Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/.chimie
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/.chimie	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/.chimie	(revision 2180)
@@ -0,0 +1,1 @@
+CHEM=HELIUM
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/.resol
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/.resol	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/.resol	(revision 2180)
@@ -0,0 +1,2 @@
+HELIUMxLMD9695-L39
+RESOL_ATM_3D=96x95x39
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/AA_make
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/AA_make	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/AA_make	(revision 2180)
@@ -0,0 +1,152 @@
+#- $Id$
+
+all : 
+	if [ -s ./.resol ] ; then gmake `cat .resol` ; else gmake AERxLMD9695-L39 ; fi
+
+
+AERxLMD9695-L19 : libioipsl liborchidee aer_lmdz9695
+	echo "AERxLMD9695-L19" >.resol
+	echo "RESOL_ATM_3D=96x95x19" >>.resol
+	echo "CHEM=AER" > .chimie
+
+CH4_AERxLMD9695-L19 : libioipsl liborchidee ch4aer_lmdz9695
+	echo "CH4_AERxLMD9695-L19" >.resol
+	echo "RESOL_ATM_3D=96x95x19" >>.resol
+	echo "CHEM=CH4_AER" > .chimie
+
+CH4xLMD9695-L19 : libioipsl liborchidee ch4_lmdz9695
+	echo "CH4xLMD9695-L19" >.resol
+	echo "RESOL_ATM_3D=96x95x19" >>.resol
+	echo "CHEM=CH4" > .chimie
+
+NMHCxLMD9695-L19 : libioipsl liborchidee nmhc_lmdz9695
+	echo "NMHCxLMD9695-L19" >.resol
+	echo "RESOL_ATM_3D=96x95x19" >>.resol
+	echo "CHEM=NMHC" > .chimie
+
+NMHC_AERxLMD9695-L19 : libioipsl liborchidee nmhcaer_lmdz9695
+	echo "NMHC_AERxLMD9695-L19" >.resol
+	echo "RESOL_ATM_3D=96x95x19" >>.resol
+	echo "CHEM=NMHC_AER" > .chimie
+
+GESxLMD9695-L19 : libioipsl liborchidee ges_lmdz9695
+	echo "GESxLMD9695-L19" >.resol
+	echo "RESOL_ATM_3D=96x95x19" >>.resol
+	echo "CHEM=GES" > .chimie
+
+AERxLMD144142-L19 : libioipsl liborchidee aer_lmdz144142
+	echo "AERxLMD144142-L19" >.resol
+	echo "RESOL_ATM_3D=144x142x19" >>.resol
+	echo "CHEM=AER" > .chimie
+
+
+NMHCxLMD9695-L39 : libioipsl liborchidee nmhc_lmdz969539
+	echo "NMHCxLMD9695-L39" >.resol
+	echo "RESOL_ATM_3D=96x95x39" >>.resol
+	echo "CHEM=NMHC" > .chimie
+
+AERxLMD9695-L39 : libioipsl liborchidee aer_lmdz969539
+	echo "AERxLMD9695-L39" >.resol
+	echo "RESOL_ATM_3D=96x95x39" >>.resol
+	echo "CHEM=AER" > .chimie
+
+NMHC_AERxLMD9695-L39 : libioipsl liborchidee nmhcaer_lmdz969539
+	echo "NMHC_AERxLMD9695-L39" >.resol
+	echo "RESOL_ATM_3D=96x95x39" >>.resol
+	echo "CHEM=NMHC_AER" > .chimie
+
+GESxLMD9695-L39 : libioipsl liborchidee ges_lmdz969539
+	echo "GESxLMD9695-L39" >.resol
+	echo "RESOL_ATM_3D=96x95x39" >>.resol
+	echo "CHEM=GES" > .chimie
+
+HELIUMxLMD9695-L39 : libioipsl liborchidee hel_lmdz969539
+	echo "HELIUMxLMD9695-L39" >.resol
+	echo "RESOL_ATM_3D=96x95x39" >>.resol
+	echo "CHEM=HELIUM" > .chimie
+
+AERxLMD144142-L39 : libioipsl liborchidee aer_lmdz14414239
+	echo "AERxLMD144142-L39" >.resol
+	echo "RESOL_ATM_3D=144x142x39" >>.resol
+	echo "CHEM=AER" > .chimie
+
+
+libioipsl :
+	(cd ../../modeles/IOIPSL/src ; $(M_K) -f Makefile)
+
+
+liborchidee :
+	(cd ../../modeles/ORCHIDEE/ ; $(M_K) -f Makefile)
+#-Q- platine    (rm -f ../../lib/parallel.mod)
+
+
+aer_lmdz9695:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie AER -parallel mpi -resol 96x95x19 -arch $(FCM_ARCH); cp SIMULATIONS/AER/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x19 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x19_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x19 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x19_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+
+ch4aer_lmdz9695:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie CH4_AER -parallel mpi -resol 96x95x19 -arch $(FCM_ARCH); cp SIMULATIONS/CH4_AER/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x19 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x19_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x19 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x19_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+
+ch4_lmdz9695:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie CH4 -parallel mpi -resol 96x95x19 -arch $(FCM_ARCH); cp SIMULATIONS/CH4/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x19 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x19_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x19 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x19_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+
+nmhc_lmdz9695:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie NMHC -parallel mpi  -resol 96x95x19 -arch $(FCM_ARCH); cp SIMULATIONS/NMHC/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x19 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x19_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x19 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x19_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+
+nmhcaer_lmdz9695:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie NMHC_AER -parallel mpi -resol 96x95x19  -arch $(FCM_ARCH); cp SIMULATIONS/NMHC_AER/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x19 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x19_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x19 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x19_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+ges_lmdz9695:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie GES -parallel mpi -resol 96x95x19 -arch $(FCM_ARCH); cp SIMULATIONS/GES/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x19 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x19_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x19 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x19_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+aer_lmdz144142:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie AER -parallel mpi -resol 144x142x19 -arch $(FCM_ARCH); cp SIMULATIONS/AER/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 144x142x19 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_144x142x19_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 144x142x19 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_144x142x19_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+nmhc_lmdz969539:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie NMHC -parallel mpi  -resol 96x95x39 -arch $(FCM_ARCH); cp SIMULATIONS/NMHC/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x39 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x39_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x39 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x39_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+aer_lmdz969539:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie AER -parallel mpi  -resol 96x95x39 -arch $(FCM_ARCH); cp SIMULATIONS/AER/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x39 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x39_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x39 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x39_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+nmhcaer_lmdz969539:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie NMHC_AER -parallel mpi  -resol 96x95x39 -arch $(FCM_ARCH); cp SIMULATIONS/NMHC_AER/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x39 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x39_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x39 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x39_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+ges_lmdz969539:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie GES -parallel mpi  -resol 96x95x39 -arch $(FCM_ARCH); cp SIMULATIONS/GES/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 96x95x39 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_96x95x39_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x39 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x39_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+hel_lmdz969539:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie HELIUM -parallel mpi   -resol 96x95x39 -arch $(FCM_ARCH); cp SIMULATIONS/HELIUM/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 96x95x39  -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_96x95x39_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+aer_lmdz14414239:
+	(cd ../../modeles/INCA; ./makeinca_fcm -chimie AER -parallel mpi -resol 144x142x39 -arch $(FCM_ARCH); cp SIMULATIONS/AER/inca.dat ../../bin/inca.dat ; )	
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -chimie INCA -d 144x142x39 -parallel mpi -arch $(FCM_ARCH) ce0l ; cp bin/ce0l_144x142x39_phylmd_para_inca.e ../../bin/create_etat0_limit.e ; )
+	(cd ../../modeles/LMDZ; ./makelmdz_fcm -cpp ORCHIDEE_NOOPENMP -d 144x142x39 -chimie INCA -v true -parallel mpi  -arch $(FCM_ARCH) gcm ; cp bin/gcm_144x142x39_phylmd_para_orch_inca.e ../../bin/gcm.e ; )
+
+clean :
+	(rm -rf $(LIBDIR)/* ; rm -f $(BINDIR)/* ; rm -rf ../../modeles/LMDZ/libo/* ../../modeles/LMDZ/.lock ; rm -rf ../../modeles/INCA/config ; )
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/AA_make.ldef
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/AA_make.ldef	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/AA_make.ldef	(revision 2180)
@@ -0,0 +1,11 @@
+#- $Id$
+#---------------------------------------------------------------------
+#- Initialisations for IPSLCM5 configuration
+#---------------------------------------------------------------------
+SHELL = /bin/sh
+#---------------------------------------------------------------------
+LIBDIR = ../../lib
+BINDIR = ../../bin
+MODDIR = $(LIBDIR)
+#---------------------------------------------------------------------
+#-
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,53 @@
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# manage radiative aerosol effect and ozone 
+flag_aerosol=6
+ok_ade=y
+ok_aie=y
+aerosol_couple=n
+read_climoz=2
+ok_cdnc=y
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List=   (${R_INIT}/ATM/${config_UserChoices_TagName}/AMIP/amipbc_sst_360x180_${year}.nc, amipbc_sst_1x1.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/AMIP/amipbc_sic_360x180_${year}.nc, amipbc_sic_1x1.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Ozone/HYBRIDE/v2.clim/tro3_${year}.new.nc, climoz.nc)
+
+ListNonDel= (${R_INIT}/ATM/${config_UserChoices_TagName}/Albedo.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/ECDYN.nc.20020101, ECDYN.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/ECPHY.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Relief.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Rugos.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/landiceref.nc, .)
+### Please, add the o2a.nc file to fit with the coupled configuration associated
+#	(${R_INIT}/ATM/IPSLCM5A/ORCA2.3x${RESOL_ATM}/o2a.nc, o2a.nc)
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+        (${SUBMIT_DIR}/PARAM/output.def_low        ,  output.def),    \
+	(${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \
+	(${SUBMIT_DIR}/PARAM/run.def, .), \
+	(${SUBMIT_DIR}/PARAM/traceur.def, .)
+
+
+[RestartFiles]
+List= (NONE)
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, output.def)
+
+[OutputFiles]
+List=	( limit.nc,       ${R_OUT_ATM_O}/Boundary/${config_UserChoices_JobName}_${year}_limit.nc,       NONE), \
+	( climoz_LMDZ.nc, ${R_OUT_ATM_O}/Boundary/${config_UserChoices_JobName}_${year}_climoz_LMDZ.nc, NONE), \
+	( start.nc,       ${R_OUT_ATM_O}/Restart/${config_UserChoices_JobName}_${year}_start.nc,        NONE), \
+	( startphy.nc,    ${R_OUT_ATM_O}/Restart/${config_UserChoices_JobName}_${year}_startphy.nc,     NONE), \
+	( grilles_gcm.nc, ${R_OUT_ATM_O}/Grid/${config_UserChoices_JobName}_${year}_grilles_gcm.nc,     NONE)
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_amip/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_amip/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_amip/config.card	(revision 2180)
@@ -0,0 +1,77 @@
+# $Id$
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+
+#========================================================================
+#D-- UserChoices -
+[UserChoices]
+#============================
+#D-- (<8 chars MAX for JobName)
+JobName=ELI-${RESOL_ATM_3D}
+LongName="create_etat0_limit for interannuel amip run"
+TagName=LMDZ
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZ/CREATE_amip
+#============================
+#D-- leap, noleap, 360d
+CalendarType=noleap
+#D-- Begin and end of job 
+#D-- "YYYY-MM-DD"
+DateBegin=1979-01-01
+DateEnd=2005-12-31
+#============================
+#D-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+#============================
+PeriodNb=50
+
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ)
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (create_etat0_limit.e, create_etat0_limit.e)
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- If you want a GENERAL RULE FOR RESTARTS, put this flag to 'y'
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=
+#D- Define restart simulation name
+RestartJobName=
+#D- Path Server Group Login
+RestartPath=
+# Attention login depend de la machine
+
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1Y"
+# If config_Restarts_OverRule == 'n' all params are read
+Restart= n
+# Last day of the experience used as restart
+RestartDate=
+# Define restart simulation name
+RestartJobName=
+RestartPath=
+# Old component name for restart (if empty, use new name)
+OldName=
+
+
+#========================================================================
+#D-- NO Post -
+[Post]
+RebuildFrequency=NONE
+TimeSeriesFrequency=NONE
+SeasonalFrequency=NONE
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_clim/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_clim/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_clim/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,53 @@
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# manage radiative aerosol effect and ozone 
+flag_aerosol=6
+ok_ade=y
+ok_aie=y
+aerosol_couple=n
+read_climoz=2
+ok_cdnc=y
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List= ()
+
+ListNonDel= (${R_INIT}/ATM/${config_UserChoices_TagName}/Albedo.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/ECDYN.nc.20020101, ECDYN.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/ECPHY.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Relief.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Rugos.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/landiceref.nc, .) \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Ozone/HYBRIDE/v2.clim/tro3_1995.new.nc, climoz.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/AMIP/sst_bc_clim.nc, amipbc_sst_1x1.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/AMIP/sic_bc_clim.nc, amipbc_sic_1x1.nc)
+### Please, add the o2a.nc file to fit with the coupled configuration associated
+#	(${R_INIT}/ATM/IPSLCM5A/ORCA2.3x${RESOL_ATM}/o2a.nc, o2a.nc)
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+        (${SUBMIT_DIR}/PARAM/output.def_low        ,  output.def),    \
+	(${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \
+	(${SUBMIT_DIR}/PARAM/run.def, .), \
+	(${SUBMIT_DIR}/PARAM/traceur.def, .)
+
+
+[RestartFiles]
+List= (NONE)
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, output.def)
+
+[OutputFiles]
+List=	( limit.nc,       ${R_OUT_ATM_O}/Boundary/${config_UserChoices_JobName}_clim_limit.nc,   NONE), \
+	( climoz_LMDZ.nc, ${R_OUT_ATM_O}/Boundary/${config_UserChoices_JobName}_climoz_LMDZ.nc,  NONE), \
+	( start.nc,       ${R_OUT_ATM_O}/Restart/${config_UserChoices_JobName}_clim_start.nc,    NONE), \
+	( startphy.nc,    ${R_OUT_ATM_O}/Restart/${config_UserChoices_JobName}_clim_startphy.nc, NONE), \
+	( grilles_gcm.nc, ${R_OUT_ATM_O}/Grid/${config_UserChoices_JobName}_grilles_gcm.nc,      NONE)
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_clim/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_clim/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/CREATE_clim/config.card	(revision 2180)
@@ -0,0 +1,75 @@
+# $Id$
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+
+#========================================================================
+#D-- UserChoices -
+[UserChoices]
+#============================
+#D-- (<8 chars MAX for JobName)
+JobName= ELC-${RESOL_ATM_3D}
+LongName="create_etat0_limit for climatology run"
+TagName=LMDZ
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZ/CREATE_clim
+#============================
+#D-- leap, noleap, 360d
+CalendarType=360d
+#D-- Begin and end of job 
+#D-- "YYYY-MM-DD"
+DateBegin=1979-01-01
+DateEnd=1979-12-30
+#============================
+#D-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ)
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (create_etat0_limit.e, create_etat0_limit.e)
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- If you want a GENERAL RULE FOR RESTARTS, put this flag to 'y'
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=
+#D- Define restart simulation name
+RestartJobName=
+#D- Path Server Group Login
+RestartPath=
+# Attention login depend de la machine
+
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1Y"
+# If config_Restarts_OverRule == 'n' all params are read
+Restart= n
+# Last day of the experience used as restart
+RestartDate=
+# Define restart simulation name
+RestartJobName=
+RestartPath=
+# Old component name for restart (if empty, use new name)
+OldName=
+
+
+#========================================================================
+#D-- NO Post -
+[Post]
+RebuildFrequency=NONE
+TimeSeriesFrequency=NONE
+SeasonalFrequency=NONE
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/clim/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/clim/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/clim/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,214 @@
+# $Id$
+
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Physics package to use : 
+# AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
+# NPv3.1 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+LMDZ_Physics=AP
+#LMDZ_Physics=NPv3.1
+
+# You can choose here the name of create_etat0 you want to use
+# If noting is defined here, the job will get the JobName in the file  ../CREATE/config.card
+CREATE=ELC-${RESOL_ATM_3D}
+ByPass_hgardfou_teta=n
+ByPass_hgardfou_mats=n
+LMDZ_NbPeriod_adjust=3
+# LMDZ_NbPeriod_adjust=0
+# To force usage of this Bands file, put LMDZ_NbPeriod_adjust=0 and replace XXXXXXX by Restart Job Name
+# LMDZ_Bands_file_name=${ARCHIVE}/IGCM_OUT/IPSLCM5/XXXXXXX/ATM/Debug/XXXXXXX_Bands_96x95x19_3prc.dat_3
+
+# Set ConfType to choose parameters for aerosols, solar and green house gazes. 
+# The parameter file PARAM/config.def_$ConfType will be used.
+# ConfType=preind/actuel/annuel
+ConfType=actuel
+
+# manage radiative aerosol effect and ozone 
+flag_aerosol=6
+ok_ade=y
+ok_aie=y
+aerosol_couple=n
+read_climoz=2
+ok_cdnc=y
+
+# Set OutLevel to choose the level of output files from LMDZ. The file PARAM/output.def_$OutLevel will be used.
+# OutLevel=low/medium/high
+OutLevel=low
+
+# Set COSP activation and Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_COSP_OK=n
+LMDZ_COSP_monthly=y
+LMDZ_COSP_daily=y
+LMDZ_COSP_hf=n
+
+# Set NMC Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_NMC_monthly=n
+LMDZ_NMC_daily=n
+LMDZ_NMC_hf=n
+
+# Nugding : ok_guide=y/n
+ok_guide=n
+
+[InitialStateFiles]
+List=	(${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Restart/${CREATE}_clim_start.nc,    start.nc),\
+        (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Restart/${CREATE}_clim_startphy.nc, startphy.nc) 
+
+[BoundaryFiles]
+List=()
+#List=
+#      (/dmnfs/cont003/p86ghatt/IGCM_OUT/LMDZOR/NUDGING-CORDEX-AFR/${year}${month}/u.nc, u.nc),\
+#      (/dmnfs/cont003/p86ghatt/IGCM_OUT/LMDZOR/NUDGING-CORDEX-AFR/${year}${month}/v.nc, v.nc)
+
+# With AR5 aerosols (including ASSO4M(=SO4), CSSO4M, AIBCM, ASBCM, AIPOMM, ASPOMM, ASSSM, CSSSM, SSSSM, CIDUSTM)
+# With AR5 ozone(tropo + strato from LMDZOR-INCA-REPROBUS simulations)
+ListNonDel= (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Boundary/${CREATE}_clim_limit.nc, limit.nc),\
+            (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Boundary/${CREATE}_climoz_LMDZ.nc, climoz_LMDZ.nc),\
+            (${R_BC}/ATM/${config_UserChoices_TagName}/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_1995_v3.nc, aerosols1980.nc),\
+            (${R_BC}/ATM/${config_UserChoices_TagName}/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_1860_v3.nc, aerosols.nat.nc)
+
+[SmoothFiles]
+# With AR5 aerosols (including ASSO4M(=SO4), CSSO4M, AIBCM, ASBCM, AIPOMM, ASPOMM, ASSSM, CSSSM, SSSSM, CIDUSTM)
+# With AR5 ozone(tropo + strato from LMDZOR-INCA-REPROBUS simulations)
+List=()
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+	(${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),    \
+	(${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),    \
+	(${SUBMIT_DIR}/PARAM/output.def_${OutLevel},  output.def),    \
+	(${SUBMIT_DIR}/PARAM/config.def_${ConfType},  config.def),    \
+	(${SUBMIT_DIR}/PARAM/guide.def, .), \
+	(${SUBMIT_DIR}/PARAM/run.def, .), \
+	(${SUBMIT_DIR}/PARAM/traceur.def, .)
