[Compatibility]
libIGCM=1.0

[UserChoices]
# The variable DefSuffix gives the suffix of the orchidee.def file to be used.
# By default the file orchidee.def_Choi will be selected.
# Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
# Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
DefSuffix=CWRR

VEGET_UPDATE=1Y


# Specify output level for output files
# Only the files sechiba_history.nc, sechiba_out_2.nc and sechiba_history_4dim.nc can be set here.
# output_level_filename=0     : lowest level writing only variables needed for the monitoring
# output_level_filename=12    : highest level which will output all variables
# output_level_filename=NONE  : deactivate the file
output_level_sechiba_history = 11
output_level_sechiba_out_2 = NONE
output_level_sechiba_history_4dim = 11

# Specify output frequency for each file [1y, 1mo, 1d, 10800s, 1ts]
# Settings using WriteFrequency in config.card is not longer used
output_freq_sechiba_history = 1mo
output_freq_sechiba_out_2 = 10800s
output_freq_sechiba_history_4dim = 1mo

# put to y if we want to calcul bvoc 
CHEMISTRY_BVOC=n

[InitialStateFiles]
List=	(${R_IN}/SRF/soils_param.nc,        . ), \
	(${R_IN}/SRF/reftemp.nc, . ), \
	(${R_IN}/SRF/routing.nc, . ), \
	(${R_IN}/SRF/SOIL/soil_bulk_and_ph.nc, .), \
        (${R_IN}/SRF/albedo/alb_bg_modisopt_2D_ESA_v2.nc, alb_bg.nc ), \
        (${R_IN}/SRF/cartepente2d_15min.nc, .)

[BoundaryFiles]
List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_${year}.nc					, PFTmap.nc) ,\
      (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_${year}.nc							, woodharvest.nc),\
      (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_${year}.nc				, nfert_pasture.nc) ,\
      (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_${year}.nc				, nfert_cropland.nc) ,\
      (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_${year}.nc				, nmanure_pasture.nc) ,\
      (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_${year}.nc				, nmanure_cropland.nc) ,\
      (/ccc/work/cont003/gen6328/p529vui/NDEP_MAUREEN/CCMI_ndep_nhx_${year}.nc						, ndep_nhx.nc), \
      (/ccc/work/cont003/gen6328/p529vui/NDEP_MAUREEN/CCMI_ndep_noy_${year}.nc						, ndep_noy.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/data_remap_cons/Glb_nonDairy_Cattle_CC2006_AD_grd_05NA.nc	, nonDairy_Cattle_distr.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/data_remap_cons/Glb_Dairy_Cattle_CC2006_AD_grd_05NA.nc	, Dairy_Cattle_distr.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/data_remap_cons/Glb_Pigs_CC2006_AD_grd_05NA.nc		, Pig_distr.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/data_remap_cons/Glb_Small_ruminants_CC2006_AD_grd_05NA.nc	, Small_ruminant_distr.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/data_remap_cons/Glb_Chicken_CC2006_AD_grd_05NA.nc		, Chicken_distr.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/non_dairy_weight.nc				, nonDairy_Cattle_weight.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/dairy_weight.nc					, Dairy_Cattle_weight.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/pig_weight.nc					, Pig_weight.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/small_rum_weight.nc				, Small_ruminant_weight.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/chicken_weight.nc				, Chicken_weight.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/non_dairy_man_prop.nc				, nonDairy_Cattle_man_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/dairy_man_prop.nc				, Dairy_Cattle_man_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/pig_man_prop.nc					, Pig_man_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/small_rum_man_prop.nc				, Small_ruminant_man_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/chicken_man_prop.nc				, Chicken_man_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/non_dairy_diet_prop_adjusted_preci.nc		, nonDairy_Cattle_diet_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/dairy_diet_prop_adjusted_preci.nc		, Dairy_Cattle_diet_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/pig_diet_prop.nc				, Pig_diet_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/small_rum_diet_prop_adjusted_preci.nc		, Small_ruminant_diet_prop.nc), \
      (/ccc/store/cont003/gen6328/beaudorm/Livestock_data/map_param_reg/chicken_diet_prop.nc				, Chicken_diet_prop.nc),\
      (/ccc/store/cont003/gen2201/beaudorm/HCAERS14414239ANT2-2005_2015_1M_inca_col_nh3_forORCH_0.5.nc			, Concatm_monthly.nc), \
      (/ccc/store/cont003/gen2201/beaudorm/HCAERS14414239ANT2-2005_2015_1Y_inca_col_nh3_forORCH_0.5.nc			, Concatm_yearly.nc)


ListNonDel= (${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc, bnf.nc) ,\
	    (${R_IN}/SRF/CO2/CO2_1700_2019_TRENDYv2020.txt, CO2.txt)

# to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def
#ListNonDel= (${R_IN}/SRF/chemistry/orchidee_fertilizer_1995.nc, .), \
#            (${R_IN}/SRF/chemistry/orchidee_bbg_clim.nc, .)

[SmoothFiles]
List= ()

[ParametersFiles]
List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
	(${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_input_orchidee.xml, .) ,\
	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
	(${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)

[RestartFiles]
List=	(sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc)

[OutputText]
List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc, file_def_input_orchidee.xml)

[OutputFiles]
List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
        (sechiba_history_4dim.nc,${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history_4dim.nc, NONE), \
        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE)

[Post_1M_sechiba_history]
Patches = ()
GatherWithInternal = (lon, lat, time_counter, Areas, Contfrac, time_centered, time_centered_bounds)
TimeSeriesVars2D = (nobiofrac, alb_nir, alb_vis, evap, fluxlat, fluxsens, netrad, qair, rain, runoff, snow, snownobio, snowf, frac_snow, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac, TWBR, riverflow, coastalflow, DelSoilMoist_daily, DelIntercept_daily, DelSWE_daily, delstock_routing, snowmelt, LAImean, transpir, evapnu)
ChunckJob2D = NONE
TimeSeriesVars3D = (lai, maxvegetfrac, vegetfrac, ptn, nee)
ChunckJob3D = NONE
Seasonal = ON

[Post_HF_sechiba_out_2]
Patches = ()
GatherWithInternal = (lon, lat, time_counter, Areas, Contfrac, time_centered, time_centered_bounds)
TimeSeriesVars2D = (mrsos, mrro)
ChunckJob2D = 50Y
TimeSeriesVars3D = (ptn)
ChunckJob3D = 10Y
Seasonal = OFF