Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/COMP/pisces.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/COMP/pisces.card	(revision 5535)
@@ -3,5 +3,6 @@
 
 [UserChoices]
-age=y
+pis=y
+age=n
 cfc11=n
 cfc12=n
@@ -48,5 +49,5 @@
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                , namelist_pisces_cfg        ), \
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_trc_cfg                   , namelist_trc_cfg           ), \
-        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces.xml                , file_def_nemo-pisces.xml   )
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
 
 
@@ -65,6 +66,6 @@
         (${config_UserChoices_JobName}_1y_CFC12.nc         , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_CFC12.nc     , NONE ) , \
         (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \
-        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \
-        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \
+        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , NONE   ) , \
+        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , NONE   ) , \
         (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_D}/${PREFIX}_1D_bioscalar.nc , NONE)
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/COMP/si3.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/COMP/si3.card	(revision 5535)
@@ -20,5 +20,5 @@
 List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
         (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
-        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_ice_cfg, namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
         (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/config.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/clim/config.card	(revision 5535)
@@ -11,5 +11,5 @@
 #============================
 #-- (<8 chars MAX for JobName)
-JobName=eOR1Si3P-CLIM-CORE-v403-01
+JobName=eOR1Si3Pv4-CLIM-CORE-01
 #----- Short Name of Experiment
 ExperimentName=clim
@@ -56,5 +56,5 @@
 Name=nemo
 #D- For each component, Real name of executable
-OCE= (opa_online_${OptMode}.exe, nemo, 590MPI)
+OCE= (opa_online_${OptMode}.exe, nemo, 586MPI)
 ICE= ("", "", "")
 MBG= ("", "", "")
@@ -73,5 +73,5 @@
 RestartJobName=NO1-T17
 #D- Path Server Group Login
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 
 #========================================================================
@@ -84,5 +84,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -97,5 +97,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -110,5 +110,5 @@
 # Define restart simulation name
 RestartJobName=eOR1L3P-V1
-RestartPath=${ARCHIVE}/../../gzi/rgzi002/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 # Old component name for restart (if empty, use new name)
 OldName=
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/COMP/pisces.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/COMP/pisces.card	(revision 5535)
@@ -3,5 +3,6 @@
 
 [UserChoices]
-age=y
+pis=y
+age=n
 cfc11=n
 cfc12=n
@@ -47,5 +48,5 @@
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                , namelist_pisces_cfg        ), \
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_trc_cfg                   , namelist_trc_cfg           ), \
-        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces.xml                , file_def_nemo-pisces.xml   )
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
 
 
@@ -64,6 +65,6 @@
         (${config_UserChoices_JobName}_1y_CFC12.nc         , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_CFC12.nc     , NONE ) , \
         (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \
-        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \
-        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \
+        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , NONE   ) , \
+        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , NONE   ) , \
         (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_D}/${PREFIX}_1D_bioscalar.nc , NONE)
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/COMP/si3.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/COMP/si3.card	(revision 5535)
@@ -20,5 +20,5 @@
 List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
         (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
-        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_ice_cfg, namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
         (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/config.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/core/ia/config.card	(revision 5535)
@@ -11,5 +11,5 @@
 #============================
 #-- (<8 chars MAX for JobName)
-JobName=eOR1Si3P-IA-CORE-v403-01
+JobName=eOR1Si3Pv4-IA-CORE-01
 #----- Short Name of Experiment
 ExperimentName=iann
@@ -56,5 +56,5 @@
 Name=nemo
 #D- For each component, Real name of executable
-OCE= (opa_online_${OptMode}.exe, nemo, 590MPI)
+OCE= (opa_online_${OptMode}.exe, nemo, 586MPI)
 ICE= ("", "", "")
 MBG= ("", "", "")
@@ -73,5 +73,5 @@
 RestartJobName=NO1-T17
 #D- Path Server Group Login
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 
 #========================================================================
@@ -84,5 +84,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -97,5 +97,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -110,5 +110,5 @@
 # Define restart simulation name
 RestartJobName=eOR1L3P-V1
-RestartPath=${ARCHIVE}/../../gzi/rgzi002/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 # Old component name for restart (if empty, use new name)
 OldName=
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/COMP/pisces.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/COMP/pisces.card	(revision 5535)
@@ -3,5 +3,6 @@
 
 [UserChoices]
-age=y
+pis=y
+age=n
 cfc11=n
 cfc12=n
@@ -47,5 +48,5 @@
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                , namelist_pisces_cfg        ), \
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_trc_cfg                   , namelist_trc_cfg           ), \
-        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces.xml                , file_def_nemo-pisces.xml   )
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
 
 
@@ -64,6 +65,6 @@
         (${config_UserChoices_JobName}_1y_CFC12.nc         , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_CFC12.nc     , NONE ) , \
         (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \
-        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \
-        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \
+        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , NONE   ) , \
+        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , NONE   ) , \
         (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_D}/${PREFIX}_1D_bioscalar.nc , NONE)
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/COMP/si3.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/COMP/si3.card	(revision 5535)
@@ -3,4 +3,5 @@
 
