Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/AA_make
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/AA_make	(revision 3106)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/AA_make	(revision 3107)
@@ -8,5 +8,5 @@
 
 all : 
-	if [ -s ./.resol ] ; then $(M_K) `head -1 .resol |cut -c 8-` ; else $(M_K) LMD144142-L79 ; fi
+	if [ -s ./.resol ] ; then $(M_K) `head -1 .resol |cut -c 8-` ; else $(M_K) LMD9695-L79 ; fi
 
 LMD4443 : libioipsl xios liborchidee lmdz44x43x19 verif	
@@ -101,5 +101,5 @@
 lmdz: ../../modeles/LMDZ
 	(cd ../../modeles/LMDZ; ./makelmdz_fcm -d $(RESOL_LMDZ) -prod -arch $(FCM_ARCH) -j 8 ce0l ; mv bin/ce0l_$(RESOL_LMDZ)_phylmd_seq.e ../../bin/create_etat0_limit.e ; )
-	(cd ../../modeles/LMDZ; ./makelmdz_fcm -d $(RESOL_LMDZ) -prod -mem -cosp true -v true -parallel mpi_omp -arch $(FCM_ARCH) -j 8 -io xios -rrtm true gcm ; mv bin/gcm_$(RESOL_LMDZ)_phylmd_para_mem_orch.e ../../bin/gcm.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -d $(RESOL_LMDZ) -prod -mem -cosp false -v true -parallel mpi_omp -arch $(FCM_ARCH) -j 8 -io xios -rrtm true -strataer true gcm ; mv bin/gcm_$(RESOL_LMDZ)_phylmd_para_mem_orch.e ../../bin/gcm.e ; )
 
 
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/lmdz.card	(revision 3107)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/lmdz.card	(revision 3107)
@@ -0,0 +1,225 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Physics package to use :
+# LMDZ_Physics=APrrtm for standard/old physics(defalut) with RRTM activated
+# LMDZ_Physics=NPv3.2 for an early version of the new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later
+# LMDZ_Physics=NPv5.67 for new physics to be used with LMDZ5/testing revision 2546 or later
+# LMDZ_Physics=NPv5.70 for new physics to be used with LMDZ5/testing revision 2595 or later
+# LMDZ_Physics=NPv5.80bz0 for new physics to be used with LMDZ5/trunk revision 2699 or later
+LMDZ_Physics=APrrtm
+
+# Set strataer configuration: type_trac=coeg 
+LMDZ_strataer=y
+
+# Set ConfType to choose parameters for aerosols, solar and green house gazes.
+# The parameter file PARAM/config.def_$ConfType will be used.
+# ConfType=preind/actuel/annuel
+ConfType=actuel
+
+# Manage radiative aerosol effect and ozone
+flag_aerosol=6
+ok_ade=y
+ok_aie=y
+aerosol_couple=n
+read_climoz=1
+ok_cdnc=y
+
+# ByPass_hgardfou_teta=y : modify teta_ parameters for following CumulPeriod only
+ByPass_hgardfou_teta=n
+
+# ByPass_hgardfou_mats=y : set parameter purmats=y for following CumulPeriod only
+ByPass_hgardfou_mats=n
+
+# Set OutLevel to choose the level of output for LMDZ
+# OutLevel=low/medium/high
+OutLevel=low
+
+# Set COSP activation and output frequency (monthly, daily, HF) = y/n
+LMDZ_COSP_OK=n
+LMDZ_COSP_monthly=n
+LMDZ_COSP_daily=n
+LMDZ_COSP_hf=n
+
+# Set NMC output frequency (monthly, daily, HF) = y/n
+LMDZ_NMC_monthly=y
+LMDZ_NMC_daily=n
+LMDZ_NMC_hf=n
+
+# Nugding : ok_guide=y/n
+# If ok_guide=y, add nudging files(u.nc, v.nc, hur.nc,...) in BoundaryFiles section below.
