ; then
356	#
357	# For each comp and each file who needs post-processing
358	# determine which variables need time series.
359	#
360	FILE=$( echo ${flag_post} \| awk "-FPost_" '{print $2}' )
361	IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension}
362	IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension}
363	#
364	# If TimeSeriesVars list is empty we skip
365	#
366	if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then
367	#
368	IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}"
369	IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty"
370	(( i=i+3 ))
371	continue
372	#
373	fi
374	#
375	# If files/variables has been switch off by ChunckJob${Dimension}=0 we skip
376	#
377	if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then
378	IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}"
379	IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off"
380	(( i=i+3 ))
381	continue
382	fi
383	#
384	# If we are not a Chunck type task, we skip files/variables handled by chunck task
385	#
386	if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then
387	if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then
388	IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}"
389	IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )"
390	(( i=i+3 ))
391	continue
392	fi
393	fi
394	#
395	# Now on we know we have things to do
396	#
397
398	#
399	# We need coordinates axis to properly fill produced time series
400	#
401	IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal
402	#
403	if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then
404	#
405	IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}"
406	IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!"
407	(( i=i+3 ))
408	continue
409	#
410	fi
411	#
412	# We need LIST of variables not allready produced (useful for standalone mode)
413	#
414	FlagDir=$( echo ${FILE} \| awk -F "_" '{print $1}' )
415	case ${FlagDir} in
416	*Y) TS_Dir=TS_YE ;;
417	*M) TS_Dir=TS_MO ;;
418	*D) TS_Dir=TS_DA ;;
419	HF) TS_Dir=TS_HF ;;
420	3H) TS_Dir=TS_HF ;;
421	INS) TS_Dir=TS_INS ;;
422	esac
423	#
424	count=0
425	for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do
426	#
427	DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir}
428	TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc
429	#
430	IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile}
431	if [ ! $? = 0 ] ; then
432	eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var}
433	ActiveComp=true
434	(( count = count + 1 ))
435	fi
436	done
437	#
438	if [ ${count} -gt 0 ] ; then
439	#
440	eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE}
441	eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]}
442	#
443	if [ ! X${RebuildFrequency} = Xtrue ] ; then
444	IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches
445	eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]}
446	if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then
447	for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do
448	if [ Xload${Patch} != X ] ; then
449	. ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh
450	eval load${Patch}=loaded
451	fi
452	done
453	fi
454	fi
455	fi
456	fi
457	(( i=i+3 ))
458	done
459	fi
460	#
461	if [ ${ActiveComp} = true ] ; then
462	set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp}
463	fi
464	done
465
466	set -A config_ListOfComponents ${ActiveListOfComponents[*]}
467	[ ! -z "${ActiveListOfComponents}" ] && DoJob=true
468
469	########################################################################
470	#
471	# IS THERE SOME ALLREADY PRODUCED TIME SERIES ?
472	# IF SO BRING THEM IN THE WORKING DIRECTORY
473	#
474	# PS : Keep in mind that IGCM_sys_Get here is a weak link :
475	# - especially for IDRiS
476	# - no special protection against "command too long" !
477	# - libIGCM_sys should handle that or modify following code part
478	#
479	########################################################################
480
481	if [ ${StandAlone} != true ] ; then
482	Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \
483	${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \
484	echo \${run_PostProcessing_TimeSeriesRunning}" )
485
486	#if [ X${Running_Flag} = Xy ] ; then
487	# # Time Series Job allready running
488	# IGCM_debug_Print 1 "Time Series Job allready running exit"
489	# exit
490	#fi
491	# Now run.card know we are running
492
493
494
495
496	IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y"
497
498
499
500
501
502	# Get information from last execution
503	#CompletedFlag=$( IGCM_sys_RshMaster \
504	# "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\
505	# echo \${run_PostProcessing_TimeSeriesCompleted}" )
506	fi
507
508	# Is it the first submission or not ?
509
510	if ( [ X${CompletedFlag} = X ] \|\| [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then
511	# First Time Series Submission
512	FIRST_PASS=TRUE
513	Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin)
514	DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) )
515	else
516	# Last Completed Time Series
517	FIRST_PASS=FALSE
518	DATE_FIN_JOB_B=${CompletedFlag}
519	date=${DateBegin}_${DATE_FIN_JOB_B}
520	for comp in ${config_ListOfComponents[*]} ; do
521	#
522	IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp}
523	#
524	IGCM_sys_Cd ${RUN_DIR_PATH}/${comp}
525	#
526	#set -A liste_file
527	unset liste_file
528	#
529	file_path=${R_SAVE}/${comp}/Analyse
530	#
531	i=0
532	file=${NULL_STR}
533	#
534	for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do
535	#
536	# Determine in which output can we find file
537	# IE : Analyse/TS or Analyse/DA2TS or ...