 [UserChoices]
+Init_From_File=0
 OutputLevel=10
 
@@ -19,5 +20,5 @@
 List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
         (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
-        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_ice_cfg, namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
         (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/config.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_PISCES/jra/ia/config.card	(revision 5535)
@@ -11,5 +11,5 @@
 #============================
 #-- (<8 chars MAX for JobName)
-JobName=eOR1Si3P-IA-JRA-v403-01
+JobName=eOR1Si3Pv4-IA-JRA-01
 #----- Short Name of Experiment
 ExperimentName=iann
@@ -56,5 +56,5 @@
 Name=nemo
 #D- For each component, Real name of executable
-OCE= (opa_online_${OptMode}.exe, nemo, 590MPI)
+OCE= (opa_online_${OptMode}.exe, nemo, 586MPI)
 ICE= ("", "", "")
 MBG= ("", "", "")
@@ -73,5 +73,5 @@
 RestartJobName=NO1-T17
 #D- Path Server Group Login
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 
 #========================================================================
@@ -84,5 +84,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -97,5 +97,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -110,5 +110,5 @@
 # Define restart simulation name
 RestartJobName=eOR1L3P-V1
-RestartPath=${ARCHIVE}/../../gzi/rgzi002/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 # Old component name for restart (if empty, use new name)
 OldName=
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/opa9.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/opa9.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/opa9.card	(revision 5535)
@@ -0,0 +1,166 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+#==============================================================
+ORCA_version=eORCA1.4
+mesh_mask=n
+OutputLevel=10
+forcing=core
+R_FORCING=${R_IN}/OCE/NEMO/FORCINGS/COREII
+#==============================================================
+
+[InitialStateFiles]
+List=  (${SUBMIT_DIR}/PARAM/NAMELIST/EMPave_old.dat, EMPave_old.dat)
+
+[BoundaryFiles]
+List=  ()
+
+
+ListNonDel= (${opa9_UserChoices_R_FORCING}/u_10.15JUNE2009_fill.nc            , u_10_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/v_10.15JUNE2009_fill.nc            , v_10_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/t_10.15JUNE2009_fill.nc            , t_10_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/q_10.15JUNE2009_fill.nc            , q_10_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/ncar_rad.15JUNE2009_fill.nc        , ncar_rad_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/ncar_rad.15JUNE2009_fill.nc        , ncar_rad_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/ncar_precip.15JUNE2009_fill.nc     , ncar_precip_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/ncar_precip.15JUNE2009_fill.nc     , ncar_precip_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/slp.15JUNE2009_fill.nc             , slp_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bilinear.nc, weights_bilinear.nc), \
+            (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bicubic.nc , weights_bicubic.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates.nc, coordinates.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates_xios.nc, coordinates_xios.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_domain_cfg.nc, domain_cfg.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_maskMFO.nc, maskMFO.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_resto.nc, resto.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_subbasins.nc                        , subbasins.nc    ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_bot.nc, mixing_power_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_pyc.nc, mixing_power_pyc.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_cri.nc, mixing_power_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_bot.nc, decay_scale_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_cri.nc, decay_scale_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_sali_ref_clim_monthly.nc, sali_ref_clim_monthly.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_eddy_viscosity_3D.nc, eddy_viscosity_3D.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/conservative_temperature_WOA13_decav_Reg1L75_clim.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/absolute_salinity_WOA13_decav_Reg1L75_clim.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sss_absolute_PHC2_salx_2004_08_03_clim_eORCA1.nc, sss_absolute_salinity.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/Goutorbe_ghflux.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/runoff-icb_DaiTrenberth_Depoorter_eORCA1.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_WOA13d1_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_3D_WOA13d1_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_reg05_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_Goutorbe1_2_eorca1_bilinear.nc, .)
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ref           , namelist_ref        ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/domain_def_nemo.xml    , domain_def_nemo.xml ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/axis_def_nemo.xml      , axis_def_nemo.xml   ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/grid_def_nemo.xml      , grid_def_nemo.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-oce.xml , field_def_nemo-oce.xml  ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_${opa9_UserChoices_forcing}_${exptype}_cfg, namelist_cfg), \
+        (${SUBMIT_DIR}/PARAM/XML/context_nemo.xml                   , context_nemo.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/iodef.xml                          , iodef.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-oce.xml              , file_def_nemo-oce.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart.nc,  restart.nc, restart.nc), \
+        (EMPave.dat,  EMPave.dat, EMPave_old.dat)
+
+[OutputText]
+List=   (ocean.output, run.stat, STRAIT.dat, namelist_ref, namelist_cfg )
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1y_scalar.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_scalar.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_T.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_U.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_V.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_W.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_2D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_3D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_W.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_W.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_trdtra.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_scalar.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_scalar.nc     , Post_1M_scalar),\
+        (${config_UserChoices_JobName}_1m_grid_T.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_T.nc     , Post_1M_grid_T),\
+        (${config_UserChoices_JobName}_1m_grid_U.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_U.nc     , Post_1M_grid_U),\
+        (${config_UserChoices_JobName}_1m_grid_V.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_V.nc     , Post_1M_grid_V),\
+        (${config_UserChoices_JobName}_1m_grid_W.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_W.nc     , Post_1M_grid_W),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_2D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_2D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_3D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_3D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_W.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_W.nc   , Post_1M_diaptr_W),\
+        (${config_UserChoices_JobName}_1m_strait_oce.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_strait_oce.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_trdtra.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_V.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_trdtra.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_SBC.nc       , ${R_OUT_OCE_O_D}/${PREFIX}_1D_SBC.nc        , NONE          ),\
+        (${config_UserChoices_JobName}_1d_scalar.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_scalar.nc     , NONE          ),\
+        (mesh_mask.nc     , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc                , NONE          ),\
+        (runoffs.nc       , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_runoffs.nc                  , NONE          ),\
+        (damping.coeff.nc , ${R_OUT_OCE_O_D}/${PREFIX}_damping.coeff.nc                              , NONE          ),\
+        (output.abort.nc  , ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc                                 , NONE          ),\
+        (output.init.nc   , ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc,NONE    )
+
+# Monthly analysis
+
+[Post_1M_scalar]
+Patches = ()
+GatherWithInternal = (time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (scmastot, scvoltot, scsshtot, scsshste, scsshtst, sctemtot, scsaltot, ibgheat_tot, sbgheat_tot)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_grid_T]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (zos, tos, sos, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3t, thetao, so)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_U]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauuo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3u, uocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_V]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauvo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3v, vocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_W]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ( )
+ChunckJob2D = NONE
+TimeSeriesVars3D = ( )
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_1M_diaptr_W]
+Patches = ()
+GatherWithInternal = (nav_lat, depthw, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (msftyz_glo, msftyz_atl, msftyz_ind)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/pisces.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/pisces.card	(revision 5535)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+pis=n
+age=y
+cfc11=n
+cfc12=n
+Offline_Mode=n
+OutputLevel=10
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List=       ()
+
+ListNonDel= ()
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_top_ref            , namelist_top_ref), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-pisces.xml   , field_def_nemo-pisces.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-innerttrc.xml, field_def_nemo-innerttrc.xml), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_top_cfg                   , namelist_top_cfg           ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_trc.nc,  restart_trc.nc, restart_trc.nc)
+
+[OutputText]
+List=   (namelist_top_ref, namelist_top_cfg, tracer.stat)
+
+
+[OutputFiles]
+List= (${config_UserChoices_JobName}_1y_Age.nc           , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_Age.nc       , NONE )
+
+
+[Post_1Y_inerttrc]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = OFF
+TimeSeriesVars3D = (Age)
+ChunckJob3D = NONE
+Seasonal=OFF
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/si3.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/si3.card	(revision 5535)
@@ -0,0 +1,43 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+Init_From_File=0
+OutputLevel=10
+
+
+[InitialStateFiles]
+List=	()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_ice.nc, restart_icemod.nc, restart_ice_in.nc)
+
+[OutputText]
+List=   (namelist_ice)
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1m_icemod.nc     , ${R_OUT_ICE_O_M}/${PREFIX}_1M_icemod.nc    , Post_1M_icemod ),\
+        (${config_UserChoices_JobName}_1m_strait_ice.nc , ${R_OUT_ICE_O_M}/${PREFIX}_1M_strait_ice.nc, NONE           )
+
+[Post_1M_icemod]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (snthic, sithic, sivolu, snvolu, siconc, sisali, sitemp, sistem, siheco, snheco, sivelo, sishea, sfxice)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/xios.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/xios.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/COMP/xios.card	(revision 5535)
@@ -0,0 +1,26 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=   ()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+List=   (NONE)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=   ()
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/config.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/clim/config.card	(revision 5535)
@@ -0,0 +1,155 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+# This is config.card file for NEMO ORCA1_LIM3_PISCES configuration
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=eOR1Si3Tv4-CLIM-CORE-01
+#----- Short Name of Experiment
+ExperimentName=clim
+#----- DEVT TEST PROD
+SpaceName=DEVT
+LongName="ORCA1_SI3_TRC NEMO configuration"
+TagName=NEMO
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=ORCA1_ICE_TRC/core/clim
+#============================
+#-- leap, noleap, 360d
+CalendarType=noleap
+#============================
+#-- Begin and end of Job
+#-- "YYYY-MM-DD"
+DateBegin=1948-01-01
+DateEnd=2009-12-31
+#============================
+#-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+#============================
+#-- Source following file with module settings, only if it exists
+EnvFile=${SUBMIT_DIR}/../ARCH/arch.env
+#============================
+#-- ResolAtm indicates the atmospheric resolution
+#   This variable is used in the executable name 
+ResolOce=ORCA1
+#============================
+# OptMode indicates the optimization mode choosen during compilation
+# This variable is used in the executable name
+OptMode=prod
+#
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+OCE= (opa9, NEMO_v4)
+ICE= (si3,  SI3v1)
+MBG= (pisces, PISCESv2)
+IOS= (xios, XIOS)
+#========================================================================
+#D-- Executable -
+[Executable]
+Name=nemo
+#D- For each component, Real name of executable
+OCE= (opa_online_${OptMode}.exe, nemo, 586MPI)
+ICE= ("", "", "")
+MBG= ("", "", "")
+IOS= (xios_server_${OptMode}.exe, xios.x, 1MPI)
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=0094-12-31
+#D- Define restart simulation name
+RestartJobName=NO1-T17
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/ORCA1clim
+
+#========================================================================
+#D-- OCE -
+[OCE]
+WriteFrequency="5D 1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- ICE -
+[ICE]
+WriteFrequency="1M"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- MBG -
+[MBG]
+WriteFrequency="1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=0169-12-31
+# Define restart simulation name
+RestartJobName=eOR1L3P-V1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/ORCA1clim
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- Post -
+[Post]
+ParserXIOS=FALSE
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=NONE
+#D- Do we pack restart and debug txt files, this flag determines
+#D- frequency of pack submission (use NONE for DRYRUN=3)
+PackFrequency=1Y
+#D- To have only the last period in RESTART/*.tar : save 90% of volume.
+#D- TRUE to be effective (nothing by default)
+LightRestartPack=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you dont want)
+TimeSeriesFrequency=1Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you dont want)
+SeasonalFrequency=NONE
+#D- If you want to produce compute PCMDI metrics from seasonal average
+#D- Set FALSE to deactivate the metrics computation.
+MetricsPCMDI=FALSE
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulations years
+SeasonalFrequencyOffset=0
+
+#========================================================================
+#D-- IOS -
+[IOS]
+WriteFrequency=""
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart= n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=1899-12-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/IPSLCM5A/DEVT/piControl
+# Old component name for restart (if empty, use new name)
+OldName=
+#========================================================================
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/opa9.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/opa9.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/opa9.card	(revision 5535)
@@ -0,0 +1,160 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+#==============================================================
+ORCA_version=eORCA1.4
+mesh_mask=n
+OutputLevel=10
+forcing=core
+R_FORCING=${R_IN}/OCE/NEMO/FORCINGS/COREII
+ListForcing=(u_10_CORE2_fill v_10_CORE2_fill t_10_CORE2_fill q_10_CORE2_fill ncar_rad_CORE2_fill ncar_precip_CORE2_fill slp_CORE2_fill)
+YearForcingInit=1948
+YearForcingEnd=2009
+#==============================================================
+
+[InitialStateFiles]
+List=   (${SUBMIT_DIR}/PARAM/NAMELIST/EMPave_old.dat, EMPave_old.dat)
+
+[BoundaryFiles]
+List=  ()
+
+
+ListNonDel= (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bilinear.nc, weights_bilinear.nc), \
+            (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bicubic.nc , weights_bicubic.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates.nc, coordinates.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates_xios.nc, coordinates_xios.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_domain_cfg.nc, domain_cfg.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_maskMFO.nc, maskMFO.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_resto.nc, resto.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_subbasins.nc                        , subbasins.nc    ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_bot.nc, mixing_power_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_pyc.nc, mixing_power_pyc.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_cri.nc, mixing_power_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_bot.nc, decay_scale_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_cri.nc, decay_scale_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_sali_ref_clim_monthly.nc, sali_ref_clim_monthly.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_eddy_viscosity_3D.nc, eddy_viscosity_3D.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/conservative_temperature_WOA13_decav_Reg1L75_clim.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/absolute_salinity_WOA13_decav_Reg1L75_clim.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sss_absolute_PHC2_salx_2004_08_03_clim_eORCA1.nc, sss_absolute_salinity.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/Goutorbe_ghflux.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/runoff-icb_DaiTrenberth_Depoorter_eORCA1.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_WOA13d1_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_3D_WOA13d1_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_reg05_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_Goutorbe1_2_eorca1_bilinear.nc, .)
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ref           , namelist_ref        ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/domain_def_nemo.xml    , domain_def_nemo.xml ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/axis_def_nemo.xml      , axis_def_nemo.xml   ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/grid_def_nemo.xml      , grid_def_nemo.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-oce.xml , field_def_nemo-oce.xml  ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_${opa9_UserChoices_forcing}_${exptype}_cfg, namelist_cfg), \
+        (${SUBMIT_DIR}/PARAM/XML/context_nemo.xml              , context_nemo.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/iodef.xml                     , iodef.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-oce.xml         , file_def_nemo-oce.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart.nc,  restart.nc, restart.nc), \
+        (EMPave.dat,  EMPave.dat, EMPave_old.dat)
+
+[OutputText]
+List=   (ocean.output, run.stat, STRAIT.dat, namelist_ref, namelist_cfg )
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1y_scalar.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_scalar.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_T.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_U.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_V.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_W.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_2D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_3D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_W.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_W.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_trdtra.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_scalar.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_scalar.nc     , Post_1M_scalar),\
+        (${config_UserChoices_JobName}_1m_grid_T.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_T.nc     , Post_1M_grid_T),\
+        (${config_UserChoices_JobName}_1m_grid_U.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_U.nc     , Post_1M_grid_U),\
+        (${config_UserChoices_JobName}_1m_grid_V.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_V.nc     , Post_1M_grid_V),\
+        (${config_UserChoices_JobName}_1m_grid_W.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_W.nc     , Post_1M_grid_W),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_2D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_2D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_3D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_3D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_W.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_W.nc   , Post_1M_diaptr_W),\
+        (${config_UserChoices_JobName}_1m_strait_oce.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_strait_oce.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_trdtra.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_V.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_trdtra.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_SBC.nc       , ${R_OUT_OCE_O_D}/${PREFIX}_1D_SBC.nc        , NONE          ),\
+        (${config_UserChoices_JobName}_1d_scalar.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_scalar.nc     , NONE          ),\
+        (mesh_mask.nc     , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc                , NONE          ),\
+        (runoffs.nc       , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_runoffs.nc                  , NONE          ),\
+        (damping.coeff.nc , ${R_OUT_OCE_O_D}/${PREFIX}_damping.coeff.nc                              , NONE          ),\
+        (output.abort.nc  , ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc                                 , NONE          ),\
+        (output.init.nc   , ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc,NONE    )
+
+# Monthly analysis
+
+[Post_1M_scalar]
+Patches = ()
+GatherWithInternal = (time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (scmastot, scvoltot, scsshtot, scsshste, scsshtst, sctemtot, scsaltot, ibgheat_tot, sbgheat_tot)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_grid_T]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (zos, tos, sos, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3t, thetao, so)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_U]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauuo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3u, uocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_V]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauvo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3v, vocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_W]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ( )
+ChunckJob2D = NONE
+TimeSeriesVars3D = ( )
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_1M_diaptr_W]
+Patches = ()
+GatherWithInternal = (nav_lat, depthw, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (msftyz_glo, msftyz_atl, msftyz_ind)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/pisces.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/pisces.card	(revision 5535)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+pis=n
+age=y
+cfc11=n
+cfc12=n
+Offline_Mode=n
+OutputLevel=10
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List=       ()
+
+ListNonDel= ()
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_top_ref            , namelist_top_ref), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-pisces.xml   , field_def_nemo-pisces.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-innerttrc.xml, field_def_nemo-innerttrc.xml), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_top_cfg                   , namelist_top_cfg           ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_trc.nc,  restart_trc.nc, restart_trc.nc)
+
+[OutputText]
+List=   (namelist_top_ref, namelist_top_cfg, tracer.stat)
+
+
+[OutputFiles]
+List= (${config_UserChoices_JobName}_1y_Age.nc           , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_Age.nc       , NONE )
+
+
+[Post_1Y_inerttrc]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = OFF
+TimeSeriesVars3D = (Age)
+ChunckJob3D = NONE
+Seasonal=OFF
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/si3.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/si3.card	(revision 5535)
@@ -0,0 +1,43 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+Init_From_File=0
+OutputLevel=10
+
+
+[InitialStateFiles]
+List=	()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_ice.nc, restart_icemod.nc, restart_ice_in.nc)
+
+[OutputText]
+List=   (namelist_ice)
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1m_icemod.nc     , ${R_OUT_ICE_O_M}/${PREFIX}_1M_icemod.nc    , Post_1M_icemod ),\
+        (${config_UserChoices_JobName}_1m_strait_ice.nc , ${R_OUT_ICE_O_M}/${PREFIX}_1M_strait_ice.nc, NONE           )
+
+[Post_1M_icemod]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (snthic, sithic, sivolu, snvolu, siconc, sisali, sitemp, sistem, siheco, snheco, sivelo, sishea, sfxice)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/xios.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/xios.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/COMP/xios.card	(revision 5535)
@@ -0,0 +1,26 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=   ()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+List=   (NONE)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=   ()
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/config.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/core/ia/config.card	(revision 5535)
@@ -0,0 +1,155 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+# This is config.card file for NEMO ORCA1_LIM3_PISCES configuration
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=eOR1Si3Tv4-IA-CORE-01
+#----- Short Name of Experiment
+ExperimentName=iann
+#----- DEVT TEST PROD
+SpaceName=DEVT
+LongName="ORCA1_SI3_AGE NEMO configuration"
+TagName=NEMO
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=ORCA1_ICE_TRC/core/ia
+#============================
+#-- leap, noleap, 360d
+CalendarType=noleap
+#============================
+#-- Begin and end of Job
+#-- "YYYY-MM-DD"
+DateBegin=1948-01-01
+DateEnd=2009-12-31
+#============================
+#-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+#============================
+#-- Source following file with module settings, only if it exists
+EnvFile=${SUBMIT_DIR}/../ARCH/arch.env
+#============================
+#-- ResolAtm indicates the atmospheric resolution
+#   This variable is used in the executable name 
+ResolOce=ORCA1
+#============================
+# OptMode indicates the optimization mode choosen during compilation
+# This variable is used in the executable name
+OptMode=prod
+#
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+OCE= (opa9, NEMO_v4)
+ICE= (si3,  SI3v1)
+MBG= (pisces, PISCESv2)
+IOS= (xios, XIOS)
+#========================================================================
+#D-- Executable -
+[Executable]
+Name=nemo
+#D- For each component, Real name of executable
+OCE= (opa_online_${OptMode}.exe, nemo, 586MPI)
+ICE= ("", "", "")
+MBG= ("", "", "")
+IOS= (xios_server_${OptMode}.exe, xios.x, 1MPI)
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=0094-12-31
+#D- Define restart simulation name
+RestartJobName=NO1-T17
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/ORCA1clim
+
+#========================================================================
+#D-- OCE -
+[OCE]
+WriteFrequency="5D 1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- ICE -
+[ICE]
+WriteFrequency="1M"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- MBG -
+[MBG]
+WriteFrequency="1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=0169-12-31
+# Define restart simulation name
+RestartJobName=eOR1L3P-V1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/ORCA1clim
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- Post -
+[Post]
+ParserXIOS=FALSE
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=NONE
+#D- Do we pack restart and debug txt files, this flag determines
+#D- frequency of pack submission (use NONE for DRYRUN=3)
+PackFrequency=1Y
+#D- To have only the last period in RESTART/*.tar : save 90% of volume.
+#D- TRUE to be effective (nothing by default)
+LightRestartPack=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you dont want)
+TimeSeriesFrequency=1Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you dont want)
+SeasonalFrequency=NONE
+#D- If you want to produce compute PCMDI metrics from seasonal average
+#D- Set FALSE to deactivate the metrics computation.
+MetricsPCMDI=FALSE
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulations years
+SeasonalFrequencyOffset=0
+
+#========================================================================
+#D-- IOS -
+[IOS]
+WriteFrequency=""
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart= n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=1899-12-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/IPSLCM5A/DEVT/piControl
+# Old component name for restart (if empty, use new name)
+OldName=
+#========================================================================
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/opa9.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/opa9.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/opa9.card	(revision 5535)
@@ -0,0 +1,160 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+#==============================================================
+ORCA_version=eORCA1.4
+mesh_mask=n
+OutputLevel=10
+forcing=jra
+R_FORCING=${R_IN}/OCE/NEMO/FORCINGS/MRI-JRA55-do-1-4-0
+ListForcing=(u_10 v_10 t_10 q_10 rsds rlds rain snow slp)
+YearForcingInit=1958
+YearForcingEnd=2018
+#==============================================================
+
+[InitialStateFiles]
+List=   (${SUBMIT_DIR}/PARAM/NAMELIST/EMPave_old.dat, EMPave_old.dat)
+
+[BoundaryFiles]
+List=  ()
+
+
+ListNonDel= (${opa9_UserChoices_R_FORCING}/weights_JRA55_eORCA1_bilinear.nc, weights_bilinear.nc), \
+            (${opa9_UserChoices_R_FORCING}/weights_JRA55_eORCA1_bicubic.nc , weights_bicubic.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates.nc, coordinates.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates_xios.nc, coordinates_xios.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_domain_cfg.nc, domain_cfg.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_maskMFO.nc, maskMFO.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_resto.nc, resto.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_subbasins.nc                        , subbasins.nc    ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_bot.nc, mixing_power_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_pyc.nc, mixing_power_pyc.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_cri.nc, mixing_power_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_bot.nc, decay_scale_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_cri.nc, decay_scale_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_sali_ref_clim_monthly.nc, sali_ref_clim_monthly.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_eddy_viscosity_3D.nc, eddy_viscosity_3D.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/conservative_temperature_WOA13_decav_Reg1L75_clim.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/absolute_salinity_WOA13_decav_Reg1L75_clim.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sss_absolute_PHC2_salx_2004_08_03_clim_eORCA1.nc, sss_absolute_salinity.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/Goutorbe_ghflux.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/runoff-icb_DaiTrenberth_Depoorter_eORCA1.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc, .),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_WOA13d1_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_3D_WOA13d1_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_reg05_2_eorca1_bilinear.nc, .), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/weights_Goutorbe1_2_eorca1_bilinear.nc, .)
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ref           , namelist_ref        ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/domain_def_nemo.xml    , domain_def_nemo.xml ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/axis_def_nemo.xml      , axis_def_nemo.xml   ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/grid_def_nemo.xml      , grid_def_nemo.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-oce.xml , field_def_nemo-oce.xml  ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_${opa9_UserChoices_forcing}_${exptype}_cfg, namelist_cfg), \
+        (${SUBMIT_DIR}/PARAM/XML/context_nemo.xml                   , context_nemo.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/iodef.xml                          , iodef.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-oce.xml              , file_def_nemo-oce.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart.nc,  restart.nc, restart.nc), \
+        (EMPave.dat,  EMPave.dat, EMPave_old.dat)
+
+[OutputText]
+List=   (ocean.output, run.stat, STRAIT.dat, namelist_ref, namelist_cfg )
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1y_scalar.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_scalar.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_T.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_U.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_V.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_W.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_2D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_3D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_W.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_W.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_trdtra.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_scalar.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_scalar.nc     , Post_1M_scalar),\
+        (${config_UserChoices_JobName}_1m_grid_T.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_T.nc     , Post_1M_grid_T),\
+        (${config_UserChoices_JobName}_1m_grid_U.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_U.nc     , Post_1M_grid_U),\
+        (${config_UserChoices_JobName}_1m_grid_V.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_V.nc     , Post_1M_grid_V),\
+        (${config_UserChoices_JobName}_1m_grid_W.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_W.nc     , Post_1M_grid_W),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_2D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_2D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_3D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_3D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_W.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_W.nc   , Post_1M_diaptr_W),\
+        (${config_UserChoices_JobName}_1m_strait_oce.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_strait_oce.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_trdtra.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_V.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_trdtra.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_SBC.nc       , ${R_OUT_OCE_O_D}/${PREFIX}_1D_SBC.nc        , NONE          ),\
+        (${config_UserChoices_JobName}_1d_scalar.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_scalar.nc     , NONE          ),\
+        (mesh_mask.nc     , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc                , NONE          ),\
+        (runoffs.nc       , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_runoffs.nc                  , NONE          ),\
+        (damping.coeff.nc , ${R_OUT_OCE_O_D}/${PREFIX}_damping.coeff.nc                              , NONE          ),\
+        (output.abort.nc  , ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc                                 , NONE          ),\
+        (output.init.nc   , ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc,NONE    )
+
+# Monthly analysis
+
+[Post_1M_scalar]
+Patches = ()
+GatherWithInternal = (time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (scmastot, scvoltot, scsshtot, scsshste, scsshtst, sctemtot, scsaltot, ibgheat_tot, sbgheat_tot)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_grid_T]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (zos, tos, sos, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3t, thetao, so)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_U]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauuo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3u, uocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_V]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauvo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3v, vocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_W]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ( )
+ChunckJob2D = NONE
+TimeSeriesVars3D = ( )
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_1M_diaptr_W]
+Patches = ()
+GatherWithInternal = (nav_lat, depthw, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (msftyz_glo, msftyz_atl, msftyz_ind)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/pisces.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/pisces.card	(revision 5535)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+pis=n
+age=y
+cfc11=n
+cfc12=n
+Offline_Mode=n
+OutputLevel=10
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List=       ()
+
+ListNonDel= ()
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_top_ref            , namelist_top_ref), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-pisces.xml   , field_def_nemo-pisces.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-innerttrc.xml, field_def_nemo-innerttrc.xml), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_top_cfg                   , namelist_top_cfg           ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_trc.nc,  restart_trc.nc, restart_trc.nc)
+
+[OutputText]
+List=   (namelist_top_ref, namelist_top_cfg, tracer.stat)
+
+
+[OutputFiles]
+List= (${config_UserChoices_JobName}_1y_Age.nc           , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_Age.nc       , NONE )
+
+
+[Post_1Y_inerttrc]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = OFF
+TimeSeriesVars3D = (Age)
+ChunckJob3D = NONE
+Seasonal=OFF
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/si3.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/si3.card	(revision 5535)
@@ -0,0 +1,43 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+Init_From_File=0
+OutputLevel=10
+
+
+[InitialStateFiles]
+List=	()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_ice.nc, restart_icemod.nc, restart_ice_in.nc)
+
+[OutputText]
+List=   (namelist_ice)
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1m_icemod.nc     , ${R_OUT_ICE_O_M}/${PREFIX}_1M_icemod.nc    , Post_1M_icemod ),\
+        (${config_UserChoices_JobName}_1m_strait_ice.nc , ${R_OUT_ICE_O_M}/${PREFIX}_1M_strait_ice.nc, NONE           )
+
+[Post_1M_icemod]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (snthic, sithic, sivolu, snvolu, siconc, sisali, sitemp, sistem, siheco, snheco, sivelo, sishea, sfxice)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/xios.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/xios.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/COMP/xios.card	(revision 5535)
@@ -0,0 +1,26 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=   ()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+List=   (NONE)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=   ()
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/config.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA1_ICE_TRC/jra/ia/config.card	(revision 5535)
@@ -0,0 +1,155 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+# This is config.card file for NEMO ORCA1_LIM3_PISCES configuration
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=eOR1Si3Tv4-IA-JRA-01
+#----- Short Name of Experiment
+ExperimentName=iann
+#----- DEVT TEST PROD
+SpaceName=DEVT
+LongName="ORCA1_SI3_TRC NEMO configuration"
+TagName=NEMO
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=ORCA1_ICE_TRC/jra/ia
+#============================
+#-- leap, noleap, 360d
+CalendarType=noleap
+#============================
+#-- Begin and end of Job
+#-- "YYYY-MM-DD"
+DateBegin=1958-01-01
+DateEnd=2018-12-31
+#============================
+#-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+#============================
+#-- Source following file with module settings, only if it exists
+EnvFile=${SUBMIT_DIR}/../ARCH/arch.env
+#============================
+#-- ResolAtm indicates the atmospheric resolution
+#   This variable is used in the executable name 
+ResolOce=ORCA1
+#============================
+# OptMode indicates the optimization mode choosen during compilation
+# This variable is used in the executable name
+OptMode=prod
+#
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+OCE= (opa9, NEMO_v4)
+ICE= (si3,  SI3v1)
+MBG= (pisces, PISCESv2)
+IOS= (xios, XIOS)
+#========================================================================
+#D-- Executable -
+[Executable]
+Name=nemo
+#D- For each component, Real name of executable
+OCE= (opa_online_${OptMode}.exe, nemo, 586MPI)
+ICE= ("", "", "")
+MBG= ("", "", "")
+IOS= (xios_server_${OptMode}.exe, xios.x, 1MPI)
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=0094-12-31
+#D- Define restart simulation name
+RestartJobName=NO1-T17
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/ORCA1clim
+
+#========================================================================
+#D-- OCE -
+[OCE]
+WriteFrequency="5D 1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- ICE -
+[ICE]
+WriteFrequency="1M"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- MBG -
+[MBG]
+WriteFrequency="1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=0169-12-31
+# Define restart simulation name
+RestartJobName=eOR1L3P-V1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/ORCA1clim
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- Post -
+[Post]
+ParserXIOS=FALSE
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=NONE
+#D- Do we pack restart and debug txt files, this flag determines
+#D- frequency of pack submission (use NONE for DRYRUN=3)
+PackFrequency=1Y
+#D- To have only the last period in RESTART/*.tar : save 90% of volume.
+#D- TRUE to be effective (nothing by default)
+LightRestartPack=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you dont want)
+TimeSeriesFrequency=1Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you dont want)
+SeasonalFrequency=NONE
+#D- If you want to produce compute PCMDI metrics from seasonal average
+#D- Set FALSE to deactivate the metrics computation.
+MetricsPCMDI=FALSE
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulations years
+SeasonalFrequencyOffset=0
+
+#========================================================================
+#D-- IOS -
+[IOS]
+WriteFrequency=""
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart= n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=1899-12-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/IPSLCM5A/DEVT/piControl
+# Old component name for restart (if empty, use new name)
+OldName=
+#========================================================================
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/COMP/pisces.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/COMP/pisces.card	(revision 5535)
@@ -3,5 +3,6 @@
 
 [UserChoices]
-age=y
+pis=y
+age=n
 cfc11=n
 cfc12=n
@@ -48,5 +49,5 @@
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                , namelist_pisces_cfg        ), \
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_trc_cfg                   , namelist_trc_cfg           ), \
-        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces.xml                , file_def_nemo-pisces.xml   )
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
 
 
@@ -65,8 +66,7 @@
         (${config_UserChoices_JobName}_1y_CFC12.nc         , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_CFC12.nc     , NONE ) , \
         (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \
-        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \
-        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \
+        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , NONE   ) , \
+        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , NONE   ) , \
         (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_D}/${PREFIX}_1D_bioscalar.nc , NONE)
-
 