+
+[RestartFiles]
+List=	(restart.nc, restart.nc, start.nc), \
+	(restartphy.nc, restartphy.nc,  startphy.nc)
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def)
+
+[OutputFiles]
+List=	(histmth.nc,      ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmth.nc,      Post_1M_histmth),     \
+	(histmthCOSP.nc,  ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmthCOSP.nc,  Post_1M_histmthCOSP), \
+	(histmthNMC.nc,   ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmthNMC.nc,   Post_1M_histmthNMC),  \
+	(dynzon.nc,       ${R_OUT_ATM_O_M}/${PREFIX}_1M_dynzon.nc,       Post_1M_dynzon),      \
+	(histday.nc,      ${R_OUT_ATM_O_D}/${PREFIX}_1D_histday.nc,      Post_1D_histday),     \
+	(histdayCOSP.nc,  ${R_OUT_ATM_O_D}/${PREFIX}_1D_histdayCOSP.nc,  Post_1D_histdayCOSP), \
+	(histdayNMC.nc,   ${R_OUT_ATM_O_D}/${PREFIX}_1D_histdayNMC.nc,   Post_1D_histdayNMC),  \
+	(histhf.nc,       ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhf.nc,       Post_HF_histhf),      \
+	(histhfCOSP.nc,   ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhfCOSP.nc,   Post_HF_histhfCOSP),  \
+	(histhfNMC.nc,    ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhfNMC.nc,    Post_HF_histhfNMC),   \
+	(histhf3h.nc,     ${R_OUT_ATM_O_H}/${PREFIX}_3H_histhf3h.nc,     Post_3H_histhf3h),    \
+        (histhf3hm.nc,    ${R_OUT_ATM_O_H}/${PREFIX}_3H_histhf3hm.nc,    Post_3H_histhf3hm)
+
+[Post_1M_histmth]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, ftime_th, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, LWupTOA, LWupTOAclr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, t2m_max, t2m_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, mc, nettop, paprs, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, absvisaer, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (upwd, lwcon, iwcon, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres, rneb, rnebcon, rhum, ec550aer, concoa, concbc, concso4, concss, concdust, reffclws, reffclwc)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_histmthCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_histmthNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap, psbg, uv, vq, vT, wq, vphi, wT, uxu, vxv, TxT, ozone, ozone_daylight)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_dynzon]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1D_histday]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, iwp, lwp, phi500, precip, pluc, plul, prw, psol, rh2m, rh2m_min, rh2m_max, q2m, sens, sicf, slp, soll, sols, LWdnSFC, SWdnSFC, LWupSFCclr,SWupSFC, t2m, t2m_max, t2m_min, topl, tops, tsol, u10m, v10m, wind10m, wind10max, u850, v850, w850, phi850, q850, t850, u700, v700, w700, phi700, q700, t700, u500, v500, w500, phi500, q500, t500, u200, v200, w200, phi200, q200, t200)
+ChunckJob2D = 200Y
+TimeSeriesVars3D = (rhum, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_1D_histdayCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1D_histdayNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_HF_histhf]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (cldt, psol, q2m, slp, SWnetOR, SWdownOR, LWdownOR, precip, pluc, plul, t2m, tsol, u10m, v10m, t850, t700, t500, t200, t50, t10, u850, u700, u500, u200, u50, u10, v850, v700, v500, v200, v50, v10, phi850, phi700, phi200, phi50, phi10, w850, w700, w500, w200, w50, w10, q850, q700, q500, q200, q50, q10)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = (temp, theta, ovap, vitu, vitv)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_HF_histhfCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_HF_histhfNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap, psbg, uv, vq, vT, wq, vphi, wT, uxu, vxv, TxT)
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_3H_histhf3h]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (phis, tsol, t2m, q2m, u10m, v10m, psol, topl, bils, cdrh)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = ()
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_3H_histhf3hm]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (precip, flat, sens, LWdnSFC, LWupSFC, SWdnSFC, SWupSFC, pluc, snow, LWdnSFCclr, SWdnSFCclr, LWupSFCclr, cldt)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = ()
+ChunckJob3D = OFF
+Seasonal=OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/clim/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/clim/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZ/clim/config.card	(revision 2180)
@@ -0,0 +1,101 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=tlmdz
+#----- Short Name of Experiment
+ExperimentName=clim
+#----- DEVT TEST PROD
+SpaceName=TEST
+LongName="LMDZ configuration"
+TagName=LMDZ
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZ/clim
+#============================
+#-- leap, noleap, 360d
+CalendarType=360d
+#-- Begin and end of job 
+#-- "YYYY-MM-DD
+DateBegin=1980-01-01
+DateEnd=1980-01-30
+#============================
+#-- 1Y, 1M, 5D, 1D Period Length of one trunk of simulation
+PeriodLength=1M
+#============================
+#-- Total Number of Processors
+JobNumProcTot=32
+#============================
+# config.card configuration options :
+#R_INIT=/u/rech/psl/rpsl035/IGCM/INIT
+#R_INIT=/dmnfs/cont003/p86ipsl/IGCM/INIT
+#R_BC=/u/rech/psl/rpsl035/IGCM/BC
+#R_BC=/dmnfs/cont003/p86ipsl/IGCM/BC
+#============================
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components 
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart for all components
+RestartDate=2000-01-31
+#D- Define restart simulation name for all components
+RestartJobName=EXP00
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1M 1D HF"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+# Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=LMDZOR01
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+# Old component name for restart (if empty, use new name)
+OldName=
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ4_AR5)
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (gcm.e, lmdz.x)
+
+#========================================================================
+#D-- Post -
+[Post]
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=1Y
+#D- Do we rebuild parallel output from archive (use NONE to use SCRATCHDIR as buffer)
+RebuildFromArchive=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you don't want)
+TimeSeriesFrequency=10Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you don't want)
+SeasonalFrequency=10Y
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulation's years
+SeasonalFrequencyOffset=0
+
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,227 @@
+# $Id$
+
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Physics package to use : 
+# AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
+# NPv3.1 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+LMDZ_Physics=AP
+#LMDZ_Physics=NPv3.1
+
+# Set the variable CREATE needed further below to find the initial and boundary condition files.
+CREATE=ELI-${RESOL_ATM_3D}
+
+# ByPass_hgardfou_teta=y : modify teta_ parameters for following CumulPeriod only
+ByPass_hgardfou_teta=n
+
+# ByPass_hgardfou_mats=y : set parameter purmats=y for following CumulPeriod only
+ByPass_hgardfou_mats=n
+
+# Number of periods where to set parameter adjust=y before switching to adjust=n
+# For adjust=n, set LMDZ_NbPeriod_ajust=0. 
+LMDZ_NbPeriod_adjust=3
+
+# To force usage of specific Bands file, put LMDZ_NbPeriod_adjust=0 and replace XXXXXXX by Restart Job Name
+# LMDZ_Bands_file_name=${ARCHIVE}/IGCM_OUT/IPSLCM5/XXXXXXX/ATM/Debug/XXXXXXX_Bands_96x95x19_3prc.dat_3
+
+# Set ConfType to choose parameters for aerosols, solar and green house gazes. 
+# The parameter file PARAM/config.def_$ConfType will be used.
+# ConfType=preind/actuel/annuel
+ConfType=annuel
+
+# manage radiative aerosol effect and ozone 
+flag_aerosol=6
+ok_ade=y
+ok_aie=y
+aerosol_couple=n
+read_climoz=2
+ok_cdnc=y
+
+
+# Set OutLevel to choose the level of output files from LMDZ. The file PARAM/output.def_$OutLevel will be used.
+# OutLevel=low/medium/high
+OutLevel=low
+
+# Set COSP activation and Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_COSP_OK=n
+LMDZ_COSP_monthly=y
+LMDZ_COSP_daily=y
+LMDZ_COSP_hf=n
+
+# Set NMC Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_NMC_monthly=n
+LMDZ_NMC_daily=n
+LMDZ_NMC_hf=n
+
+# Nugding : ok_guide=y/n
+# If ok_guide=y, add nudging files(u.nc, v.nc, hur.nc,...) in BoundaryFiles section below.
+ok_guide=n
+
+[InitialStateFiles]
+List=	(${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Restart/${CREATE}_${year}_start.nc,    start.nc),\
+        (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Restart/${CREATE}_${year}_startphy.nc, startphy.nc) 
+
+[BoundaryFiles]
+List=()
+#List=
+#      (/dmnfs/cont003/p86ghatt/IGCM_OUT/LMDZOR/NUDGING-CORDEX-AFR/${year}${month}/u.nc, u.nc),\
+#      (/dmnfs/cont003/p86ghatt/IGCM_OUT/LMDZOR/NUDGING-CORDEX-AFR/${year}${month}/v.nc, v.nc)
+
+# With AR5 aerosols (including ASSO4M(=SO4), CSSO4M, AIBCM, ASBCM, AIPOMM, ASPOMM, ASSSM, CSSSM, SSSSM, CIDUSTM)
+# With AR5 ozone(tropo + strato from LMDZOR-INCA-REPROBUS simulations)
+ListNonDel= (${R_BC}/ATM/${config_UserChoices_TagName}/IPCC_AR5/HISTORIQUE/SOLARANDVOLCANOES_1610_2008.txt, SOLARANDVOLCANOES.txt),\
+	    (${R_BC}/ATM/${config_UserChoices_TagName}/IPCC_AR5/HISTORIQUE/CO2_1765_2005.txt, CO2.txt),\
+	    (${R_BC}/ATM/${config_UserChoices_TagName}/IPCC_AR5/HISTORIQUE/CH4_1765_2005.txt, CH4.txt),\
+	    (${R_BC}/ATM/${config_UserChoices_TagName}/IPCC_AR5/HISTORIQUE/N2O_1765_2005.txt, N2O.txt),\
+	    (${R_BC}/ATM/${config_UserChoices_TagName}/IPCC_AR5/HISTORIQUE/CFC11_1765_2005.txt, CFC11.txt),\
+	    (${R_BC}/ATM/${config_UserChoices_TagName}/IPCC_AR5/HISTORIQUE/CFC12_1765_2005.txt, CFC12.txt),\
+	    (${R_BC}/ATM/${config_UserChoices_TagName}/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_1855_v3.nc, aerosols.nat.nc)
+
+[SmoothFiles]
+# With AR5 aerosols (including ASSO4M(=SO4), CSSO4M, AIBCM, ASBCM, AIPOMM, ASPOMM, ASSSM, CSSSM, SSSSM, CIDUSTM)
+# With AR5 ozone(tropo + strato from LMDZOR-INCA-REPROBUS simulations)
+List=   (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Boundary/${CREATE}_${year}_limit.nc,          limit.nc,           1:12:),\
+        (${R_BC}/ATM/${config_UserChoices_TagName}/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_${year}_v3.nc, aerosols${year}.nc, 1:12:), \
+        (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Boundary/${CREATE}_${year}_climoz_LMDZ.nc,    climoz_LMDZ.nc,     1:12:)
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+	(${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),    \
+	(${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),    \
+	(${SUBMIT_DIR}/PARAM/output.def_${OutLevel},  output.def),    \
+	(${SUBMIT_DIR}/PARAM/config.def_${ConfType},  config.def),    \
+	(${SUBMIT_DIR}/PARAM/guide.def, .), \
+	(${SUBMIT_DIR}/PARAM/run.def, .), \
+	(${SUBMIT_DIR}/PARAM/traceur.def, .)
+
+[RestartFiles]
+List=	(restart.nc, restart.nc, start.nc), \
+	(restartphy.nc, restartphy.nc,  startphy.nc)
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def)
+
+[OutputFiles]
+List=	(histmth.nc,      ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmth.nc,      Post_1M_histmth),     \
+	(histmthCOSP.nc,  ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmthCOSP.nc,  Post_1M_histmthCOSP), \
+	(histmthNMC.nc,   ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmthNMC.nc,   Post_1M_histmthNMC),  \
+	(dynzon.nc,       ${R_OUT_ATM_O_M}/${PREFIX}_1M_dynzon.nc,       Post_1M_dynzon),      \
+	(histday.nc,      ${R_OUT_ATM_O_D}/${PREFIX}_1D_histday.nc,      Post_1D_histday),     \
+	(histdayCOSP.nc,  ${R_OUT_ATM_O_D}/${PREFIX}_1D_histdayCOSP.nc,  Post_1D_histdayCOSP), \
+	(histdayNMC.nc,   ${R_OUT_ATM_O_D}/${PREFIX}_1D_histdayNMC.nc,   Post_1D_histdayNMC),  \
+	(histhf.nc,       ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhf.nc,       Post_HF_histhf),      \
+	(histhfCOSP.nc,   ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhfCOSP.nc,   Post_HF_histhfCOSP),  \
+	(histhfNMC.nc,    ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhfNMC.nc,    Post_HF_histhfNMC),   \
+	(histhf3h.nc,     ${R_OUT_ATM_O_H}/${PREFIX}_3H_histhf3h.nc,     Post_3H_histhf3h),    \
+        (histhf3hm.nc,    ${R_OUT_ATM_O_H}/${PREFIX}_3H_histhf3hm.nc,    Post_3H_histhf3hm)
+
+[Post_1M_histmth]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, ftime_th, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, LWupTOA, LWupTOAclr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, t2m_max, t2m_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, mc, nettop, paprs, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, absvisaer, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (upwd, lwcon, iwcon, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres, rneb, rnebcon, rhum, ec550aer, concoa, concbc, concso4, concss, concdust, reffclws, reffclwc)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_histmthCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_histmthNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap, psbg, uv, vq, vT, wq, vphi, wT, uxu, vxv, TxT, ozone, ozone_daylight)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_dynzon]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1D_histday]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, iwp, lwp, phi500, precip, pluc, plul, prw, psol, rh2m, rh2m_min, rh2m_max, q2m, sens, sicf, slp, soll, sols, LWdnSFC, SWdnSFC, LWupSFCclr,SWupSFC, t2m, t2m_max, t2m_min, topl, tops, tsol, u10m, v10m, wind10m, wind10max, u850, v850, w850, phi850, q850, t850, u700, v700, w700, phi700, q700, t700, u500, v500, w500, phi500, q500, t500, u200, v200, w200, phi200, q200, t200)
+ChunckJob2D = 200Y
+TimeSeriesVars3D = (rhum, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_1D_histdayCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1D_histdayNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_HF_histhf]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (cldt, psol, q2m, slp, SWnetOR, SWdownOR, LWdownOR, precip, pluc, plul, t2m, tsol, u10m, v10m, t850, t700, t500, t200, t50, t10, u850, u700, u500, u200, u50, u10, v850, v700, v500, v200, v50, v10, phi850, phi700, phi200, phi50, phi10, w850, w700, w500, w200, w50, w10, q850, q700, q500, q200, q50, q10)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = (temp, theta, ovap, vitu, vitv)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_HF_histhfCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_HF_histhfNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap, psbg, uv, vq, vT, wq, vphi, wT, uxu, vxv, TxT)
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_3H_histhf3h]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (phis, tsol, t2m, q2m, u10m, v10m, psol, topl, bils, cdrh)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = ()
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_3H_histhf3hm]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (precip, flat, sens, LWdnSFC, LWupSFC, SWdnSFC, SWupSFC, pluc, snow, LWdnSFCclr, SWdnSFCclr, LWupSFCclr, cldt)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = ()
+ChunckJob3D = OFF
+Seasonal=OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card	(revision 2180)
@@ -0,0 +1,60 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# The variable DefSuffix gives the suffix of the orchidee.def file to be used.
+# By default the file orchidee.def_Choi will be selected.
+# Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
+# Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
+DefSuffix=Choi
+
+sechiba_LEVEL=11
+VEGET_UPDATE=1Y
+LAND_COVER_CHANGE=y
+
+[InitialStateFiles]
+List=	(${R_INIT}/SRF/${config_UserChoices_TagName}/soils_param.nc,      . ), \
+	(${R_INIT}/SRF/${config_UserChoices_TagName}/routing.nc,          . ), \
+	(${R_BC}/SRF/${config_UserChoices_TagName}/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc), \
+        (${R_INIT}/SRF/${config_UserChoices_TagName}/cartepente2d_15min.nc, .)
+
+[BoundaryFiles]
+List= ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=(${R_BC}/SRF/${config_UserChoices_TagName}/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc)
+
+[OutputText]
+List=   (out_orchidee, orchidee.def)
+
+[OutputFiles]
+List=	(sechiba_history.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
+        (sechiba_out_2.nc, ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc, Post_HF_sechiba_out_2), \
+        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc, NONE)
+
+[Post_1M_sechiba_history]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (nobiofrac, alb_nir, alb_vis, bqsb, evap, fluxlat, fluxsens, gqsb, netrad, qair, rain, runoff, snow, snownobio, snowf, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac)
+ChunckJob2D= NONE
+TimeSeriesVars3D= (lai, maxvegetfrac, vegetfrac, CO2FLUX, ptn, nee)
+ChunckJob3D= NONE
+Seasonal= ON
+
+[Post_HF_sechiba_out_2]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (mrsos, mrro)
+ChunckJob2D= 50Y
+TimeSeriesVars3D= (ptn)
+ChunckJob3D= 10Y
+Seasonal= OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/stomate.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/COMP/stomate.card	(revision 2180)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+stomate_LEVEL=10
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=	()
+ListNonDel= (${R_BC}/SRF/${config_UserChoices_TagName}/reftemp.nc, .)
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(stomate_rest_out.nc, stomate_rest.nc, stomate_rest_in.nc)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=	(stomate_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc, Post_1M_stomate_history) \
+    (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history)
+
+[Post_1M_stomate_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas)
+TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CO2FLUX_MONTHLY,LAI,VEGET,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE)
+ChunckJob3D = NONE
+Seasonal=ON
+
+[Post_1M_stomate_ipcc_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas, CONTFRAC)
+TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
+ChunckJob2D = NONE
+TimeSeriesVars3D=()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/amip/config.card	(revision 2180)
@@ -0,0 +1,134 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=LMDZOR01
+#----- Short Name of Experiment
+ExperimentName=amip
+#----- DEVT TEST PROD
+SpaceName=TEST
+LongName="LMDZOR configuration"
+TagName=LMDZOR
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZOR/amip
+#============================
+#-- leap, noleap, 360d
+CalendarType=noleap
+#-- Begin and end of job 
+#-- "YYYY-MM-DD"
+DateBegin=1980-01-01
+DateEnd=1980-01-31
+#============================
+#-- 1Y, 1M, 5D, 1D Period Length of one trunk of simulation
+PeriodLength=1M
+#============================
+#-- Total Number of Processors
+JobNumProcTot=32
+#============================
+# config.card configuration options :
+#R_INIT=/u/rech/psl/rpsl035/IGCM/INIT
+#R_INIT=/dmnfs/cont003/p86ipsl/IGCM/INIT
+#R_BC=/u/rech/psl/rpsl035/IGCM/BC
+#R_BC=/dmnfs/cont003/p86ipsl/IGCM/BC
+#============================
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components 
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart for all components
+RestartDate=2000-01-31
+#D- Define restart simulation name for all components
+RestartJobName=EXP00
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1M 1D HF"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+# Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=LMDZOR01
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- SRF -
+[SRF]
+WriteFrequency="1M HF"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+#-- Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- SBG - STOMATE
+[SBG]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+#-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+#-- Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ4_AR5)
+SRF= (orchidee, ORCHIDEE_1_9_5)
+SBG= (stomate, ORCHIDEE_1_9_5)
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (gcm.e, lmdz.x)
+SRF= ("", "")
+SBG= ("", "")
+
+#========================================================================
+#D-- Post -
+[Post]
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=1Y
+#D- Do we rebuild parallel output from archive (use NONE to use SCRATCHDIR as buffer)
+RebuildFromArchive=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you don't want)
+TimeSeriesFrequency=10Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you don't want)
+SeasonalFrequency=10Y
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulation's years
+SeasonalFrequencyOffset=0
+
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,221 @@
+# $Id$
+
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Physics package to use : 
+# AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
+# NPv3.1 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+LMDZ_Physics=AP
+
+# Set the variable CREATE needed further below to find the initial and boundary condition files.
+CREATE=ELC-${RESOL_ATM_3D}
+
+# ByPass_hgardfou_teta=y : modify teta_ parameters for following CumulPeriod only
+ByPass_hgardfou_teta=n
+
+# ByPass_hgardfou_mats=y : set parameter purmats=y for following CumulPeriod only
+ByPass_hgardfou_mats=n
+
+# Number of periods where to set parameter adjust=y before switching to adjust=n
+# For adjust=n, set LMDZ_NbPeriod_ajust=0. 
+LMDZ_NbPeriod_adjust=3
+
+# To force usage of specific Bands file, set LMDZ_NbPeriod_adjust=0 and replace XXXXXXX by Restart Job Name
+# LMDZ_Bands_file_name=${ARCHIVE}/IGCM_OUT/IPSLCM5/XXXXXXX/ATM/Debug/XXXXXXX_Bands_96x95x19_3prc.dat_3
+
+# Set ConfType to choose parameters for aerosols, solar and green house gazes. 
+# The parameter file PARAM/config.def_$ConfType will be used.
+# ConfType=preind/actuel/annuel
+ConfType=actuel
+
+# manage radiative aerosol effect and ozone 
+flag_aerosol=6
+ok_ade=y
+ok_aie=y
+aerosol_couple=n
+read_climoz=2
+ok_cdnc=y
+
+# Set OutLevel to choose the level of output files from LMDZ. The file PARAM/output.def_$OutLevel will be used.
+# OutLevel=low/medium/high
+OutLevel=low
+
+# Set COSP activation and Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_COSP_OK=n
+LMDZ_COSP_monthly=y
+LMDZ_COSP_daily=y
+LMDZ_COSP_hf=n
+
+# Set NMC Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_NMC_monthly=n
+LMDZ_NMC_daily=n
+LMDZ_NMC_hf=n
+
+# Nugding : ok_guide=y/n
+# If ok_guide=y, add nudging files(u.nc, v.nc, hur.nc,...) in BoundaryFiles section below.
+ok_guide=n
+
+
+[InitialStateFiles]
+List=	(${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Restart/${CREATE}_clim_start.nc,    start.nc),\
+        (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Restart/${CREATE}_clim_startphy.nc, startphy.nc) 
+
+[BoundaryFiles]
+List=()
+#List=
+#      (/dmnfs/cont003/p86ghatt/IGCM_OUT/LMDZOR/NUDGING-CORDEX-AFR/${year}${month}/u.nc, u.nc),\
+#      (/dmnfs/cont003/p86ghatt/IGCM_OUT/LMDZOR/NUDGING-CORDEX-AFR/${year}${month}/v.nc, v.nc)
+
+# With AR5 aerosols (including ASSO4M(=SO4), CSSO4M, AIBCM, ASBCM, AIPOMM, ASPOMM, ASSSM, CSSSM, SSSSM, CIDUSTM)
+# With AR5 ozone(tropo + strato from LMDZOR-INCA-REPROBUS simulations)
+ListNonDel= (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Boundary/${CREATE}_clim_limit.nc, limit.nc),\
+            (${ARCHIVE}/IGCM_OUT/LMDZ/${CREATE}/ATM/Output/Boundary/${CREATE}_climoz_LMDZ.nc, climoz_LMDZ.nc),\
+            (${R_BC}/ATM/${config_UserChoices_TagName}/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_1995_v3.nc, aerosols1980.nc),\
+            (${R_BC}/ATM/${config_UserChoices_TagName}/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_1860_v3.nc, aerosols.nat.nc)
+
+[SmoothFiles]
+# With AR5 aerosols (including ASSO4M(=SO4), CSSO4M, AIBCM, ASBCM, AIPOMM, ASPOMM, ASSSM, CSSSM, SSSSM, CIDUSTM)
+# With AR5 ozone(tropo + strato from LMDZOR-INCA-REPROBUS simulations)
+List=()
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+	(${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),    \
+	(${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),    \
+	(${SUBMIT_DIR}/PARAM/output.def_${OutLevel},  output.def),    \
+	(${SUBMIT_DIR}/PARAM/config.def_${ConfType},  config.def),    \
+	(${SUBMIT_DIR}/PARAM/guide.def, .), \
+	(${SUBMIT_DIR}/PARAM/run.def, .), \
+	(${SUBMIT_DIR}/PARAM/traceur.def, .)