538	#
539	FlagDir=$( echo ${file} \| awk -F "_" '{print $1}' )
540	case ${FlagDir} in
541	*Y) TS_Dir=TS_YE ;;
542	*M) TS_Dir=TS_MO ;;
543	*D) TS_Dir=TS_DA ;;
544	HF) TS_Dir=TS_HF ;;
545	3H) TS_Dir=TS_HF ;;
546	INS) TS_Dir=TS_INS ;;
547	esac
548	for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do
549	#
550	#set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc
551	liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc
552	#
553	done
554	done
555	if [ X${file} != X${NULL_STR} ] ; then
556	IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp}
557	# Even if some files are missing we tried to continue
558	# Either ListVar in compname.card are asked but not present in original history file
559	# Either a previous TS task failed
560	ExitFlag=false
561	IGCM_debug_Verif_Exit_Post
562	fi
563	done
564	#
565	LEVEL=0
566	#
567	fi
568
569	########################################################################
570	#
571	# DEFINE LOOP PARAMETERS
572	#
573	########################################################################
574
575	DATE_COUNT=${DATE_FIN_JOB_B}
576	DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B}
577
578	( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 \|\| NBRE_FILE_TOT=1
579
580	if [ ${DoJob} = true ] ; then
581	while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do
582	(( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 ))
583	Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} )
584	DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} )
585	done
586	else
587	NBRE_FILE_TOT=0
588	fi
589
590	if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then
591	NBRE_TOUR=1
592	elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then
593	let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}
594	else
595	let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1
596	fi
597
598	CURRENT_LOOP=1
599	# THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN.
600	# WE HAVE 3 LEVELS
601	# - LEVEL 1 : JUST ONE LOOP TO COMPLETE
602	# - LEVEL 2 : WE ARE IN THE "DEEP" LOOP
603	# - LEVEL 3 : WE ARE IN THE LAST LOOP
604
605	while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do
606
607	if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then
608	# - LEVEL 1 : JUST ONE LOOP TO COMPLETE
609	NBRE_FILE_LOOP=${NBRE_FILE_TOT}
610
611	if [ ${FIRST_PASS} = TRUE ] ; then
612	DATE_COURANTE=${DATE_FIN_JOB_B_LOOP}
613	else
614	Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} )
615	DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} )
616	fi
617
618	DATE_FIN=${PeriodDateEnd}
619	DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP}
620
621	[ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP}
622	[ -n "${LEVEL}" ] && FLAG_B="TRUE" \|\| FLAG_B="FALSE"
623
624	LEVEL=1
625	DEPOT="TRUE"
626	elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then
627	# - LEVEL 2 : WE ARE IN THE "DEEP" LOOP
628	NBRE_FILE_LOOP=${UNIX_MAX_LIMIT}
629
630	if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then
631	Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} )
632	DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} )
633	elif [ -z "${DATE_COURANTE}" ] ; then
634	DATE_COURANTE=${DATE_FIN_JOB_B}
635	else
636	Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} )
637	DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} )
638	fi
639
640	(( TotLength = 0 ))
641	COMPTEUR=1
642	DATE_LOOP=${DATE_COURANTE}
643
644	while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do
645	#
646	Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} )
647	DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} )
648	(( TotLength = TotLength + Length ))
649	(( COMPTEUR = COMPTEUR + 1 ))
650	#
651	done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done
652	DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} )
653
654	[ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP}
655	[ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" \|\| [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" \|\| FLAG_B="FALSE"
656	DEPOT="FALSE"
657	LEVEL=2
658	else
659	# - LEVEL 3 : WE ARE IN THE LAST LOOP
660	NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) ))
661	[ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT}
662
663	Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} )
664	DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} )
665	DATE_FIN=${PeriodDateEnd}
666	[ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP}
667
668	LEVEL=3
669	DEPOT="TRUE"
670	FLAG_B="TRUE"
671	fi
672
673	# THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN.
674	for comp in ${config_ListOfComponents[*]} ; do
675	#
676	IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp}
677	#
678	IGCM_sys_Cd ${RUN_DIR_PATH}/${comp}
679	#
680	eval R_OUT_${comp}=${R_SAVE}/${comp}
681	#
682	i=0
683	#
684	for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do
685	#
686	# Determine in which output can we find file
687	# IE : Output/MO or Output/DA or ...