 [Post_1D_bioscalar]
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/COMP/si3.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/COMP/si3.card	(revision 5535)
@@ -20,5 +20,5 @@
 List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
         (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
-        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_ice_cfg, namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
         (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/config.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/clim/config.card	(revision 5535)
@@ -11,10 +11,10 @@
 #============================
 #-- (<8 chars MAX for JobName)
-JobName=OR2Si3P-CLIM-CORE-v403-01
+JobName=OR2Si3Pv4-CLIM-CORE-01
 #----- Short Name of Experiment
 ExperimentName=clim
 #----- DEVT TEST PROD
 SpaceName=DEVT
-LongName="ORCA1_SI3_PISCES NEMO configuration"
+LongName="ORCA2_SI3_PISCES NEMO configuration"
 TagName=NEMO
 #D- Choice of experiment in EXPERIEMENTS directory
@@ -73,5 +73,5 @@
 RestartJobName=NO1-T17
 #D- Path Server Group Login
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 
 #========================================================================
@@ -84,5 +84,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -97,5 +97,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -110,5 +110,5 @@
 # Define restart simulation name
 RestartJobName=eOR1L3P-V1
-RestartPath=${ARCHIVE}/../../gzi/rgzi002/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 # Old component name for restart (if empty, use new name)
 OldName=
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/COMP/pisces.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/COMP/pisces.card	(revision 5535)
@@ -3,5 +3,6 @@
 
 [UserChoices]
-age=y
+pis=y
+age=n
 cfc11=n
 cfc12=n
@@ -47,5 +48,5 @@
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                , namelist_pisces_cfg        ), \
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_trc_cfg                   , namelist_trc_cfg           ), \
-        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces.xml                , file_def_nemo-pisces.xml   )
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml      )
 
 
@@ -64,8 +65,7 @@
         (${config_UserChoices_JobName}_1y_CFC12.nc         , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_CFC12.nc     , NONE ) , \
         (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \
-        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \
-        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \
+        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , NONE   ) , \
+        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , NONE   ) , \
         (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_D}/${PREFIX}_1D_bioscalar.nc , NONE)
-
 
 [Post_1D_bioscalar]
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/COMP/si3.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/COMP/si3.card	(revision 5535)
@@ -20,5 +20,5 @@
 List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
         (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
-        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_ice_cfg, namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
         (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/config.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/core/ia/config.card	(revision 5535)
@@ -11,10 +11,10 @@
 #============================
 #-- (<8 chars MAX for JobName)
-JobName=OR2Si3P-IA-CORE-v403-01
+JobName=OR2Si3Pv4-IA-CORE-01
 #----- Short Name of Experiment
 ExperimentName=iann
 #----- DEVT TEST PROD
 SpaceName=DEVT
-LongName="ORCA1_SI3_PISCES NEMO configuration"
+LongName="ORCA2_SI3_PISCES NEMO configuration"
 TagName=NEMO
 #D- Choice of experiment in EXPERIEMENTS directory
@@ -73,5 +73,5 @@
 RestartJobName=NO1-T17
 #D- Path Server Group Login
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 
 #========================================================================
@@ -84,5 +84,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -97,5 +97,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -110,5 +110,5 @@
 # Define restart simulation name
 RestartJobName=eOR1L3P-V1
-RestartPath=${ARCHIVE}/../../gzi/rgzi002/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 # Old component name for restart (if empty, use new name)
 OldName=
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/COMP/pisces.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/COMP/pisces.card	(revision 5535)
@@ -3,5 +3,6 @@
 
 [UserChoices]
-age=y
+pis=y
+age=n
 cfc11=n
 cfc12=n
@@ -47,5 +48,5 @@
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                , namelist_pisces_cfg        ), \
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_trc_cfg                   , namelist_trc_cfg           ), \
-        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces.xml                , file_def_nemo-pisces.xml   )
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml      )
 
 
@@ -64,8 +65,7 @@
         (${config_UserChoices_JobName}_1y_CFC12.nc         , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_CFC12.nc     , NONE ) , \
         (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \
-        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \
-        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \
+        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , NONE   ) , \
+        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , NONE   ) , \
         (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_D}/${PREFIX}_1D_bioscalar.nc , NONE)
-
 
 [Post_1D_bioscalar]
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/COMP/si3.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/COMP/si3.card	(revision 5535)
@@ -3,4 +3,5 @@
 