+
+[RestartFiles]
+List=	(restart.nc, restart.nc, start.nc), \
+	(restartphy.nc, restartphy.nc,  startphy.nc)
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def)
+
+[OutputFiles]
+List=	(histmth.nc,      ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmth.nc,      Post_1M_histmth),     \
+	(histmthCOSP.nc,  ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmthCOSP.nc,  Post_1M_histmthCOSP), \
+	(histmthNMC.nc,   ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmthNMC.nc,   Post_1M_histmthNMC),  \
+	(dynzon.nc,       ${R_OUT_ATM_O_M}/${PREFIX}_1M_dynzon.nc,       Post_1M_dynzon),      \
+	(histday.nc,      ${R_OUT_ATM_O_D}/${PREFIX}_1D_histday.nc,      Post_1D_histday),     \
+	(histdayCOSP.nc,  ${R_OUT_ATM_O_D}/${PREFIX}_1D_histdayCOSP.nc,  Post_1D_histdayCOSP), \
+	(histdayNMC.nc,   ${R_OUT_ATM_O_D}/${PREFIX}_1D_histdayNMC.nc,   Post_1D_histdayNMC),  \
+	(histhf.nc,       ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhf.nc,       Post_HF_histhf),      \
+	(histhfCOSP.nc,   ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhfCOSP.nc,   Post_HF_histhfCOSP),  \
+	(histhfNMC.nc,    ${R_OUT_ATM_O_H}/${PREFIX}_HF_histhfNMC.nc,    Post_HF_histhfNMC),   \
+	(histhf3h.nc,     ${R_OUT_ATM_O_H}/${PREFIX}_3H_histhf3h.nc,     Post_3H_histhf3h),    \
+        (histhf3hm.nc,    ${R_OUT_ATM_O_H}/${PREFIX}_3H_histhf3hm.nc,    Post_3H_histhf3hm)
+
+[Post_1M_histmth]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, ftime_th, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, LWupTOA, LWupTOAclr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, t2m_max, t2m_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, mc, nettop, paprs, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, absvisaer, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (upwd, lwcon, iwcon, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres, rneb, rnebcon, rhum, ec550aer, concoa, concbc, concso4, concss, concdust, reffclws, reffclwc)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_histmthCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1M_histmthNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap, psbg, uv, vq, vT, wq, vphi, wT, uxu, vxv, TxT, ozone, ozone_daylight)
+ChunckJob3D = 100Y
+Seasonal=ON
+
+[Post_1M_dynzon]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1D_histday]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, iwp, lwp, phi500, precip, pluc, plul, prw, psol, rh2m, rh2m_min, rh2m_max, q2m, sens, sicf, slp, soll, sols, LWdnSFC, SWdnSFC, LWupSFCclr,SWupSFC, t2m, t2m_max, t2m_min, topl, tops, tsol, u10m, v10m, wind10m, wind10max, u850, v850, w850, phi850, q850, t850, u700, v700, w700, phi700, q700, t700, u500, v500, w500, phi500, q500, t500, u200, v200, w200, phi200, q200, t200)
+ChunckJob2D = 200Y
+TimeSeriesVars3D = (rhum, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_1D_histdayCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_1D_histdayNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_HF_histhf]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (cldt, psol, q2m, slp, SWnetOR, SWdownOR, LWdownOR, precip, pluc, plul, t2m, tsol, u10m, v10m, t850, t700, t500, t200, t50, t10, u850, u700, u500, u200, u50, u10, v850, v700, v500, v200, v50, v10, phi850, phi700, phi200, phi50, phi10, w850, w700, w500, w200, w50, w10, q850, q700, q500, q200, q50, q10)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = (temp, theta, ovap, vitu, vitv)
+ChunckJob3D = 10Y
+Seasonal=OFF
+
+[Post_HF_histhfCOSP]
+Patches = ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE 
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
+Seasonal=OFF
+
+[Post_HF_histhfNMC]
+Patches = ()
+GatherWithInternal = (lon, lat, plev, time_counter, time_counter_bnds)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = (ta, zg, hus, hur, ua, va, wap, psbg, uv, vq, vT, wq, vphi, wT, uxu, vxv, TxT)
+ChunckJob3D = 100Y
+Seasonal=OFF
+
+[Post_3H_histhf3h]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (phis, tsol, t2m, q2m, u10m, v10m, psol, topl, bils, cdrh)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = ()
+ChunckJob3D = OFF
+Seasonal=OFF
+
+[Post_3H_histhf3hm]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds)
+TimeSeriesVars2D = (precip, flat, sens, LWdnSFC, LWupSFC, SWdnSFC, SWupSFC, pluc, snow, LWdnSFCclr, SWdnSFCclr, LWupSFCclr, cldt)
+ChunckJob2D = 50Y
+TimeSeriesVars3D = ()
+ChunckJob3D = OFF
+Seasonal=OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/orchidee.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/orchidee.card	(revision 2180)
@@ -0,0 +1,59 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# The variable DefSuffix gives the suffix of the orchidee.def file to be used.
+# By default the file orchidee.def_Choi will be selected.
+# Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
+# Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
+DefSuffix=Choi
+
+sechiba_LEVEL=11
+VEGET_UPDATE=0Y
+LAND_COVER_CHANGE=n
+
+[InitialStateFiles]
+List=	(${R_INIT}/SRF/${config_UserChoices_TagName}/soils_param.nc,      . ), \
+	(${R_INIT}/SRF/${config_UserChoices_TagName}/routing.nc,          . ), \
+	(${R_BC}/SRF/${config_UserChoices_TagName}/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_2000.nc, PFTmap.nc), \
+        (${R_INIT}/SRF/${config_UserChoices_TagName}/cartepente2d_15min.nc, .)
+
+[BoundaryFiles]
+List= ()
+ListNonDel= ()
+
+[SmoothFiles]
+List= ()
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc)
+
+[OutputText]
+List=   (out_orchidee, orchidee.def)
+
+[OutputFiles]
+List=	(sechiba_history.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
+        (sechiba_out_2.nc, ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc, Post_HF_sechiba_out_2), \
+        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc, NONE)
+
+[Post_1M_sechiba_history]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (nobiofrac, alb_nir, alb_vis, bqsb, evap, fluxlat, fluxsens, gqsb, netrad, qair, rain, runoff, snow, snownobio, snowf, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac)
+ChunckJob2D= NONE
+TimeSeriesVars3D= (lai, maxvegetfrac, vegetfrac, CO2FLUX, ptn, nee)
+ChunckJob3D= NONE
+Seasonal= ON
+
+[Post_HF_sechiba_out_2]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (mrsos, mrro)
+ChunckJob2D= 50Y
+TimeSeriesVars3D= (ptn)
+ChunckJob3D= 10Y
+Seasonal= OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/stomate.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/COMP/stomate.card	(revision 2180)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+stomate_LEVEL=10
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=	()
+ListNonDel= (${R_BC}/SRF/${config_UserChoices_TagName}/reftemp.nc, .)
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(stomate_rest_out.nc, stomate_rest.nc, stomate_rest_in.nc)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=	(stomate_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc, Post_1M_stomate_history) \
+    (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history)
+
+[Post_1M_stomate_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas)
+TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CO2FLUX_MONTHLY,LAI,VEGET,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE)
+ChunckJob3D = NONE
+Seasonal=ON
+
+[Post_1M_stomate_ipcc_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas, CONTFRAC)
+TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
+ChunckJob2D = NONE
+TimeSeriesVars3D=()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZOR/clim/config.card	(revision 2180)
@@ -0,0 +1,134 @@
+# $Id$
+# This is config.card file for restart with an NEW libIGCM simulation tree.
+#
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#D-- UserChoices -
+[UserChoices]
+#============================
+#-- (<8 chars MAX for JobName)
+JobName=LMDZOR01
+#----- Short Name of Experiment
+ExperimentName=clim
+#----- DEVT TEST PROD
+SpaceName=TEST
+LongName="LMDZOR configuration"
+TagName=LMDZOR
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZOR/clim
+#============================
+#-- leap, noleap, 360d
+CalendarType=360d
+#-- Begin and end of job 
+#-- "YYYY-MM-DD"
+DateBegin=1980-01-01
+DateEnd=1980-01-30
+#============================
+#-- 1Y, 1M, 5D, 1D Period Length of one trunk of simulation
+PeriodLength=1M
+#============================
+#-- Total Number of Processors
+JobNumProcTot=32
+#============================
+# config.card configuration options :
+#R_INIT=/u/rech/psl/rpsl035/IGCM/INIT
+#R_INIT=/dmnfs/cont003/p86ipsl/IGCM/INIT
+#R_BC=/u/rech/psl/rpsl035/IGCM/BC
+#R_BC=/dmnfs/cont003/p86ipsl/IGCM/BC
+#============================
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- by default: config.card describes no restart for all components 
+#D-             ie start from Levitus or limit files
+#D- If you want to restart all components from the same simulation,
+#D-      put OveRule flag to 'y' and set the next 3 parameters
+OverRule=n
+#D- Last day of the experience used as restart for all components
+RestartDate=2000-01-31
+#D- Define restart simulation name for all components
+RestartJobName=EXP00
+#D- Path Server Group Login
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1M 1D HF"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+# Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=LMDZOR01
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- SRF -
+[SRF]
+WriteFrequency="1M HF"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+##-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+#-- Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- SBG - STOMATE
+[SBG]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+#-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+#-- Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ4_AR5)
+SRF= (orchidee, ORCHIDEE_1_9_5)
+SBG= (stomate, ORCHIDEE_1_9_5)
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (gcm.e, lmdz.x)
+SRF= ("", "")
+SBG= ("", "")
+
+#========================================================================
+#D-- Post -
+[Post]
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission (use NONE for DRYRUN=3)
+RebuildFrequency=1Y
+#D- Do we rebuild parallel output from archive (use NONE to use SCRATCHDIR as buffer)
+RebuildFromArchive=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission (NONE if you don't want)
+TimeSeriesFrequency=10Y
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average (NONE if you don't want)
+SeasonalFrequency=10Y
+#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
+#D- Usefull if you do not want to consider the first X simulation's years
+SeasonalFrequencyOffset=0
+
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/inca.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/inca.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/inca.card	(revision 2180)
@@ -0,0 +1,61 @@
+#- $Id: inca.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Set climatological to choose if the simulation will use online 10m wind (=y) or offline (=n)
+climatological=n
+# Set climatological to choose the write_frequency for inca output (inca_avgr, forcage, inca_inst)
+# 86400 = daily output
+freq_write_chem=86400
+# heat fluxes computed with feedback corresponding to 0 --> no aerosol effects, 1--> aerosol effects selected by ok_ade, ok_aie
+feedb=0
+
+
+[InitialStateFiles]
+List= ()
+	
+[BoundaryFiles]
+List=	    (/ccc/work/cont003/dsm/p24data/ECMWF320x160/AN${year}/165_${year}${month}.nc      , u10mec.nc)\
+	    (/ccc/work/cont003/dsm/p24data/ECMWF320x160/AN${year}/166_${year}${month}.nc      , v10mec.nc)\
+	    (/ccc/work/cont003/dsm/p24data/ECMWF${RESOL_ATM_XY}/AN${year}/u10m_ecmwf_${year}${month}.nc , u10m.nc  )\
+	    (/ccc/work/cont003/dsm/p24data/ECMWF${RESOL_ATM_XY}/AN${year}/v10m_ecmwf_${year}${month}.nc , v10m.nc  )
+
+ListNonDel= (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/npp.nc		,   npp.nc		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/oxydants.nc	,   oxydants.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/sflx.nc		,   sflx.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/aircraft.nc	,   aircraft.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/landuse.nc	,   landuse.nc		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/rhvEC.txt	,   rhvEC.txt		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/wthEC.txt	,   wthEC.txt		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/clyEC.txt	,   clyEC.txt		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/wth.dat		,   wth.dat		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/cly.dat		,   cly.dat		)\
+ 	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/rhv.dat		,   rhv.dat		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/phototable_glo.dat   ,   phototable.dat	)
+
+
+[ParametersFiles]
+List= (${SUBMIT_DIR}/PARAM/inca.def, .)
+
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List= (precipinsoil.dat, precipinsoil.dat, precipinsoil.dat) 
+
+
+[OutputText]
+List=(inca.out,inca.def)  
+
+[OutputFiles]
+List=	(inca_avgr.nc,      ${R_OUT_CHM_O_M}/${PREFIX}_1M_inca_avgr.nc,    Post_1M_inca_avgr  ),\
+	(forcage.nc,      ${R_OUT_CHM_O_M}/${PREFIX}_1M_forcage.nc,      NONE)
+
+
+[Post_1M_inca_avgr]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter)
+TimeSeriesVars2D = (OD550_ASBCM, OD550_ASPOMM, OD550_ASSO4M, OD550_CSSO4M, OD550_SSSSM, OD550_ASSSM, OD550_CSSSM, OD550_CIDUSTM, OD550_AIBCM, OD550_AIPOMM)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CH4,NO,NO2,CO,O3,HNO3)
+ChunckJob3D = NONE
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,91 @@
+#- $Id: lmdz.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Physics package to use :
+# AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources with 19 or 39 levels
+# NPv3.1 for new physics, to be used with LMDZ5/trunk revision 1554 or later with 39 levels
+LMDZ_Physics=AP
+#LMDZ_Physics=NPv3.1
+
+
+LMDZ_NbPeriod_adjust=3
+# LMDZ_NbPeriod_adjust=0
+# To force usage of this Bands file, put LMDZ_NbPeriod_adjust=0 and replace XXXXXXX by Restart Job Name
+#LMDZ_Bands_file_name=/ccc/store/cont003/dsm/p86cozic/IGCM_OUT/LMDZORINCA/AER/L5OI4_Bands/ATM/Debug/L5OI4_Bands_Bands_96x95x39_32prc.dat_1
+
+# Set ConfType to choose parameters for aerosols, solar and green house gazes. 
+# The parameter file PARAM/config.def_$ConfType will be used.
+# ConfType=preind/actuel/annuel
+ConfType=Anne
+
+# manage radiative aerosol effect and ozone 
+flag_aerosol=6
+ok_ade=y
+ok_aie=n
+aerosol_couple=y
+read_climoz=0
+ok_cdnc=y
+
+# Set OutLevel to choose the level of output files from LMDZ. The file PARAM/output.def_$OutLevel will be used.
+# OutLevel=low/medium/high
+OutLevel=low
+
+# Set COSP activation and Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_COSP_OK=n
+LMDZ_COSP_monthly=n
+LMDZ_COSP_daily=n
+LMDZ_COSP_hf=n
+
+# Set NMC Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_NMC_monthly=n
+LMDZ_NMC_daily=n
+LMDZ_NMC_hf=n
+
+
+# Nugding : ok_guide=y/n
+ok_guide=n
+
+
+[InitialStateFiles]
+# start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job
+List= 	(${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/start.nc	, start.nc	) \
+	(${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/startphy.nc	, startphy.nc	)
+
+
+[BoundaryFiles]
+List=   (${R_BC}/CHM/LMDZORINCA/${RESOL_ATM}_leap/EL-${RESOL_ATM}_${year}1231_limit.nc , limit.nc)
+
+
+#	(${R_BC}/ATM/LMDZORINCA/${RESOL_ATM}/NUDGE_FILES/u_ecmwf_${year}${month}.nc	, u.nc		),\
+#	(${R_BC}/ATM/LMDZORINCA/${RESOL_ATM}/NUDGE_FILES/v_ecmwf_${year}${month}.nc	, v.nc		)
+ 
+ListNonDel= ()
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}	, physiq.def	), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D}            	, gcm.def	), \
+	(${SUBMIT_DIR}/PARAM/run.def					, .		), \
+        (${SUBMIT_DIR}/PARAM/output.def_${OutLevel},                    output.def      ), \
+        (${SUBMIT_DIR}/PARAM/config.def_${ConfType},                    config.def      ), \
+	(${SUBMIT_DIR}/PARAM/guide.def					, .		)
+
+[RestartFiles]
+List=	(restart.nc, restart.nc, start.nc), \
+	(restartphy.nc, restartphy.nc,  startphy.nc) 
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, Bands_${BandsResol}_${NUM_PROC_ATM}prc.dat, config.def, output.def)
+
+
+[OutputFiles]
+List=	(histmth.nc,      ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmth.nc,   Post_1M_histmth   )	
+
+[Post_1M_histmth]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, t2m_max, t2m_min, taux_ter, taux_sic, taux_lic, taux_oce, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card	(revision 2180)
@@ -0,0 +1,68 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# The variable DefSuffix gives the suffix of the orchidee.def file to be used.
+# By default the file orchidee.def_Choi will be selected.
+# Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
+# Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
+DefSuffix=Choi
+
+sechiba_LEVEL=11
+VEGET_UPDATE=1Y
+LAND_COVER_CHANGE=y
+
+[InitialStateFiles]
+List=	(${R_INIT}/SRF/LMDZORINCA/soils_param.nc,      . ), \
+	(${R_INIT}/SRF/LMDZORINCA/routing.nc,          . ), \
+	(${R_BC}/SRF/LMDZORINCA/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+## Pour les annees 2006-2100 suivant le RCP 
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP8.5_MESSAGE/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP4.5_MiniCAM//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP6.0_AIM//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP3-PD_IMAGE//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+
+[BoundaryFiles]
+List= ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=(${R_BC}/SRF/LMDZORINCA/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+## Pour les annees 2006-2100 suivant le RCP 
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP8.5_MESSAGE/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP4.5_MiniCAM//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP6.0_AIM//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP3-PD_IMAGE//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc)
+
+[OutputText]
+List=   (out_orchidee, orchidee.def)
+
+[OutputFiles]
+List=	(sechiba_history.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
+        (sechiba_out_2.nc, ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc, Post_HF_sechiba_out_2), \
+        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc, NONE)
+
+[Post_1M_sechiba_history]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (nobiofrac, alb_nir, alb_vis, bqsb, evap, fluxlat, fluxsens, gqsb, netrad, qair, rain, runoff, snow, snownobio, snowf, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac)
+ChunckJob2D= NONE
+TimeSeriesVars3D= (lai, maxvegetfrac, vegetfrac, CO2FLUX, ptn, nee)
+ChunckJob3D= NONE
+Seasonal= ON
+
+[Post_HF_sechiba_out_2]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (mrsos, mrro)
+ChunckJob2D= 50Y
+TimeSeriesVars3D= (ptn)
+ChunckJob3D= 10Y
+Seasonal= OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/stomate.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/COMP/stomate.card	(revision 2180)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+stomate_LEVEL=10
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=	()
+ListNonDel= (${R_BC}/SRF/LMDZORINCA/reftemp.nc, .)
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(stomate_rest_out.nc, stomate_rest.nc, stomate_rest_in.nc)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=	(stomate_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc, Post_1M_stomate_history) \
+    (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history)
+
+[Post_1M_stomate_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas)
+TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CO2FLUX_MONTHLY,LAI,VEGET,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE)
+ChunckJob3D = NONE
+Seasonal=ON
+
+[Post_1M_stomate_ipcc_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas, CONTFRAC)
+TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
+ChunckJob2D = NONE
+TimeSeriesVars3D=()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/AER/config.card	(revision 2180)
@@ -0,0 +1,138 @@
+#- $Id: config.card 69 2007-06-21 14:08:22Z acosce $
+#========================================================================
+#D-- Carte pour run AR5WERF -- 
+#D-- Les fichiers sflx - aircraft - start - startphy créés par S. Szopa
+#D--
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#========================================================================
+#D-- UserChoices -
+[UserChoices]
+#============================
+#D-- (<8 chars MAX for JobName)
+JobName=L5OI4run
+###SpaceName=TEST
+###ExperimentName=XXXX
+LongName='nouvelles configs + LMDZ5 INCA4 39 '
+TagName=LMDZORINCA/${CHEM}
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZORINCA/AER
+#============================
+#D-- leap, noleap, 360d
+CalendarType=leap
+#D-- Début et fin de Job
+#D-- "YYYY-MM-DD"
+DateBegin=2006-01-01
+DateEnd=2006-12-31
+#============================
+#D-- 1Y, 1M, 5D, 1D
+PeriodLength=1M
+#============================
+#-- Total Number of Processors (minimum is 2 for a coupled configuration)
+JobNumProcTot=32
+#============================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ4)
+SRF= (orchidee, orchidee_1_9_5)
+SBG= (stomate, ORCHIDEE_1_9_5)
+CHM= (inca, INCA3) 
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (gcm.e, gcm.e)
+SRF= ("", "")
+SBG= ("", "")
+CHM= (inca.dat, inca.dat)
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- If you want a GENERAL RULE FOR RESTARTS, put this flag to 'y'
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=2005-12-31
+#D- Define restart simulation name (=> JOB_OS)
+RestartJobName=LOI_AR5WERF_E0_2006
+#D- Path Server Group Login (=> PSGL)
+RestartPath=/ccc/work/cont003/dsm/p24cozic/INPUT_INCA/IGCM_OUT/LMDZORINCA/NMHC_AER
+# Attention login depend de la machine
+
+#========================================================================
+#D-- Post -
+[Post]
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission
+RebuildFrequency=1Y
+#D- Do we rebuild parallel output from archive
+RebuildFromArchive=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission
+TimeSeriesFrequency=NONE
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average
+SeasonalFrequency=NONE
+#D-
+PackFrequency=1Y
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1M 1D HF"
+# If config_Restarts_OverRule == 'n' all params are read
+Restart= n
+# Last day of the experience used as restart
+RestartDate=2000-01-01
+# Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+# Old component name for restart (if empty, use new name)
+OldName=""
+
+
+#========================================================================
+#D-- SRF -
+[SRF]
+WriteFrequency="1M"
+Restart=n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-30
+# Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+#-- Old component name for restart (if empty, use new name)
+OldName=""
+
+#========================================================================
+#D-- SBG - STOMATE
+[SBG]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+#-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+#-- Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- CHM -
+[CHM]
+WriteFrequency="1M"
+Restart=n
+#D-- Last day of the experience used as restart
+RestartDate=2000-01-01
+#D-- Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+#D-- Old component name for restart (if empty, use new name)
+OldName=""
+
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/COMP/inca.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/COMP/inca.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/COMP/inca.card	(revision 2180)
@@ -0,0 +1,38 @@
+#- $Id: inca.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Set climatological to choose if the simulation will use online 10m wind (=y) or offline (=n)
+climatological=n
+# Set climatological to choose the write_frequency for inca output (inca_avgr, forcage, inca_inst)
+# 86400 = daily output
+freq_write_chem=86400
+# heat fluxes computed with feedback corresponding to 0 --> no aerosol effects, 1--> aerosol effects selected by ok_ade, ok_aie
+feedb=0
+
+
+[InitialStateFiles]
+List= ()
+	
+[BoundaryFiles]
+List=	    ()
+
+ListNonDel= ()
+
+
+[ParametersFiles]
+List= (${SUBMIT_DIR}/PARAM/inca.def, .)