+ok_guide=n
+
+[InitialStateFiles]
+List=	(${R_IN}/ATM/IPSLCM6/eORCA1.2xLMD${RESOL_ATM_XY}/start_eORCA1.2xLMD${RESOL_ATM_3D}.nc, start.nc),\
+        (${R_IN}/ATM/IPSLCM6/eORCA1.2xLMD${RESOL_ATM_XY}/startphy_eORCA1.2xLMD${RESOL_ATM_3D}.nc, startphy.nc) 
+
+[BoundaryFiles]
+List=()
+ListNonDel= (${R_IN}/ATM/LIMIT/AMIP.v20161020/interpol/${RESOL_ATM_XY}_eORCA1.2_360d/limit_1979_2008_clim.nc, limit.nc),\
+            (${R_IN}/ATM/OZONE/UReading_2016/2D_14Fields/${RESOL_ATM_3D}/climoz_LMDZ_1979_2008_clim.nc, climoz_LMDZ.nc),\
+            (${R_IN}/ATM/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_1995_v5.nc, aerosols1980.nc),\
+            (${R_IN}/ATM/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_1860_v5.nc, aerosols.nat.nc),\
+            (${R_IN}/ATM/SOLAR/CMIP6/v3.1/Control/solarforcing_pdControl_6bands_ave_1980-2000_360days.nc, solarforcing.nc),\
+            (${R_IN}/ATM/STRATAERO/Climato_OCS_SO2/${RESOL_ATM_XY}/v1/ocs_so2_annual_lmdz.nc, .)
+
+[SmoothFiles]
+List=   ()
+
+[ParametersFiles]
+List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \
+        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY}_${LMDZ_Physics}, gcm.def),\
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \
+        (${MODIPSL}/modeles/LMDZ/DefLists/cosp_input_nl.txt, .),            \
+        (${MODIPSL}/modeles/LMDZ/DefLists/cosp_output_nl.txt, .),           \
+        (${SUBMIT_DIR}/PARAM/config.def_${ConfType},  config.def),          \
+        (${SUBMIT_DIR}/PARAM/guide.def, .),                                 \
+        (${SUBMIT_DIR}/PARAM/run.def, .),                                   \
+        (${SUBMIT_DIR}/PARAM/traceur.def, .),                               \
+        (${SUBMIT_DIR}/PARAM/iodef.xml, . ),                                \
+        (${MODIPSL}/modeles/LMDZ/DefLists/context_lmdz.xml, . ),            \
+        (${MODIPSL}/modeles/LMDZ/DefLists/field_def_lmdz.xml, . ),          \
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histmth_lmdz.xml, . ),   \
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histmthCOSP_lmdz.xml, .),\
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histmthNMC_lmdz.xml, . ),\
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histday_lmdz.xml, . ),   \
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histdayCOSP_lmdz.xml, .),\
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histdayNMC_lmdz.xml, . ),\
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histhf_lmdz.xml, . ),    \
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histhfCOSP_lmdz.xml, .), \
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histhfNMC_lmdz.xml, . ), \
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histstn_lmdz.xml, . ),   \
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histins_lmdz.xml, . ),   \
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histstrataer_lmdz.xml,. ),\
+        (${MODIPSL}/modeles/LMDZ/DefLists/file_def_histLES_lmdz.xml, . )
+
+[RestartFiles]
+List=   (restart.nc, restart.nc, start.nc), \
+        (restartphy.nc, restartphy.nc,  startphy.nc)
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, vert.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt, out_lmdz.x.err, out_lmdz.x.out)
+
+[OutputFiles]
+List=   (histmth.nc,       ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmth.nc,       Post_1M_histmth),       \
+        (histstrataer.nc,  ${R_OUT_ATM_O_M}/${PREFIX}_1M_histstrataer.nc,  Post_1M_histstrataer),  \
+        (histmthCOSP.nc,   ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmthCOSP.nc,   NONE),                  \
+        (histmthNMC.nc,    ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmthNMC.nc,    Post_1M_histmthNMC),    \
+        (histday.nc,       ${R_OUT_ATM_O_D}/${PREFIX}_1D_histday.nc,       NONE),                  \
+        (histdayCOSP.nc,   ${R_OUT_ATM_O_D}/${PREFIX}_1D_histdayCOSP.nc,   NONE),                  \
+        (histdayNMC.nc,    ${R_OUT_ATM_O_D}/${PREFIX}_1D_histdayNMC.nc,    NONE),                  \
+        (histhf.nc,        ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhf.nc,        NONE),                  \
+        (histhfCOSP.nc,    ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhfCOSP.nc,    NONE),                  \
+        (histhfNMC.nc,     ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhfNMC.nc,     NONE),                  \
+        (histhf3h.nc,      ${R_OUT_ATM_O_H}/${PREFIX}_3H_histhf3h.nc,      NONE),                  \