 [UserChoices]
+Init_From_File=0
 OutputLevel=10
 
@@ -19,5 +20,5 @@
 List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
         (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
-        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_ice_cfg, namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
         (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/config.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_PISCES/jra/ia/config.card	(revision 5535)
@@ -11,10 +11,10 @@
 #============================
 #-- (<8 chars MAX for JobName)
-JobName=OR2Si3P-IA-JRA-v403-01
+JobName=OR2Si3Pv4-IA-JRA-01
 #----- Short Name of Experiment
 ExperimentName=iann
 #----- DEVT TEST PROD
 SpaceName=DEVT
-LongName="ORCA1_SI3_PISCES NEMO configuration"
+LongName="ORCA2_SI3_PISCES NEMO configuration"
 TagName=NEMO
 #D- Choice of experiment in EXPERIEMENTS directory
@@ -73,5 +73,5 @@
 RestartJobName=NO1-T17
 #D- Path Server Group Login
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 
 #========================================================================
@@ -84,5 +84,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -97,5 +97,5 @@
 # Define restart simulation name
 RestartJobName=NL1
-RestartPath=${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
 # Old component name for restart (if empty, use new name)
 OldName=
@@ -110,5 +110,5 @@
 # Define restart simulation name
 RestartJobName=eOR1L3P-V1
-RestartPath=${ARCHIVE}/../../gzi/rgzi002/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
 # Old component name for restart (if empty, use new name)
 OldName=
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/opa9.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/opa9.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/opa9.card	(revision 5535)
@@ -0,0 +1,163 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+#==============================================================
+ORCA_version=ORCA2.4
+mesh_mask=n
+OutputLevel=10
+forcing=core
+R_FORCING=${R_IN}/OCE/NEMO/FORCINGS/COREII
+#==============================================================
+
+[InitialStateFiles]
+List=   (${SUBMIT_DIR}/PARAM/NAMELIST/EMPave_old.dat, EMPave_old.dat)
+
+[BoundaryFiles]
+List=   ()
+
+
+ListNonDel= (${opa9_UserChoices_R_FORCING}/u_10.15JUNE2009_fill.nc            , u_10_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/v_10.15JUNE2009_fill.nc            , v_10_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/t_10.15JUNE2009_fill.nc            , t_10_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/q_10.15JUNE2009_fill.nc            , q_10_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/ncar_rad.15JUNE2009_fill.nc        , ncar_rad_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/ncar_rad.15JUNE2009_fill.nc        , ncar_rad_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/ncar_precip.15JUNE2009_fill.nc     , ncar_precip_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/ncar_precip.15JUNE2009_fill.nc     , ncar_precip_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/slp.15JUNE2009_fill.nc             , slp_CORE2_fill.nc), \
+            (${opa9_UserChoices_R_FORCING}/weights_core_orca2_bilinear_noc.nc, weights_bilinear.nc), \
+            (${opa9_UserChoices_R_FORCING}/weights_core_orca2_bicubic_noc.nc , weights_bicubic.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates.nc, coordinates.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates_xios.nc, coordinates_xios.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_domain_cfg.nc, domain_cfg.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_maskMFO.nc, maskMFO.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_resto.nc, resto.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_subbasins.nc , subbasins.nc    ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_bot.nc, mixing_power_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_pyc.nc, mixing_power_pyc.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_cri.nc, mixing_power_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_bot.nc, decay_scale_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_cri.nc, decay_scale_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_sali_ref_clim_monthly.nc, sali_ref_clim_monthly.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_eddy_viscosity_3D.nc, eddy_viscosity_3D.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_geothermal_heating.nc, geothermal_heating.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/potT_PHC3WOA_ORCA2.nc, data_1m_potential_temperature_nomask.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/Salt_corr_PHC3WOA09_ORCA2.nc, data_1m_salinity_nomask.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sst_PHC3WOA_ORCA2.nc, sst_data.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sss_corr_PHC3WOA09_ORCA2.nc, sss_data.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/runoff_core_monthly_ORCA2.nc, runoff_core_monthly.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/chlorophyll_ORCA2.nc, chlorophyll.nc)
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ref           , namelist_ref        ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/domain_def_nemo.xml    , domain_def_nemo.xml ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/axis_def_nemo.xml      , axis_def_nemo.xml   ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/grid_def_nemo.xml      , grid_def_nemo.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-oce.xml , field_def_nemo-oce.xml  ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_${opa9_UserChoices_forcing}_${exptype}_cfg, namelist_cfg), \
+        (${SUBMIT_DIR}/PARAM/XML/context_nemo.xml              , context_nemo.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/iodef.xml                     , iodef.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-oce.xml         , file_def_nemo-oce.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart.nc,  restart.nc, restart.nc), \
+        (EMPave.dat,  EMPave.dat, EMPave_old.dat)
+
+[OutputText]
+List=   (ocean.output, run.stat, STRAIT.dat, namelist_ref, namelist_cfg )
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1y_scalar.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_scalar.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_T.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_U.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_V.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_W.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_2D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_3D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_W.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_W.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_trdtra.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_scalar.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_scalar.nc     , Post_1M_scalar),\
+        (${config_UserChoices_JobName}_1m_grid_T.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_T.nc     , Post_1M_grid_T),\
+        (${config_UserChoices_JobName}_1m_grid_U.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_U.nc     , Post_1M_grid_U),\
+        (${config_UserChoices_JobName}_1m_grid_V.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_V.nc     , Post_1M_grid_V),\
+        (${config_UserChoices_JobName}_1m_grid_W.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_W.nc     , Post_1M_grid_W),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_2D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_2D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_3D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_3D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_W.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_W.nc   , Post_1M_diaptr_W),\
+        (${config_UserChoices_JobName}_1m_strait_oce.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_strait_oce.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_trdtra.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_V.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_trdtra.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_SBC.nc       , ${R_OUT_OCE_O_D}/${PREFIX}_1D_SBC.nc        , NONE          ),\
+        (${config_UserChoices_JobName}_1d_scalar.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_scalar.nc     , NONE          ),\
+        (mesh_mask.nc     , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc                , NONE          ),\
+        (runoffs.nc       , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_runoffs.nc                  , NONE          ),\
+        (damping.coeff.nc , ${R_OUT_OCE_O_D}/${PREFIX}_damping.coeff.nc                              , NONE          ),\
+        (output.abort.nc  , ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc                                 , NONE          ),\
+        (output.init.nc   , ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc,NONE    )
+
+# Monthly analysis
+
+[Post_1M_scalar]
+Patches = ()
+GatherWithInternal = (time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (scmastot, scvoltot, scsshtot, scsshste, scsshtst, sctemtot, scsaltot, ibgheat_tot, sbgheat_tot)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_grid_T]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (zos, tos, sos, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3t, thetao, so)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_U]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauuo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3u, uocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_V]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauvo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3v, vocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_W]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ( )
+ChunckJob2D = NONE
+TimeSeriesVars3D = ( )
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_1M_diaptr_W]
+Patches = ()
+GatherWithInternal = (nav_lat, depthw, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (msftyz_glo, msftyz_atl, msftyz_ind)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/pisces.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/pisces.card	(revision 5535)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+pis=n
+age=y
+cfc11=n
+cfc12=n
+Offline_Mode=n
+OutputLevel=10
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List=       ()
+
+ListNonDel= ()
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_top_ref            , namelist_top_ref), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-pisces.xml   , field_def_nemo-pisces.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-innerttrc.xml, field_def_nemo-innerttrc.xml), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_top_cfg                   , namelist_top_cfg           ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_trc.nc,  restart_trc.nc, restart_trc.nc)
+
+[OutputText]
+List=   (namelist_top_ref, namelist_top_cfg, tracer.stat)
+
+
+[OutputFiles]
+List= (${config_UserChoices_JobName}_1y_Age.nc           , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_Age.nc       , NONE )
+
+
+[Post_1Y_inerttrc]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = OFF
+TimeSeriesVars3D = (Age)
+ChunckJob3D = NONE
+Seasonal=OFF
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/si3.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/si3.card	(revision 5535)
@@ -0,0 +1,43 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+Init_From_File=0
+OutputLevel=10
+
+
+[InitialStateFiles]
+List=	()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_ice.nc, restart_icemod.nc, restart_ice_in.nc)
+
+[OutputText]
+List=   (namelist_ice)
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1m_icemod.nc     , ${R_OUT_ICE_O_M}/${PREFIX}_1M_icemod.nc    , Post_1M_icemod ),\
+        (${config_UserChoices_JobName}_1m_strait_ice.nc , ${R_OUT_ICE_O_M}/${PREFIX}_1M_strait_ice.nc, NONE           )
+
+[Post_1M_icemod]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (snthic, sithic, sivolu, snvolu, siconc, sisali, sitemp, sistem, siheco, snheco, sivelo, sishea, sfxice)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/xios.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/xios.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/COMP/xios.card	(revision 5535)
@@ -0,0 +1,26 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=   ()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+List=   (NONE)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=   ()
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/config.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/clim/config.card	(revision 5535)
@@ -0,0 +1,155 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+# This is config.card file for NEMO ORCA1_LIM3_PISCES configuration
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=OR2Si3Tv4-CLIM-CORE-01
+#----- Short Name of Experiment
+ExperimentName=clim
+#----- DEVT TEST PROD
+SpaceName=DEVT
+LongName="ORCA2_SI3_TRC NEMO configuration"
+TagName=NEMO
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=ORCA2_ICE_TRC/core/clim
+#============================
+#-- leap, noleap, 360d
+CalendarType=noleap
+#============================
+#-- Begin and end of Job
+#-- "YYYY-MM-DD"
+DateBegin=1948-01-01
+DateEnd=2009-12-31
+#============================
+#-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+#============================
+#-- Source following file with module settings, only if it exists
+EnvFile=${SUBMIT_DIR}/../ARCH/arch.env
+#============================
+#-- ResolAtm indicates the atmospheric resolution
+#   This variable is used in the executable name 
+ResolOce=ORCA2
+#============================
+# OptMode indicates the optimization mode choosen during compilation
+# This variable is used in the executable name
+OptMode=prod
+#
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+OCE= (opa9, NEMO_v4)
+ICE= (si3,  SI3v1)
+MBG= (pisces, PISCESv2)
+IOS= (xios, XIOS)
+#========================================================================
+#D-- Executable -
+[Executable]
+Name=nemo
+#D- For each component, Real name of executable
+OCE= (opa_online_${OptMode}.exe, nemo, 30MPI)
+ICE= ("", "", "")
+MBG= ("", "", "")
+IOS= (xios_server_${OptMode}.exe, xios.x, 1MPI)
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=0094-12-31
+#D- Define restart simulation name
+RestartJobName=NO1-T17
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
+
+#========================================================================
+#D-- OCE -
+[OCE]
+WriteFrequency="5D 1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- ICE -
+[ICE]
+WriteFrequency="1M"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- MBG -
+[MBG]
+WriteFrequency="1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=0169-12-31
+# Define restart simulation name
+RestartJobName=eOR1L3P-V1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- Post -
+[Post]
+ParserXIOS=FALSE
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=NONE
+#D- Do we pack restart and debug txt files, this flag determines
+#D- frequency of pack submission (use NONE for DRYRUN=3)
+PackFrequency=1Y
+#D- To have only the last period in RESTART/*.tar : save 90% of volume.
+#D- TRUE to be effective (nothing by default)
+LightRestartPack=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you dont want)
+TimeSeriesFrequency=1Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you dont want)
+SeasonalFrequency=NONE
+#D- If you want to produce compute PCMDI metrics from seasonal average
+#D- Set FALSE to deactivate the metrics computation.
+MetricsPCMDI=FALSE
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulations years
+SeasonalFrequencyOffset=0
+
+#========================================================================
+#D-- IOS -
+[IOS]
+WriteFrequency=""
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart= n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=1899-12-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/IPSLCM5A/DEVT/piControl
+# Old component name for restart (if empty, use new name)
+OldName=
+#========================================================================
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/opa9.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/opa9.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/opa9.card	(revision 5535)
@@ -0,0 +1,157 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+#==============================================================
+ORCA_version=ORCA2.4
+mesh_mask=n
+OutputLevel=10
+forcing=core
+R_FORCING=${R_IN}/OCE/NEMO/FORCINGS/COREII
+ListForcing=(u_10_CORE2_fill v_10_CORE2_fill t_10_CORE2_fill q_10_CORE2_fill ncar_rad_CORE2_fill ncar_precip_CORE2_fill slp_CORE2_fill)
+YearForcingInit=1948
+YearForcingEnd=2009
+#==============================================================
+
+[InitialStateFiles]
+List=   (${SUBMIT_DIR}/PARAM/NAMELIST/EMPave_old.dat, EMPave_old.dat)
+
+[BoundaryFiles]
+List=   ()
+
+
+ListNonDel= (${opa9_UserChoices_R_FORCING}/weights_core_orca2_bilinear_noc.nc, weights_bilinear.nc), \
+            (${opa9_UserChoices_R_FORCING}/weights_core_orca2_bicubic_noc.nc , weights_bicubic.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates.nc, coordinates.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates_xios.nc, coordinates_xios.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_domain_cfg.nc, domain_cfg.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_maskMFO.nc, maskMFO.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_resto.nc, resto.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_subbasins.nc , subbasins.nc    ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_bot.nc, mixing_power_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_pyc.nc, mixing_power_pyc.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_cri.nc, mixing_power_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_bot.nc, decay_scale_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_cri.nc, decay_scale_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_sali_ref_clim_monthly.nc, sali_ref_clim_monthly.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_eddy_viscosity_3D.nc, eddy_viscosity_3D.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_geothermal_heating.nc, geothermal_heating.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/potT_PHC3WOA_ORCA2.nc, data_1m_potential_temperature_nomask.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/Salt_corr_PHC3WOA09_ORCA2.nc, data_1m_salinity_nomask.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sst_PHC3WOA_ORCA2.nc, sst_data.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sss_corr_PHC3WOA09_ORCA2.nc, sss_data.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/runoff_core_monthly_ORCA2.nc, runoff_core_monthly.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/chlorophyll_ORCA2.nc, chlorophyll.nc)
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ref           , namelist_ref        ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/domain_def_nemo.xml    , domain_def_nemo.xml ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/axis_def_nemo.xml      , axis_def_nemo.xml   ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/grid_def_nemo.xml      , grid_def_nemo.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-oce.xml , field_def_nemo-oce.xml  ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_${opa9_UserChoices_forcing}_${exptype}_cfg, namelist_cfg), \
+        (${SUBMIT_DIR}/PARAM/XML/context_nemo.xml              , context_nemo.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/iodef.xml                     , iodef.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-oce.xml         , file_def_nemo-oce.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart.nc,  restart.nc, restart.nc), \
+        (EMPave.dat,  EMPave.dat, EMPave_old.dat)
+
+[OutputText]
+List=   (ocean.output, run.stat, STRAIT.dat, namelist_ref, namelist_cfg )
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1y_scalar.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_scalar.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_T.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_U.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_V.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_W.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_2D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_3D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_W.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_W.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_trdtra.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_scalar.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_scalar.nc     , Post_1M_scalar),\
+        (${config_UserChoices_JobName}_1m_grid_T.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_T.nc     , Post_1M_grid_T),\
+        (${config_UserChoices_JobName}_1m_grid_U.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_U.nc     , Post_1M_grid_U),\
+        (${config_UserChoices_JobName}_1m_grid_V.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_V.nc     , Post_1M_grid_V),\
+        (${config_UserChoices_JobName}_1m_grid_W.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_W.nc     , Post_1M_grid_W),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_2D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_2D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_3D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_3D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_W.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_W.nc   , Post_1M_diaptr_W),\
+        (${config_UserChoices_JobName}_1m_strait_oce.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_strait_oce.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_trdtra.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_V.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_trdtra.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_SBC.nc       , ${R_OUT_OCE_O_D}/${PREFIX}_1D_SBC.nc        , NONE          ),\
+        (${config_UserChoices_JobName}_1d_scalar.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_scalar.nc     , NONE          ),\
+        (mesh_mask.nc     , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc                , NONE          ),\
+        (runoffs.nc       , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_runoffs.nc                  , NONE          ),\
+        (damping.coeff.nc , ${R_OUT_OCE_O_D}/${PREFIX}_damping.coeff.nc                              , NONE          ),\
+        (output.abort.nc  , ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc                                 , NONE          ),\
+        (output.init.nc   , ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc,NONE    )
+
+# Monthly analysis
+
+[Post_1M_scalar]
+Patches = ()
+GatherWithInternal = (time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (scmastot, scvoltot, scsshtot, scsshste, scsshtst, sctemtot, scsaltot, ibgheat_tot, sbgheat_tot)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_grid_T]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (zos, tos, sos, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3t, thetao, so)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_U]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauuo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3u, uocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_V]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauvo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3v, vocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_W]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ( )
+ChunckJob2D = NONE
+TimeSeriesVars3D = ( )
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_1M_diaptr_W]
+Patches = ()
+GatherWithInternal = (nav_lat, depthw, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (msftyz_glo, msftyz_atl, msftyz_ind)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/pisces.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/pisces.card	(revision 5535)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+pis=n
+age=y
+cfc11=n
+cfc12=n
+Offline_Mode=n
+OutputLevel=10
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List=       ()
+
+ListNonDel= ()
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_top_ref            , namelist_top_ref), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-pisces.xml   , field_def_nemo-pisces.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-innerttrc.xml, field_def_nemo-innerttrc.xml), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_top_cfg                   , namelist_top_cfg           ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_trc.nc,  restart_trc.nc, restart_trc.nc)
+
+[OutputText]
+List=   (namelist_top_ref, namelist_top_cfg, tracer.stat)
+
+
+[OutputFiles]
+List= (${config_UserChoices_JobName}_1y_Age.nc           , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_Age.nc       , NONE )
+
+
+[Post_1Y_inerttrc]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = OFF
+TimeSeriesVars3D = (Age)
+ChunckJob3D = NONE
+Seasonal=OFF
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/si3.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/si3.card	(revision 5535)
@@ -0,0 +1,43 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+Init_From_File=0
+OutputLevel=10
+
+
+[InitialStateFiles]
+List=	()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_ice.nc, restart_icemod.nc, restart_ice_in.nc)
+
+[OutputText]
+List=   (namelist_ice)
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1m_icemod.nc     , ${R_OUT_ICE_O_M}/${PREFIX}_1M_icemod.nc    , Post_1M_icemod ),\
+        (${config_UserChoices_JobName}_1m_strait_ice.nc , ${R_OUT_ICE_O_M}/${PREFIX}_1M_strait_ice.nc, NONE           )
+
+[Post_1M_icemod]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (snthic, sithic, sivolu, snvolu, siconc, sisali, sitemp, sistem, siheco, snheco, sivelo, sishea, sfxice)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/xios.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/xios.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/COMP/xios.card	(revision 5535)
@@ -0,0 +1,26 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=   ()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+List=   (NONE)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=   ()
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/config.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/core/ia/config.card	(revision 5535)
@@ -0,0 +1,155 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+# This is config.card file for NEMO ORCA1_LIM3_PISCES configuration
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=OR2Si3Tv4-IA-CORE-01
+#----- Short Name of Experiment
+ExperimentName=iann
+#----- DEVT TEST PROD
+SpaceName=DEVT
+LongName="ORCA2_SI3_TRC NEMO configuration"
+TagName=NEMO
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=ORCA2_ICE_TRC/core/ia
+#============================
+#-- leap, noleap, 360d
+CalendarType=noleap
+#============================
+#-- Begin and end of Job
+#-- "YYYY-MM-DD"
+DateBegin=1948-01-01
+DateEnd=2009-12-31
+#============================
+#-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+#============================
+#-- Source following file with module settings, only if it exists
+EnvFile=${SUBMIT_DIR}/../ARCH/arch.env
+#============================
+#-- ResolAtm indicates the atmospheric resolution
+#   This variable is used in the executable name 
+ResolOce=ORCA2
+#============================
+# OptMode indicates the optimization mode choosen during compilation
+# This variable is used in the executable name
+OptMode=prod
+#
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+OCE= (opa9, NEMO_v4)
+ICE= (si3,  SI3v1)
+MBG= (pisces, PISCESv2)
+IOS= (xios, XIOS)
+#========================================================================
+#D-- Executable -
+[Executable]
+Name=nemo
+#D- For each component, Real name of executable
+OCE= (opa_online_${OptMode}.exe, nemo, 30MPI)
+ICE= ("", "", "")
+MBG= ("", "", "")
+IOS= (xios_server_${OptMode}.exe, xios.x, 1MPI)
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=0094-12-31
+#D- Define restart simulation name
+RestartJobName=NO1-T17
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
+
+#========================================================================
+#D-- OCE -
+[OCE]
+WriteFrequency="5D 1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- ICE -
+[ICE]
+WriteFrequency="1M"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- MBG -
+[MBG]
+WriteFrequency="1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=0169-12-31
+# Define restart simulation name
+RestartJobName=eOR1L3P-V1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- Post -
+[Post]
+ParserXIOS=FALSE
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=NONE
+#D- Do we pack restart and debug txt files, this flag determines
+#D- frequency of pack submission (use NONE for DRYRUN=3)
+PackFrequency=1Y
+#D- To have only the last period in RESTART/*.tar : save 90% of volume.
+#D- TRUE to be effective (nothing by default)
+LightRestartPack=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you dont want)
+TimeSeriesFrequency=1Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you dont want)
+SeasonalFrequency=NONE
+#D- If you want to produce compute PCMDI metrics from seasonal average
+#D- Set FALSE to deactivate the metrics computation.
+MetricsPCMDI=FALSE
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulations years
+SeasonalFrequencyOffset=0
+
+#========================================================================
+#D-- IOS -
+[IOS]
+WriteFrequency=""
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart= n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=1899-12-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/IPSLCM5A/DEVT/piControl
+# Old component name for restart (if empty, use new name)
+OldName=
+#========================================================================
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/opa9.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/opa9.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/opa9.card	(revision 5535)
@@ -0,0 +1,156 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+#==============================================================
+ORCA_version=ORCA2.4
+mesh_mask=n
+OutputLevel=forcing=jra
+R_FORCING=${R_IN}/OCE/NEMO/FORCINGS/MRI-JRA55-do-1-4-0
+ListForcing=(u_10 v_10 t_10 q_10 rsds rlds rain snow slp)
+YearForcingInit=1958
+YearForcingEnd=2018
+#==============================================================
+
+[InitialStateFiles]
+List=   (${SUBMIT_DIR}/PARAM/NAMELIST/EMPave_old.dat, EMPave_old.dat)
+
+[BoundaryFiles]
+List=   ()
+
+
+ListNonDel= (${opa9_UserChoices_R_FORCING}/weights_JRA55_ORCA2_bilinear.nc, weights_bilinear.nc), \
+            (${opa9_UserChoices_R_FORCING}/weights_JRA55_ORCA2_bicubic.nc , weights_bicubic.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates.nc, coordinates.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_coordinates_xios.nc, coordinates_xios.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_domain_cfg.nc, domain_cfg.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_maskMFO.nc, maskMFO.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_resto.nc, resto.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_subbasins.nc , subbasins.nc    ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_bot.nc, mixing_power_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_pyc.nc, mixing_power_pyc.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_mixing_power_cri.nc, mixing_power_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_bot.nc, decay_scale_bot.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_decay_scale_cri.nc, decay_scale_cri.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_sali_ref_clim_monthly.nc, sali_ref_clim_monthly.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_eddy_viscosity_3D.nc, eddy_viscosity_3D.nc ), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/${ORCAGRID}_geothermal_heating.nc, geothermal_heating.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/potT_PHC3WOA_ORCA2.nc, data_1m_potential_temperature_nomask.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/Salt_corr_PHC3WOA09_ORCA2.nc, data_1m_salinity_nomask.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sst_PHC3WOA_ORCA2.nc, sst_data.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/sss_corr_PHC3WOA09_ORCA2.nc, sss_data.nc), \
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/runoff_core_monthly_ORCA2.nc, runoff_core_monthly.nc),\
+            (${R_IN}/OCE/NEMO/${opa9_UserChoices_ORCA_version}/OPA/chlorophyll_ORCA2.nc, chlorophyll.nc)
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ref           , namelist_ref        ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/domain_def_nemo.xml    , domain_def_nemo.xml ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/axis_def_nemo.xml      , axis_def_nemo.xml   ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/grid_def_nemo.xml      , grid_def_nemo.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-oce.xml , field_def_nemo-oce.xml  ), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_${opa9_UserChoices_forcing}_${exptype}_cfg, namelist_cfg), \
+        (${SUBMIT_DIR}/PARAM/XML/context_nemo.xml              , context_nemo.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/iodef.xml                     , iodef.xml               ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-oce.xml         , file_def_nemo-oce.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart.nc,  restart.nc, restart.nc), \
+        (EMPave.dat,  EMPave.dat, EMPave_old.dat)
+
+[OutputText]
+List=   (ocean.output, run.stat, STRAIT.dat, namelist_ref, namelist_cfg )
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1y_scalar.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_scalar.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_T.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_U.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_V.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_grid_W.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_2D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_T_3D.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_diaptr_W.nc  , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_W.nc   , NONE          ),\
+        (${config_UserChoices_JobName}_1y_trdtra.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_scalar.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_scalar.nc     , Post_1M_scalar),\
+        (${config_UserChoices_JobName}_1m_grid_T.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_T.nc     , Post_1M_grid_T),\
+        (${config_UserChoices_JobName}_1m_grid_U.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_U.nc     , Post_1M_grid_U),\
+        (${config_UserChoices_JobName}_1m_grid_V.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_V.nc     , Post_1M_grid_V),\
+        (${config_UserChoices_JobName}_1m_grid_W.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_W.nc     , Post_1M_grid_W),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_2D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_2D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_T_3D.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T_3D.nc   , NONE),\
+        (${config_UserChoices_JobName}_1m_diaptr_W.nc  , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_W.nc   , Post_1M_diaptr_W),\
+        (${config_UserChoices_JobName}_1m_strait_oce.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_strait_oce.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1m_trdtra.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_V.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_V.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_5d_trdtra.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_trdtra.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_T.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_U.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_U.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_grid_W.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_W.nc     , NONE          ),\
+        (${config_UserChoices_JobName}_1d_SBC.nc       , ${R_OUT_OCE_O_D}/${PREFIX}_1D_SBC.nc        , NONE          ),\
+        (${config_UserChoices_JobName}_1d_scalar.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_scalar.nc     , NONE          ),\
+        (mesh_mask.nc     , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc                , NONE          ),\
+        (runoffs.nc       , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_runoffs.nc                  , NONE          ),\
+        (damping.coeff.nc , ${R_OUT_OCE_O_D}/${PREFIX}_damping.coeff.nc                              , NONE          ),\
+        (output.abort.nc  , ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc                                 , NONE          ),\
+        (output.init.nc   , ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc,NONE    )
+
+# Monthly analysis
+
+[Post_1M_scalar]
+Patches = ()
+GatherWithInternal = (time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (scmastot, scvoltot, scsshtot, scsshste, scsshtst, sctemtot, scsaltot, ibgheat_tot, sbgheat_tot)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_grid_T]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (zos, tos, sos, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3t, thetao, so)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_U]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauuo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3u, uocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_V]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (tauvo)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (e3v, vocetr_eff)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_grid_W]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ( )
+ChunckJob2D = NONE
+TimeSeriesVars3D = ( )
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_1M_diaptr_W]
+Patches = ()
+GatherWithInternal = (nav_lat, depthw, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (msftyz_glo, msftyz_atl, msftyz_ind)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/pisces.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/pisces.card	(revision 5535)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+pis=n
+age=y
+cfc11=n
+cfc12=n
+Offline_Mode=n
+OutputLevel=10
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List=       ()
+
+ListNonDel= ()
+
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_top_ref            , namelist_top_ref), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-pisces.xml   , field_def_nemo-pisces.xml  ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-innerttrc.xml, field_def_nemo-innerttrc.xml), \
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_top_cfg                   , namelist_top_cfg           ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_trc.nc,  restart_trc.nc, restart_trc.nc)
+
+[OutputText]
+List=   (namelist_top_ref, namelist_top_cfg, tracer.stat)
+
+
+[OutputFiles]
+List= (${config_UserChoices_JobName}_1y_Age.nc           , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_Age.nc       , NONE )
+
+
+[Post_1Y_inerttrc]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = OFF
+TimeSeriesVars3D = (Age)
+ChunckJob3D = NONE
+Seasonal=OFF
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/si3.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/si3.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/si3.card	(revision 5535)
@@ -0,0 +1,43 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+Init_From_File=0
+OutputLevel=10
+
+
+[InitialStateFiles]
+List=	()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   (${MODIPSL}/modeles/NEMO/cfgs/SHARED/namelist_ice_ref      , namelist_ice_ref ), \
+        (${MODIPSL}/modeles/NEMO/cfgs/SHARED/field_def_nemo-ice.xml, field_def_nemo-ice.xml ),\
+        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_ice_cfg             , namelist_ice_cfg ), \
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-ice_${RESOL_OCE}.xml, file_def_nemo-ice.xml   )
+
+
+[RestartFiles]
+List=   (${config_UserChoices_JobName}_${NEMO_END}_restart_ice.nc, restart_icemod.nc, restart_ice_in.nc)
+
+[OutputText]
+List=   (namelist_ice)
+
+[OutputFiles]
+List=   (${config_UserChoices_JobName}_1m_icemod.nc     , ${R_OUT_ICE_O_M}/${PREFIX}_1M_icemod.nc    , Post_1M_icemod ),\
+        (${config_UserChoices_JobName}_1m_strait_ice.nc , ${R_OUT_ICE_O_M}/${PREFIX}_1M_strait_ice.nc, NONE           )
+
+[Post_1M_icemod]
+Patches = ()
+GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (snthic, sithic, sivolu, snvolu, siconc, sisali, sitemp, sistem, siheco, snheco, sivelo, sishea, sfxice)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/xios.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/xios.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/COMP/xios.card	(revision 5535)
@@ -0,0 +1,26 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=   ()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+List=   (NONE)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=   ()
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/config.card	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_ICE_TRC/jra/ia/config.card	(revision 5535)
@@ -0,0 +1,155 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+# This is config.card file for NEMO ORCA1_LIM3_PISCES configuration
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=OR2Si3Tv4-IA-JRA-01
+#----- Short Name of Experiment
+ExperimentName=iann
+#----- DEVT TEST PROD
+SpaceName=DEVT
+LongName="ORCA2_SI3_TRC NEMO configuration"
+TagName=NEMO
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=ORCA2_ICE_TRC/jra/ia
+#============================
+#-- leap, noleap, 360d
+CalendarType=noleap
+#============================
+#-- Begin and end of Job
+#-- "YYYY-MM-DD"
+DateBegin=1958-01-01
+DateEnd=2018-12-31
+#============================
+#-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+#============================
+#-- Source following file with module settings, only if it exists
+EnvFile=${SUBMIT_DIR}/../ARCH/arch.env
+#============================
+#-- ResolAtm indicates the atmospheric resolution
+#   This variable is used in the executable name 
+ResolOce=ORCA2
+#============================
+# OptMode indicates the optimization mode choosen during compilation
+# This variable is used in the executable name
+OptMode=prod
+#
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+OCE= (opa9, NEMO_v4)
+ICE= (si3,  SI3v1)
+MBG= (pisces, PISCESv2)
+IOS= (xios, XIOS)
+#========================================================================
+#D-- Executable -
+[Executable]
+Name=nemo
+#D- For each component, Real name of executable
+OCE= (opa_online_${OptMode}.exe, nemo, 30MPI)
+ICE= ("", "", "")
+MBG= ("", "", "")
+IOS= (xios_server_${OptMode}.exe, xios.x, 1MPI)
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=0094-12-31
+#D- Define restart simulation name
+RestartJobName=NO1-T17
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
+
+#========================================================================
+#D-- OCE -
+[OCE]
+WriteFrequency="5D 1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- ICE -
+[ICE]
+WriteFrequency="1M"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-31
+# Define restart simulation name
+RestartJobName=NL1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- MBG -
+[MBG]
+WriteFrequency="1M 1Y"
+Restart= n
+##-- Last day of the experience used as restart
+RestartDate=0169-12-31
+# Define restart simulation name
+RestartJobName=eOR1L3P-V1
+RestartPath=${ARCHIVE}/IGCM_OUT/NEMO/DEVT/clim
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- Post -
+[Post]
+ParserXIOS=FALSE
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=NONE
+#D- Do we pack restart and debug txt files, this flag determines
+#D- frequency of pack submission (use NONE for DRYRUN=3)
+PackFrequency=1Y
+#D- To have only the last period in RESTART/*.tar : save 90% of volume.
+#D- TRUE to be effective (nothing by default)
+LightRestartPack=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you dont want)
+TimeSeriesFrequency=1Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you dont want)
+SeasonalFrequency=NONE
+#D- If you want to produce compute PCMDI metrics from seasonal average
+#D- Set FALSE to deactivate the metrics computation.
+MetricsPCMDI=FALSE
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulations years
+SeasonalFrequencyOffset=0
+
+#========================================================================
+#D-- IOS -
+[IOS]
+WriteFrequency=""
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart= n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=1899-12-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/IPSLCM5A/DEVT/piControl
+# Old component name for restart (if empty, use new name)
+OldName=
+#========================================================================
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/clim/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/clim/COMP/pisces.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/clim/COMP/pisces.card	(revision 5535)
@@ -5,5 +5,6 @@
 #==============================================================
 ORCA_version=ORCA2.4
-age=y
+pis=y
+age=n
 cfc11=n
 cfc12=n
@@ -61,7 +62,7 @@
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                , namelist_pisces_cfg), \
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_trc_cfg                   , namelist_trc_cfg   ), \
-        (${SUBMIT_DIR}/PARAM/XML/context_nemo_offline.xml                    , context_nemo.xml   ), \
+        (${SUBMIT_DIR}/PARAM/XML/context_nemo_offline.xml                , context_nemo.xml   ), \
         (${SUBMIT_DIR}/PARAM/XML/iodef.xml                               , iodef.xml               ), \
-        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces_offline.xml            , file_def_nemo-pisces.xml   )
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
 