+
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List= (NONE) 
+
+
+[OutputText]
+List=()  
+
+[OutputFiles]
+List=	()
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,53 @@
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# manage radiative aerosol effect and ozone 
+flag_aerosol=6
+ok_ade=y
+ok_aie=y
+aerosol_couple=n
+read_climoz=2
+ok_cdnc=y
+
+[InitialStateFiles]
+List= ()
+
+[BoundaryFiles]
+List=   (${R_INIT}/ATM/${config_UserChoices_TagName}/AMIP/amipbc_sst_360x180_${year}.nc, amipbc_sst_1x1.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/AMIP/amipbc_sic_360x180_${year}.nc, amipbc_sic_1x1.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Ozone/HYBRIDE/v2.clim/tro3_${year}.new.nc, climoz.nc)
+
+ListNonDel= (${R_INIT}/ATM/${config_UserChoices_TagName}/Albedo.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/ECDYN.nc.20020101, ECDYN.nc), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/ECPHY.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Relief.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/Rugos.nc, .), \
+	(${R_INIT}/ATM/${config_UserChoices_TagName}/landiceref.nc, .)
+### Please, add the o2a.nc file to fit with the coupled configuration associated
+#	(${R_INIT}/ATM/IPSLCM5A/ORCA2.3x${RESOL_ATM}/o2a.nc, o2a.nc)
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+        (${SUBMIT_DIR}/PARAM/output.def_low        ,  output.def),    \
+	(${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \
+	(${SUBMIT_DIR}/PARAM/run.def, .), \
+	(${SUBMIT_DIR}/PARAM/traceur.def, .)
+
+
+[RestartFiles]
+List= (NONE)
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, output.def)
+
+[OutputFiles]
+List=	( limit.nc,       ${R_OUT_ATM_O}/Boundary/${config_UserChoices_JobName}_${year}_limit.nc,       NONE), \
+	( climoz_LMDZ.nc, ${R_OUT_ATM_O}/Boundary/${config_UserChoices_JobName}_${year}_climoz_LMDZ.nc, NONE), \
+	( start.nc,       ${R_OUT_ATM_O}/Restart/${config_UserChoices_JobName}_${year}_start.nc,        NONE), \
+	( startphy.nc,    ${R_OUT_ATM_O}/Restart/${config_UserChoices_JobName}_${year}_startphy.nc,     NONE), \
+	( grilles_gcm.nc, ${R_OUT_ATM_O}/Grid/${config_UserChoices_JobName}_${year}_grilles_gcm.nc,     NONE)
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/CREATE/config.card	(revision 2180)
@@ -0,0 +1,93 @@
+# $Id$
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+
+#========================================================================
+#D-- UserChoices -
+[UserChoices]
+#============================
+#D-- (<8 chars MAX for JobName)
+JobName=ELI-${RESOL_ATM_3D}
+LongName="create_etat0_limit for interannuel amip run"
+TagName=LMDZORINCA
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZORINCA/CREATE
+#============================
+#D-- leap, noleap, 360d
+CalendarType=noleap
+#D-- Begin and end of job 
+#D-- "YYYY-MM-DD"
+DateBegin=1979-01-01
+DateEnd=2005-12-31
+#============================
+#D-- 1Y, 1M, 5D, 1D
+PeriodLength=1Y
+#============================
+PeriodNb=50
+
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ)
+CHM= (inca, INCA)
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (create_etat0_limit.e, create_etat0_limit.e)
+CHM=("","")
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- If you want a GENERAL RULE FOR RESTARTS, put this flag to 'y'
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=
+#D- Define restart simulation name
+RestartJobName=
+#D- Path Server Group Login
+RestartPath=
+# Attention login depend de la machine
+
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1Y"
+# If config_Restarts_OverRule == 'n' all params are read
+Restart= n
+# Last day of the experience used as restart
+RestartDate=
+# Define restart simulation name
+RestartJobName=
+RestartPath=
+# Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- CHM -
+[CHM]
+#
+WriteFrequency="1Y"
+# If config_Restarts_OverRule == 'n' all params are read
+Restart= n
+# Last day of the experience used as restart
+RestartDate=
+# Define restart simulation name
+RestartJobName=
+RestartPath=
+# Old component name for restart (if empty, use new name)
+OldName=
+
+
+#========================================================================
+#D-- NO Post -
+[Post]
+RebuildFrequency=NONE
+TimeSeriesFrequency=NONE
+SeasonalFrequency=NONE
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/inca.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/inca.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/inca.card	(revision 2180)
@@ -0,0 +1,52 @@
+#- $Id: inca.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Set climatological to choose if the simulation will use online 10m wind (=y) or offline (=n)
+climatological=n
+# Set climatological to choose the write_frequency for inca output (inca_avgr, forcage, inca_inst)
+# 86400 = daily output
+freq_write_chem=86400
+
+
+[InitialStateFiles]
+List= ()
+	
+[BoundaryFiles]
+List=	    ()
+
+ListNonDel= (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/oxydants.nc	,   oxydants.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/npp.nc		,   npp.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/sflx.nc		,   sflx.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/aircraft.nc	,   aircraft.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/landuse.nc	,   landuse.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/andres.nc	,   andres.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/casa_m.nc	,   casa_m.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/taka.nc		,   taka.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/casa_h.nc	,   casa_h.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/phototable_glo.dat   ,   phototable.dat	)
+
+
+[ParametersFiles]
+List= (${SUBMIT_DIR}/PARAM/inca.def, .)
+	
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List= (NONE) 
+
+
+[OutputText]
+List=(inca.out,inca.def)
+
+[OutputFiles]
+List=	(inca_avgr.nc,      ${R_OUT_CHM_O_M}/${PREFIX}_1M_inca_avgr.nc,    Post_1M_inca_avgr  )
+
+[Post_1M_inca_avgr]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter)
+TimeSeriesVars2D = (OD550_ASBCM, OD550_ASPOMM, OD550_ASSO4M, OD550_CSSO4M, OD550_SSSSM, OD550_ASSSM, OD550_CSSSM, OD550_CIDUSTM, OD550_AIBCM, OD550_AIPOMM)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CH4,NO,NO2,CO,O3,HNO3)
+ChunckJob3D = NONE
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,91 @@
+#- $Id: lmdz.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Physics package to use :
+# AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources with 19 or 39 levels
+# NPv3.1 for new physics, to be used with LMDZ5/trunk revision 1554 or later with 39 levels
+LMDZ_Physics=AP
+#LMDZ_Physics=NPv3.1
+
+
+LMDZ_NbPeriod_adjust=3
+# LMDZ_NbPeriod_adjust=0
+# To force usage of this Bands file, put LMDZ_NbPeriod_adjust=0 and replace XXXXXXX by Restart Job Name
+#LMDZ_Bands_file_name=****
+
+# Set ConfType to choose parameters for aerosols, solar and green house gazes. 
+# The parameter file PARAM/config.def_$ConfType will be used.
+# ConfType=preind/actuel/annuel
+ConfType=Anne
+
+# manage radiative aerosol effect and ozone 
+flag_aerosol=0
+ok_ade=n
+ok_aie=n
+aerosol_couple=n
+read_climoz=0
+ok_cdnc=n
+
+# Set OutLevel to choose the level of output files from LMDZ. The file PARAM/output.def_$OutLevel will be used.
+# OutLevel=low/medium/high
+OutLevel=low
+
+# Set COSP activation and Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_COSP_OK=n
+LMDZ_COSP_monthly=n
+LMDZ_COSP_daily=n
+LMDZ_COSP_hf=n
+
+# Set NMC Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_NMC_monthly=n
+LMDZ_NMC_daily=n
+LMDZ_NMC_hf=n
+
+
+# Nugding : ok_guide=y/n
+ok_guide=n
+
+
+[InitialStateFiles]
+# start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job
+List= 	(${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/start.nc	, start.nc	) \
+	(${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/startphy.nc	, startphy.nc	)
+
+
+[BoundaryFiles]
+List=   (${R_BC}/CHM/LMDZORINCA/${RESOL_ATM}_leap/EL-${RESOL_ATM}_${year}1231_limit.nc , limit.nc)
+
+
+#	(${R_BC}/ATM/LMDZORINCA/${RESOL_ATM}/NUDGE_FILES/u_ecmwf_${year}${month}.nc	, u.nc		),\
+#	(${R_BC}/ATM/LMDZORINCA/${RESOL_ATM}/NUDGE_FILES/v_ecmwf_${year}${month}.nc	, v.nc		)
+ 
+ListNonDel= ()
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}	, physiq.def	), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D}            	, gcm.def	), \
+	(${SUBMIT_DIR}/PARAM/run.def					, .		), \
+        (${SUBMIT_DIR}/PARAM/output.def_${OutLevel},                    output.def      ), \
+        (${SUBMIT_DIR}/PARAM/config.def_${ConfType},                    config.def      ), \
+	(${SUBMIT_DIR}/PARAM/guide.def					, .		)
+
+[RestartFiles]
+List=	(restart.nc, restart.nc, start.nc), \
+	(restartphy.nc, restartphy.nc,  startphy.nc) 
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, Bands_${BandsResol}_${NUM_PROC_ATM}prc.dat, config.def, output.def)
+
+
+[OutputFiles]
+List=	(histmth.nc,      ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmth.nc,   Post_1M_histmth   )	
+
+[Post_1M_histmth]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, t2m_max, t2m_min, taux_ter, taux_sic, taux_lic, taux_oce, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card	(revision 2180)
@@ -0,0 +1,68 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# The variable DefSuffix gives the suffix of the orchidee.def file to be used.
+# By default the file orchidee.def_Choi will be selected.
+# Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
+# Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
+DefSuffix=Choi
+
+sechiba_LEVEL=11
+VEGET_UPDATE=1Y
+LAND_COVER_CHANGE=y
+
+[InitialStateFiles]
+List=	(${R_INIT}/SRF/LMDZORINCA/soils_param.nc,      . ), \
+	(${R_INIT}/SRF/LMDZORINCA/routing.nc,          . ), \
+	(${R_BC}/SRF/LMDZORINCA/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+## Pour les annees 2006-2100 suivant le RCP 
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP8.5_MESSAGE/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP4.5_MiniCAM//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP6.0_AIM//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP3-PD_IMAGE//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+
+[BoundaryFiles]
+List= ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=(${R_BC}/SRF/LMDZORINCA/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+## Pour les annees 2006-2100 suivant le RCP 
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP8.5_MESSAGE/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP4.5_MiniCAM//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP6.0_AIM//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP3-PD_IMAGE//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc)
+
+[OutputText]
+List=   (out_orchidee, orchidee.def)
+
+[OutputFiles]
+List=	(sechiba_history.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
+        (sechiba_out_2.nc, ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc, Post_HF_sechiba_out_2), \
+        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc, NONE)
+
+[Post_1M_sechiba_history]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (nobiofrac, alb_nir, alb_vis, bqsb, evap, fluxlat, fluxsens, gqsb, netrad, qair, rain, runoff, snow, snownobio, snowf, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac)
+ChunckJob2D= NONE
+TimeSeriesVars3D= (lai, maxvegetfrac, vegetfrac, CO2FLUX, ptn, nee)
+ChunckJob3D= NONE
+Seasonal= ON
+
+[Post_HF_sechiba_out_2]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (mrsos, mrro)
+ChunckJob2D= 50Y
+TimeSeriesVars3D= (ptn)
+ChunckJob3D= 10Y
+Seasonal= OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/stomate.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/COMP/stomate.card	(revision 2180)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+stomate_LEVEL=10
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=	()
+ListNonDel= (${R_BC}/SRF/LMDZORINCA/reftemp.nc, .)
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(stomate_rest_out.nc, stomate_rest.nc, stomate_rest_in.nc)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=	(stomate_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc, Post_1M_stomate_history) \
+    (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history)
+
+[Post_1M_stomate_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas)
+TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CO2FLUX_MONTHLY,LAI,VEGET,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE)
+ChunckJob3D = NONE
+Seasonal=ON
+
+[Post_1M_stomate_ipcc_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas, CONTFRAC)
+TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
+ChunckJob2D = NONE
+TimeSeriesVars3D=()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/GES/config.card	(revision 2180)
@@ -0,0 +1,150 @@
+#- $Id: config.card 69 2007-06-21 14:08:22Z acosce $
+#========================================================================
+#D-- Carte pour run AR5WERF -- 
+#D-- Les fichiers sflx - aircraft - start - startphy créés par S. Szopa
+#D--
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#========================================================================
+#D-- UserChoices -
+[UserChoices]
+#============================
+#D-- (<8 chars MAX for JobName)
+JobName=L5OI4run
+#SpaceName=TEST
+#ExperimentName=XXXX
+LongName='nouvelles configs + LMDZ5 INCA4 39 '
+TagName=LMDZORINCA/${CHEM}
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZORINCA/GES
+#============================
+#D-- leap, noleap, 360d
+CalendarType=leap
+#D-- Début et fin de Job
+#D-- "YYYY-MM-DD"
+DateBegin=2006-01-01
+DateEnd=2006-12-31
+#============================
+#D-- 1Y, 1M, 5D, 1D
+PeriodLength=1M
+#============================
+#-- PBS Class (required on brodie mono/multi)
+#JobClass=mono
+JobClass=multi
+#============================
+#-- Total Number of Processors (minimum is 2 for a coupled configuration)
+JobNumProcTot=32
+#============================
+#-- Run Options : here for oasis coupling
+#-- For Vargas
+#JobRunOptions=JobRunOptions=''
+#-- For Titane 
+JobRunOptions='"-np "${config_UserChoices_JobNumProcTot}'
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ4)
+SRF= (orchidee, orchidee_1_9_5)
+SBG= (stomate, ORCHIDEE_1_9_5)
+CHM= (inca, INCA3) 
+
+#========================================================================
+#D-- Executable -
+[Executable]
+Name=gcm.e
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (gcm.e, gcm.e)
+SRF= ("", "")
+SBG= ("", "")
+CHM= (inca.dat, inca.dat)
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- If you want a GENERAL RULE FOR RESTARTS, put this flag to 'y'
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=2005-12-31
+#D- Define restart simulation name (=> JOB_OS)
+RestartJobName=LOI_AR5WERF_E0_2006
+#D- Path Server Group Login (=> PSGL)
+RestartPath=/ccc/work/cont003/dsm/p24cozic/INPUT_INCA/IGCM_OUT/LMDZORINCA/NMHC_AER
+# Attention login depend de la machine
+
+#========================================================================
+#D-- Post -
+[Post]
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission
+RebuildFrequency=1Y
+#D- Do we rebuild parallel output from archive
+RebuildFromArchive=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission
+TimeSeriesFrequency=NONE
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average
+SeasonalFrequency=NONE
+#D-
+PackFrequency=1Y
+
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1M 1D HF"
+# If config_Restarts_OverRule == 'n' all params are read
+Restart= n
+# Last day of the experience used as restart
+RestartDate=2000-01-01
+# Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+# Old component name for restart (if empty, use new name)
+OldName=""
+
+
+#========================================================================
+#D-- SRF -
+[SRF]
+WriteFrequency="1M"
+Restart=n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-30
+# Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+#-- Old component name for restart (if empty, use new name)
+OldName=""
+
+#========================================================================
+#D-- SBG - STOMATE
+[SBG]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+#-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+#-- Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- CHM -
+[CHM]
+WriteFrequency="1M"
+Restart=n
+#D-- Last day of the experience used as restart
+RestartDate=2000-01-01
+#D-- Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+#D-- Old component name for restart (if empty, use new name)
+OldName=""
+
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/inca.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/inca.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/inca.card	(revision 2180)
@@ -0,0 +1,52 @@
+#- $Id: inca.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Set climatological to choose if the simulation will use online 10m wind (=y) or offline (=n)
+climatological=n
+# Set climatological to choose the write_frequency for inca output (inca_avgr, forcage, inca_inst)
+# 86400 = daily output
+freq_write_chem=86400
+# heat fluxes computed with feedback corresponding to 0 --> no aerosol effects, 1--> aerosol effects selected by ok_ade, ok_aie
+feedb=0
+
+
+[InitialStateFiles]
+List= ()
+	
+[BoundaryFiles]
+List=	    ()
+
+ListNonDel= (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/npp.nc		,   npp.nc		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/oxydants.nc	,   oxydants.nc		)\
+	    (/ccc/work/cont003/dsm/p24cozic/WORK/INCA_HELIUM/HELIUM/sflx_lmdz_phyHELIUM.nc		,   sflx.nc		)\
+	    (/ccc/work/cont003/dsm/p24cozic/WORK/INCA_HELIUM/HELIUM/Helium_volcanic_lmdz_phy.nc	,   aircraft.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/landuse.nc	,   landuse.nc		),\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/phototable_glo.dat   ,   phototable.dat	)
+
+
+[ParametersFiles]
+List= (${SUBMIT_DIR}/PARAM/inca.def, .)
+
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List= (NONE) 
+
+
+[OutputText]
+List=(inca.out,inca.def)  
+
+[OutputFiles]
+List=	(inca_avgr.nc,      ${R_OUT_CHM_O_M}/${PREFIX}_1M_inca_avgr.nc,    Post_1M_inca_avgr  ),\
+	(forcage.nc,      ${R_OUT_CHM_O_M}/${PREFIX}_1M_forcage.nc,      NONE)
+
+
+[Post_1M_inca_avgr]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter)
+TimeSeriesVars2D = ()
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,91 @@
+#- $Id: lmdz.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Physics package to use :
+# AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources with 19 or 39 levels
+# NPv3.1 for new physics, to be used with LMDZ5/trunk revision 1554 or later with 39 levels
+LMDZ_Physics=AP
+#LMDZ_Physics=NPv3.1
+
+
+LMDZ_NbPeriod_adjust=0
+# LMDZ_NbPeriod_adjust=0
+# To force usage of this Bands file, put LMDZ_NbPeriod_adjust=0 and replace XXXXXXX by Restart Job Name
+#LMDZ_Bands_file_name=/ccc/store/cont003/dsm/p86cozic/IGCM_OUT/LMDZORINCA/AER/L5OI4_Bands/ATM/Debug/L5OI4_Bands_Bands_96x95x39_32prc.dat_1
+
+# Set ConfType to choose parameters for aerosols, solar and green house gazes. 
+# The parameter file PARAM/config.def_$ConfType will be used.
+# ConfType=preind/actuel/annuel
+ConfType=Anne
+
+# manage radiative aerosol effect and ozone 
+flag_aerosol=0
+ok_ade=n
+ok_aie=n
+aerosol_couple=n
+read_climoz=0
+ok_cdnc=n
+
+# Set OutLevel to choose the level of output files from LMDZ. The file PARAM/output.def_$OutLevel will be used.
+# OutLevel=low/medium/high
+OutLevel=low
+
+# Set COSP activation and Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_COSP_OK=n
+LMDZ_COSP_monthly=n
+LMDZ_COSP_daily=n
+LMDZ_COSP_hf=n
+
+# Set NMC Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_NMC_monthly=n
+LMDZ_NMC_daily=n
+LMDZ_NMC_hf=n
+
+
+# Nugding : ok_guide=y/n
+ok_guide=n
+
+
+[InitialStateFiles]
+# start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job
+List= 	(/ccc/work/cont003/dsm/p24cozic/WORK/INCA_HELIUM/HELIUM/restart.nc	, start.nc	) \
+	(/ccc/work/cont003/dsm/p24cozic/WORK/INCA_HELIUM/HELIUM/restartphy.nc	, startphy.nc	)
+
+
+[BoundaryFiles]
+List=   (${R_BC}/CHM/LMDZORINCA/${RESOL_ATM}_leap/EL-${RESOL_ATM}_${year}1231_limit.nc , limit.nc)
+
+
+#	(${R_BC}/ATM/LMDZORINCA/${RESOL_ATM}/NUDGE_FILES/u_ecmwf_${year}${month}.nc	, u.nc		),\
+#	(${R_BC}/ATM/LMDZORINCA/${RESOL_ATM}/NUDGE_FILES/v_ecmwf_${year}${month}.nc	, v.nc		)
+ 
+ListNonDel= ()
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}	, physiq.def	), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D}            	, gcm.def	), \
+	(${SUBMIT_DIR}/PARAM/run.def					, .		), \
+        (${SUBMIT_DIR}/PARAM/output.def_${OutLevel},                    output.def      ), \
+        (${SUBMIT_DIR}/PARAM/config.def_${ConfType},                    config.def      ), \
+	(${SUBMIT_DIR}/PARAM/guide.def					, .		)
+
+[RestartFiles]
+List=	(restart.nc, restart.nc, start.nc), \
+	(restartphy.nc, restartphy.nc,  startphy.nc) 
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, Bands_${BandsResol}_${NUM_PROC_ATM}prc.dat, config.def, output.def)
+
+
+[OutputFiles]
+List=	(histmth.nc,      ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmth.nc,   Post_1M_histmth   )	
+
+[Post_1M_histmth]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, t2m_max, t2m_min, taux_ter, taux_sic, taux_lic, taux_oce, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/orchidee.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/orchidee.card	(revision 2180)
@@ -0,0 +1,68 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# The variable DefSuffix gives the suffix of the orchidee.def file to be used.