+        (histhf3hm.nc,     ${R_OUT_ATM_O_H}/${PREFIX}_3H_histhf3hm.nc,     NONE)
+
+[Post_1M_histmth]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds, aire)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, t2m_max, t2m_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, absvisaer, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc,  R_peri, R_incl, solaire, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt)
+ChunckJob2D = 100Y 
+TimeSeriesVars3D = (upwd, lwcon, iwcon, lcc3dcon, lcc3dstra, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres, rneb, rnebcon, rhum, mc, paprs, scdnc, ec550aer, concoa, concbc, concso4, concss, concdust, reffclws, reffclwc, tnt, dtdyn, dtphy, dtlschr, tntr, tntscpbl, tnhus, dqdyn, dqvdf, tnhusscpbl, dqphy, evu, mcd)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_histstrataer]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds, aire)
+TimeSeriesVars2D = (budg_emi_ocs)
+ChunckJob2D = 100Y
+TimeSeriesVars3D = (budg_3D_backgr_ocs)
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_1M_histmthCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, pressure2, height, sza, time_counter, time_centered, time_centered_bounds, aire)
+TimeSeriesVars2D = (cllcalipso, clmcalipso, clhcalipso, cltcalipso, tclisccp, albisccp, ctpisccp)
+ChunckJob2D = OFF
+TimeSeriesVars3D = (clcalipso, clisccp2_c01, clisccp2_c02, clisccp2_c03, clisccp2_c04, clisccp2_c05, clisccp2_c06, clisccp2_c07, parasol_refl)
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_1M_histmthNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, tro3, zg, hus, hur, ua, va, wap)
+ChunckJob3D = NONE
+Seasonal=ON
+
+[Post_1D_histday]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, precip, pluc, plul, prw, psol, q2m, sens, sicf, slp, soll, sols, snow, SWdnSFC, t2m, t2m_max, t2m_min, topl, tops, tsol, u10m, v10m, wind10m, wind10max)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = (lwcon, iwcon, mc, rhum, rneb, temp, theta, ovap, geop, vitu, vitv, vitw, pres, paprs)
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_1D_histdayCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, pressure2, height, sza, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (cllcalipso, clmcalipso, clhcalipso, cltcalipso, tclisccp, albisccp, ctpisccp)
+ChunckJob2D = OFF
+TimeSeriesVars3D = (clcalipso, clisccp2_c01, clisccp2_c02, clisccp2_c03, clisccp2_c04, clisccp2_c05, clisccp2_c06, clisccp2_c07, parasol_refl)
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_1D_histdayNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_HF_histhf]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (cldt, psol, q2m, slp, precip, pluc, plul, t2m, tsol, u10m, v10m)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = (temp, theta, ovap, vitu, vitv)
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_HF_histhfCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, height, sza, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (cllcalipso, clmcalipso, clhcalipso, cltcalipso)
+ChunckJob2D = OFF
+TimeSeriesVars3D = (clcalipso, parasol_refl, cfad_lidarsr532_c01, cfad_lidarsr532_c02, cfad_lidarsr532_c03, cfad_lidarsr532_c04, cfad_lidarsr532_c05, cfad_lidarsr532_c06, cfad_lidarsr532_c07, cfad_lidarsr532_c08, cfad_lidarsr532_c09, cfad_lidarsr532_c10, cfad_lidarsr532_c11, cfad_lidarsr532_c12, cfad_lidarsr532_c13, cfad_lidarsr532_c14, cfad_lidarsr532_c15)
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_HF_histhfNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_3H_histhf3hm]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (flat, precip, pluc, snow, topl, topl0, SWupTOA, SWupTOAclr, SWdnTOA, SWupSFC, SWupSFCclr, SWdnSFC, SWdnSFCclr, LWupSFC, LWupSFCclr, LWdnSFC, LWdnSFCclr, bils, bils_tke, bils_diss, bils_ec, bils_kinetic, bils_enthalp, bils_latent, sens, cldt, zmax_th)
+ChunckJob2D = OFF
+TimeSeriesVars3D = ()
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_3H_histhf3h]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (phis, tsol, t2m, q2m, ustar, u10m, v10m, psol)
+ChunckJob2D = OFF
+TimeSeriesVars3D = ()
+ChunckJob3D = OFF
+Seasonal=OFF
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/orchidee.card	(revision 3107)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/orchidee.card	(revision 3107)
@@ -0,0 +1,61 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# The variable DefSuffix gives the suffix of the orchidee.def file to be used.