 
@@ -80,6 +81,6 @@
         (${config_UserChoices_JobName}_1y_CFC12.nc         , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_CFC12.nc     , NONE ) , \
         (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \
-        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \
-        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \
+        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , NONE   ) , \
+        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , NONE   ) , \
         (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_D}/${PREFIX}_1D_bioscalar.nc , NONE)
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/clim/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/clim/config.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/clim/config.card	(revision 5535)
@@ -11,5 +11,5 @@
 #============================
 #-- (<8 chars MAX for JobName)
-JobName=OR2PIS-v402-v1.1
+JobName=OR2PISv4-CLIM-01
 #----- Short Name of Experiment
 ExperimentName=clim
@@ -47,4 +47,5 @@
 #D- For each component, Name of component, Tag of component
 MBG= (pisces, PISCES)
+IOS= (xios, XIOS)
 #========================================================================
 #D-- Executable -
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/ia/COMP/pisces.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/ia/COMP/pisces.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/ia/COMP/pisces.card	(revision 5535)
@@ -5,5 +5,6 @@
 #==============================================================
 ORCA_version=ORCA2.4
-age=y
+pis=y
+age=n
 cfc11=n
 cfc12=n
@@ -65,7 +66,7 @@
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                , namelist_pisces_cfg), \
         (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_trc_cfg                   , namelist_trc_cfg   ), \
-        (${SUBMIT_DIR}/PARAM/XML/context_nemo_offline.xml                    , context_nemo.xml   ), \
+        (${SUBMIT_DIR}/PARAM/XML/context_nemo_offline.xml                , context_nemo.xml   ), \
         (${SUBMIT_DIR}/PARAM/XML/iodef.xml                               , iodef.xml               ), \
-        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces_offline.xml            , file_def_nemo-pisces.xml   )
+        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-top.xml                   , file_def_nemo-top.xml   )
 
 
@@ -84,6 +85,6 @@
         (${config_UserChoices_JobName}_1y_CFC12.nc         , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_CFC12.nc     , NONE ) , \
         (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \
-        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \
-        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \
+        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , NONE   ) , \
+        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , NONE   ) , \
         (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_D}/${PREFIX}_1D_bioscalar.nc , NONE)
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/ia/config.card
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/ia/config.card	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/EXPERIMENTS/ORCA2_OFF_PISCES/ia/config.card	(revision 5535)
@@ -11,5 +11,5 @@
 #============================
 #-- (<8 chars MAX for JobName)
-JobName=OR2PIS-piCM5A-v402-v1.1
+JobName=OR2PISv4-piCM5A-01
 #----- Short Name of Experiment
 ExperimentName=ia
@@ -47,4 +47,5 @@
 #D- For each component, Name of component, Tag of component
 MBG= (pisces, PISCES)
+IOS= (xios, XIOS)
 #========================================================================
 #D-- Executable -
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/DRIVER/pisces.driver
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/DRIVER/pisces.driver	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/DRIVER/pisces.driver	(revision 5535)
@@ -182,11 +182,19 @@
    fi
 
+   if [ X"${pisces_UserChoices_pis}" = X"n" ] ; then
+      echo "DeActivate pisces outputs"
+      IGCM_comp_modifyXmlFile force file_def_nemo-top.xml file33 enabled .FALSE.
+      IGCM_comp_modifyXmlFile force file_def_nemo-top.xml file34 enabled .FALSE.
+      IGCM_comp_modifyXmlFile force file_def_nemo-top.xml file35 enabled .FALSE.
+      IGCM_comp_modifyXmlFile force file_def_nemo-top.xml file36 enabled .FALSE.
+      IGCM_comp_modifyXmlFile force file_def_nemo-top.xml file37 enabled .FALSE.
+   fi
+
    if [ X"${pisces_UserChoices_age}" = X"y" ] ; then
       echo "Activate age tracer"
       TOP_AGE=.TRUE.
-      IGCM_comp_modifyXmlFile force file_def_nemo-pisces.xml file38 enabled .TRUE.
+      IGCM_comp_modifyXmlFile force file_def_nemo-top.xml file38 enabled .TRUE.
    else
       TOP_AGE=.FALSE.
-      IGCM_comp_modifyXmlFile force file_def_nemo-pisces.xml file38 enabled .FALSE.
    fi
 ##
@@ -194,8 +202,7 @@
       echo "Activate CFC11  tracer"
       TOP_CFC11=.TRUE.
-      IGCM_comp_modifyXmlFile force file_def_nemo-pisces.xml file39 enabled .FALSE.
+      IGCM_comp_modifyXmlFile force file_def_nemo-top.xml file39 enabled .FALSE.
    else
       TOP_CFC11=.FALSE.
-      IGCM_comp_modifyXmlFile force file_def_nemo-pisces.xml file39 enabled .FALSE.
    fi
 ##
@@ -203,8 +210,7 @@
       echo "Activate CFC12  tracer"
       TOP_CFC12=.TRUE.
-      IGCM_comp_modifyXmlFile force file_def_nemo-pisces.xml file40 enabled .TRUE.
+      IGCM_comp_modifyXmlFile force file_def_nemo-top.xml file40 enabled .TRUE.
    else
       TOP_CFC12=.FALSE.
-      IGCM_comp_modifyXmlFile force file_def_nemo-pisces.xml file40 enabled .FALSE.
    fi
 ##
@@ -220,9 +226,10 @@
     IGCM_comp_modifyNamelist blocker    namelist_top_cfg     ln_cfc11  ${TOP_CFC11}
     IGCM_comp_modifyNamelist blocker    namelist_top_cfg     ln_cfc12  ${TOP_CFC12}
-    IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  ln_co2int ${LCO2INT}
-    IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  atcco2    ${pisces_UserChoices_AtmCo2}
-    IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  nrdttrc   ${pisces_UserChoices_PisFreq}
-    IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  nn_pisdmp ${OPA_NPDT_YEAR}
-
+    if [ X"${pisces_UserChoices_pis}" = X"y" ] ; then
+       IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  ln_co2int ${LCO2INT}
+       IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  atcco2    ${pisces_UserChoices_AtmCo2}
+       IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  nrdttrc   ${pisces_UserChoices_PisFreq}
+       IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  nn_pisdmp ${OPA_NPDT_YEAR}
+    fi
  
     # Update iodef.xml
@@ -231,13 +238,13 @@
     IGCM_debug_Print 1 ${VT1D_ENABLE}  ${VT5D_ENABLE} ${VT1M_ENABLE} ${VT1Y_ENABLE}
 
-    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-pisces.xml 1d_pis enabled ${VT1D_ENABLE}
-    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-pisces.xml 5d_pis enabled ${VT5D_ENABLE}
-    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-pisces.xml 1m_pis enabled ${VT1M_ENABLE}
-    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-pisces.xml 1y_pis enabled ${VT1Y_ENABLE}
-
-    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-pisces.xml 1d_pis output_level ${pisces_UserChoices_OutputLevel}
-    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-pisces.xml 5d_pis output_level ${pisces_UserChoices_OutputLevel}
-    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-pisces.xml 1m_pis output_level ${pisces_UserChoices_OutputLevel}
-    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-pisces.xml 1y_pis output_level ${pisces_UserChoices_OutputLevel}
+    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-top.xml 1d_pis enabled ${VT1D_ENABLE}
+    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-top.xml 5d_pis enabled ${VT5D_ENABLE}
+    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-top.xml 1m_pis enabled ${VT1M_ENABLE}
+    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-top.xml 1y_pis enabled ${VT1Y_ENABLE}
+
+    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-top.xml 1d_pis output_level ${pisces_UserChoices_OutputLevel}
+    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-top.xml 5d_pis output_level ${pisces_UserChoices_OutputLevel}
+    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-top.xml 1m_pis output_level ${pisces_UserChoices_OutputLevel}
+    IGCM_comp_modifyXmlFile nonblocker file_def_nemo-top.xml 1y_pis output_level ${pisces_UserChoices_OutputLevel}
 