+# By default the file orchidee.def_Choi will be selected.
+# Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
+# Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
+DefSuffix=Choi
+
+sechiba_LEVEL=11
+VEGET_UPDATE=1Y
+LAND_COVER_CHANGE=y
+
+[InitialStateFiles]
+List=	(${R_INIT}/SRF/LMDZORINCA/soils_param.nc,      . ), \
+	(${R_INIT}/SRF/LMDZORINCA/routing.nc,          . ), \
+	(${R_BC}/SRF/LMDZORINCA/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+## Pour les annees 2006-2100 suivant le RCP 
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP8.5_MESSAGE/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP4.5_MiniCAM//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP6.0_AIM//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP3-PD_IMAGE//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+
+[BoundaryFiles]
+List= ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=(${R_BC}/SRF/LMDZORINCA/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+## Pour les annees 2006-2100 suivant le RCP 
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP8.5_MESSAGE/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP4.5_MiniCAM//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP6.0_AIM//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP3-PD_IMAGE//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc)
+
+[OutputText]
+List=   (out_orchidee, orchidee.def)
+
+[OutputFiles]
+List=	(sechiba_history.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
+        (sechiba_out_2.nc, ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc, Post_HF_sechiba_out_2), \
+        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc, NONE)
+
+[Post_1M_sechiba_history]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (nobiofrac, alb_nir, alb_vis, bqsb, evap, fluxlat, fluxsens, gqsb, netrad, qair, rain, runoff, snow, snownobio, snowf, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac)
+ChunckJob2D= NONE
+TimeSeriesVars3D= (lai, maxvegetfrac, vegetfrac, CO2FLUX, ptn, nee)
+ChunckJob3D= NONE
+Seasonal= ON
+
+[Post_HF_sechiba_out_2]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (mrsos, mrro)
+ChunckJob2D= 50Y
+TimeSeriesVars3D= (ptn)
+ChunckJob3D= 10Y
+Seasonal= OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/stomate.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/COMP/stomate.card	(revision 2180)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+stomate_LEVEL=10
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=	()
+ListNonDel= (${R_BC}/SRF/LMDZORINCA/reftemp.nc, .)
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(stomate_rest_out.nc, stomate_rest.nc, stomate_rest_in.nc)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=	(stomate_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc, Post_1M_stomate_history) \
+    (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history)
+
+[Post_1M_stomate_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas)
+TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CO2FLUX_MONTHLY,LAI,VEGET,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE)
+ChunckJob3D = NONE
+Seasonal=ON
+
+[Post_1M_stomate_ipcc_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas, CONTFRAC)
+TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
+ChunckJob2D = NONE
+TimeSeriesVars3D=()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/HELIUM/config.card	(revision 2180)
@@ -0,0 +1,138 @@
+#- $Id: config.card 69 2007-06-21 14:08:22Z acosce $
+#========================================================================
+#D-- Carte pour run AR5WERF -- 
+#D-- Les fichiers sflx - aircraft - start - startphy créés par S. Szopa
+#D--
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#========================================================================
+#D-- UserChoices -
+[UserChoices]
+#============================
+#D-- (<8 chars MAX for JobName)
+JobName=L5OI4run
+SpaceName=TEST
+ExperimentName=HELIUM
+LongName='nouvelles configs + LMDZ5 INCA4 39 '
+TagName=LMDZORINCA/${CHEM}
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZORINCA/HELIUM
+#============================
+#D-- leap, noleap, 360d
+CalendarType=leap
+#D-- Début et fin de Job
+#D-- "YYYY-MM-DD"
+DateBegin=2006-01-01
+DateEnd=2006-01-01
+#============================
+#D-- 1Y, 1M, 5D, 1D
+PeriodLength=1D
+#============================
+#-- Total Number of Processors (minimum is 2 for a coupled configuration)
+JobNumProcTot=32
+#============================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ4)
+SRF= (orchidee, orchidee_1_9_5)
+SBG= (stomate, ORCHIDEE_1_9_5)
+CHM= (inca, INCA3) 
+
+#========================================================================
+#D-- Executable -
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (gcm.e, gcm.e)
+SRF= ("", "")
+SBG= ("", "")
+CHM= (inca.dat, inca.dat)
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- If you want a GENERAL RULE FOR RESTARTS, put this flag to 'y'
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=2005-12-31
+#D- Define restart simulation name (=> JOB_OS)
+RestartJobName=LOI_AR5WERF_E0_2006
+#D- Path Server Group Login (=> PSGL)
+RestartPath=/ccc/work/cont003/dsm/p24cozic/INPUT_INCA/IGCM_OUT/LMDZORINCA/NMHC_AER
+# Attention login depend de la machine
+
+#========================================================================
+#D-- Post -
+[Post]
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission
+RebuildFrequency=1D
+#D- Do we rebuild parallel output from archive
+RebuildFromArchive=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission
+TimeSeriesFrequency=NONE
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average
+SeasonalFrequency=NONE
+#D-
+PackFrequency=NONE
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1M 1D HF"
+# If config_Restarts_OverRule == 'n' all params are read
+Restart= n
+# Last day of the experience used as restart
+RestartDate=2000-01-01
+# Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+# Old component name for restart (if empty, use new name)
+OldName=""
+
+
+#========================================================================
+#D-- SRF -
+[SRF]
+WriteFrequency="1M"
+Restart=n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-30
+# Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+#-- Old component name for restart (if empty, use new name)
+OldName=""
+
+#========================================================================
+#D-- SBG - STOMATE
+[SBG]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+#-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+#-- Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- CHM -
+[CHM]
+WriteFrequency="1M"
+Restart=n
+#D-- Last day of the experience used as restart
+RestartDate=2000-01-01
+#D-- Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+#D-- Old component name for restart (if empty, use new name)
+OldName=""
+
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/inca.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/inca.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/inca.card	(revision 2180)
@@ -0,0 +1,61 @@
+#- $Id: inca.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Set climatological to choose if the simulation will use online 10m wind (=y) or offline (=n)
+climatological=n
+# Set climatological to choose the write_frequency for inca output (inca_avgr, forcage, inca_inst)
+# 86400 = daily output
+freq_write_chem=86400
+# heat fluxes computed with feedback corresponding to 0 --> no aerosol effects, 1--> aerosol effects selected by ok_ade, ok_aie
+feedb=0
+
+
+[InitialStateFiles]
+List= ()
+	
+[BoundaryFiles]
+List=	    (/ccc/work/cont003/dsm/p24data/ECMWF320x160/AN${year}/165_${year}${month}.nc      , u10mec.nc)\
+	    (/ccc/work/cont003/dsm/p24data/ECMWF320x160/AN${year}/166_${year}${month}.nc      , v10mec.nc)\
+	    (/ccc/work/cont003/dsm/p24data/ECMWF${RESOL_ATM_XY}/AN${year}/u10m_ecmwf_${year}${month}.nc , u10m.nc  )\
+	    (/ccc/work/cont003/dsm/p24data/ECMWF${RESOL_ATM_XY}/AN${year}/v10m_ecmwf_${year}${month}.nc , v10m.nc  )
+
+ListNonDel= (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/npp.nc		,   npp.nc		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/o3clim.nc	,   o3clim.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/sflx.nc		,   sflx.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/so4.nc		,   so4.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/aircraft.nc	,   aircraft.nc		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/landuse.nc	,   landuse.nc		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/rhvEC.txt	,   rhvEC.txt		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/wthEC.txt	,   wthEC.txt		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/clyEC.txt	,   clyEC.txt		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/wth.dat		,   wth.dat		)\
+            (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/cly.dat		,   cly.dat		)\
+ 	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/rhv.dat		,   rhv.dat		)\
+	    (${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/phototable_glo.dat   ,   phototable.dat	)
+
+
+[ParametersFiles]
+List= (${SUBMIT_DIR}/PARAM/inca.def, .)
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List= (precipinsoil.dat, precipinsoil.dat, precipinsoil.dat) 
+
+
+[OutputText]
+List=(inca.out, inca.def)
+
+[OutputFiles]
+List=	(inca_avgr.nc,      ${R_OUT_CHM_O_M}/${PREFIX}_1M_inca_avgr.nc,    Post_1M_inca_avgr  ),\
+	(forcage.nc,      ${R_OUT_CHM_O_M}/${PREFIX}_1M_forcage.nc,      NONE)
+
+
+[Post_1M_inca_avgr]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter)
+TimeSeriesVars2D = (OD550_ASBCM, OD550_ASPOMM, OD550_ASSO4M, OD550_CSSO4M, OD550_SSSSM, OD550_ASSSM, OD550_CSSSM, OD550_CIDUSTM, OD550_AIBCM, OD550_AIPOMM)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CH4,NO,NO2,CO,O3,HNO3)
+ChunckJob3D = NONE
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/lmdz.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/lmdz.card	(revision 2180)
@@ -0,0 +1,91 @@
+#- $Id: lmdz.card 70 2007-06-21 14:20:42Z acosce $
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# Physics package to use :
+# AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources with 19 or 39 levels
+# NPv3.1 for new physics, to be used with LMDZ5/trunk revision 1554 or later with 39 levels
+LMDZ_Physics=AP
+#LMDZ_Physics=NPv3.1
+
+
+LMDZ_NbPeriod_adjust=3
+# LMDZ_NbPeriod_adjust=0
+# To force usage of this Bands file, put LMDZ_NbPeriod_adjust=0 and replace XXXXXXX by Restart Job Name
+#LMDZ_Bands_file_name=/ccc/store/cont003/dsm/p86cozic/IGCM_OUT/LMDZORINCA/NMHC_AER/L4OI3NA_39_Bands/ATM/Debug/L4OI3NA_39_Bands_Bands_96x95x39_32prc.dat_1
+
+# Set ConfType to choose parameters for aerosols, solar and green house gazes. 
+# The parameter file PARAM/config.def_$ConfType will be used.
+# ConfType=preind/actuel/annuel
+ConfType=Anne
+
+# manage radiative aerosol effect and ozone 
+flag_aerosol=6
+ok_ade=y
+ok_aie=n
+aerosol_couple=y
+read_climoz=0
+ok_cdnc=y
+
+# Set OutLevel to choose the level of output files from LMDZ. The file PARAM/output.def_$OutLevel will be used.
+# OutLevel=low/medium/high
+OutLevel=low
+
+# Set COSP activation and Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_COSP_OK=n
+LMDZ_COSP_monthly=n
+LMDZ_COSP_daily=n
+LMDZ_COSP_hf=n
+
+# Set NMC Outputs frequency (monthly, daily, HF) = y/n
+LMDZ_NMC_monthly=n
+LMDZ_NMC_daily=n
+LMDZ_NMC_hf=n
+
+
+# Nugding : ok_guide=y/n
+ok_guide=n
+
+
+[InitialStateFiles]
+# start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job
+List= 	(${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/start.nc	, start.nc	) \
+	(${R_INIT}/CHM/LMDZORINCA/INCA${RESOL_CHM}/startphy.nc	, startphy.nc	)
+
+
+[BoundaryFiles]
+List=   (${R_BC}/CHM/LMDZORINCA/${RESOL_ATM}_leap/EL-${RESOL_ATM}_${year}1231_limit.nc , limit.nc)
+
+
+#	(${R_BC}/ATM/LMDZORINCA/${RESOL_ATM}/NUDGE_FILES/u_ecmwf_${year}${month}.nc	, u.nc		),\
+#	(${R_BC}/ATM/LMDZORINCA/${RESOL_ATM}/NUDGE_FILES/v_ecmwf_${year}${month}.nc	, v.nc		)
+ 
+ListNonDel= ()
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}	, physiq.def	), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D}            	, gcm.def	), \
+	(${SUBMIT_DIR}/PARAM/run.def					, .		), \
+        (${SUBMIT_DIR}/PARAM/output.def_${OutLevel},                    output.def      ), \
+        (${SUBMIT_DIR}/PARAM/config.def_${ConfType},                    config.def      ), \
+	(${SUBMIT_DIR}/PARAM/guide.def					, .		)
+
+[RestartFiles]
+List=	(restart.nc, restart.nc, start.nc), \
+	(restartphy.nc, restartphy.nc,  startphy.nc) 
+
+[OutputText]
+List=   (physiq.def, gcm.def, run.def, Bands_${BandsResol}_${NUM_PROC_ATM}prc.dat, config.def, output.def)
+
+
+[OutputFiles]
+List=	(histmth.nc,      ${R_OUT_ATM_O_M}/${PREFIX}_1M_histmth.nc,   Post_1M_histmth   )	
+
+[Post_1M_histmth]
+Patches= ()
+GatherWithInternal = (lon, lat, presnivs, time_counter, time_counter_bnds, aire)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, t2m_max, t2m_min, taux_ter, taux_sic, taux_lic, taux_oce, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic)
+ChunckJob2D = NONE
+TimeSeriesVars3D = ()
+ChunckJob3D = NONE
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card	(revision 2180)
@@ -0,0 +1,68 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+# The variable DefSuffix gives the suffix of the orchidee.def file to be used.
+# By default the file orchidee.def_Choi will be selected.
+# Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
+# Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
+DefSuffix=Choi
+
+sechiba_LEVEL=11
+VEGET_UPDATE=1Y
+LAND_COVER_CHANGE=y
+
+[InitialStateFiles]
+List=	(${R_INIT}/SRF/LMDZORINCA/soils_param.nc,      . ), \
+	(${R_INIT}/SRF/LMDZORINCA/routing.nc,          . ), \
+	(${R_BC}/SRF/LMDZORINCA/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+## Pour les annees 2006-2100 suivant le RCP 
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP8.5_MESSAGE/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP4.5_MiniCAM//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP6.0_AIM//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP3-PD_IMAGE//PFTmap_IPCC_${year}.nc, PFTmap.nc)
+
+[BoundaryFiles]
+List= ()
+ListNonDel= ()
+
+[SmoothFiles]
+List=(${R_BC}/SRF/LMDZORINCA/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+## Pour les annees 2006-2100 suivant le RCP 
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP8.5_MESSAGE/PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP4.5_MiniCAM//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP6.0_AIM//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+#(${R_BC}/SRF/LMDZORINCA/PFTmap_2006to2100_AR5_RCP3-PD_IMAGE//PFTmap_IPCC_${year_p1}.nc, PFTmap.nc, 12:12:)
+
+[ParametersFiles]
+List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc)
+
+[OutputText]
+List=   (out_orchidee, orchidee.def)
+
+[OutputFiles]
+List=	(sechiba_history.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
+        (sechiba_out_2.nc, ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc, Post_HF_sechiba_out_2), \
+        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc, NONE)
+
+[Post_1M_sechiba_history]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (nobiofrac, alb_nir, alb_vis, bqsb, evap, fluxlat, fluxsens, gqsb, netrad, qair, rain, runoff, snow, snownobio, snowf, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac)
+ChunckJob2D= NONE
+TimeSeriesVars3D= (lai, maxvegetfrac, vegetfrac, CO2FLUX, ptn, nee)
+ChunckJob3D= NONE
+Seasonal= ON
+
+[Post_HF_sechiba_out_2]
+Patches= ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D= (mrsos, mrro)
+ChunckJob2D= 50Y
+TimeSeriesVars3D= (ptn)
+ChunckJob3D= 10Y
+Seasonal= OFF
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/stomate.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/stomate.card	(revision 2180)
@@ -0,0 +1,47 @@
+[Compatibility]
+libIGCM=1.0
+
+[UserChoices]
+stomate_LEVEL=10
+
+[InitialStateFiles]
+List=   ()
+
+[BoundaryFiles]
+List=	()
+ListNonDel= (${R_BC}/SRF/LMDZORINCA/reftemp.nc, .)
+
+[SmoothFiles]
+List=	()
+
+[ParametersFiles]
+List=   ()
+
+[RestartFiles]
+# List restart that have to be saved/restored each loop (file out, saved, and in) :
+List=	(stomate_rest_out.nc, stomate_rest.nc, stomate_rest_in.nc)
+
+[OutputText]
+List=   ()
+
+[OutputFiles]
+List=	(stomate_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc, Post_1M_stomate_history) \
+    (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history)
+
+[Post_1M_stomate_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas)
+TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
+ChunckJob2D = NONE
+TimeSeriesVars3D = (CO2FLUX_MONTHLY,LAI,VEGET,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE)
+ChunckJob3D = NONE
+Seasonal=ON
+
+[Post_1M_stomate_ipcc_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bnds, Areas, CONTFRAC)
+TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
+ChunckJob2D = NONE
+TimeSeriesVars3D=()
+ChunckJob3D = NONE
+Seasonal=ON
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/config.card
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/config.card	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/EXPERIMENTS/LMDZORINCA/NMHC_AER/config.card	(revision 2180)
@@ -0,0 +1,150 @@
+#- $Id: config.card 69 2007-06-21 14:08:22Z acosce $
+#========================================================================
+#D-- Carte pour run AR5WERF -- 
+#D-- Les fichiers sflx - aircraft - start - startphy créés par S. Szopa
+#D--
+#========================================================================
+#D-- Compatibility -
+[Compatibility]
+libIGCM=1.0
+#========================================================================
+#D-- UserChoices -
+[UserChoices]
+#============================
+#D-- (<8 chars MAX for JobName)
+JobName=L5OI4run
+#SpaceName=TEST
+#ExperimentName=XXXX
+LongName='nouvelles configs + LMDZ5 INCA4 39 '
+TagName=LMDZORINCA/${CHEM}
+#D- Choice of experiment in EXPERIEMENTS directory
+ExpType=LMDZORINCA/NMHC_AER
+#============================
+#D-- leap, noleap, 360d
+CalendarType=leap
+#D-- Début et fin de Job
+#D-- "YYYY-MM-DD"
+DateBegin=2006-01-01
+DateEnd=2006-12-31
+#============================
+#D-- 1Y, 1M, 5D, 1D
+PeriodLength=1M
+#============================
+#-- PBS Class (required on brodie mono/multi)
+#JobClass=mono
+JobClass=multi
+#============================
+#-- Total Number of Processors (minimum is 2 for a coupled configuration)
+JobNumProcTot=32
+#============================
+#-- Run Options : here for oasis coupling
+#-- For Vargas
+#JobRunOptions=JobRunOptions=''
+#-- For Titane 
+JobRunOptions='"-np "${config_UserChoices_JobNumProcTot}'
+#========================================================================
+#D-- ListOfComponents -
+[ListOfComponents]
+#D- For each component, Name of component, Tag of component
+ATM= (lmdz, LMDZ4)
+SRF= (orchidee, orchidee_1_9_5)
+SBG= (stomate, ORCHIDEE_1_9_5)
+CHM= (inca, INCA3) 
+
+#========================================================================
+#D-- Executable -
+[Executable]
+Name=gcm.e
+#D- For each component, Real name of executable, Name of executable for oasis
+ATM= (gcm.e, gcm.e)
+SRF= ("", "")
+SBG= ("", "")
+CHM= (inca.dat, inca.dat)
+
+#========================================================================
+#D-- Restarts -
+[Restarts]
+#D- If you want a GENERAL RULE FOR RESTARTS, put this flag to 'y'
+OverRule=n
+#D- Last day of the experience used as restart
+RestartDate=2005-12-31
+#D- Define restart simulation name (=> JOB_OS)
+RestartJobName=LOI_AR5WERF_E0_2006
+#D- Path Server Group Login (=> PSGL)
+RestartPath=/ccc/work/cont003/dsm/p24cozic/INPUT_INCA/IGCM_OUT/LMDZORINCA/NMHC_AER
+# Attention login depend de la machine
+
+#========================================================================
+#D-- Post -
+[Post]
+#D- Do we rebuild parallel output, this flag determines
+#D- frequency of rebuild submission
+RebuildFrequency=1Y
+#D- Do we rebuild parallel output from archive
+RebuildFromArchive=NONE
+#D- If you want to produce time series, this flag determines
+#D- frequency of post-processing submission
+TimeSeriesFrequency=NONE
+#D- If you want to produce seasonal average, this flag determines
+#D- the period of this average
+SeasonalFrequency=NONE
+#D-
+PackFrequency=1Y
+
+#========================================================================
+#D-- ATM -
+[ATM]
+#
+WriteFrequency="1M 1D HF"
+# If config_Restarts_OverRule == 'n' all params are read
+Restart= n
+# Last day of the experience used as restart
+RestartDate=2000-01-01
+# Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+# Old component name for restart (if empty, use new name)
+OldName=""
+
+
+#========================================================================
+#D-- SRF -
+[SRF]
+WriteFrequency="1M"
+Restart=n
+##-- Last day of the experience used as restart
+RestartDate=1999-12-30
+# Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+#-- Old component name for restart (if empty, use new name)
+OldName=""
+
+#========================================================================
+#D-- SBG - STOMATE
+[SBG]
+WriteFrequency="1M"
+# If config_Restarts_OverRule == 'n' next 4 params are read
+Restart=n
+#-- Last day of the experience used as restart for this component if Restart=y
+RestartDate=2000-01-31
+# Define restart simulation name for this component
+RestartJobName=EXP00
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZOR/DEVT/amip
+#-- Old component name for restart (if empty, use new name)
+OldName=
+
+#========================================================================
+#D-- CHM -
+[CHM]
+WriteFrequency="1M"
+Restart=n
+#D-- Last day of the experience used as restart
+RestartDate=2000-01-01
+#D-- Define restart simulation name
+RestartJobName=JobName
+RestartPath=${ARCHIVE}/IGCM_OUT/LMDZORINCA/NMHC_AER
+#D-- Old component name for restart (if empty, use new name)
+OldName=""
+
+#========================================================================
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/inca.driver
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/inca.driver	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/inca.driver	(revision 2180)
@@ -0,0 +1,119 @@
+#- $Id: inca.driver 119 2007-07-31 13:56:33Z acosce $
+#!/bin/ksh
+
+#D- Driver du script pour INCA
+#-----------------------------------------------------------------
+function INCA_sed_replace
+{
+    IGCM_debug_PushStack "INCA_sed_replace"
+
+    sed -e "s/${2}/${3}/" ${1} > ${1}.tmp
+    RET=$?