+# By default the file orchidee.def_Choi will be selected.
+# Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
+# Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
+DefSuffix=CWRR
+
+VEGET_UPDATE=0Y
+
+[InitialStateFiles]
+List=	(${R_IN}/SRF/soils_param.nc,        . ), \
+	(${R_IN}/SRF/soils_param_usdatop.nc,. ), \
+	(${R_IN}/SRF/routing.nc,            . ), \
+        (${R_IN}/SRF/albedo/alb_bg_modisopt_2D.nc, alb_bg.nc ), \
+	(${R_IN}/SRF/PFTMAPS/CMIP5/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_2000.nc, PFTmap.nc), \
+        (${R_IN}/SRF/cartepente2d_15min.nc, .)
+
+[BoundaryFiles]
+List= ()
+ListNonDel= ()
+
+[SmoothFiles]
+List= ()
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
+
+[RestartFiles]
+List=	(sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc)
+
+[OutputText]
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+
+[OutputFiles]
+List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
+        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE)
+
+[Post_1M_sechiba_history]
+Patches = ()
+GatherWithInternal = (lon, lat, time_counter, Areas, Contfrac, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (nobiofrac, alb_nir, alb_vis, evap, fluxlat, fluxsens, netrad, qair, rain, runoff, snow, snownobio, snowf, frac_snow, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac, TWBR, riverflow, coastalflow, DelSoilMoist_daily, DelIntercept_daily, DelSWE_daily, delstock_routing, snowmelt, LAImean, transpir)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (lai, maxvegetfrac, vegetfrac, ptn, nee)
+ChunckJob3D = NONE
+Seasonal = ON
+
+[Post_HF_sechiba_out_2]
+Patches = ()
+GatherWithInternal = (lon, lat, time_counter, Areas, Contfrac, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (mrsos, mrro)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = (ptn)
+ChunckJob3D = 10Y
+Seasonal = OFF
+
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/stomate.card	(revision 3107)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/stomate.card	(revision 3107)
@@ -0,0 +1,45 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=   ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=   ()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+List=   (stomate_rest_out.nc, stomate_rest.nc, stomate_rest_in.nc)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=   (stomate_history.nc,      ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc,      Post_1M_stomate_history),    \
+        (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history)
+
+[Post_1M_stomate_history]
+Patches = ()
+GatherWithInternal = (lon, lat, Areas, CONTFRAC, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (LAI,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
+ChunckJob3D = NONE
+Seasonal = ON
+
+[Post_1M_stomate_ipcc_history]
+Patches = ()
+GatherWithInternal = (lon, lat, Areas, CONTFRAC, time_counter, time_centered, time_centered_bounds)
+TimeSeriesVars2D = (cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal = ON
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/xios.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/xios.card	(revision 3107)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/COMP/xios.card	(revision 3107)
@@ -0,0 +1,29 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+
+[InitialStateFiles]
+List=	()
+
+[BoundaryFiles]
+List=	()
+ListNonDel= ()
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=	()
+
+[RestartFiles]
+List=	(NONE)
+
+[OutputText]
+List=   (xios_client_*,out_xios.x.err.*, out_xios.x.out.*)
+
+[OutputFiles]
+List=   ()
+
+
+
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/config.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/config.card	(revision 3107)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/EXPERIMENTS/LMDZOR/clim_strataer_360d/config.card	(revision 3107)
@@ -0,0 +1,130 @@
+# $Id$