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/ORCA1/namelist_ice_cfg
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/ORCA1/namelist_ice_cfg	(revision 5531)
+++ 	(revision )
@@ -1,161 +1,0 @@
-!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!! SI3 configuration namelist: Overwrites SHARED/namelist_ice_ref
-!!              1 - Generic parameters                 (nampar)
-!!              2 - Ice thickness discretization       (namitd)
-!!              3 - Ice dynamics                       (namdyn)
-!!              4 - Ice ridging/rafting                (namdyn_rdgrft)
-!!              5 - Ice rheology                       (namdyn_rhg)
-!!              6 - Ice advection                      (namdyn_adv)
-!!              7 - Ice surface boundary conditions    (namsbc)
-!!              8 - Ice thermodynamics                 (namthd)
-!!              9 - Ice heat diffusion                 (namthd_zdf)
-!!             10 - Ice lateral melting                (namthd_da)
-!!             11 - Ice growth in open water           (namthd_do)
-!!             12 - Ice salinity                       (namthd_sal)
-!!             13 - Ice melt ponds                     (namthd_pnd)
-!!             14 - Ice initialization                 (namini)
-!!             15 - Ice/snow albedos                   (namalb)
-!!             16 - Ice diagnostics                    (namdia)
-!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!
-!------------------------------------------------------------------------------
-&nampar         !   Generic parameters
-!------------------------------------------------------------------------------
-   cn_icerst_in     = "restart_ice_in"   !  suffix of ice restart name (input)
-   rn_amax_n        =   0.997         !  maximum tolerated ice concentration NH
-   rn_amax_s        =   0.997         !  maximum tolerated ice concentration SH
-/
-!------------------------------------------------------------------------------
-&namitd         !   Ice discretization
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namdyn         !   Ice dynamics
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namdyn_rdgrft  !   Ice ridging/rafting
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namdyn_rhg     !   Ice rheology
-!------------------------------------------------------------------------------
-  ln_rhg_EVP       = .true.          !  EVP rheology
-      ln_aEVP       = .false.         !     adaptive rheology (Kimmritz et al. 2016 & 2017)
-      rn_creepl     =   2.0e-9        !     creep limit [1/s]
-      rn_ecc        =   2.0           !     eccentricity of the elliptical yield curve
-      nn_nevp       =  120            !     number of EVP subcycles
-      rn_relast     =   0.333         !     ratio of elastic timescale to ice time step: Telast = dt_ice * rn_relast
-                                      !        advised value: 1/3 (rn_nevp=120) or 1/9 (rn_nevp=300)
-/
-!------------------------------------------------------------------------------
-&namdyn_adv     !   Ice advection
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namsbc         !   Ice surface boundary conditions
-!------------------------------------------------------------------------------
-   rn_cio           =   5.0e-03       !  ice-ocean drag coefficient (-)
-   nn_snwfra        =   2             !  calculate the fraction of ice covered by snow (for zdf and albedo)
-                                      !     = 0  fraction = 1 (if snow) or 0 (if no snow)
-                                      !     = 1  fraction = 1-exp(-0.2*rhos*hsnw) [MetO formulation]
-                                      !     = 2  fraction = hsnw / (hsnw+0.02)    [CICE formulation]
-   rn_snwblow       =   0.66          !  mesure of snow blowing into the leads
-                                      !     = 1 => no snow blowing, < 1 => some snow blowing
-   ln_cndflx        = .false.         !  Use conduction flux as surface boundary conditions (i.e. for Jules coupling)
-      ln_cndemulate = .false.         !     emulate conduction flux (if not provided in the inputs)
-   nn_qtrice        =  1              !  Solar flux transmitted thru the surface scattering layer:
-                                      !     = 0  Grenfell and Maykut 1977 (depends on cloudiness and is 0 when there is snow)
-                                      !     = 1  Lebrun 2019 (equals 0.3 anytime with different melting/dry snw conductivities)
-/
-!------------------------------------------------------------------------------
-&namthd         !   Ice thermodynamics
-!------------------------------------------------------------------------------
-   ln_icedH         = .true.          !  activate ice thickness change from growing/melting (T) or not (F)
-   ln_icedA         = .true.          !  activate lateral melting param. (T) or not (F)
-   ln_icedO         = .true.          !  activate ice growth in open-water (T) or not (F)
-   ln_icedS         = .true.          !  activate brine drainage (T) or not (F)
-   !
-   ln_leadhfx       = .false.          !  heat in the leads is used to melt sea-ice before warming the ocean
-/
-!------------------------------------------------------------------------------
-&namthd_zdf     !   Ice heat diffusion
-!------------------------------------------------------------------------------
-   rn_cnd_s         =   0.50          !  thermal conductivity of the snow (0.31 W/m/K, Maykut and Untersteiner, 1971)
-                                      !     Obs: 0.1-0.5 (Lecomte et al, JAMES 2013)
-/
-!------------------------------------------------------------------------------
-&namthd_da      !   Ice lateral melting
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd_do      !   Ice growth in open water
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd_sal     !   Ice salinity
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd_pnd     !   Melt ponds
-!------------------------------------------------------------------------------
-   ln_pnd            = .true.         !  activate melt ponds or not
-      ln_pnd_LEV     = .true.         !  level ice melt ponds (from Flocco et al 2007,2010 & Holland et al 2012)
-         rn_apnd_min =   0.15         !     minimum ice fraction that contributes to melt pond. range: 0.0 -- 0.15 ??
-         rn_apnd_max =   0.85         !     maximum ice fraction that contributes to melt pond. range: 0.7 -- 0.85 ??
-      ln_pnd_CST     = .false.        !  constant  melt ponds
-         rn_apnd     =   0.2          !     prescribed pond fraction, at Tsu=0 degC
-         rn_hpnd     =   0.05         !     prescribed pond depth,    at Tsu=0 degC
-      ln_pnd_lids    = .true.         !  frozen lids on top of the ponds (only for ln_pnd_LEV)
-      ln_pnd_alb     = .true.         !  effect of melt ponds on ice albedo
-/
-!------------------------------------------------------------------------------
-&namini         !   Ice initialization
-!------------------------------------------------------------------------------
-   nn_iceini_file   = _AUTO_: DEFAULT=0        !  netcdf file provided for initialization
-   !
-   rn_thres_sst     =   2.0           !  max temp. above Tfreeze with initial ice = (sst - tfreeze)
-   rn_hti_ini_n     =   3.0           !  initial ice thickness       (m), North
-   rn_hti_ini_s     =   1.0           !        "            "             South
-   rn_hts_ini_n     =   0.3           !  initial snow thickness      (m), North
-   rn_hts_ini_s     =   0.3           !        "            "             South
-   rn_ati_ini_n     =   0.9           !  initial ice concentration   (-), North
-   rn_ati_ini_s     =   0.9           !        "            "             South
-   rn_smi_ini_n     =   6.3           !  initial ice salinity     (g/kg), North
-   rn_smi_ini_s     =   6.3           !        "            "             South
-   rn_tmi_ini_n     = 270.            !  initial ice temperature     (K), North
-   rn_tmi_ini_s     = 270.            !        "            "             South
-   rn_tsu_ini_n     = 270.            !  initial surface temperature (K), North
-   rn_tsu_ini_s     = 270.            !        "            "             South
-   rn_tms_ini_n     = 270.            !  initial snw temperature     (K), North
-   rn_tms_ini_s     = 270.            !        "            "             South
-   rn_apd_ini_n     =   0.2           !  initial pond fraction       (-), North
-   rn_apd_ini_s     =   0.2           !        "            "             South
-   rn_hpd_ini_n     =   0.05          !  initial pond depth          (m), North
-   rn_hpd_ini_s     =   0.05          !        "            "             South
-   rn_hld_ini_n     =   0.0           !  initial pond lid depth      (m), North
-   rn_hld_ini_s     =   0.0           !        "            "             South
-   !______!______________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
-   !      !    file name         ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
-   !      !                      !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                  ! pairing  !    filename   !
-   sn_hti = 'Ice_initialization' ,         -12       ,'sithic'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   sn_hts = 'Ice_initialization' ,         -12       ,'snthic'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   sn_ati = 'Ice_initialization' ,         -12       ,'siconc'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   sn_smi = 'Ice_initialization' ,         -12       ,'sisali'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   sn_tmi = 'Ice_initialization' ,         -12       ,'sitemp'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   sn_tsu = 'Ice_initialization' ,         -12       ,'sistem'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   sn_tms = 'NOT USED'           ,         -12       ,'tms'      ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   !      melt ponds (be careful, sn_apd is the pond concentration (not fraction), so it differs from rn_apd)
-   sn_apd = 'NOT USED'           ,         -12       ,'apd'      ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   sn_hpd = 'NOT USED'           ,         -12       ,'hpd'      ,  .false.    , .true. , 'yearly'  , '' , '', ''
-   cn_dir='./'
-/
-!------------------------------------------------------------------------------
-&namalb         !   albedo parameters
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namdia         !   Diagnostics
-!------------------------------------------------------------------------------
-   ln_icediahsb     = .true.         !  output the heat, mass & salt budgets (T) or not (F)
-/
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/ORCA2/namelist_ice_cfg
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/ORCA2/namelist_ice_cfg	(revision 5531)
+++ 	(revision )
@@ -1,87 +1,0 @@
-!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!! SI3 configuration namelist: Overwrites SHARED/namelist_ice_ref
-!!              1 - Generic parameters                 (nampar)
-!!              2 - Ice thickness discretization       (namitd)
-!!              3 - Ice dynamics                       (namdyn)
-!!              4 - Ice ridging/rafting                (namdyn_rdgrft)
-!!              5 - Ice rheology                       (namdyn_rhg)
-!!              6 - Ice advection                      (namdyn_adv)
-!!              7 - Ice surface boundary conditions    (namsbc)
-!!              8 - Ice thermodynamics                 (namthd)
-!!              9 - Ice heat diffusion                 (namthd_zdf)
-!!             10 - Ice lateral melting                (namthd_da)
-!!             11 - Ice growth in open water           (namthd_do)
-!!             12 - Ice salinity                       (namthd_sal)
-!!             13 - Ice melt ponds                     (namthd_pnd)
-!!             14 - Ice initialization                 (namini)
-!!             15 - Ice/snow albedos                   (namalb)
-!!             16 - Ice diagnostics                    (namdia)
-!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!
-!------------------------------------------------------------------------------
-&nampar         !   Generic parameters
-!------------------------------------------------------------------------------
-   cn_icerst_in     = "restart_ice_in"   !  suffix of ice restart name (input)
-/
-!------------------------------------------------------------------------------
-&namitd         !   Ice discretization
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namdyn         !   Ice dynamics
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namdyn_rdgrft  !   Ice ridging/rafting
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namdyn_rhg     !   Ice rheology
-!------------------------------------------------------------------------------
-      ln_aEVP       = .false.          !     adaptive rheology (Kimmritz et al. 2016 & 2017)
-/
-!------------------------------------------------------------------------------
-&namdyn_adv     !   Ice advection
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namsbc         !   Ice surface boundary conditions
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd         !   Ice thermodynamics
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd_zdf     !   Ice heat diffusion
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd_da      !   Ice lateral melting
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd_do      !   Ice growth in open water
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd_sal     !   Ice salinity
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namthd_pnd     !   Melt ponds
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namini         !   Ice initialization
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namalb         !   albedo parameters
-!------------------------------------------------------------------------------
-/
-!------------------------------------------------------------------------------
-&namdia         !   Diagnostics
-!------------------------------------------------------------------------------
-   ln_icediahsb     = .true.         !  output the heat, mass & salt budgets (T) or not (F)
-/
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/namelist_ice_cfg
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/namelist_ice_cfg	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/namelist_ice_cfg	(revision 5535)
@@ -0,0 +1,161 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! SI3 configuration namelist: Overwrites SHARED/namelist_ice_ref
+!!              1 - Generic parameters                 (nampar)
+!!              2 - Ice thickness discretization       (namitd)
+!!              3 - Ice dynamics                       (namdyn)
+!!              4 - Ice ridging/rafting                (namdyn_rdgrft)
+!!              5 - Ice rheology                       (namdyn_rhg)
+!!              6 - Ice advection                      (namdyn_adv)
+!!              7 - Ice surface boundary conditions    (namsbc)
+!!              8 - Ice thermodynamics                 (namthd)
+!!              9 - Ice heat diffusion                 (namthd_zdf)
+!!             10 - Ice lateral melting                (namthd_da)
+!!             11 - Ice growth in open water           (namthd_do)
+!!             12 - Ice salinity                       (namthd_sal)
+!!             13 - Ice melt ponds                     (namthd_pnd)
+!!             14 - Ice initialization                 (namini)
+!!             15 - Ice/snow albedos                   (namalb)
+!!             16 - Ice diagnostics                    (namdia)
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!
+!------------------------------------------------------------------------------
+&nampar         !   Generic parameters
+!------------------------------------------------------------------------------
+   cn_icerst_in     = "restart_ice_in"   !  suffix of ice restart name (input)
+   rn_amax_n        =   0.997         !  maximum tolerated ice concentration NH
+   rn_amax_s        =   0.997         !  maximum tolerated ice concentration SH
+/
+!------------------------------------------------------------------------------
+&namitd         !   Ice discretization
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdyn         !   Ice dynamics
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdyn_rdgrft  !   Ice ridging/rafting
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdyn_rhg     !   Ice rheology
+!------------------------------------------------------------------------------
+  ln_rhg_EVP       = .true.          !  EVP rheology
+      ln_aEVP       = .false.         !     adaptive rheology (Kimmritz et al. 2016 & 2017)
+      rn_creepl     =   2.0e-9        !     creep limit [1/s]
+      rn_ecc        =   2.0           !     eccentricity of the elliptical yield curve
+      nn_nevp       =  120            !     number of EVP subcycles
+      rn_relast     =   0.333         !     ratio of elastic timescale to ice time step: Telast = dt_ice * rn_relast
+                                      !        advised value: 1/3 (rn_nevp=120) or 1/9 (rn_nevp=300)
+/
+!------------------------------------------------------------------------------
+&namdyn_adv     !   Ice advection
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namsbc         !   Ice surface boundary conditions
+!------------------------------------------------------------------------------
+   rn_cio           =   5.0e-03       !  ice-ocean drag coefficient (-)
+   nn_snwfra        =   2             !  calculate the fraction of ice covered by snow (for zdf and albedo)
+                                      !     = 0  fraction = 1 (if snow) or 0 (if no snow)
+                                      !     = 1  fraction = 1-exp(-0.2*rhos*hsnw) [MetO formulation]
+                                      !     = 2  fraction = hsnw / (hsnw+0.02)    [CICE formulation]
+   rn_snwblow       =   0.66          !  mesure of snow blowing into the leads
+                                      !     = 1 => no snow blowing, < 1 => some snow blowing
+   ln_cndflx        = .false.         !  Use conduction flux as surface boundary conditions (i.e. for Jules coupling)
+      ln_cndemulate = .false.         !     emulate conduction flux (if not provided in the inputs)
+   nn_qtrice        =  1              !  Solar flux transmitted thru the surface scattering layer:
+                                      !     = 0  Grenfell and Maykut 1977 (depends on cloudiness and is 0 when there is snow)
+                                      !     = 1  Lebrun 2019 (equals 0.3 anytime with different melting/dry snw conductivities)
+/
+!------------------------------------------------------------------------------
+&namthd         !   Ice thermodynamics
+!------------------------------------------------------------------------------
+   ln_icedH         = .true.          !  activate ice thickness change from growing/melting (T) or not (F)
+   ln_icedA         = .true.          !  activate lateral melting param. (T) or not (F)
+   ln_icedO         = .true.          !  activate ice growth in open-water (T) or not (F)
+   ln_icedS         = .true.          !  activate brine drainage (T) or not (F)
+   !
+   ln_leadhfx       = .false.          !  heat in the leads is used to melt sea-ice before warming the ocean
+/
+!------------------------------------------------------------------------------
+&namthd_zdf     !   Ice heat diffusion
+!------------------------------------------------------------------------------
+   rn_cnd_s         =   0.50          !  thermal conductivity of the snow (0.31 W/m/K, Maykut and Untersteiner, 1971)
+                                      !     Obs: 0.1-0.5 (Lecomte et al, JAMES 2013)
+/
+!------------------------------------------------------------------------------
+&namthd_da      !   Ice lateral melting
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd_do      !   Ice growth in open water
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd_sal     !   Ice salinity
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd_pnd     !   Melt ponds
+!------------------------------------------------------------------------------
+   ln_pnd            = .true.         !  activate melt ponds or not
+      ln_pnd_LEV     = .true.         !  level ice melt ponds (from Flocco et al 2007,2010 & Holland et al 2012)
+         rn_apnd_min =   0.15         !     minimum ice fraction that contributes to melt pond. range: 0.0 -- 0.15 ??
+         rn_apnd_max =   0.85         !     maximum ice fraction that contributes to melt pond. range: 0.7 -- 0.85 ??
+      ln_pnd_CST     = .false.        !  constant  melt ponds
+         rn_apnd     =   0.2          !     prescribed pond fraction, at Tsu=0 degC
+         rn_hpnd     =   0.05         !     prescribed pond depth,    at Tsu=0 degC
+      ln_pnd_lids    = .true.         !  frozen lids on top of the ponds (only for ln_pnd_LEV)
+      ln_pnd_alb     = .true.         !  effect of melt ponds on ice albedo
+/
+!------------------------------------------------------------------------------
+&namini         !   Ice initialization
+!------------------------------------------------------------------------------
+   nn_iceini_file   = _AUTO_: DEFAULT=0        !  netcdf file provided for initialization
+   !
+   rn_thres_sst     =   2.0           !  max temp. above Tfreeze with initial ice = (sst - tfreeze)
+   rn_hti_ini_n     =   3.0           !  initial ice thickness       (m), North
+   rn_hti_ini_s     =   1.0           !        "            "             South
+   rn_hts_ini_n     =   0.3           !  initial snow thickness      (m), North
+   rn_hts_ini_s     =   0.3           !        "            "             South
+   rn_ati_ini_n     =   0.9           !  initial ice concentration   (-), North
+   rn_ati_ini_s     =   0.9           !        "            "             South
+   rn_smi_ini_n     =   6.3           !  initial ice salinity     (g/kg), North
+   rn_smi_ini_s     =   6.3           !        "            "             South
+   rn_tmi_ini_n     = 270.            !  initial ice temperature     (K), North
+   rn_tmi_ini_s     = 270.            !        "            "             South
+   rn_tsu_ini_n     = 270.            !  initial surface temperature (K), North
+   rn_tsu_ini_s     = 270.            !        "            "             South
+   rn_tms_ini_n     = 270.            !  initial snw temperature     (K), North
+   rn_tms_ini_s     = 270.            !        "            "             South
+   rn_apd_ini_n     =   0.2           !  initial pond fraction       (-), North
+   rn_apd_ini_s     =   0.2           !        "            "             South
+   rn_hpd_ini_n     =   0.05          !  initial pond depth          (m), North
+   rn_hpd_ini_s     =   0.05          !        "            "             South
+   rn_hld_ini_n     =   0.0           !  initial pond lid depth      (m), North
+   rn_hld_ini_s     =   0.0           !        "            "             South
+   !______!______________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
+   !      !    file name         ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
+   !      !                      !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                  ! pairing  !    filename   !
+   sn_hti = 'Ice_initialization' ,         -12       ,'sithic'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   sn_hts = 'Ice_initialization' ,         -12       ,'snthic'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   sn_ati = 'Ice_initialization' ,         -12       ,'siconc'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   sn_smi = 'Ice_initialization' ,         -12       ,'sisali'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   sn_tmi = 'Ice_initialization' ,         -12       ,'sitemp'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   sn_tsu = 'Ice_initialization' ,         -12       ,'sistem'   ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   sn_tms = 'NOT USED'           ,         -12       ,'tms'      ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   !      melt ponds (be careful, sn_apd is the pond concentration (not fraction), so it differs from rn_apd)
+   sn_apd = 'NOT USED'           ,         -12       ,'apd'      ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   sn_hpd = 'NOT USED'           ,         -12       ,'hpd'      ,  .false.    , .true. , 'yearly'  , '' , '', ''
+   cn_dir='./'
+/
+!------------------------------------------------------------------------------
+&namalb         !   albedo parameters
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdia         !   Diagnostics
+!------------------------------------------------------------------------------
+   ln_icediahsb     = .true.         !  output the heat, mass & salt budgets (T) or not (F)
+/
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/namelist_top_cfg
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/namelist_top_cfg	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/namelist_top_cfg	(revision 5535)
@@ -0,0 +1,70 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! NEMO/TOP1 :  Configuration namelist : used to overwrite defaults values defined in SHARED/namelist_top_ref
+!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!-----------------------------------------------------------------------
+&namtrc_run      !   run information
+!-----------------------------------------------------------------------
+   ln_rsttr      = _AUTO_
+   nn_rsttr      = _AUTO_
+   ln_top_euler  = .true.
+/
+!-----------------------------------------------------------------------
+&namtrc          !   tracers definition
+!-----------------------------------------------------------------------
+   jp_bgc        =  0
+!
+   ln_pisces     =  .false.
+   ln_my_trc     =  .false.
+   ln_age        =  _AUTO_
+   ln_cfc11      =  _AUTO_ 
+   ln_cfc12      =  _AUTO_
+   ln_c14        =  .false.
+/
+!-----------------------------------------------------------------------
+&namage          !   AGE 
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_dta      !    Initialisation from data input file
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_adv      !   advection scheme for passive tracer                (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_trcadv_fct =  .true.  !  FCT scheme
+      nn_fct_h   =  2               !  =2/4, horizontal 2nd / 4th order 
+      nn_fct_v   =  2               !  =2/4, vertical   2nd / COMPACT 4th order 
+/
+!-----------------------------------------------------------------------
+&namtrc_ldf      !   lateral diffusion scheme for passive tracer        (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_trcldf_tra   = .true.      !  use active tracer setting
+/
+!-----------------------------------------------------------------------
+&namtrc_rad      !  treatment of negative concentrations 
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_snk      !  sedimentation of particles
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_dmp      !   passive tracer newtonian damping   
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_ice      !    Representation of sea ice growth & melt effects
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_trd      !   diagnostics on tracer trends                       ('key_trdtrc')
+!----------------------------------------------------------------------
+/
+!----------------------------------------------------------------------
+&namtrc_bc       !   data for boundary conditions
+!-----------------------------------------------------------------------
+/
+!----------------------------------------------------------------------
+&namtrc_bdy      !   Setup of tracer boundary conditions
+!-----------------------------------------------------------------------
+/
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/context_nemo.xml
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/context_nemo.xml	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/context_nemo.xml	(revision 5535)
@@ -28,5 +28,5 @@
     <file_definition src="./file_def_nemo-oce.xml"/>     <!--  NEMO ocean dynamics      -->
     <file_definition src="./file_def_nemo-ice.xml"/>     <!--  NEMO sea-ice model       -->
-    <file_definition src="./file_def_nemo-pisces.xml"/>  <!--  NEMO ocean biology       -->
+    <file_definition src="./file_def_nemo-top.xml"/>  <!--  NEMO ocean biology       -->
 
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/context_nemo_notop.xml
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/context_nemo_notop.xml	(revision 5531)
+++ 	(revision )
@@ -1,40 +1,0 @@
-<!--
- ============================================================================================== 
-    NEMO context
-============================================================================================== 
--->
-<context id="nemo">
-    <!-- $id$ -->
-    <variable_definition>
-       <!-- Year/Month/Day of time origin for NetCDF files; defaults to 1800-01-01 -->
-       <variable id="ref_year"  type="int">1958</variable>
-       <variable id="ref_month" type="int"> 01 </variable>
-       <variable id="ref_day"   type="int"> 01 </variable>
-       <variable id="rau0"      type="float" > 1026.0 </variable>
-       <variable id="cpocean"   type="float" > 3991.86795711963 </variable>
-       <variable id="convSpsu"  type="float" > 0.99530670233846  </variable>
-       <variable id="rhoic"     type="float" > 917.0 </variable>
-       <variable id="rhosn"     type="float" > 330.0 </variable>
-       <variable id="missval"   type="float" > 1.e20 </variable>
-    </variable_definition>
-
-<!-- Fields definition -->
-    <field_definition src="./field_def_nemo-oce.xml"/>    <!--  NEMO ocean dynamics     -->
-    <field_definition src="./field_def_nemo-ice.xml"/>    <!--  NEMO sea-ice model      -->
-
-<!-- Files definition -->
-    <file_definition src="./file_def_nemo-oce.xml"/>     <!--  NEMO ocean dynamics      -->
-    <file_definition src="./file_def_nemo-ice.xml"/>     <!--  NEMO sea-ice model       -->
-
-
-<!-- Axis definition -->
-    <axis_definition src="./axis_def_nemo.xml"/>
- 
-<!-- Domain definition -->
-    <domain_definition src="./domain_def_nemo.xml"/>
-
-<!-- Grids definition -->
-    <grid_definition   src="./grid_def_nemo.xml"/>
-  
-
-</context>
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/context_nemo_offline.xml
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/context_nemo_offline.xml	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/context_nemo_offline.xml	(revision 5535)
@@ -25,5 +25,5 @@
 
 <!-- Files definition -->
-    <file_definition src="./file_def_nemo-pisces.xml"/>  <!--  NEMO ocean biology       -->
+    <file_definition src="./file_def_nemo-top.xml"/>  <!--  NEMO ocean biology       -->
 