+    echo "INCA_sed : ${1} ${2} ${3}"
+    \mv ${1}.tmp ${1}
+
+    IGCM_debug_PopStack "INCA_sed_replace"
+    return $RET
+}
+function INCA_sed_complete
+{
+    IGCM_debug_PushStack "INCA_sed_complete"
+
+    sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp
+    RET=$?
+    echo "INCA_sed : ${1} ${2} ${3}"
+    \mv ${1}.tmp ${1}
+
+    IGCM_debug_PopStack "INCA_sed_complete"
+    return $RET
+}
+
+#-----------------------------------------------------------------
+function CHM_Initialize
+{
+    IGCM_debug_PushStack "CHM_Initialize"
+
+    RESOL_CHM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-FD" '{print $2}')
+
+    [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19
+    RESOL_CHM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' | awk "-F-" '{print $1}')
+    echo 'resol chimie', $RESOL_CHM
+
+    [ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie) 
+    INCA_sed_replace ${SUBMIT_DIR}/config.card \${CHEM} ${CHEM}
+    echo "INCA Tag : LMDZ-INCA" ${config_UserChoices_TagName}
+
+    IGCM_debug_PopStack "CHM_Initialize"
+}
+
+#-----------------------------------------------------------------
+function CHM_Update
+{
+    IGCM_debug_PushStack "CHM_Update"
+
+    case ${CHEM} in 
+	AER)
+	INCA_sed_complete run.def config_inca aero
+	;;
+	NMHC) 
+	INCA_sed_complete run.def config_inca chem
+	;;
+	NMHC_AER)
+	INCA_sed_complete run.def config_inca aero
+	;;
+	CH4)
+	INCA_sed_complete run.def config_inca chem
+	;;
+	CH4_AER)
+	INCA_sed_complete run.def config_inca aero
+	;;
+	GES)
+	INCA_sed_complete run.def config_inca chem
+	;;
+	HELIUM) 
+	INCA_sed_complete run.def config_inca chem
+	esac
+
+	esac
+
+    # inca.def : Activate reading of 10m wind in files if climatological=n in inca.card
+    if [ ! X${inca_UserChoices_climatological} = X ] ; then
+	INCA_sed_complete inca.def climatological  ${inca_UserChoices_climatological}
+    else
+	INCA_sed_complete inca.def climatological  n
+    fi
+
+    # inca.def : choose write frequency for inca_avgr in inca.card
+    if [ ! X${inca_UserChoices_freq_write_chem} = X ] ; then
+	INCA_sed_complete inca.def freq_write_chem  ${inca_UserChoices_freq_write_chem}
+    else
+	INCA_sed_complete inca.def freq_write_chem  86400
+    fi
+
+    #inca.def : choose aerosol effect with feedback variable
+    if [ ! X${inca_UserChoices_feedb} = X ] ; then
+	INCA_sed_complete inca.def feedb  ${inca_UserChoices_feedb}
+    else
+	INCA_sed_complete inca.def feedb  0
+    fi
+    
+
+    IGCM_debug_PopStack "CHM_Update"
+}
+
+#-----------------------------------------------------------------
+function CHM_Finalize
+{
+    IGCM_debug_PushStack "CHM_Finalize"
+
+    echo FINALIZE CHM !!!
+#
+#    IGCM_sys_Mkdir ${R_OUT_EXE}
+#    cd ${MODIPSL}
+#    tar cf src_${config_UserChoices_JobName}.tar  modeles
+#    IGCM_sys_Mv src_${config_UserChoices_JobName}.tar ${R_OUT_EXE}/.
+#    cd -
+#
+
+    IGCM_debug_PopStack "CHM_Finalize"
+}
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/lmdz.driver
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/lmdz.driver	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/lmdz.driver	(revision 2180)
@@ -0,0 +1,674 @@
+#!/bin/ksh
+#-----------------------------------------------------------------
+function LMDZ_sed
+{
+# Usage : LMDZ_sed filedef var_name myvalue
+#         In file filedef modify the line containing var_name=xxx into var_name=myvalue
+    IGCM_debug_PushStack "LMDZ_sed"
+    
+    # Test if the fichier exist
+    if [ ! -f ${1} ] ; then
+	echo "WARNING : ${1} file does not exist. Following will not be done : LMDZ_sed : ${1} ${2} ${3}"
+	return
+    fi
+
+    sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp
+    RET=$?
+    echo "LMDZ_sed : ${1} ${2} ${3}"
+    \mv ${1}.tmp ${1}
+
+    IGCM_debug_PopStack "LMDZ_sed"
+    return $RET
+}
+function LMDZ_sed_default
+{
+# Usage : LMDZ_sed_default filedef var_name
+#         In file filedef modify the line  "var_name=xxx DEFAULT= myvalue"
+#         into "var_name=myvalue"
+    IGCM_debug_PushStack "LMDZ_sed_default"
+
+    DefValue=$( grep ${2} ${1}  | awk -F"DEFAULT.=*" '{print $2}')
+
+    LMDZ_sed  ${1} ${2} $DefValue
+    IGCM_debug_PopStack "LMDZ_sed_default"
+    return $RET
+}
+
+
+function ATM_Initialize
+{
+    IGCM_debug_PushStack "ATM_Initialize"
+
+    RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}')
+
+    [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19
+
+    RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
+    RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
+    RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
+    RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
+
+    ##-- Calendar type for LMDZ and create_etat0_limit
+    case ${config_UserChoices_CalendarType} in
+        leap|gregorian)
+            CalendarTypeForLmdz=earth_366d
+	    CalendarTypeForCreate=gregorian;;
+        noleap)
+            CalendarTypeForLmdz=earth_365d
+            CalendarTypeForCreate=${CalendarTypeForLmdz};;
+        360d)
+            CalendarTypeForLmdz=earth_360d
+            CalendarTypeForCreate=${CalendarTypeForLmdz};;
+        *)
+            CalendarTypeForLmdz=earth_360d
+            CalendarTypeForCreate=${CalendarTypeForLmdz}
+    esac
+
+    ##- LMDZ physics version
+    ##  Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) 
+    if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
+	LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
+    else
+	LMDZ_Physics=AP
+    fi
+    echo LMDZ physics version : ${LMDZ_Physics}
+
+    ##- Create_etat0_limit version
+    ##  Define variable CREATE only if it is set in lmdz.card section UserChoices.
+    ##  This variable is only used in lmdz.card to choose input files.
+    if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
+	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
+	CREATE=${lmdz_UserChoices_CREATE}
+	echo create_etat0_limit version : ${CREATE}
+    fi
+
+
+    ## - LMDZ choice of config.def file
+    ##   ConfType must be set in lmdz.card
+    ConfType=${lmdz_UserChoices_ConfType}
+
+    ##- LMDZ output level, to be set in lmdz.card
+    if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
+	# OutLevel is not set. Take default value low.
+	OutLevel=low
+    else
+	OutLevel=${lmdz_UserChoices_OutLevel}
+    fi
+
+    ##-- Output frequency purpose ....
+    ##--  Initialisation  ....
+    ok_mensuel=n
+    ok_journe=n
+    ok_hf=n
+    ok_hf3h=n
+    ok_hf3hm=n
+    ok_stn=n
+
+    case ${config_UserChoices_PeriodLength} in
+	1Y|1y|1M|1m) ok_mensuel=y ;;
+	5D|5d|1D|1d) ok_journe=y ;;
+    esac
+
+    for frequency in ${config_ATM_WriteFrequency} ; do
+	case ${frequency} in
+	    1M|1m) ok_mensuel=y ;;
+	esac
+	case ${frequency} in
+	    5D|5d|1D|1d) ok_journe=y ;;
+	esac
+	case ${frequency} in
+	    HF|hf) ok_hf=y ;;
+	esac
+	case ${frequency} in 
+	    HF3h|hf3h) ok_hf3h=y ;;
+	esac
+	case ${frequency} in 
+	    HF3hm|hf3hm) ok_hf3hm=y ;;
+	esac
+	case ${frequency} in
+	    STN|stn) ok_stn=y ;;
+	esac
+    done
+
+    ## Read LMDZ_NbPeriod_adjust option in lmdz.card 
+    if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then
+	# The variable is not in lmdz.card, set default value
+	LMDZ_NbPeriod_adjust=0
+    else	
+	LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust}
+    fi
+
+    if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
+	LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name}
+    fi
+
+
+    ##  Read LMDZ_COSP_OK in lmdz.card
+    if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ] ; then
+	LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK}
+    else
+	LMDZ_COSP_OK=n
+    fi
+    ##  Read LMDZ_COSP_monthly in lmdz.card
+    if [ ! X${lmdz_UserChoices_LMDZ_COSP_monthly} = X ] ; then
+	LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly}
+    else
+	LMDZ_COSP_monthly=n
+    fi
+    ##  Read LMDZ_COSP_daily in lmdz.card
+    if [ ! X${lmdz_UserChoices_LMDZ_COSP_daily} = X ] ; then
+	LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily}
+    else
+	LMDZ_COSP_daily=n
+    fi
+    ##  Read LMDZ_COSP_hf in lmdz.card
+    if [ ! X${lmdz_UserChoices_LMDZ_COSP_hf} = X ] ; then
+	LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf}
+    else
+	LMDZ_COSP_hf=n
+    fi
+
+    ##  Read LMDZ_NMC_monthly in lmdz.card
+    if [ ! X${lmdz_UserChoices_LMDZ_NMC_monthly} = X ] ; then
+	LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly}
+    else
+	LMDZ_NMC_monthly=n
+    fi
+
+    ## Read LMDZ_NMC_daily in lmdz.card
+    if [ ! X${lmdz_UserChoices_LMDZ_NMC_daily} = X ] ; then
+	LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily}
+    else
+	LMDZ_NMC_daily=n
+    fi
+    
+    ## Read LMDZ_NMC_hf in lmdz.card
+    if [ ! X${lmdz_UserChoices_LMDZ_NMC_hf} = X ] ; then
+	LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf}
+    else
+	LMDZ_NMC_hf=n
+    fi
+
+
+    IGCM_debug_PopStack "ATM_Initialize"
+}
+
+#-----------------------------------------------------------------
+function ATM_Update
+{
+    IGCM_debug_PushStack "ATM_Update"
+
+
+    case ${config_UserChoices_PeriodLength} in
+        *Y|*y) 
+               LMDZ_ecrit_ISCCP=30.
+               LMDZ_periodav=30.
+               if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then
+                  echo Do not consider following warning if your running create_etat0_limit :
+                  echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d 
+	       fi
+               ;;
+        *)
+               LMDZ_ecrit_ISCCP=${PeriodLengthInDays}.
+               LMDZ_periodav=${PeriodLengthInDays}.
+               ;;
+    esac
+  
+    ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
+    if [ ${CumulPeriod} -eq 1 ] ; then
+	RAZ_DATE=1
+    else
+	RAZ_DATE=0
+    fi
+
+    ## Algorithme for special treatment for Bands_xxx file
+    ## For CumulPeriod=1 ; 
+    ##        IF NbPeriod_Adjust = 0 ; set LMDZ_adjust=n
+    ##                                IF LMDZ_Bands_file_name was given in lmdz.card THEN Get Bands file directly from server. Store it later with _0 suffix.
+    ##                                IF no LMDZ_Bands_file_name was given, start without Bands file. Store it later with _0 suffix.
+    ##        ELSE set LMDZ_adjust=y ; start without Bands file ; Store it later in PARAM/ directory in submit directory with suffix _1 ;
+    ##
+    ## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; 
+    ##       Get Bands file from PARAM/ in submit directory (CumulPeriod-1) ; set LMDZ_adjust=y ; Store Bands file in PARAM/ ;
+    ##
+    ## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from PARAM/ ; Do not store ;
+
+    if [ ${CumulPeriod} -eq 1 ] ; then
+        if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
+	    if [ ! X${LMDZ_Bands_file_name} = X ] ; then
+		IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat 
+		IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
+		IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0"
+	    fi
+        fi
+    fi
+
+    LMDZ_adjust=n
+    [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y
+
+    RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart
+    [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) 
+
+    # Get Bands file from PARAM directory if file exist
+    if ( [ ${CumulPeriod} -gt 1 ] && [ -f ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} ] ) ; then
+        IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
+        IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
+    fi
+
+    ##-- GHG forcing :
+    ##   If forcing file exist in run directory, read values for the current year and modify config.def
+    if [ -f SOLARANDVOLCANOES.txt ] ; then
+	IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
+	LMDZ_sed config.def solaire     ${IPCC_SOLAR}
+    else
+	LMDZ_sed_default config.def solaire
+    fi
+    if [ -f CO2.txt ] ; then
+	IPCC_CO2=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
+	LMDZ_sed config.def co2_ppm     ${IPCC_CO2}
+    else
+	LMDZ_sed_default config.def co2_ppm
+    fi
+
+
+    if [ -f CH4.txt ] ; then
+	IPCC_CH4=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
+	LMDZ_sed config.def CH4_ppb     ${IPCC_CH4}
+    else
+	LMDZ_sed_default config.def CH4_ppb
+    fi
+    if [ -f N2O.txt ] ; then
+	IPCC_N2O=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
+	LMDZ_sed config.def N2O_ppb     ${IPCC_N2O}
+    else
+	LMDZ_sed_default config.def N2O_ppb
+    fi
+    if [ -f CFC11.txt ] ; then
+	IPCC_CFC11=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
+	LMDZ_sed config.def CFC11_ppt   ${IPCC_CFC11}
+    else
+	LMDZ_sed_default config.def CFC11_ppt
+    fi
+    if [ -f CFC12.txt ] ; then
+	IPCC_CFC12=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
+	LMDZ_sed config.def CFC12_ppt   ${IPCC_CFC12}
+    else
+	LMDZ_sed_default config.def CFC12_ppt
+    fi
+
+
+    ##-- Add special treatement for CARBON CYCLE
+    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
+	ATM_Carbon_Update
+    fi
+
+
+    ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate 
+    ##   COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
+    if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] &&  [ ${year} -ge 1979 ]) ; then
+	LMDZ_COSP_daily=y
+    fi
+
+
+    ## output.def parameters
+    #  columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def :  
+    #                                            histmth       histday        histhf    histfh3h   histhf3hm   histstn
+    LMDZ_sed output.def phys_out_filekeys       "${ok_mensuel} ${ok_journe}   ${ok_hf}  ${ok_hf3h} ${ok_hf3hm} ${ok_stn}"
+    LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP}
+    LMDZ_sed output.def ok_cosp     ${LMDZ_COSP_OK}
+    LMDZ_sed output.def ok_mensuelCOSP  ${LMDZ_COSP_monthly}
+    LMDZ_sed output.def ok_journeCOSP   ${LMDZ_COSP_daily}
+    LMDZ_sed output.def ok_hfCOSP   ${LMDZ_COSP_hf}
+    LMDZ_sed output.def ok_histNMC  "${LMDZ_NMC_monthly} ${LMDZ_NMC_daily} ${LMDZ_NMC_hf}"
+
+    ## gcm.def parameters : 
+    # Modification only for new physics
+    if [ X${LMDZ_Physics} = X"NPv3.1" ] ; then
+	LMDZ_sed gcm.def iphysiq     5
+    else
+	LMDZ_sed_default gcm.def iphysiq
+    fi
+
+
+    ## run.def parameters
+    LMDZ_sed run.def dayref   ${InitDay}
+    LMDZ_sed run.def nday     ${PeriodLengthInDays}
+    LMDZ_sed run.def raz_date ${RAZ_DATE}
+    LMDZ_sed run.def periodav ${LMDZ_periodav}
+    LMDZ_sed run.def adjust   ${LMDZ_adjust}
+
+    # Set anneeref different for gcm and ce0l
+    # Variable calend is different for a run with create_etat0_limit and the gcm
+    # Test if executable create_etat0_limit is present and lmdz.x is not present
+    if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
+	# for case ce0l : always take current year
+	LMDZ_sed run.def anneeref ${year}
+	LMDZ_sed run.def calend   ${CalendarTypeForCreate}
+    else
+	# for case gcm : take first year of simulation
+	LMDZ_sed run.def anneeref ${InitYear}
+	LMDZ_sed run.def calend   ${CalendarTypeForLmdz}
+    fi
+
+    # Activate creation of file grilles_gcm.nc only at first period
+    if [ ${CumulPeriod} -eq 1 ] ; then
+	LMDZ_sed run.def grilles_gcm_netcdf y
+    else
+	LMDZ_sed run.def grilles_gcm_netcdf n
+    fi
+
+    ## Determine from the variable ListOfComponents in config.card coupling to external models 
+    ## and set corresponding parameters in run.def
+    echo ListOfComponents now running : ${config_ListOfComponents[*]}
+
+    if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
+	echo "Activate ORCHIDEE: set VEGET=y and add INCLUDEDEF=orchidee.def in run.def"
+	LMDZ_sed run.def VEGET y
+	# Add "INCLUDEDEF=orchidee.def" before the 5th line in run.def
+	sed -i '5iINCLUDEDEF=orchidee.def' run.def
+    else
+	echo "No ORCHIDEE, set VEGET=n in run.def"
+	LMDZ_sed run.def VEGET n
+    fi
+
+    if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
+	echo "Activate coupling to ocean, set type_ocean=couple in run.def"
+	LMDZ_sed run.def type_ocean couple
+    else
+	echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
+	LMDZ_sed run.def type_ocean force
+    fi
+
+    if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
+	echo "Activate coupling to INCA: set type_trac=inca and add INCLUDEDEF=inca.def in run.def"
+	LMDZ_sed run.def type_trac inca
+        # Add "INCLUDEDEF=inca.def" before the 5th line in run.def
+	sed -i '5iINCLUDEDEF=inca.def' run.def
+    elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
+	echo "Activate coupling to REPROBUS: set type_trac=repr and add INCLUDEDEF=reprobus.def in run.def"
+	LMDZ_sed run.def type_trac repr
+        LMDZ_sed run.def config_inca none
+        # Add "INCLUDEDEF=reprobus.def" before the 5th line in run.def
+	sed -i '5iINCLUDEDEF=reprobus.def' run.def
+    else
+	echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
+	LMDZ_sed run.def type_trac lmdz
+        LMDZ_sed run.def config_inca none
+    fi
+
+
+    # config.def : Activate direct radiative effect if ok_ade=y
+    if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then 
+	LMDZ_sed config.def ok_ade ${lmdz_UserChoices_ok_ade}
+    else
+	LMDZ_sed config.def ok_ade n
+    fi 
+
+    # config.def : Activate indirect radiative effect if ok_aie=y
+    if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then 
+	LMDZ_sed config.def ok_aie ${lmdz_UserChoices_ok_aie}
+    else
+	LMDZ_sed config.def ok_aie n
+    fi 
+
+    # config.def : Activate online aerosol coupled model if aerosol_couple=y
+    if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then 
+	LMDZ_sed config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
+    else
+	LMDZ_sed config.def aerosol_couple n
+    fi 
+
+    # config.def : Activate reading of ozone in climatology if read_climoz=2
+    if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then 
+	LMDZ_sed config.def read_climoz ${lmdz_UserChoices_read_climoz}
+    else
+	LMDZ_sed config.def read_climoz 0	
+    fi 
+
+    # config.def : Choose aerosol use in radiative effect 
+    #  type of coupled aerosol =1 (default) =2 => bc  only =3 => pom only =4 => seasalt only 
+    # =5 => dust only =6 => all aerosol    
+    if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then 
+	LMDZ_sed config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
+    else
+	LMDZ_sed config.def flag_aerosol 0
+    fi 
+
+    # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
+    if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then 
+	LMDZ_sed config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
+    else
+	LMDZ_sed config.def ok_cdnc n	
+    fi 
+
+    # guide.def : Activate nudging if ok_guide=y set in lmdz.card
+    if [ X${lmdz_UserChoices_ok_guide} = Xy ] ; then
+        # Set ok_guide=y in guide.def
+	LMDZ_sed guide.def ok_guide  ${lmdz_UserChoices_ok_guide}
+        # Add "INCLUDEDEF=guide.def" before the 5th line in run.def
+	sed -i '5iINCLUDEDEF=guide.def' run.def
+    else
+	LMDZ_sed guide.def ok_guide n
+    fi
+
+    ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
+    ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
+    if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
+	awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
+	IGCM_sys_Mv gcm.def.tmp gcm.def
+	echo
+	IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
+	echo
+	cat gcm.def
+	ByPass_hgardfou_teta=n
+	IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
+    fi
+
+    ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
+    ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
+    if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
+	sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
+        IGCM_sys_Mv gcm.def.tmp gcm.def
+        echo
+        IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
+        echo
+        cat gcm.def
+        ByPass_hgardfou_mats=n
+        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
+    fi
+
+    if ( ${FirstInitialize} ) ; then
+	if [ -f start.nc ] && [ -f startphy.nc ] ; then
+	    # The restart files already exist. They have been copied from a previous run or from a CREATE job
+	    echo "Restart files for LMDZ have been copied from a previous run"
+	elif [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
+	    # Do nothing because it is the program for creating restart files that is running and not LMDZ
+	    echo "create_etat0_limit.e will create initial start files"
+	else
+	    # Restart files have to be created
+	    echo "Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ"
+	    if [ ${DRYRUN} -le 2 ] ; then
+                ##-- suppression of ozone file construction --
+		cp config.def config.def.save
+		LMDZ_sed config.def read_climoz 0
+		IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/.