688	#
689	FlagDir=$( echo ${file} \| awk -F "_" '{print $1}' )
690	case ${FlagDir} in
691	*Y) TS_Dir=TS_YE ; FreqDir=YE ;;
692	*M) TS_Dir=TS_MO ; FreqDir=MO ;;
693	*D) TS_Dir=TS_DA ; FreqDir=DA ;;
694	HF) TS_Dir=TS_HF ; FreqDir=HF ;;
695	3H) TS_Dir=TS_HF ; FreqDir=HF ;;
696	INS) TS_Dir=TS_INS ; FreqDir=INS ;;
697	*)
698	IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}."
699	IGCM_sys_Exit "Job create_ts" ;;
700	esac
701
702	# Initialize array
703	#set -A liste_file
704	#set -A liste_file_tmp
705	unset liste_file
706	unset liste_file_tmp
707	eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/
708
709	COMPTEUR=1
710	DATE_LOOP=${DATE_COURANTE}
711
712	while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do
713	#
714	Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end)
715	DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP}
716
717	Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} )
718	DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} )
719
720	#set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc
721	#set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc
722	liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc
723	liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc
724	(( COMPTEUR = COMPTEUR + 1 ))
725	#
726	done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done
727	DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} )
728
729	# Get selected files
730	IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp}
731	IGCM_debug_Verif_Exit_Post
732
733	# Apply IGCM_Patch if needed
734	if [ ! X${RebuildFrequency} = Xtrue ] ; then
735	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
736	for file_t in $( eval echo ${liste_file_tmp[*]} ); do
737	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
738	IGCM_${Patch} ${file_t}
739	IGCM_debug_Verif_Exit_Post
740	done
741	done
742	fi
743	fi
744
745	# WE CAN CONCATENATE FILES AT THIS POINT
746	[ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC}
747	Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end)
748	DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) )
749	DATE_BUILD=${DATE_BUILD1}_${DATE_FIN}
750	DATE_BUILD_END=${DateBegin}_${DATE_FIN}
751
752	liste_coord=" "
753	for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do
754	liste_coord=${liste_coord}${axis}","
755	done
756
757	# Time axis must be the last dimension
758	time_axis=${axis}
759
760	# SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE
761	for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do
762	#
763	if [ "${FLAG_B}" = "TRUE" ] ; then
764	# WE CONCATENATE WITH EXISTING FILES
765	file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc
766	file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc
767	IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out}
768	#
769	IGCM_sys_Rm ${file1}
770	if [ ! "${DEPOT}" = "TRUE" ] ; then
771	eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out}
772	# "${file1} = file_before ?
773	[ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out}
774	fi
775
776	ExitFlag=false
777	else
778	# OR NOT
779	IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc
780	fi
781
782	#
783	if [ "${DEPOT}" = "TRUE" ] ; then
784	# WE PUT FINAL FILE ON FILE SYSTEM
785	[ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc
786	file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc
787	#
788	eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out}
789	[ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out}
790	if [ ! "X${file1}" = "X" ] ; then
791	[ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out}
792	fi
793	#
794	if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then
795	file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc
796	file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc
797	#
798	# Compute yearly average considering calendar
799	# and set date of the mid year to 01/07 at 00:00
800	IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm -selvar,${var} ${file_out} ${file_out_YE}
801	# Extract all ancillary variables except $var, they will be appended after the cdo command
802	# Needed because cdo applies calculs on all variables
803	IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc
804	# This will remove the time axis because cdo rewrites severely with only considered useful variables
805	IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc
806	if [ $? -eq 0 ] ; then
807	# Now append all ancillary variables if previous cdo operator ok
808	IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE}
809	fi
810
811	# Put global history attribut
812	IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE}
813	#
814	eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE}
815	[ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE}
816	IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc
817	fi
818	#
819	IGCM_sys_Rm ${file_out}
820	ExitFlag=false
821	#
822	fi
823	#
824	done # for var in ${liste_var} ; do
825	IGCM_sys_Rm ${liste_file_tmp[*]}
826	done # for file in ${liste_file_brut} do
827	done # for comp in ${config_ListOfComponents[*]} ; do
828	# GO AHEAD IN DEEPEST LOOP
829	(( CURRENT_LOOP = CURRENT_LOOP + 1 ))
830	done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do
831	# FINISH
832
833	# DODS copy
834	for comp in ${config_ListOfComponents[*]} ; do
835	for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do
836	IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir}
837	[ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir}
838	done
839	done
840
841	export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone
842	export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG
843
844	listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG"
845	export listVarEnv
846
847	#D-
848	# --------------------------------------------------------------------
849	#D- Test if all was right
850	# --------------------------------------------------------------------
851	IGCM_debug_Verif_Exit_Post
852	# --------------------------------------------------------------------
853	#D- Submit MONITORING
854	# --------------------------------------------------------------------
855	if ( [ X${TsTask} = X2D ] \|\| [ X${TsTask} = X3D ] \|\| [ X${TsTask} = X ] ) ; then
856	Script_Post_Output=monitoring.${PeriodDateEnd}
857	IGCM_sys_QsubPost monitoring
858	fi
859
860	#D-
861	# --------------------------------------------------------------------
862	#D- Update the run.card
863	# --------------------------------------------------------------------
864	if [ ${StandAlone} != true ] ; then
865	# Put in run.card end period of time series
866	[ X"${DATE_FIN}" = X ] \|\| IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}"
867	# We have finish the job !
868	IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n"
869	fi
870
871	# Clean RUN_DIR_PATH (necessary for cesium)
872	IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
873
874	date

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