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+JobName=LMDZOR01
+#----- Short Name of Experiment
+ExperimentName=clim
+#----- DEVT TEST PROD
+SpaceName=TEST
+LongName="LMDZOR configuration"
+TagName=LMDZOR
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZOR/clim_strataer_360d
+#============================
+#-- leap, noleap, 360d
+CalendarType=360d
+#-- Begin and end of job 
+#-- "YYYY-MM-DD"
+DateBegin=1980-01-01
+DateEnd=1980-12-30
+#============================
+#-- 1Y, 1M, 5D, 1D Period Length for one execution
+PeriodLength=1Y
+
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ)
+SRF= (orchidee, ORCHIDEE)
+SBG= (stomate, ORCHIDEE)
+IOS= (xios, XIOS)
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component: Real name of executable, Name of executable in the run directory 
+#D- Here is set 47MPI*8OMP which is suitable for resolution 144x142x79
+#D- Change to 31MPI*4OMP for resolution 96x95x39
+ATM= (gcm.e, lmdz.x, 47MPI, 8OMP)
+SRF= ("", "")
+SBG= ("", "")
+IOS= (xios_server.exe, xios.x, 1MPI)
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components 
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart for all components
+RestartDate=2000-01-31
+#D- Define restart simulation name for all components
+RestartJobName=EXP00
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+
+#========================================================================
+#D-- ATM -
+[ATM]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart= n 
+# Last day of the experience used as restart for this component if Restart=y
+RestartDate=2029-12-31
+#D- Define restart simulation name for all components
+RestartJobName=CM606-LR-pdCtrl-01
+#D- Path Server Group Login
+RestartPath=${R_IN}/RESTART/IPSLCM6/DEVT/pdControl
+
+#========================================================================
+#D-- SRF -
+[SRF]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+
+#========================================================================
+#D-- SBG - STOMATE
+[SBG]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+#-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+
+#========================================================================
+#D-- IOS -
+[IOS]
+WriteFrequency=""
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart= n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=
+# Define restart simulation name for this component
+RestartJobName=
+RestartPath=
+
+#========================================================================
+#D-- Post -
+[Post]
+#D- RebuildFrequency determines the frequency of rebuild submission
+RebuildFrequency=NONE
+#D- PackFrequency determines the frequency of pack submission
+PackFrequency=1Y
+#D- TimeSeriesFreqency determines the frequency of post-processing submission
+#D- Set NONE to deactivate the creation of all time series 
+TimeSeriesFrequency=10Y
+#D- SeasonalFrequency determines the length for each seasonal average
+#D- Set NONE to deactivate the creation of all seasonal avereage
+SeasonalFrequency=10Y
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulation's years
+SeasonalFrequencyOffset=0
+
+#========================================================================
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/DRIVER/lmdz.driver
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/DRIVER/lmdz.driver	(revision 3106)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/DRIVER/lmdz.driver	(revision 3107)
@@ -277,6 +277,6 @@
 
     # Activate the histstrataer output file only for configuration with interactive stratospheric aersols 
-    # done by setting the key word LMDZ_strataero=y in lmdz.card
-    if [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
+    # done by setting the key word LMDZ_strataer=y in lmdz.card
+    if [ X${lmdz_UserChoices_LMDZ_strataer} = Xy ] ; then
 	IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .TRUE.