+		if [ ${DRYRUN} -le 1 ] ; then
+		    ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e
+		    IGCM_sys_Put_Out start.nc    ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc
+		    IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc
+		fi
+		IGCM_sys_Mv config.def.save config.def
+	    else
+		echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated"
+		echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack
+	    fi
+	fi
+    fi
+
+    IGCM_debug_PopStack "ATM_Update"
+}
+
+#-----------------------------------
+function ATM_Finalize
+{
+    IGCM_debug_PushStack "ATM_Finalize"
+
+    # If the file exist, copy Bands_ file to PARAM/ in submit directory. This file will be used for the simulation.
+    # Copy also the same file into ATM/Restart at ARCHIVE directory for backup.
+    if [ -f Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ] ; then 
+      if [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] ; then
+        IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
+        IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
+      elif [ ${CumulPeriod} -eq 1 ] && [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
+        # Special case : first period and no adjust => Save bands file with suffix _0
+        IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
+        IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
+      fi
+    fi
+
+    # Add special treatement for CARBON CYCLE
+    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
+	ATM_Carbon_Finalize
+    fi
+
+    echo FINALIZE ATM !
+
+    IGCM_debug_PopStack "ATM_Finalize"
+}
+
+
+
+function ATM_Carbon_Update
+{
+    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
+
+    IGCM_debug_PushStack "ATM_Carbon_Update"
+
+    typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
+    typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
+    typeset PathCO2log 
+    typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
+    
+    if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
+        ##--Initialization of fluxes to an undefined value at the first run
+	UndefinedValueCo2=-9999
+	InitPeriodCo2=0
+	InitDateBeginCo2=${UndefinedValueCo2}
+	InitYearCo2=$(( ${year} - 1 )) 
+	InitDateEndCo2=${InitYearCo2}1231
+	fCO2_ff=${UndefinedValueCo2} 
+	CO2SBG=${UndefinedValueCo2}
+	CO2LU=${UndefinedValueCo2}
+	CO2MBG=${UndefinedValueCo2}
+	CO2_ppm_prec=${UndefinedValueCo2}
+        # Get the initial value of atmosp. pco2 
+	CO2_ppm=${lmdz_UserChoices_co2_init}
+	
+	IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
+	IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
+	
+        # Save CO2 values in ExeCpuLog variable contents 5 fields
+	echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
+	    gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
+                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
+	
+        # Get the path where the log file co2.log is
+	PathCO2log=${SUBMIT_DIR} 
+        # Get Previous line in co2.log
+	PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
+	
+    else
+	
+	# NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
+        # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
+	#SubmitRestartPath=
+	if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
+	    IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
+	    PathCO2log=${config_ATM_SubmitRestartPath}
+	    Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
+	    PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
+	    
+	    IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
+	    IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
+	    
+            # Save Last Line of control in new co2.log file
+	    InitPeriodCo2=0   
+	    InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' )
+	    InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' )
+	    fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' )
+	    CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' )
+	    CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' )
+	    CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' )
+	    CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' )
+	    CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
+	    
+	    echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
+		gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
+                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
+	else
+           # Get restart line in co2.log
+	    PathCO2log=${SUBMIT_DIR}
+	    PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
+           # Get the value of atmosp. pco2 in co2.log
+	    CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
+	fi
+	
+    fi
+    
+    if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
+	    # Modify co2_ppm in config.def only for historical run
+	    # If not historical run, keep co2_ppm value set earlier by LMDZ_sed
+	LMDZ_sed config.def co2_ppm     ${CO2_ppm}
+    fi
+    IGCM_debug_PopStack "ATM_Carbon_Update"
+}
+
+
+function ATM_Carbon_Finalize
+{
+    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
+
+    IGCM_debug_PushStack "ATM_Carbon_Finalize"
+
+    typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
+    
+	# Fossil fuel emission
+    if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
+            # For Control, no fossil fuel emission :
+	fCO2_ff=0
+	echo "Fossil Fuel for control run  :" ${fCO2_ff}
+    else
+            # For historical, get the fossile fuel file :
+	fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
+	echo "Fossil Fuel for historical run  :" ${fCO2_ff}
+    fi
+    
+        # Get the value of ocean carbon flux
+    CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
+    CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" )
+    echo "Ocean carbon flux  :" ${CO2MBG}
+    
+        # Get the value of land fluxes
+    set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
+    CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" )
+    CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" )
+    CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" )
+    echo "Land carbon flux (NEP)         :" ${CO2SRF}
+    echo "LU flux          (FLUC)        :" ${CO2LU}
+    echo "Total Land carbon flux (NBP)   :" ${CO2SBG}
+    
+        # Previous CO2
+    CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
+    echo "Previous CO2  :" ${CO2_ppm_prec}
+    
+        # Formula
+    CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l )
+    echo "New CO2  :" ${CO2_ppm}
+    
+        # Save CO2 values in ExeCpuLog variable contents 5 fields
+    echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
+	gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
+                           $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
+    
+    IGCM_debug_PopStack "ATM_Carbon_Finalize"
+}
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/orchidee.driver
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/orchidee.driver	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/orchidee.driver	(revision 2180)
@@ -0,0 +1,145 @@
+#!/bin/ksh
+
+#D- Driver du script pour ORCHIDEE
+
+function ORCHIDEE_sed
+{
+    IGCM_debug_PushStack "ORCHIDEE_sed"
+    
+    sed -e "s/^${1}\ *=.*/${1}= ${2}/" \
+	orchidee.def > orchidee.def.tmp
+    RET=$?
+    echo "ORCHIDEE_sed : ${1} ${2}"
+    \mv orchidee.def.tmp orchidee.def
+    
+    IGCM_debug_PopStack "ORCHIDEE_sed"
+    return $RET
+}
+
+#-----------------------------------------------------------------
+function SRF_Initialize
+{
+    IGCM_debug_PushStack "SRF_Initialize"
+
+    RESOL_SRF=ALL
+
+    for frequency in ${config_SRF_WriteFrequency} ; do
+        case ${frequency} in
+            HF|hf) SRF_ok_hf=y ;;
+        esac
+    done
+
+    ##- Define variable DefSuffix set in orchidee.card
+    ##  This variable is used in orchidee.card to choose 
+    ##  parameter file(orchidee.def_DefSuffix). 
+    if [ ! X${orchidee_UserChoices_DefSuffix} = X ] ; then
+	DefSuffix=${orchidee_UserChoices_DefSuffix}
+    else
+	DefSuffix=Choi
+    fi
+
+    IGCM_debug_PopStack "SRF_Initialize"
+}
+
+#-----------------------------------------------------------------
+function SRF_Update
+{
+    IGCM_debug_PushStack "SRF_Update"
+
+    typeset SECHIBA_WRITE_STEP
+
+    SRF_WriteFrequency=$( echo ${config_SRF_WriteFrequency} | sed -e 's/\([0-9]*[yYmMdDs]\).*/\1/' ) 
+    case ${SRF_WriteFrequency} in
+	*Y|*y) 
+	    WriteInYears=$( echo ${SRF_WriteFrequency} | awk -F '[yY]' '{print $1}' )
+	    PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' )
+	    (( SECHIBA_WRITE_STEP = PeriodLengthInDays * WriteInYears / PeriodLengthInYears * 86400 )) ;;
+	1M)
+	    case ${config_UserChoices_PeriodLength} in
+	    *Y|*y)
+		SECHIBA_WRITE_STEP=-1.
+		;;
+	    *M|*m)
+		SECHIBA_WRITE_STEP=-1.
+		;;
+	    *)
+		(( SECHIBA_WRITE_STEP = $( IGCM_date_DaysInMonth $year $month ) * 86400 ))
+		;;
+	    esac
+	    ;;
+	*M|*m) 
+	    WriteInMonths=$( echo ${SRF_WriteFrequency} | awk -F '[mM]' '{print $1}' )
+	    case ${config_UserChoices_PeriodLength} in
+	    *Y|*y)
+		PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' )
+		(( SECHIBA_WRITE_STEP = PeriodLengthInDays * 86400 / PeriodLengthInYears / 12  ))
+		;;
+	    *M|*m)
+		PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' )
+		(( SECHIBA_WRITE_STEP = PeriodLengthInDays * WriteInMonths  * 86400 / PeriodLengthInMonths  ))
+		;;
+	    *)
+		(( SECHIBA_WRITE_STEP = $( IGCM_date_DaysInMonth $year $month ) * 86400 ))
+		;;
+	    esac
+	    ;;
+	5D|5d) 
+	    (( SECHIBA_WRITE_STEP = 5 * 86400 )) ;;
+	1D|1d) 
+	    (( SECHIBA_WRITE_STEP = 86400 )) ;;
+	*s)
+	    WriteInSeconds=$( echo ${SRF_WriteFrequency} | awk -F '[s]' '{print $1}' )
+	    (( SECHIBA_WRITE_STEP = WriteInSeconds )) ;;
+	*) 
+	    IGCM_debug_Exit "SRF_Update " ${SRF_WriteFrequency} " invalid WriteFrequency : choose in 1Y, 1M, 5D, 1D." 
+	    IGCM_debug_Verif_Exit ;;
+    esac
+
+    ORCHIDEE_sed WRITE_STEP ${SECHIBA_WRITE_STEP}
+    ORCHIDEE_sed SECHIBA_HISTLEVEL ${orchidee_UserChoices_sechiba_LEVEL}
+
+    # Outputs HF in HISTFILE2 if required
+    if [ X${SRF_ok_hf} = Xy ] ; then
+	ORCHIDEE_sed SECHIBA_HISTFILE2 y
+    else
+	ORCHIDEE_sed SECHIBA_HISTFILE2 n
+    fi
+    ORCHIDEE_sed SECHIBA_HISTLEVEL2 1
+    ORCHIDEE_sed WRITE_STEP2 10800.0
+
+    if ( [ ${CumulPeriod} -ne 1 ] || [ "${config_SRF_Restart}" != "n" ] ) ; then
+	ORCHIDEE_sed SECHIBA_restart_in sechiba_rest_in.nc
+    else
+	ORCHIDEE_sed SECHIBA_restart_in NONE
+    fi
+
+# Modify in orchidee.def VEGET_UPDATE and LAND_COVER_CHANGE if they are set in orchidee.card section UserChoices
+    if [ ! X${orchidee_UserChoices_VEGET_UPDATE} = X ] ; then
+	ORCHIDEE_sed VEGET_UPDATE   ${orchidee_UserChoices_VEGET_UPDATE}
+    else
+	ORCHIDEE_sed VEGET_UPDATE 0Y
+    fi
+    if [ ! X${orchidee_UserChoices_LAND_COVER_CHANGE} = X ] ; then
+	ORCHIDEE_sed LAND_COVER_CHANGE ${orchidee_UserChoices_LAND_COVER_CHANGE}
+    else
+	ORCHIDEE_sed LAND_COVER_CHANGE n
+    fi
+
+    #IGCM_sys_Cp ${RUN_DIR}/orchidee.def ${RUN_DIR}/run.def
+    #IGCM_sys_Put_Out ${RUN_DIR}/run.def ${R_SAVE}/${PREFIX}_run.def
+
+
+    IGCM_debug_PopStack "SRF_Update"
+}
+
+#-----------------------------------------------------------------
+function SRF_Finalize
+{
+    IGCM_debug_PushStack "SRF_Finalize"
+
+    #IGCM_sys_Put_Out ${RUN_DIR}/used_run.def ${R_SAVE}/${PREFIX}_used_run.def
+
+    echo FINALIZE SRF !!!
+
+    IGCM_debug_PopStack "SRF_Finalize"
+}
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/stomate.driver
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/stomate.driver	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/DRIVER/stomate.driver	(revision 2180)
@@ -0,0 +1,95 @@
+#!/bin/ksh
+
+#D- Driver du script pour ORCHIDEE
+
+#-----------------------------------------------------------------
+function SBG_Initialize
+{
+    IGCM_debug_PushStack "SBG_Initialize"
+
+    RESOL_SBG=ALL
+    
+    IGCM_debug_PopStack "SBG_Initialize"
+}
+
+#-----------------------------------------------------------------
+function SBG_Update
+{
+    IGCM_debug_PushStack "SBG_Update"
+
+    typeset STOMATE_WRITE_STEP
+
+    case ${config_SBG_WriteFrequency} in
+	*Y|*y) 
+	    WriteInYears=$( echo ${config_SBG_WriteFrequency} | awk -F '[yY]' '{print $1}' )
+	    PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' )
+	    (( STOMATE_WRITE_STEP = PeriodLengthInDays * WriteInYears / PeriodLengthInYears )) ;;
+	1M|1m) 
+	    case ${config_UserChoices_PeriodLength} in
+	    *Y|*y)
+		STOMATE_WRITE_STEP=-1.
+		;;
+	    *M|*m)
+		STOMATE_WRITE_STEP=-1.
+		;;
+	    *)
+		(( STOMATE_WRITE_STEP = $( IGCM_date_DaysInMonth $year $month ) )) ;;
+	    esac
+	    ;;
+	*M|*m) 
+	    WriteInMonths=$( echo ${config_SBG_WriteFrequency} | awk -F '[mM]' '{print $1}' )
+	    case ${config_UserChoices_PeriodLength} in
+	    *Y|*y)
+		PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' )
+		(( STOMATE_WRITE_STEP = 30 ))
+		;;
+	    *M|*m)
+		PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' )
+		(( STOMATE_WRITE_STEP = PeriodLengthInDays * WriteInMonths / PeriodLengthInMonths ))
+		;;
+	    *)
+		(( STOMATE_WRITE_STEP = $( IGCM_date_DaysInMonth $year $month ) )) ;;
+	    esac
+	    ;;
+	5D|5d) 
+	    (( STOMATE_WRITE_STEP = 5 )) ;;
+	1D|1d) 
+	    (( STOMATE_WRITE_STEP = 1 )) ;;
+	*s)
+	    WriteInSeconds=$( echo ${config_SBG_WriteFrequency} | awk -F '[s]' '{print $1}' )
+	    (( STOMATE_WRITE_STEP = 1 )) ;;
+	*) 
+	    IGCM_debug_Exit "SBG_Update " ${config_SBG_WriteFrequency} " invalid WriteFrequency : choose in 1Y, 1M, 5D, 1D." 
+	    IGCM_debug_Verif_Exit ;;
+    esac
+
+    ORCHIDEE_sed STOMATE_OK_STOMATE y
+
+    ORCHIDEE_sed STOMATE_HIST_DT ${STOMATE_WRITE_STEP}
+    ORCHIDEE_sed STOMATE_HISTLEVEL ${stomate_UserChoices_stomate_LEVEL}
+
+    if ( [ ${CumulPeriod} -eq 1 ] && [ "${config_SBG_Restart}" = "n" ] ) ; then
+	echo "STOMATE : without restart"
+	ORCHIDEE_sed STOMATE_RESTART_FILEIN NONE
+    else
+	ORCHIDEE_sed STOMATE_RESTART_FILEIN stomate_rest_in.nc
+    fi
+
+    IGCM_debug_PopStack "SBG_Update"
+}
+
+#-----------------------------------------------------------------
+function SBG_Finalize
+{
+#set -vx
+    IGCM_debug_PushStack "SBG_Finalize"
+
+    if [ $( IGCM_date_DaysBetweenGregorianDate ${PeriodDateEnd} ${year}1230 ) -ge 0 ] ; then
+	IGCM_sys_Put_Out stomate_Cforcing.nc ${R_OUT_SBG_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_stomate_Cforcing.nc
+	IGCM_sys_Put_Out stomate_forcing.nc  ${R_OUT_SBG_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_stomate_forcing.nc
+# 	rm -f stomate_Cforcing.nc
+# 	rm -f stomate_forcing.nc
+    fi
+
+    IGCM_debug_PopStack "SBG_Finalize"
+}
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_Anne
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_Anne	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_Anne	(revision 2180)
@@ -0,0 +1,62 @@
+##  Cycle diurne  ou non                 
+cycle_diurne=y
+##  Soil Model  ou non               
+soil_model=y
+
+## Nombre  d'appels des routines de rayonnements ( par jour)                 
+nbapp_rad=24
+
+##  Facteur additif pour l'albedo
+pmagic=0.
+
+#
+# Parametres "orbitaux/ ere geologique"
+#
+### R_ecc =      Excentricite
+R_ecc = 0.016715
+### R_peri =     Equinoxe
+R_peri = 102.7
+### R_incl =     Inclinaison
+R_incl = 23.441
+### solaire =    Constante solaire
+solaire = _AUTO_ : DEFAULT = 1365
+#
+# Taux gaz a effet de serre
+#
+### co2_ppm =    taux CO2 en ppm
+co2_ppm = _AUTO_: DEFAULT = 348.
+### CH4_ppb =    taux CH4 en ppb
+CH4_ppb = _AUTO_ : DEFAULT = 1650.
+### N2O_ppb =    taux N2O en ppb
+N2O_ppb = _AUTO_ : DEFAULT = 306.
+### CFC11_ppt =  taux CFC11 en ppt
+CFC11_ppt = _AUTO_ : DEFAULT = 280.
+### CFC12_ppt =  taux CFC12 en ppt
+CFC12_ppt = _AUTO_ : DEFAULT = 484
+#
+# Parametres effets directs/indirects des "aerosols"
+#
+### ok_ade=y/n   flag Aerosol direct effect
+ok_ade=_AUTO_
+### ok_aie=y/n   flag Aerosol indirect effect
+ok_aie=_AUTO_
+### aerosol coupling = online (y) or offline (n)
+aerosol_couple=_AUTO_
+###  If aerosol offline : aer_type =   Aerosol variation type : actuel / preind / scenario / annuel
+aer_type=scenario
+###  type of coupled aerosol =1 (default) =2 => bc  only =3 => pom only =4 => seasalt only =5 => dust only =6 => all aerosol
+flag_aerosol=_AUTO_ 
+### ok_cdnc=y/n  Cloud droplet number concentration
+ok_cdnc=_AUTO_
+### bl95_b0 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b0=1.7
+### bl95_b1 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b1=0.2
+#
+# Parametre de lecture de l'ozone
+#
+# Allowed values are 0, 1 and 2
+# 0: do not read an ozone climatology
+# 1: read a single ozone climatology that will be used day and night
+# 2: read two ozone climatologies, the average day and night climatology and the daylight climatology
+read_climoz=_AUTO_
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_L19
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_L19	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_L19	(revision 2180)
@@ -0,0 +1,63 @@
+##  Cycle diurne  ou non                 
+cycle_diurne=y
+##  Soil Model  ou non               
+soil_model=y
+
+## Nombre  d'appels des routines de rayonnements ( par jour)                 
+nbapp_rad=12
+
+##  Facteur additif pour l'albedo
+pmagic=0.008
+
+#
+# Parametres "orbitaux/ ere geologique"
+#
+### R_ecc =      Excentricite
+R_ecc = 0.016715
+### R_peri =     Equinoxe
+R_peri = 102.7
+### R_incl =     Inclinaison
+R_incl = 23.441
+### solaire =    Constante solaire
+solaire = _AUTO_: DEFAULT = 1361.
+#
+# Taux gaz a effet de serre
+#
+### co2_ppm =    taux CO2 en ppm
+co2_ppm = _AUTO_: DEFAULT = 367.
+### CH4_ppb =    taux CH4 en ppb
+CH4_ppb = _AUTO_: DEFAULT = 1760.
+### N2O_ppb =    taux N2O en ppb
+N2O_ppb = _AUTO_: DEFAULT = 316.
+### CFC11_ppt =  taux CFC11 en ppt
+CFC11_ppt = _AUTO_: DEFAULT = 741.2
+### CFC12_ppt =  taux CFC12 en ppt
+CFC12_ppt = _AUTO_: DEFAULT = 535.