 
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/file_def_nemo-pisces.xml
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/file_def_nemo-pisces.xml	(revision 5531)
+++ 	(revision )
@@ -1,236 +1,0 @@
-    <!-- $id$ -->
-    
-    <!-- 
-
-============================================================================================================
-=                                           output files definition                                        =
-=                                            Define your own files ocean biogeochemistry                                         =
-=                                         put the variables you want...                                    =
-============================================================================================================
-    -->
-    
-    <file_definition type="one_file" name="@expname@_@freq@" sync_freq="1d" min_digits="4" >
-    
-      <file_group id="1ts_pis" output_freq="1ts"  output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
-
-      <file_group id="1h_pis" output_freq="1h"  output_level="10" enabled=".TRUE."/> <!-- 1h files -->
-
-      <file_group id="2h_pis" output_freq="2h"  output_level="10" enabled=".TRUE."/> <!-- 2h files -->
-
-      <file_group id="3h_pis" output_freq="3h"  output_level="10" enabled=".TRUE."/> <!-- 3h files -->     
-
-      <file_group id="4h_pis" output_freq="4h"  output_level="10" enabled=".TRUE."/> <!-- 4h files -->
-
-      <file_group id="6h_pis" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files -->     
-    
-      <file_group id="1d_pis" output_freq="1d"  output_level="_AUTO_" enabled="_AUTO_" >  <!-- 1d files -->   
-
-        <file id="file31" name_suffix="_bioscalar" description="pisces sms variables" >
-          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="2" > tdenit * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="2" > tnfix * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="2" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="2" > tcflxcum * -1. * 12. / 1e15 </field>
-          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="2" > tcexp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="2" > tintpp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="2" > pno3tot * 16. / 122. * 1e6 </field>
-          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="2" > ppo4tot * 1. / 122. * 1e6 </field>
-          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="2" > psiltot * 1e6  </field>
-          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="2" > palktot * 1e6  </field>
-          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="2" > pfertot * 1e9  </field>
-        </file>
-
-      </file_group> 
-
-      <file_group id="5d_pis" output_freq="5d"  output_level="_AUTO_" enabled="_AUTO_" >  <!-- 5d files -->   
-
-       <file id="file32" name_suffix="_bioscalar" description="pisces sms variables" >
-          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="2" > tdenit * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="2" > tnfix * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="2" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="2" > tcflxcum * -1. * 12. / 1e15 </field>
-          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="2" > tcexp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="2" > tintpp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="2" > pno3tot * 16. / 122. * 1e6 </field>
-          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="2" > ppo4tot * 1. / 122. * 1e6 </field>
-          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="2" > psiltot * 1e6  </field>
-          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="2" > palktot * 1e6  </field>
-          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="2" > pfertot * 1e9  </field>
-        </file>
-
-      </file_group> 
-
-	
-      <file_group id="1m_pis" output_freq="1mo" output_level="_AUTO_" enabled="_AUTO_" > <!-- real monthly files -->
-
-
-        <file id="file33" name_suffix="_ptrc_T" description="pisces sms variables" >
-          <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1mo" level="2" > @DIC_e3t / @e3t </field>
-          <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1mo" level="2" > @Alkalini_e3t / @e3t </field>
-          <field field_ref="O2"        name="O2"       operation="average" freq_op="1mo" level="2" > @O2_e3t / @e3t </field>
-          <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1mo" level="2" > @CaCO3_e3t / @e3t </field>
-          <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1mo" level="2" > @PO4_e3t / @e3t </field>
-          <field field_ref="POC"       name="POC"      operation="average" freq_op="1mo" level="2" > @POC_e3t / @e3t </field>
-          <field field_ref="Si"        name="Si"       operation="average" freq_op="1mo" level="2" > @Si_e3t / @e3t </field>
-          <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1mo" level="2" > @PHY_e3t / @e3t </field>
-          <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1mo" level="2" > @ZOO_e3t / @e3t </field>
-          <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1mo" level="2" > @DOC_e3t / @e3t </field>
-          <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1mo" level="2" > @PHY2_e3t / @e3t </field>
-          <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1mo" level="2" > @ZOO2_e3t / @e3t </field>
-          <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1mo" level="2" > @DSi_e3t / @e3t </field>
-          <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1mo" level="2" > @Fer_e3t / @e3t </field>
-          <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1mo" level="2" > @BFe_e3t / @e3t </field>
-          <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1mo" level="2" > @GOC_e3t / @e3t </field>
-          <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1mo" level="2" > @SFe_e3t / @e3t </field>
-          <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1mo" level="2" > @DFe_e3t / @e3t </field>
-          <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1mo" level="2" > @GSi_e3t / @e3t </field>
-          <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1mo" level="2" > @NFe_e3t / @e3t </field>
-          <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1mo" level="2" > @NCHL_e3t / @e3t </field>
-          <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1mo" level="2" > @DCHL_e3t / @e3t </field>
-          <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1mo" level="2" > @NO3_e3t / @e3t </field>
-          <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1mo" level="2" > @NH4_e3t / @e3t </field>
-       </file>
-
-
-
-       <file id="file34" name_suffix="_diad_T" description="additional pisces diagnostics" >
-
-        <field field_ref="PH"         name="PH"       level="2" />
-        <field field_ref="CO3"        name="CO3"      level="2" />
-        <field field_ref="CO3sat"     name="CO3sat"   level="2" />
-        <field field_ref="PAR"        name="PAR"      level="2" />
-        <field field_ref="PCAL"       name="PCAL"     level="2"  />
-        <field field_ref="Cflx"       name="Cflx"     level="2"  />
-        <field field_ref="Oflx"       name="Oflx"     level="2"  />
-        <field field_ref="Dpco2"      name="Dpco2"    level="2"   />
-        <field field_ref="Dpo2"       name="Dpo2"     level="2"  />
-        <field field_ref="Heup"       name="Heup"     level="2" />
-        <field field_ref="Irondep"    name="Irondep"  level="2" />
-        <field field_ref="Ironsed"    name="Ironsed"  level="2" />
-        <field field_ref="Nfix"       name="Nfix"     level="2" />
-        <field field_ref="LNnut"      name="LNnut"    level="2" />
-        <field field_ref="LDnut"      name="LDnut"    level="2" />
-        <field field_ref="LNFe"       name="LNFe"     level="2" />
-        <field field_ref="LDFe"       name="LDFe"     level="2" />
-        <field field_ref="LNlight"    name="LNlight"  level="2"  />
-        <field field_ref="LDlight"    name="LDlight"  level="2"  />
-        <field field_ref="TPP"        name="TPP"      level="2" />
-        <field field_ref="INTPP"      name="INTPP"    level="2" />
-        <field field_ref="INTPNEW"    name="INTPNEW"  level="2"  />
-        <field field_ref="TPNEW"      name="TPNEW"    level="2" />
-        <field field_ref="EPC100"     name="EPC100"   level="2" />
-        <field field_ref="EPFE100"    name="EPFE100"  level="2"  />
-        <field field_ref="EPSI100"    name="EPSI100"  level="2"  />
-        <field field_ref="EPCAL100"   name="EPCAL100" level="2"  />
-        <field field_ref="xfracal"    name="xfracal"  level="2" />
-
-       </file>
-       
-       <file id="file35" name_suffix="_bioscalar" description="pisces sms variables" >
-          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="1" > tdenit * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="1" > tnfix * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="1" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="1" > tcflxcum * -1. * 12. / 1e15 </field>
-          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="1" > tcexp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="1" > tintpp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="1" > pno3tot * 16. / 122. * 1e6 </field>
-          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="1" > ppo4tot * 1. / 122. * 1e6 </field>
-          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="1" > psiltot * 1e6  </field>
-          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="1" > palktot * 1e6  </field>
-          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="1" > pfertot * 1e9  </field>
-        </file>
-
-      </file_group>
-
-
-      <file_group id="2m_pis" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
-      <file_group id="3m_pis" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
-      <file_group id="4m_pis" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
-      <file_group id="6m_pis" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
-
-      <file_group id="1y_pis"  output_freq="1y" output_level="_AUTO_" enabled="_AUTO_"> <!-- real yearly files -->
-
- 
-       <file id="file36" name_suffix="_ptrc_T" description="pisces sms variables" >
-          <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1y" level="1"  > @DIC_e3t / @e3t </field>
-          <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1y" level="1"  > @Alkalini_e3t / @e3t </field>
-          <field field_ref="O2"        name="O2"       operation="average" freq_op="1y" level="1"  > @O2_e3t / @e3t </field>
-          <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1y" level="2" > @CaCO3_e3t / @e3t </field>
-          <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1y" level="1"  > @PO4_e3t / @e3t </field>
-          <field field_ref="POC"       name="POC"      operation="average" freq_op="1y" level="1"  > @POC_e3t / @e3t </field>
-          <field field_ref="Si"        name="Si"       operation="average" freq_op="1y" level="1"  > @Si_e3t / @e3t </field>
-          <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1y" level="2" > @PHY_e3t / @e3t </field>
-          <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1y" level="2" > @ZOO_e3t / @e3t </field>
-          <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1y" level="2" > @DOC_e3t / @e3t </field>
-          <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1y" level="2" > @PHY2_e3t / @e3t </field>
-          <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1y" level="2" > @ZOO2_e3t / @e3t </field>
-          <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1y" level="2" > @DSi_e3t / @e3t </field>
-          <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1y" level="1"  > @Fer_e3t / @e3t </field>
-          <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1y" level="2" > @BFe_e3t / @e3t </field>
-          <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1y" level="1"  > @GOC_e3t / @e3t </field>
-          <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1y" level="2" > @SFe_e3t / @e3t </field>
-          <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1y" level="2" > @DFe_e3t / @e3t </field>
-          <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1y" level="2" > @GSi_e3t / @e3t </field>
-          <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1y" level="2" > @NFe_e3t / @e3t </field>
-          <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1y" level="1"  > @NCHL_e3t / @e3t </field>
-          <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1y" level="1"  > @DCHL_e3t / @e3t </field>
-          <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1y" level="1"  > @NO3_e3t / @e3t </field>
-          <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1y" level="2" > @NH4_e3t / @e3t </field>
-       </file>
-
-      <file id="file37" name_suffix="_diad_T" description="additional pisces diagnostics"  >
-
-        <field field_ref="PH"         name="PH"       level="2" />
-        <field field_ref="CO3"        name="CO3"      level="2" />
-        <field field_ref="CO3sat"     name="CO3sat"   level="2" />
-        <field field_ref="PAR"        name="PAR"      level="2" />
-        <field field_ref="PCAL"       name="PCAL"     level="2"  />
-        <field field_ref="Cflx"       name="Cflx"     level="1"  />
-        <field field_ref="Oflx"       name="Oflx"     level="2"  />
-        <field field_ref="Dpco2"      name="Dpco2"    level="1"   />
-        <field field_ref="Dpo2"       name="Dpo2"     level="2"  />
-        <field field_ref="Heup"       name="Heup"     level="1" />
-        <field field_ref="Irondep"    name="Irondep"  level="2" />
-        <field field_ref="Ironsed"    name="Ironsed"  level="2" />
-        <field field_ref="Nfix"       name="Nfix"     level="1" />
-        <field field_ref="LNnut"      name="LNnut"    level="2" />
-        <field field_ref="LDnut"      name="LDnut"    level="2" />
-        <field field_ref="LNFe"       name="LNFe"     level="2" />
-        <field field_ref="LDFe"       name="LDFe"     level="2" />
-        <field field_ref="LNlight"    name="LNlight"  level="2"  />
-        <field field_ref="LDlight"    name="LDlight"  level="2"  />
-        <field field_ref="TPP"        name="TPP"      level="1" />
-        <field field_ref="INTPP"      name="INTPP"    level="1" />
-        <field field_ref="INTPNEW"    name="INTPNEW"  level="2"  />
-        <field field_ref="TPNEW"      name="TPNEW"    level="2" />
-        <field field_ref="EPC100"     name="EPC100"   level="1" />
-        <field field_ref="EPFE100"    name="EPFE100"  level="1"  />
-        <field field_ref="EPSI100"    name="EPSI100"  level="1"  />
-        <field field_ref="EPCAL100"   name="EPCAL100" level="1"  />
-        <field field_ref="xfracal"    name="xfracal"  level="2" />
-
-        </file>
-
-       <file id="file38" name_suffix="_Age" description="Age tracer" enabled=".FALSE." >
-          <field field_ref="Age"         name="Age"      operation="average" freq_op="1y" level="1"  > @Age_e3t / @e3t </field>
-      </file>
-
-       <file id="file39" name_suffix="_CFC11" description="CFC11 tracer" enabled=".FALSE." >
-          <field field_ref="CFC11"       name="CFC11"    operation="average" freq_op="1y" level="1"  > @CFC11_e3t / @e3t </field>
-          <field field_ref="qtr_CFC11"   name="qtrCFC11"  level="1"   />
-          <field field_ref="qint_CFC11"  name="qintCFC11" level="1"   />
-      </file>
-
-       <file id="file40" name_suffix="_CFC12" description="CFC12 tracer" enabled=".FALSE." >
-          <field field_ref="CFC12"       name="CFC12"    operation="average" freq_op="1y" level="1"  > @CFC12_e3t / @e3t </field>
-          <field field_ref="qtr_CFC12"   name="qtrCFC12"  level="1"   />
-          <field field_ref="qint_CFC12"  name="qintCFC12" level="1"   />
-      </file>
-
-      </file_group>
-
-      <file_group id="2y_pis"  output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
-      <file_group id="5y_pis"  output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
-      <file_group id="10y_pis" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
-
-   </file_definition>
-
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/file_def_nemo-pisces_offline.xml
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/file_def_nemo-pisces_offline.xml	(revision 5531)
+++ 	(revision )
@@ -1,236 +1,0 @@
-    <!-- $id$ -->
-    
-    <!-- 
-
-============================================================================================================
-=                                           output files definition                                        =
-=                                            Define your own files ocean biogeochemistry                                         =
-=                                         put the variables you want...                                    =
-============================================================================================================
-    -->
-    
-    <file_definition type="one_file" name="@expname@_@freq@" sync_freq="1d" min_digits="4" >
-    
-      <file_group id="1ts_pis" output_freq="1ts"  output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
-
-      <file_group id="1h_pis" output_freq="1h"  output_level="10" enabled=".TRUE."/> <!-- 1h files -->
-
-      <file_group id="2h_pis" output_freq="2h"  output_level="10" enabled=".TRUE."/> <!-- 2h files -->
-
-      <file_group id="3h_pis" output_freq="3h"  output_level="10" enabled=".TRUE."/> <!-- 3h files -->     
-
-      <file_group id="4h_pis" output_freq="4h"  output_level="10" enabled=".TRUE."/> <!-- 4h files -->
-
-      <file_group id="6h_pis" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files -->     
-    
-      <file_group id="1d_pis" output_freq="1d"  output_level="_AUTO_" enabled="_AUTO_" >  <!-- 1d files -->   
-
-        <file id="file31" name_suffix="_bioscalar" description="pisces sms variables" >
-          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="2" > tdenit * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="2" > tnfix * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="2" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="2" > tcflxcum * -1. * 12. / 1e15 </field>
-          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="2" > tcexp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="2" > tintpp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="2" > pno3tot * 16. / 122. * 1e6 </field>
-          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="2" > ppo4tot * 1. / 122. * 1e6 </field>
-          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="2" > psiltot * 1e6  </field>
-          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="2" > palktot * 1e6  </field>
-          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="2" > pfertot * 1e9  </field>
-        </file>
-
-      </file_group> 
-
-      <file_group id="5d_pis" output_freq="5d"  output_level="_AUTO_" enabled="_AUTO_" >  <!-- 5d files -->   
-
-       <file id="file32" name_suffix="_bioscalar" description="pisces sms variables" >
-          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="2" > tdenit * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="2" > tnfix * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="2" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="2" > tcflxcum * -1. * 12. / 1e15 </field>
-          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="2" > tcexp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="2" > tintpp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="2" > pno3tot * 16. / 122. * 1e6 </field>
-          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="2" > ppo4tot * 1. / 122. * 1e6 </field>
-          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="2" > psiltot * 1e6  </field>
-          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="2" > palktot * 1e6  </field>
-          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="2" > pfertot * 1e9  </field>
-        </file>
-
-      </file_group> 
-
-	
-      <file_group id="1m_pis" output_freq="1mo" output_level="_AUTO_" enabled="_AUTO_" > <!-- real monthly files -->
-
-
-        <file id="file33" name_suffix="_ptrc_T" description="pisces sms variables" >
-          <field field_ref="DIC"       name="DIC"       level="2" /> 
-          <field field_ref="Alkalini"  name="Alkalini"  level="2" /> 
-          <field field_ref="O2"        name="O2"        level="2" /> 
-          <field field_ref="CaCO3"     name="CaCO3"     level="2" /> 
-          <field field_ref="PO4"       name="PO4"       level="2" /> 
-          <field field_ref="POC"       name="POC"       level="2" /> 
-          <field field_ref="Si"        name="Si"        level="2" /> 
-          <field field_ref="PHY"       name="PHY"       level="2" /> 
-          <field field_ref="ZOO"       name="ZOO"       level="2" /> 
-          <field field_ref="DOC"       name="DOC"       level="2" /> 
-          <field field_ref="PHY2"      name="PHY2"      level="2" /> 
-          <field field_ref="ZOO2"      name="ZOO2"      level="2" /> 
-          <field field_ref="DSi"       name="DSi"       level="2" /> 
-          <field field_ref="Fer"       name="Fer"       level="2" /> 
-          <field field_ref="BFe"       name="BFe"       level="2" /> 
-          <field field_ref="GOC"       name="GOC"       level="2" /> 
-          <field field_ref="SFe"       name="SFe"       level="2" /> 
-          <field field_ref="DFe"       name="DFe"       level="2" /> 
-          <field field_ref="GSi"       name="GSi"       level="2" /> 
-          <field field_ref="NFe"       name="NFe"       level="2" /> 
-          <field field_ref="NCHL"      name="NCHL"      level="2" /> 
-          <field field_ref="DCHL"      name="DCHL"      level="2" />
-          <field field_ref="NO3"       name="NO3"       level="2" /> 
-          <field field_ref="NH4"       name="NH4"       level="2" /> 
-       </file>
-
-
-
-       <file id="file34" name_suffix="_diad_T" description="additional pisces diagnostics" >
-
-        <field field_ref="PH"         name="PH"       level="2" />
-        <field field_ref="CO3"        name="CO3"      level="2" />
-        <field field_ref="CO3sat"     name="CO3sat"   level="2" />
-        <field field_ref="PAR"        name="PAR"      level="2" />
-        <field field_ref="PCAL"       name="PCAL"     level="2"  />
-        <field field_ref="Cflx"       name="Cflx"     level="2"  />
-        <field field_ref="Oflx"       name="Oflx"     level="2"  />
-        <field field_ref="Dpco2"      name="Dpco2"    level="2"   />
-        <field field_ref="Dpo2"       name="Dpo2"     level="2"  />
-        <field field_ref="Heup"       name="Heup"     level="2" />
-        <field field_ref="Irondep"    name="Irondep"  level="2" />
-        <field field_ref="Ironsed"    name="Ironsed"  level="2" />
-        <field field_ref="Nfix"       name="Nfix"     level="2" />
-        <field field_ref="LNnut"      name="LNnut"    level="2" />
-        <field field_ref="LDnut"      name="LDnut"    level="2" />
-        <field field_ref="LNFe"       name="LNFe"     level="2" />
-        <field field_ref="LDFe"       name="LDFe"     level="2" />
-        <field field_ref="LNlight"    name="LNlight"  level="2"  />
-        <field field_ref="LDlight"    name="LDlight"  level="2"  />
-        <field field_ref="TPP"        name="TPP"      level="2" />
-        <field field_ref="INTPP"      name="INTPP"    level="2" />
-        <field field_ref="INTPNEW"    name="INTPNEW"  level="2"  />
-        <field field_ref="TPNEW"      name="TPNEW"    level="2" />
-        <field field_ref="EPC100"     name="EPC100"   level="2" />
-        <field field_ref="EPFE100"    name="EPFE100"  level="2"  />
-        <field field_ref="EPSI100"    name="EPSI100"  level="2"  />
-        <field field_ref="EPCAL100"   name="EPCAL100" level="2"  />
-        <field field_ref="xfracal"    name="xfracal"  level="2" />
-
-       </file>
-       
-       <file id="file35" name_suffix="_bioscalar" description="pisces sms variables" >
-          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="1" > tdenit * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="1" > tnfix * 14. * 86400. * 365. / 1e12 </field>