     else
@@ -352,7 +352,13 @@
         IGCM_comp_modifyDefFile blocker run.def config_inca none
     else
-	echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
-	IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
-        IGCM_comp_modifyDefFile blocker run.def config_inca none
+	if [ X${lmdz_UserChoices_LMDZ_strataer} = Xy ] ; then
+	    echo "No coupling to chemistry model but it is a LMDZ STRATAER configuration, set type_trac=coeg in run.def"
+	    IGCM_comp_modifyDefFile blocker run.def type_trac coeg 
+            IGCM_comp_modifyDefFile blocker run.def config_inca none
+	else
+	    echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
+	    IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
+            IGCM_comp_modifyDefFile blocker run.def config_inca none
+	fi
     fi
 
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/physiq.def_AP
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/physiq.def_AP	(revision 3106)
+++ 	(revision )
@@ -1,95 +1,0 @@
-## $Id$
-#
-##  Choix ou non  de  New oliq               
-new_oliq=y
-##  Orodr  ou  non   pour l orographie              
-ok_orodr=y
-##  Orolf  ou  non   pour l orographie              
-ok_orolf=y
-##   Si = .T. ,  lecture du fichier limit avec la bonne annee             
-ok_limitvrai=n
-##  Flag  pour la convection : 1 pour LMD, 2 pour Tiedtke, 3 KE(nvlle version JYG), 30 KE(version IPCC AR4), 4 KE vect
-iflag_con=30
-## Facteur multiplication des precip convectives dans KE
-cvl_corr=1.0
-#
-#
-
-### niveau du diagnostique de conservation d energie
-if_ebil=0
-#
-# parametres KE
-#
-### epmax = Efficacite precipitation maximale
-epmax = .999
-### ok_adj_ema = ?? pas utilise
-ok_adj_ema = n
-### iflag_clw Flag calcul eau liquide
-# - iflag_clw=0 : qcond_incld(i,l) = em_qcondc(l)
-# - iflag_clw=1 : qcond_incld(i,l) = em_qcond(l)
-# - iflag_clw=2 : eau liquide diagnostique en fonction de la Precip
-iflag_clw = 1
-# 
-# parametres nuages
-#
-### cld_lc_lsc  contenu en eau liquide des nuages large-scale (fisrtilp) 
-cld_lc_lsc = 4.16e-4
-### cld_lc_con  contenu en eau liquide des nuages convectifs (fisrtilp) 
-cld_lc_con = 4.16e-4
-### cld_tau_lsc cte de temps utilisee pour eliminer l eau large-scale (fisrtilp) 
-cld_tau_lsc = 1800.
-### cld_tau_con cte de temps utilisee pour eliminer l eau convective (fisrtilp) 
-cld_tau_con = 1800.
-### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace large-scale (fisrtilp) 
-ffallv_lsc = 0.5
-### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace convectifs (fisrtilp) 
-ffallv_con = 0.5
-### coef_eva coef evaporation precips eau/glace (fisrtilp/fisrtilp_tr?/conlmd?)
-coef_eva = 2.e-5
-### reevap_ice  reevaporation de toute la precip dans la couche du dessous pour la glace (fisrtilp) 
-reevap_ice = y
-### iflag_cldcon  flag pour calculer ratqsc=F(ratqsbas,fact_cldcon,q_seri) (physiq) 
-# - iflag_cldcon<=-1 diag. rain_Tiedtke 
-# - iflag_cldcon=1, ratqsc=ratqsbas+fact_cldcon*(q_seri(1)-q_seri(k))/q_seri(k)
-# - iflag_cldcon=1/2, ratqs=max(ratqs,ratqsc)
-# - iflag_cldcon=3,   ratqs=ratqss
-iflag_cldcon = 3
-### iflag_pdf :  flag calcul distribution sous-maille de l eau et des nuages 
-# - iflag_pdf=0, version ratqs, 
-# - iflag_pdf=1, calcul eau condensee, fraction nuageuse, eau nuageuse a partir
-# -              des PDFS de Sandrine Bony 
-iflag_pdf = 1
-### fact_cldcon  constante calcul ratqsc (voir iflag_cldcon) et proprietes nuages convectifs, clwcon0 (physiq.F) 
-fact_cldcon = 1.