-          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="1" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="1" > tcflxcum * -1. * 12. / 1e15 </field>
-          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="1" > tcexp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="1" > tintpp * 12. * 86400. * 365. / 1e15 </field>
-          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="1" > pno3tot * 16. / 122. * 1e6 </field>
-          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="1" > ppo4tot * 1. / 122. * 1e6 </field>
-          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="1" > psiltot * 1e6  </field>
-          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="1" > palktot * 1e6  </field>
-          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="1" > pfertot * 1e9  </field>
-        </file>
-
-      </file_group>
-
-
-      <file_group id="2m_pis" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
-      <file_group id="3m_pis" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
-      <file_group id="4m_pis" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
-      <file_group id="6m_pis" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
-
-      <file_group id="1y_pis"  output_freq="1y" output_level="_AUTO_" enabled="_AUTO_"> <!-- real yearly files -->
-
- 
-       <file id="file36" name_suffix="_ptrc_T" description="pisces sms variables" >
-          <field field_ref="DIC"       name="DIC"       level="1" /> 
-          <field field_ref="Alkalini"  name="Alkalini"  level="1" /> 
-          <field field_ref="O2"        name="O2"        level="1" /> 
-          <field field_ref="CaCO3"     name="CaCO3"     level="2" /> 
-          <field field_ref="PO4"       name="PO4"       level="1" /> 
-          <field field_ref="POC"       name="POC"       level="1" /> 
-          <field field_ref="Si"        name="Si"        level="1" /> 
-          <field field_ref="PHY"       name="PHY"       level="2" /> 
-          <field field_ref="ZOO"       name="ZOO"       level="2" /> 
-          <field field_ref="DOC"       name="DOC"       level="2" /> 
-          <field field_ref="PHY2"      name="PHY2"      level="2" /> 
-          <field field_ref="ZOO2"      name="ZOO2"      level="2" /> 
-          <field field_ref="DSi"       name="DSi"       level="2" /> 
-          <field field_ref="Fer"       name="Fer"       level="1" /> 
-          <field field_ref="BFe"       name="BFe"       level="2" /> 
-          <field field_ref="GOC"       name="GOC"       level="1" /> 
-          <field field_ref="SFe"       name="SFe"       level="2" /> 
-          <field field_ref="DFe"       name="DFe"       level="2" /> 
-          <field field_ref="GSi"       name="GSi"       level="2" /> 
-          <field field_ref="NFe"       name="NFe"       level="2" /> 
-          <field field_ref="NCHL"      name="NCHL"      level="1" /> 
-          <field field_ref="DCHL"      name="DCHL"      level="1" /> 
-          <field field_ref="NO3"       name="NO3"       level="1" /> 
-          <field field_ref="NH4"       name="NH4"       level="2" /> 
-       </file>
-
-      <file id="file37" name_suffix="_diad_T" description="additional pisces diagnostics"  >
-
-        <field field_ref="PH"         name="PH"       level="2" />
-        <field field_ref="CO3"        name="CO3"      level="2" />
-        <field field_ref="CO3sat"     name="CO3sat"   level="2" />
-        <field field_ref="PAR"        name="PAR"      level="2" />
-        <field field_ref="PCAL"       name="PCAL"     level="2"  />
-        <field field_ref="Cflx"       name="Cflx"     level="1"  />
-        <field field_ref="Oflx"       name="Oflx"     level="2"  />
-        <field field_ref="Dpco2"      name="Dpco2"    level="1"   />
-        <field field_ref="Dpo2"       name="Dpo2"     level="2"  />
-        <field field_ref="Heup"       name="Heup"     level="1" />
-        <field field_ref="Irondep"    name="Irondep"  level="2" />
-        <field field_ref="Ironsed"    name="Ironsed"  level="2" />
-        <field field_ref="Nfix"       name="Nfix"     level="1" />
-        <field field_ref="LNnut"      name="LNnut"    level="2" />
-        <field field_ref="LDnut"      name="LDnut"    level="2" />
-        <field field_ref="LNFe"       name="LNFe"     level="2" />
-        <field field_ref="LDFe"       name="LDFe"     level="2" />
-        <field field_ref="LNlight"    name="LNlight"  level="2"  />
-        <field field_ref="LDlight"    name="LDlight"  level="2"  />
-        <field field_ref="TPP"        name="TPP"      level="1" />
-        <field field_ref="INTPP"      name="INTPP"    level="1" />
-        <field field_ref="INTPNEW"    name="INTPNEW"  level="2"  />
-        <field field_ref="TPNEW"      name="TPNEW"    level="2" />
-        <field field_ref="EPC100"     name="EPC100"   level="1" />
-        <field field_ref="EPFE100"    name="EPFE100"  level="1"  />
-        <field field_ref="EPSI100"    name="EPSI100"  level="1"  />
-        <field field_ref="EPCAL100"   name="EPCAL100" level="1"  />
-        <field field_ref="xfracal"    name="xfracal"  level="2" />
-
-        </file>
-
-       <file id="file38" name_suffix="_Age" description="Age tracer" enabled=".FALSE." >
-          <field field_ref="Age"         name="Age"       level="1"  /> 
-      </file>
-
-       <file id="file39" name_suffix="_CFC11" description="CFC11 tracer" enabled=".FALSE." >
-          <field field_ref="CFC11"       name="CFC11"     level="1"  /> 
-          <field field_ref="qtr_CFC11"   name="qtrCFC11"  level="1"  />
-          <field field_ref="qint_CFC11"  name="qintCFC11" level="1"  />
-      </file>
-
-       <file id="file40" name_suffix="_CFC12" description="CFC12 tracer" enabled=".FALSE." >
-          <field field_ref="CFC12"       name="CFC12"     level="1"  /> 
-          <field field_ref="qtr_CFC12"   name="qtrCFC12"  level="1"  />
-          <field field_ref="qint_CFC12"  name="qintCFC12" level="1"  />
-      </file>
-
-      </file_group>
-
-      <file_group id="2y_pis"  output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
-      <file_group id="5y_pis"  output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
-      <file_group id="10y_pis" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
-
-   </file_definition>
-
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/file_def_nemo-top.xml
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/file_def_nemo-top.xml	(revision 5535)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/XML/file_def_nemo-top.xml	(revision 5535)
@@ -0,0 +1,239 @@
+    <!-- $id$ -->
+    
+    <!-- 
+
+============================================================================================================
+=                                           output files definition                                        =
+=                                            Define your own files ocean biogeochemistry                                         =
+=                                         put the variables you want...                                    =
+============================================================================================================
+    -->
+    
+    <file_definition type="one_file" name="@expname@_@freq@" sync_freq="1d" min_digits="4" >
+    
+      <file_group id="1ts_pis" output_freq="1ts"  output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
+
+      <file_group id="1h_pis" output_freq="1h"  output_level="10" enabled=".TRUE."/> <!-- 1h files -->
+
+      <file_group id="2h_pis" output_freq="2h"  output_level="10" enabled=".TRUE."/> <!-- 2h files -->
+
+      <file_group id="3h_pis" output_freq="3h"  output_level="10" enabled=".TRUE."/> <!-- 3h files -->     
+
+      <file_group id="4h_pis" output_freq="4h"  output_level="10" enabled=".TRUE."/> <!-- 4h files -->
+
+      <file_group id="6h_pis" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files -->     
+    
+      <file_group id="1d_pis" output_freq="1d"  output_level="_AUTO_" enabled="_AUTO_" enabled=".FALSE." >  <!-- 1d files -->   
+
+        <file id="file31" name_suffix="_bioscalar" description="pisces sms variables" >
+          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="2" > tdenit * 14. * 86400. * 365. / 1e12 </field>
+          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="2" > tnfix * 14. * 86400. * 365. / 1e12 </field>
+          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="2" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="2" > tcflxcum * -1. * 12. / 1e15 </field>
+          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="2" > tcexp * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="2" > tintpp * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="2" > pno3tot * 16. / 122. * 1e6 </field>
+          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="2" > ppo4tot * 1. / 122. * 1e6 </field>
+          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="2" > psiltot * 1e6  </field>
+          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="2" > palktot * 1e6  </field>
+          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="2" > pfertot * 1e9  </field>
+        </file>
+
+      </file_group> 
+
+      <file_group id="5d_pis" output_freq="5d"  output_level="_AUTO_" enabled="_AUTO_" enabled=".FALSE." >  <!-- 5d files -->   
+
+       <file id="file32" name_suffix="_bioscalar" description="pisces sms variables" >
+          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="2" > tdenit * 14. * 86400. * 365. / 1e12 </field>
+          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="2" > tnfix * 14. * 86400. * 365. / 1e12 </field>
+          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="2" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="2" > tcflxcum * -1. * 12. / 1e15 </field>
+          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="2" > tcexp * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="2" > tintpp * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="2" > pno3tot * 16. / 122. * 1e6 </field>
+          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="2" > ppo4tot * 1. / 122. * 1e6 </field>
+          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="2" > psiltot * 1e6  </field>
+          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="2" > palktot * 1e6  </field>
+          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="2" > pfertot * 1e9  </field>
+        </file>
+
+      </file_group> 
+
+	
+      <file_group id="1m_pis" output_freq="1mo" output_level="_AUTO_" enabled="_AUTO_" > <!-- real monthly files -->
+
+
+        <file id="file33" name_suffix="_ptrc_T" description="pisces sms variables" enabled=".TRUE." >
+          <field field_ref="e3t"       name="E3T"      long_name="T-cell thickness" />
+          <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1mo" level="2" > @DIC_e3t / @e3t </field>
+          <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1mo" level="2" > @Alkalini_e3t / @e3t </field>
+          <field field_ref="O2"        name="O2"       operation="average" freq_op="1mo" level="2" > @O2_e3t / @e3t </field>
+          <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1mo" level="2" > @CaCO3_e3t / @e3t </field>
+          <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1mo" level="2" > @PO4_e3t / @e3t </field>
+          <field field_ref="POC"       name="POC"      operation="average" freq_op="1mo" level="2" > @POC_e3t / @e3t </field>
+          <field field_ref="Si"        name="Si"       operation="average" freq_op="1mo" level="2" > @Si_e3t / @e3t </field>
+          <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1mo" level="2" > @PHY_e3t / @e3t </field>
+          <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1mo" level="2" > @ZOO_e3t / @e3t </field>
+          <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1mo" level="2" > @DOC_e3t / @e3t </field>
+          <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1mo" level="2" > @PHY2_e3t / @e3t </field>
+          <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1mo" level="2" > @ZOO2_e3t / @e3t </field>
+          <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1mo" level="2" > @DSi_e3t / @e3t </field>
+          <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1mo" level="2" > @Fer_e3t / @e3t </field>
+          <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1mo" level="2" > @BFe_e3t / @e3t </field>
+          <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1mo" level="2" > @GOC_e3t / @e3t </field>
+          <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1mo" level="2" > @SFe_e3t / @e3t </field>
+          <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1mo" level="2" > @DFe_e3t / @e3t </field>
+          <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1mo" level="2" > @GSi_e3t / @e3t </field>
+          <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1mo" level="2" > @NFe_e3t / @e3t </field>
+          <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1mo" level="2" > @NCHL_e3t / @e3t </field>
+          <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1mo" level="2" > @DCHL_e3t / @e3t </field>
+          <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1mo" level="2" > @NO3_e3t / @e3t </field>
+          <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1mo" level="2" > @NH4_e3t / @e3t </field>
+       </file>
+
+
+
+       <file id="file34" name_suffix="_diad_T" description="additional pisces diagnostics" enabled=".TRUE." >
+
+        <field field_ref="PH"         name="PH"       level="2" />
+        <field field_ref="CO3"        name="CO3"      level="2" />
+        <field field_ref="CO3sat"     name="CO3sat"   level="2" />
+        <field field_ref="PAR"        name="PAR"      level="2" />
+        <field field_ref="PCAL"       name="PCAL"     level="2"  />
+        <field field_ref="Cflx"       name="Cflx"     level="2"  />
+        <field field_ref="Oflx"       name="Oflx"     level="2"  />
+        <field field_ref="Dpco2"      name="Dpco2"    level="2"   />
+        <field field_ref="Dpo2"       name="Dpo2"     level="2"  />
+        <field field_ref="Heup"       name="Heup"     level="2" />
+        <field field_ref="Irondep"    name="Irondep"  level="2" />
+        <field field_ref="Ironsed"    name="Ironsed"  level="2" />
+        <field field_ref="Nfix"       name="Nfix"     level="2" />
+        <field field_ref="LNnut"      name="LNnut"    level="2" />
+        <field field_ref="LDnut"      name="LDnut"    level="2" />
+        <field field_ref="LNFe"       name="LNFe"     level="2" />
+        <field field_ref="LDFe"       name="LDFe"     level="2" />
+        <field field_ref="LNlight"    name="LNlight"  level="2"  />
+        <field field_ref="LDlight"    name="LDlight"  level="2"  />
+        <field field_ref="TPP"        name="TPP"      level="2" />
+        <field field_ref="INTPP"      name="INTPP"    level="2" />
+        <field field_ref="INTPNEW"    name="INTPNEW"  level="2"  />
+        <field field_ref="TPNEW"      name="TPNEW"    level="2" />
+        <field field_ref="EPC100"     name="EPC100"   level="2" />
+        <field field_ref="EPFE100"    name="EPFE100"  level="2"  />
+        <field field_ref="EPSI100"    name="EPSI100"  level="2"  />
+        <field field_ref="EPCAL100"   name="EPCAL100" level="2"  />
+        <field field_ref="xfracal"    name="xfracal"  level="2" />
+
+       </file>
+       
+       <file id="file35" name_suffix="_bioscalar" description="pisces sms variables" enabled=".TRUE." >
+          <field field_ref="tdenit"   name="tdenit"    unit="TgN/yr" operation="instant" level="1" > tdenit * 14. * 86400. * 365. / 1e12 </field>
+          <field field_ref="tnfix"    name="tnfix"     unit="TgN/yr" operation="instant" level="1" > tnfix * 14. * 86400. * 365. / 1e12 </field>
+          <field field_ref="tcflx"    name="tcflx"     unit="PgC/yr" operation="instant" level="1" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="tcflxcum" name="tcflxcum"  unit="PgC"    operation="instant" level="1" > tcflxcum * -1. * 12. / 1e15 </field>
+          <field field_ref="tcexp"    name="tcexp"     unit="PgC/yr" operation="instant" level="1" > tcexp * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="tintpp"   name="tintpp"    unit="PgC/yr" operation="instant" level="1" > tintpp * 12. * 86400. * 365. / 1e15 </field>
+          <field field_ref="pno3tot"  name="pno3tot"   unit="umolN"  operation="instant" level="1" > pno3tot * 16. / 122. * 1e6 </field>
+          <field field_ref="ppo4tot"  name="ppo4tot"   unit="umolP"  operation="instant" level="1" > ppo4tot * 1. / 122. * 1e6 </field>
+          <field field_ref="psiltot"  name="psiltot"   unit="umolC"  operation="instant" level="1" > psiltot * 1e6  </field>
+          <field field_ref="palktot"  name="palktot"   unit="umolC"  operation="instant" level="1" > palktot * 1e6  </field>
+          <field field_ref="pfertot"  name="pfertot"   unit="nmolFe" operation="instant" level="1" > pfertot * 1e9  </field>
+        </file>
+
+      </file_group>
+
+
+      <file_group id="2m_pis" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
+      <file_group id="3m_pis" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
+      <file_group id="4m_pis" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
+      <file_group id="6m_pis" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
+
+      <file_group id="1y_pis"  output_freq="1y" output_level="_AUTO_" enabled="_AUTO_"> <!-- real yearly files -->
+
+       <file id="file36" name_suffix="_ptrc_T" description="pisces sms variables" enabled=".TRUE." >
+          <field field_ref="e3t"       name="E3T"      long_name="T-cell thickness" />
+          <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1y" level="1"  > @DIC_e3t / @e3t </field>
+          <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1y" level="1"  > @Alkalini_e3t / @e3t </field>
+          <field field_ref="O2"        name="O2"       operation="average" freq_op="1y" level="1"  > @O2_e3t / @e3t </field>
+          <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1y" level="2" > @CaCO3_e3t / @e3t </field>
+          <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1y" level="1"  > @PO4_e3t / @e3t </field>
+          <field field_ref="POC"       name="POC"      operation="average" freq_op="1y" level="1"  > @POC_e3t / @e3t </field>
+          <field field_ref="Si"        name="Si"       operation="average" freq_op="1y" level="1"  > @Si_e3t / @e3t </field>
+          <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1y" level="2" > @PHY_e3t / @e3t </field>
+          <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1y" level="2" > @ZOO_e3t / @e3t </field>
+          <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1y" level="2" > @DOC_e3t / @e3t </field>
+          <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1y" level="2" > @PHY2_e3t / @e3t </field>
+          <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1y" level="2" > @ZOO2_e3t / @e3t </field>
+          <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1y" level="2" > @DSi_e3t / @e3t </field>
+          <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1y" level="1"  > @Fer_e3t / @e3t </field>
+          <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1y" level="2" > @BFe_e3t / @e3t </field>
+          <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1y" level="1"  > @GOC_e3t / @e3t </field>
+          <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1y" level="2" > @SFe_e3t / @e3t </field>
+          <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1y" level="2" > @DFe_e3t / @e3t </field>
+          <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1y" level="2" > @GSi_e3t / @e3t </field>
+          <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1y" level="2" > @NFe_e3t / @e3t </field>
+          <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1y" level="1"  > @NCHL_e3t / @e3t </field>
+          <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1y" level="1"  > @DCHL_e3t / @e3t </field>
+          <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1y" level="1"  > @NO3_e3t / @e3t </field>
+          <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1y" level="2" > @NH4_e3t / @e3t </field>
+       </file>
+
+      <file id="file37" name_suffix="_diad_T" description="additional pisces diagnostics"  enabled=".TRUE." >
+
+        <field field_ref="PH"         name="PH"       level="2" />
+        <field field_ref="CO3"        name="CO3"      level="2" />
+        <field field_ref="CO3sat"     name="CO3sat"   level="2" />
+        <field field_ref="PAR"        name="PAR"      level="2" />
+        <field field_ref="PCAL"       name="PCAL"     level="2"  />
+        <field field_ref="Cflx"       name="Cflx"     level="1"  />
+        <field field_ref="Oflx"       name="Oflx"     level="2"  />
+        <field field_ref="Dpco2"      name="Dpco2"    level="1"   />
+        <field field_ref="Dpo2"       name="Dpo2"     level="2"  />
+        <field field_ref="Heup"       name="Heup"     level="1" />
+        <field field_ref="Irondep"    name="Irondep"  level="2" />
+        <field field_ref="Ironsed"    name="Ironsed"  level="2" />
+        <field field_ref="Nfix"       name="Nfix"     level="1" />
+        <field field_ref="LNnut"      name="LNnut"    level="2" />
+        <field field_ref="LDnut"      name="LDnut"    level="2" />
+        <field field_ref="LNFe"       name="LNFe"     level="2" />
+        <field field_ref="LDFe"       name="LDFe"     level="2" />
+        <field field_ref="LNlight"    name="LNlight"  level="2"  />
+        <field field_ref="LDlight"    name="LDlight"  level="2"  />
+        <field field_ref="TPP"        name="TPP"      level="1" />
+        <field field_ref="INTPP"      name="INTPP"    level="1" />
+        <field field_ref="INTPNEW"    name="INTPNEW"  level="2"  />
+        <field field_ref="TPNEW"      name="TPNEW"    level="2" />
+        <field field_ref="EPC100"     name="EPC100"   level="1" />
+        <field field_ref="EPFE100"    name="EPFE100"  level="1"  />
+        <field field_ref="EPSI100"    name="EPSI100"  level="1"  />
+        <field field_ref="EPCAL100"   name="EPCAL100" level="1"  />
+        <field field_ref="xfracal"    name="xfracal"  level="2" />
+
+        </file>
+
+       <file id="file38" name_suffix="_Age" description="Age tracer" enabled=".FALSE." >
+          <field field_ref="e3t"       name="E3T"      long_name="T-cell thickness" />
+          <field field_ref="Age"         name="Age"      operation="average" freq_op="1y" level="1"  > @Age_e3t / @e3t </field>
+      </file>
+
+       <file id="file39" name_suffix="_CFC11" description="CFC11 tracer" enabled=".FALSE." >
+          <field field_ref="e3t"       name="E3T"      long_name="T-cell thickness" />
+          <field field_ref="CFC11"       name="CFC11"    operation="average" freq_op="1y" level="1"  > @CFC11_e3t / @e3t </field>
+          <field field_ref="qtr_CFC11"   name="qtrCFC11"  level="1"   />
+          <field field_ref="qint_CFC11"  name="qintCFC11" level="1"   />
+      </file>
+
+       <file id="file40" name_suffix="_CFC12" description="CFC12 tracer" enabled=".FALSE." >
+          <field field_ref="CFC12"       name="CFC12"    operation="average" freq_op="1y" level="1"  > @CFC12_e3t / @e3t </field>
+          <field field_ref="qtr_CFC12"   name="qtrCFC12"  level="1"   />
+          <field field_ref="qint_CFC12"  name="qintCFC12" level="1"   />
+      </file>
+
+      </file_group>
+
+      <file_group id="2y_pis"  output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
+      <file_group id="5y_pis"  output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
+      <file_group id="10y_pis" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
+
+   </file_definition>
+
Index: CONFIG/UNIFORM/v6/NEMO_v6.5/compile_nemo.sh
===================================================================
--- CONFIG/UNIFORM/v6/NEMO_v6.5/compile_nemo.sh	(revision 5531)
+++ CONFIG/UNIFORM/v6/NEMO_v6.5/compile_nemo.sh	(revision 5535)
@@ -72,5 +72,5 @@
 
 Example 6: Full recompilation in debug mode
-./compile_ipslcm6.sh OFFLINE -debug -full
+./compile_nemo.sh OFFLINE -debug -full
 
 end_help