-### facttemps=   facteur de relaxation de ratqs (iflag_cldcon=1/2) et rnebcon (iflag_cldcon=3)
-facttemps = 0.
-## ok_newmicro   =y appel newmicro , =n appel nuage (calcul epaisseur optique et emmissivite des nuages) 
-ok_newmicro = y
-### iflag_ratqs=0 correspond a la version IPCC AR4 
-iflag_ratqs=0
-### ratqsbas     ratqs en bas si iflag_cldcon=1 
-ratqsbas = 0.005
-### ratqshaut    ratqs en haut pour ratqss "stables"  
-ratqshaut = 0.33
-### rad_froid    rayon cristaux des nuages de glace "froids" 
-rad_froid = 35
-### rad_chau1    rayon goutelettes d eau chauds", en haut: k=4-klev 
-rad_chau1=12
-### rad_chau2    rayon goutelettes d eau chauds", en bas: k=1-3  
-rad_chau2=11
-# 
-# Coefficient et parametres sur les drags
-#
-f_cdrag_ter=1.
-f_cdrag_stable=1.
-f_cdrag_oce=0.8
-f_rugoro=0.
-### ksta_ter      coef.diffusion minimale sur terre/sic/lic 
-ksta_ter=1.e-7
-### cdmmax =     cdrag maximum pour le moment
-cdmmax = 2.5E-3
-### cdhmax =     cdrag maximum pour l energie
-cdhmax = 2.0E-3
-
-### nsplit_phys (D=1) 
-nsplit_phys=1
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/physiq.def_APrrtm
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/physiq.def_APrrtm	(revision 3107)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/physiq.def_APrrtm	(revision 3107)
@@ -0,0 +1,100 @@
+## $Id$
+#
+##  Choix ou non  de  New oliq               
+new_oliq=y
+##  Orodr  ou  non   pour l orographie              
+ok_orodr=y
+##  Orolf  ou  non   pour l orographie              
+ok_orolf=y
+##   Si = .T. ,  lecture du fichier limit avec la bonne annee             
+ok_limitvrai=n
+##  Flag  pour la convection : 1 pour LMD, 2 pour Tiedtke, 3 KE(nvlle version JYG), 30 KE(version IPCC AR4), 4 KE vect
+iflag_con=30
+## Facteur multiplication des precip convectives dans KE
+cvl_corr=1.0
+#
+#
+
+### niveau du diagnostique de conservation d energie
+if_ebil=0
+#
+# parametres KE
+#
+### epmax = Efficacite precipitation maximale
+epmax = .999
+### ok_adj_ema = ?? pas utilise
+ok_adj_ema = n
+### iflag_clw Flag calcul eau liquide
+# - iflag_clw=0 : qcond_incld(i,l) = em_qcondc(l)
+# - iflag_clw=1 : qcond_incld(i,l) = em_qcond(l)
+# - iflag_clw=2 : eau liquide diagnostique en fonction de la Precip
+iflag_clw = 1
+# 
+# parametres nuages
+#
+### cld_lc_lsc  contenu en eau liquide des nuages large-scale (fisrtilp) 
+cld_lc_lsc = 4.16e-4
+### cld_lc_con  contenu en eau liquide des nuages convectifs (fisrtilp) 
+cld_lc_con = 4.16e-4
+### cld_tau_lsc cte de temps utilisee pour eliminer l eau large-scale (fisrtilp) 
+cld_tau_lsc = 1800.
+### cld_tau_con cte de temps utilisee pour eliminer l eau convective (fisrtilp) 
+cld_tau_con = 1800.
+### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace large-scale (fisrtilp) 
+ffallv_lsc = 0.5
+### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace convectifs (fisrtilp) 
+ffallv_con = 0.5
+### coef_eva coef evaporation precips eau/glace (fisrtilp/fisrtilp_tr?/conlmd?)
+coef_eva = 2.e-5
+### reevap_ice  reevaporation de toute la precip dans la couche du dessous pour la glace (fisrtilp) 
+reevap_ice = y
+### iflag_cldcon  flag pour calculer ratqsc=F(ratqsbas,fact_cldcon,q_seri) (physiq) 
+# - iflag_cldcon<=-1 diag. rain_Tiedtke 
+# - iflag_cldcon=1, ratqsc=ratqsbas+fact_cldcon*(q_seri(1)-q_seri(k))/q_seri(k)
+# - iflag_cldcon=1/2, ratqs=max(ratqs,ratqsc)
+# - iflag_cldcon=3,   ratqs=ratqss
+iflag_cldcon = 3
+### iflag_pdf :  flag calcul distribution sous-maille de l eau et des nuages 
+# - iflag_pdf=0, version ratqs, 
+# - iflag_pdf=1, calcul eau condensee, fraction nuageuse, eau nuageuse a partir
+# -              des PDFS de Sandrine Bony 
+iflag_pdf = 1
+### fact_cldcon  constante calcul ratqsc (voir iflag_cldcon) et proprietes nuages convectifs, clwcon0 (physiq.F) 
+fact_cldcon = 1.
+### facttemps=   facteur de relaxation de ratqs (iflag_cldcon=1/2) et rnebcon (iflag_cldcon=3)
+facttemps = 0.
+## ok_newmicro   =y appel newmicro , =n appel nuage (calcul epaisseur optique et emmissivite des nuages) 
+ok_newmicro = y
+### iflag_ratqs=0 correspond a la version IPCC AR4 
+iflag_ratqs=0
+### ratqsbas     ratqs en bas si iflag_cldcon=1 
+ratqsbas = 0.005
+### ratqshaut    ratqs en haut pour ratqss "stables"  
+ratqshaut = 0.33
+### rad_froid    rayon cristaux des nuages de glace "froids" 
+rad_froid = 35
+### rad_chau1    rayon goutelettes d eau chauds", en haut: k=4-klev 
+rad_chau1=12
+### rad_chau2    rayon goutelettes d eau chauds", en bas: k=1-3  
+rad_chau2=11
+# 
+# Coefficient et parametres sur les drags
+#
+f_cdrag_ter=1.
+f_cdrag_stable=1.
+f_cdrag_oce=0.8
+f_rugoro=0.
+### ksta_ter      coef.diffusion minimale sur terre/sic/lic 
+ksta_ter=1.e-7
+### cdmmax =     cdrag maximum pour le moment
+cdmmax = 2.5E-3
+### cdhmax =     cdrag maximum pour l energie
+cdhmax = 2.0E-3
+
+### nsplit_phys (D=1) 
+nsplit_phys=1
+
+### rrtm
+iflag_rrtm=1
+NSW=6
+
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/traceur.def
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/traceur.def	(revision 3106)
+++ 	(revision )
@@ -1,5 +1,0 @@
-4
-14 14 H2Ov
-10 10 H2Ol
-10 10 H2Oi
-10 10 Aga
Index: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/traceur.def_strataer
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/traceur.def_strataer	(revision 3107)
+++ CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/PARAM/traceur.def_strataer	(revision 3107)
@@ -0,0 +1,42 @@
+41
+14 14 H2Ov
+10 10 H2Ol
+10 10 GASOCS
+10 10 GASSO2
+10 10 GASH2SO4
+10 10 BIN01
+10 10 BIN02
+10 10 BIN03
+10 10 BIN04
+10 10 BIN05
+10 10 BIN06
+10 10 BIN07
+10 10 BIN08
+10 10 BIN09
+10 10 BIN10
+10 10 BIN11
+10 10 BIN12
+10 10 BIN13
+10 10 BIN14
+10 10 BIN15
+10 10 BIN16
+10 10 BIN17
+10 10 BIN18
+10 10 BIN19
+10 10 BIN20
+10 10 BIN21
+10 10 BIN22
+10 10 BIN23
+10 10 BIN24
+10 10 BIN25
+10 10 BIN26
+10 10 BIN27
+10 10 BIN28
+10 10 BIN29
+10 10 BIN30
+10 10 BIN31
+10 10 BIN32
+10 10 BIN33
+10 10 BIN34
+10 10 BIN35
+10 10 BIN36 