+#
+# Parametres effets directs/indirects des "aerosols"
+#
+### ok_ade=y/n   flag Aerosol direct effect
+ok_ade=_AUTO_
+### ok_aie=y/n   flag Aerosol indirect effect
+ok_aie=_AUTO_
+### aer_type =   Aerosol variation type : actuel / preind / scenario / annuel
+aer_type=actuel
+### aerosol coupling = online (y) or offline (n)
+aerosol_couple=_AUTO_
+###  flag_aerosol = type of coupled aerosol, if aerosol offline 
+###  0 => no aerosol, 1 => sulfate only, 2 => bc only, 3 => pom only, 4 => seasalt only, 5 => dust only, 6 => all aerosol
+flag_aerosol=_AUTO_
+### ok_cdnc=y/n   Cloud droplet number concentration
+ok_cdnc=_AUTO_
+### bl95_b0 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b0=1.7
+### bl95_b1 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b1=0.2
+#
+# Parametre de lecture de l'ozone
+#
+# Allowed values are 0, 1 and 2
+# 0: do not read an ozone climatology
+# 1: read a single ozone climatology that will be used day and night
+# 2: read two ozone climatologies, the average day and night climatology and the daylight climatology
+read_climoz=_AUTO_
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_actuel
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_actuel	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_actuel	(revision 2180)
@@ -0,0 +1,63 @@
+##  Cycle diurne  ou non                 
+cycle_diurne=y
+##  Soil Model  ou non               
+soil_model=y
+
+## Nombre  d'appels des routines de rayonnements ( par jour)                 
+nbapp_rad=24
+
+##  Facteur additif pour l'albedo
+pmagic=0.008
+
+#
+# Parametres "orbitaux/ ere geologique"
+#
+### R_ecc =      Excentricite
+R_ecc = 0.016715
+### R_peri =     Equinoxe
+R_peri = 102.7
+### R_incl =     Inclinaison
+R_incl = 23.441
+### solaire =    Constante solaire
+solaire = _AUTO_ : DEFAULT = 1366.0896
+#
+# Taux gaz a effet de serre
+#
+### co2_ppm =    taux CO2 en ppm
+co2_ppm = _AUTO_: DEFAULT = 0.36886500E+03
+### CH4_ppb =    taux CH4 en ppb
+CH4_ppb = _AUTO_ : DEFAULT = 0.17510225E+04
+### N2O_ppb =    taux N2O en ppb
+N2O_ppb = _AUTO_ : DEFAULT = 0.31585000E+03
+### CFC11_ppt =  taux CFC11 en ppt
+CFC11_ppt = _AUTO_ : DEFAULT = 5.18015181E+01
+### CFC12_ppt =  taux CFC12 en ppt
+CFC12_ppt = _AUTO_ : DEFAULT = 0.99862742E+03
+#
+# Parametres effets directs/indirects des "aerosols"
+#
+### ok_ade=y/n   flag Aerosol direct effect
+ok_ade=_AUTO_
+### ok_aie=y/n   flag Aerosol indirect effect
+ok_aie=_AUTO_
+### aer_type =   Aerosol variation type : actuel / preind / scenario / annuel
+aer_type=actuel
+### aerosol coupling = online (y) or offline (n)
+aerosol_couple=_AUTO_
+###  flag_aerosol = type of coupled aerosol, if aerosol offline 
+###  0 => no aerosol, 1 => sulfate only, 2 => bc only, 3 => pom only, 4 => seasalt only, 5 => dust only, 6 => all aerosol
+flag_aerosol=_AUTO_ 
+### ok_cdnc=y/n   Cloud droplet number concentration
+ok_cdnc=_AUTO_
+### bl95_b0 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b0=1.7
+### bl95_b1 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b1=0.2
+#
+# Parametre de lecture de l'ozone
+#
+# Allowed values are 0, 1 and 2
+# 0: do not read an ozone climatology
+# 1: read a single ozone climatology that will be used day and night
+# 2: read two ozone climatologies, the average day and night climatology and the daylight climatology
+read_climoz=_AUTO_
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_annuel
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_annuel	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_annuel	(revision 2180)
@@ -0,0 +1,63 @@
+##  Cycle diurne  ou non                 
+cycle_diurne=y
+##  Soil Model  ou non               
+soil_model=y
+
+## Nombre  d'appels des routines de rayonnements ( par jour)                 
+nbapp_rad=24
+
+##  Facteur additif pour l'albedo
+pmagic=0.0
+
+#
+# Parametres "orbitaux/ ere geologique"
+#
+### R_ecc =      Excentricite
+R_ecc = 0.016715
+### R_peri =     Equinoxe
+R_peri = 102.7
+### R_incl =     Inclinaison
+R_incl = 23.441
+### solaire =    Constante solaire
+solaire = _AUTO_ 
+#
+# Taux gaz a effet de serre
+#
+### co2_ppm =    taux CO2 en ppm
+co2_ppm = _AUTO_
+### CH4_ppb =    taux CH4 en ppb
+CH4_ppb = _AUTO_
+### N2O_ppb =    taux N2O en ppb
+N2O_ppb = _AUTO_
+### CFC11_ppt =  taux CFC11 en ppt
+CFC11_ppt = _AUTO_
+### CFC12_ppt =  taux CFC12 en ppt
+CFC12_ppt = _AUTO_
+#
+# Parametres effets directs/indirects des "aerosols"
+#
+### ok_ade=y/n   flag Aerosol direct effect
+ok_ade=_AUTO_
+### ok_aie=y/n   flag Aerosol indirect effect
+ok_aie=_AUTO_
+### aer_type =   Aerosol variation type : actuel / preind / scenario / annuel
+aer_type=annuel
+### aerosol coupling = online (y) or offline (n)
+aerosol_couple=_AUTO_
+###  flag_aerosol = type of coupled aerosol, if aerosol offline 
+###  0 => no aerosol, 1 => sulfate only, 2 => bc only, 3 => pom only, 4 => seasalt only, 5 => dust only, 6 => all aerosol
+flag_aerosol=_AUTO_ 
+### ok_cdnc=y/n   Cloud droplet number concentration
+ok_cdnc=_AUTO_
+### bl95_b0 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b0=1.7
+### bl95_b1 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b1=0.2
+#
+# Parametre de lecture de l'ozone
+#
+# Allowed values are 0, 1 and 2
+# 0: do not read an ozone climatology
+# 1: read a single ozone climatology that will be used day and night
+# 2: read two ozone climatologies, the average day and night climatology and the daylight climatology
+read_climoz=_AUTO_
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_preind
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_preind	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/config.def_preind	(revision 2180)
@@ -0,0 +1,63 @@
+##  Cycle diurne  ou non                 
+cycle_diurne=y
+##  Soil Model  ou non               
+soil_model=y
+
+## Nombre  d'appels des routines de rayonnements ( par jour)                 
+nbapp_rad=24
+
+##  Facteur additif pour l'albedo
+pmagic=0.0
+
+#
+# Parametres "orbitaux/ ere geologique"
+#
+### R_ecc =      Excentricite
+R_ecc = 0.016715
+### R_peri =     Equinoxe
+R_peri = 102.7
+### R_incl =     Inclinaison
+R_incl = 23.441
+### solaire =    Constante solaire
+solaire = _AUTO_: DEFAULT = 1365.6537
+#
+# Taux gaz a effet de serre
+#
+### co2_ppm =    taux CO2 en ppm
+co2_ppm = _AUTO_: DEFAULT = 0.28472500E+03
+### CH4_ppb =    taux CH4 en ppb
+CH4_ppb = _AUTO_: DEFAULT = 0.79097924E+03
+### N2O_ppb =    taux N2O en ppb
+N2O_ppb = _AUTO_: DEFAULT = 0.27542506E+03
+### CFC11_ppt =  taux CFC11 en ppt
+CFC11_ppt = _AUTO_: DEFAULT = 0.
+### CFC12_ppt =  taux CFC12 en ppt
+CFC12_ppt = _AUTO_: DEFAULT = 0.
+#
+# Parametres effets directs/indirects des "aerosols"
+#
+### ok_ade=y/n   flag Aerosol direct effect
+ok_ade=_AUTO_
+### ok_aie=y/n   flag Aerosol indirect effect
+ok_aie=_AUTO_
+### aer_type =   Aerosol variation type : actuel / preind / scenario / annuel
+aer_type=preind
+### aerosol coupling = online (y) or offline (n)
+aerosol_couple=_AUTO_
+###  flag_aerosol = type of coupled aerosol, if aerosol offline 
+###  0 => no aerosol, 1 => sulfate only, 2 => bc only, 3 => pom only, 4 => seasalt only, 5 => dust only, 6 => all aerosol
+flag_aerosol=_AUTO_
+### ok_cdnc=y/n   Cloud droplet number concentration
+ok_cdnc=_AUTO_
+### bl95_b0 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b0=1.7
+### bl95_b1 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
+bl95_b1=0.2
+#
+# Parametre de lecture de l'ozone
+#
+# Allowed values are 0, 1 and 2
+# 0: do not read an ozone climatology
+# 1: read a single ozone climatology that will be used day and night
+# 2: read two ozone climatologies, the average day and night climatology and the daylight climatology
+read_climoz=_AUTO_
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/cosp_input_nl.txt
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/cosp_input_nl.txt	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/cosp_input_nl.txt	(revision 2180)
@@ -0,0 +1,103 @@
+! (c) British Crown Copyright 2008, the Met Office.
+! All rights reserved.
+! 
+! Redistribution and use in source and binary forms, with or without modification, are permitted 
+! provided that the following conditions are met:
+! 
+!     * Redistributions of source code must retain the above copyright notice, this list 
+!       of conditions and the following disclaimer.
+!     * Redistributions in binary form must reproduce the above copyright notice, this list
+!       of conditions and the following disclaimer in the documentation and/or other materials 
+!       provided with the distribution.
+!     * Neither the name of the Met Office nor the names of its contributors may be used 
+!       to endorse or promote products derived from this software without specific prior written 
+!       permission.
+! 
+! THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR 
+! IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND 
+! FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR 
+! CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL 
+! DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, 
+! DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER 
+! IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 
+! OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+! Namelist that sets up the main COSP options
+&COSP_INPUT
+  CMOR_NL='./cmor/cosp_cmor_nl.txt', ! CMOR namelist
+  NPOINTS_IT=10000,! Max number of gridpoints to be processed in one iteration
+  NCOLUMNS=20,  ! Number of subcolumns
+  NLEVELS=39,   ! Number of model levels 
+  USE_VGRID=.true., ! Use fixed vertical grid for outputs? (if .true. then you need to define number of levels with Nlr)
+  NLR=40,       ! Number of levels in statistical outputs (only used if USE_VGRID=.true.)
+  CSAT_VGRID=.true., ! CloudSat vertical grid? (if .true. then the CloudSat standard grid is used for the outputs.
+                     !  USE_VGRID needs also be .true.)
+  FINPUT='histday.nc', ! NetCDF file with 1D inputs
+!  FINPUT='cosp_input_um_2d.nc', ! NetCDF file with 2D inputs
+  !----------------------------------------------------------------------------------
+  !--------------- Inputs related to radar simulations
+  !----------------------------------------------------------------------------------
+  RADAR_FREQ=94.0, ! CloudSat radar frequency (GHz)
+  SURFACE_RADAR=0, ! surface=1, spaceborne=0
+  use_mie_tables=0,! use a precomputed lookup table? yes=1,no=0
+  use_gas_abs=1,   ! include gaseous absorption? yes=1,no=0
+  do_ray=0,        ! calculate/output Rayleigh refl=1, not=0
+  melt_lay=0,      ! melting layer model off=0, on=1
+  k2=-1,           ! |K|^2, -1=use frequency dependent default
+  use_reff=.true., ! True if you want effective radius to be used by radar simulator (always used by lidar)
+  use_precipitation_fluxes=.true.,  ! True if precipitation fluxes are input to the algorithm 
+  !----------------------------------------------------------------------------------
+  !---------------- Inputs related to lidar simulations
+  !----------------------------------------------------------------------------------
+  Nprmts_max_hydro=12, ! Max number of parameters for hydrometeor size distributions
+  Naero=1,             ! Number of aerosol species (Not used)
+  Nprmts_max_aero=1,   ! Max number of parameters for aerosol size distributions (Not used)
+  lidar_ice_type=0,    ! Ice particle shape in lidar calculations (0=ice-spheres ; 1=ice-non-spherical)
+  OVERLAP=3,   !  overlap type: 1=max, 2=rand, 3=max/rand
+  !----------------------------------------------------------------------------------
+  !---------------- Inputs related to ISCCP simulator
+  !----------------------------------------------------------------------------------
+  ISCCP_TOPHEIGHT=1,  !  1 = adjust top height using both a computed
+                       !  infrared brightness temperature and the visible
+                       !  optical depth to adjust cloud top pressure. Note
+                       !  that this calculation is most appropriate to compare
+                       !  to ISCCP data during sunlit hours.
+                      !  2 = do not adjust top height, that is cloud top
+                       !  pressure is the actual cloud top pressure
+                       !  in the model
+                      !  3 = adjust top height using only the computed
+                       !  infrared brightness temperature. Note that this
+                       !  calculation is most appropriate to compare to ISCCP
+                       !  IR only algortihm (i.e. you can compare to nighttime
+                       !  ISCCP data with this option)
+  ISCCP_TOPHEIGHT_DIRECTION=2,   ! direction for finding atmosphere pressure level
+                                 ! with interpolated temperature equal to the radiance
+                                 ! determined cloud-top temperature
+                                 ! 1 = find the *lowest* altitude (highest pressure) level
+                                 ! with interpolated temperature equal to the radiance
+                                 ! determined cloud-top temperature
+                                 ! 2 = find the *highest* altitude (lowest pressure) level
+                                 ! with interpolated temperature equal to the radiance 
+                                 ! determined cloud-top temperature
+                                 ! ONLY APPLICABLE IF top_height EQUALS 1 or 3
+                                 ! 1 = default setting, and matches all versions of 
+                                 ! ISCCP simulator with versions numbers 3.5.1 and lower
+                                 ! 2 = experimental setting  
+  !----------------------------------------------------------------------------------
+  !-------------- RTTOV inputs
+  !----------------------------------------------------------------------------------
+  Platform=1,    ! satellite platform
+  Satellite=15,  ! satellite
+  Instrument=0,  ! instrument
+  Nchannels=8,   ! Number of channels to be computed
+  Channels=1,3,5,6,8,10,11,13,        ! Channel numbers (please be sure that you supply Nchannels)
+  Surfem=0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,  ! Surface emissivity (please be sure that you supply Nchannels)
+  ZenAng=50.0, ! Satellite Zenith Angle
+  CO2=5.241e-04, ! Mixing ratios of trace gases
+  CH4=9.139e-07,
+  N2O=4.665e-07,
+  CO=2.098e-07
+/
+
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/cosp_output_nl.txt
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/cosp_output_nl.txt	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/cosp_output_nl.txt	(revision 2180)
@@ -0,0 +1,63 @@
+! (c) British Crown Copyright 2008, the Met Office.
+! All rights reserved.
+! 
+! Redistribution and use in source and binary forms, with or without modification, are permitted 
+! provided that the following conditions are met:
+! 
+!     * Redistributions of source code must retain the above copyright notice, this list 
+!       of conditions and the following disclaimer.
+!     * Redistributions in binary form must reproduce the above copyright notice, this list
+!       of conditions and the following disclaimer in the documentation and/or other materials 
+!       provided with the distribution.
+!     * Neither the name of the Met Office nor the names of its contributors may be used 
+!       to endorse or promote products derived from this software without specific prior written 
+!       permission.
+! 
+! THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR 
+! IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND 
+! FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR 
+! CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL 
+! DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, 
+! DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER 
+! IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 
+! OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+! Namelist that sets up output-related variables. It controls 
+! the instrument simulators to run and the list of variables 
+! to be written to file
+&COSP_OUTPUT
+  ! Simulator flags
+  Lradar_sim=.false.,
+  Llidar_sim=.true.,
+  Lisccp_sim=.true.,
+  Lmisr_sim=.false.,
+  ! Output variables
+  Lalbisccp=.true.,
+  Latb532=.false.,
+  Lboxptopisccp=.true.,
+  Lboxtauisccp=.true.,
+  Lcfad_dbze94=.false.,
+  Lcfad_lidarsr532=.true.,
+  Lclcalipso=.true.,
+  Lclhcalipso=.true.,
+  Lclisccp2=.true.,
+  Lcllcalipso=.true.,
+  Lclmcalipso=.true.,
+  Lcltcalipso=.true.,
+  Lctpisccp=.true.,
+  Ldbze94=.false.,
+  Ltauisccp=.true.,
+  Ltclisccp=.true.,
+  Llongitude=.false.,
+  Llatitude=.false.,
+  Lparasol_refl=.true.,
+  LclMISR=.false.,
+  Lmeantbisccp=.true.,
+  Lmeantbclrisccp=.true.,
+  ! Use lidar and radar
+  Lclcalipso2=.false.,
+  Lcltlidarradar=.false.,
+  ! These are provided for debugging or special purposes
+  Lfrac_out=.false.,
+  Lbeta_mol532=.false.,  
+/
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_144x142x19
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_144x142x19	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_144x142x19	(revision 2180)
@@ -0,0 +1,54 @@
+## $Id$
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=720
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=3600.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=5400.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=5400.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
+purmats=n
+## avec ou sans physique                                                 
+physic=y
+## periode de la physique (en pas)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 15
+##  Avec ou sans strato
+ok_strato=n
+#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
+iflag_top_bound=1
+#  Coefficient pour la couche eponge (valeur derniere couche)
+tau_top_bound=1.e-5
+## longitude en degres du centre du zoom                                 
+clon=0.
+## latitude en degres du centre du zoom                                  
+clat=0.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=1.0
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=1.0
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.0
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.0
+##raideur du zoom en  X
+taux=3.
+##raideur du zoom en  Y
+tauy=3.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_144x142x39
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_144x142x39	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_144x142x39	(revision 2180)
@@ -0,0 +1,54 @@
+## $Id$
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=720
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=3600.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=5400.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=5400.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
+purmats=n
+## avec ou sans physique                                                 
+physic=y
+## periode de la physique (en pas)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 15
+##  Avec ou sans strato
+ok_strato=y
+#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
+iflag_top_bound=2
+#  Coefficient pour la couche eponge (valeur derniere couche)
+tau_top_bound=5.e-5
+## longitude en degres du centre du zoom                                 
+clon=0.
+## latitude en degres du centre du zoom                                  
+clat=0.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=1.0
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=1.0
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.0
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.0
+##raideur du zoom en  X
+taux=3.
+##raideur du zoom en  Y
+tauy=3.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_56x55x19
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_56x55x19	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_56x55x19	(revision 2180)
@@ -0,0 +1,72 @@
+## $Header: /home/ioipsl/CVSROOT/IPSLCM4_v1_OASIS3/EXP00/gcm.def_ORCA4xLMD7245,v 1.1.1.1 2005/03/23 15:44:29 adm Exp $
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=240
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=36000.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=18000.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=18000.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
+purmats=n
+## avec ou sans physique                                                 
+physic=y
+## periode de la physique (en pas)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 5
+##  Activation ou non de la parametrisation de Hines pour la strato
+ok_strato=n
+#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
+iflag_top_bound=1
+#  Coefficient pour la couche eponge (valeur derniere couche)
+tau_top_bound=1.e-5
+## longitude en degres du centre du zoom                                 
+clon=0.
+## latitude en degres du centre du zoom                                  
+clat=0.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=1.0
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=1.0
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.0
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.0
+##raideur du zoom en  X
+taux=3.
+##raideur du zoom en  Y
+tauy=3.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
+##  [FC] Transport par les ondes stationnaires selon Francis Codron
+##  Choix possibles :
+##Â  * dissuv=y, diss_uvwin=n, dissuvz=n (local)
+##  * dissuv=n, diss_uvwin=n, dissuvz=y (moyenne zonale)
+##  * dissuv=y, diss_uvwin=y, dissuvz=n (lissage sur 120Â° de longitude)
+##Â  Dans le permier cas, mettre fact_uv Ã  0.2 ou 0.3 dans dissip_p.F,
+##  sinon c'est un peu fort...
+dissuv=n
+diss_uvwin=n
+dissuvz=n
+## [FC] fichiers instantanes de controle une fois par jour
+out_diss=n
+## Orosm pour le lissage de l'orog.
+ok_orosm=n
+# GKLIFT : Gravity Wave Drag calculation parameter
+GKLIFT=0.5
+## Fract pour le fractionnement des mailles
+ok_fract=.true.
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x71x19
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x71x19	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x71x19	(revision 2180)
@@ -0,0 +1,54 @@
+## $Id$
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=480
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=10800.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=18000.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=18000.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
+purmats=n
+## avec ou sans physique                                                 
+physic=y
+## periode de la physique (en pas)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 10
+##  Avec ou sans strato
+ok_strato=n
+#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
+iflag_top_bound=1
+#  Coefficient pour la couche eponge (valeur derniere couche)
+tau_top_bound=1.e-5
+## longitude en degres du centre du zoom                                 
+clon=0.
+## latitude en degres du centre du zoom                                  
+clat=0.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=1.0
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=1.0
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.0
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.0
+##raideur du zoom en  X
+taux=3.
+##raideur du zoom en  Y
+tauy=3.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x95x19
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x95x19	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x95x19	(revision 2180)
@@ -0,0 +1,54 @@
+## $Id$
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=480
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=5400.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=7200.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=7200.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
+purmats=n
+## avec ou sans physique                                                 
+physic=y
+## periode de la physique (en pas)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 10
+##  Avec ou sans strato
+ok_strato=n
+#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
+iflag_top_bound=1
+#  Coefficient pour la couche eponge (valeur derniere couche)
+tau_top_bound=1.e-5
+## longitude en degres du centre du zoom                                 
+clon=0.
+## latitude en degres du centre du zoom                                  
+clat=0.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=1.0
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=1.0
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.0
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.0
+##raideur du zoom en  X
+taux=3.
+##raideur du zoom en  Y
+tauy=3.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x95x39
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x95x39	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/gcm.def_96x95x39	(revision 2180)
@@ -0,0 +1,54 @@
+## $Id$
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=480
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=5400.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=5400.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=5400.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
+purmats=n
+## avec ou sans physique                                                 
+physic=y
+## periode de la physique (en pas)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 10
+##  Avec ou sans strato
+ok_strato=y 
+#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
+iflag_top_bound=2
+#  Coefficient pour la couche eponge (valeur derniere couche)
+tau_top_bound=5.e-5
+## longitude en degres du centre du zoom                                 
+clon=0.
+## latitude en degres du centre du zoom                                  
+clat=0.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=1.0
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=1.0
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.0
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.0
+##raideur du zoom en  X
+taux=3.
+##raideur du zoom en  Y
+tauy=3.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/guide.def
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/guide.def	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/guide.def	(revision 2180)
@@ -0,0 +1,16 @@
+# ok_guide=y : guidage active
+ok_guide=_AUTO_ : DEFFAULT = n
+#
+guide_u= y
+guide_v= y
+guide_T= n
+guide_P= n
+guide_Q= n
+
+ini_anal=n
+tau_min_u=0.0208333
+tau_max_u=0.125
+tau_min_v=0.0208333
+tau_max_v=0.125
+#tau_min_T=0.0208333
+#tau_max_T=10
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/inca.def
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/inca.def	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/inca.def	(revision 2180)
@@ -0,0 +1,9 @@
+#######################################################################
+# parametres pour INCA
+#######################################################################
+#climatological=y --> use 10m wind from LMDZ, =n --> use 10m wind from output file
+climatological=_AUTO_
+#freq_write_chem --> write frequency for inca_inst and inca_avgr (86400 = 1/day)
+freq_write_chem=_AUTO_
+#choose if there is a feedback with the areosol effect
+feedb=_AUTO_
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/orchidee.def_CWRR
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/orchidee.def_CWRR	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/orchidee.def_CWRR	(revision 2180)
@@ -0,0 +1,893 @@
+#
+#**************************************************************************
+#                    Namelist for ORCHIDEE
+#**************************************************************************
+#
+#
+#**************************************************************************
+#          OPTIONS NOT SET
+#**************************************************************************
+#
+#
+#**************************************************************************
+#          Management of display in the run of ORCHIDEE
+#**************************************************************************
+
+# Model chatting level
+# level of online diagnostics in STOMATE (0-4)
+# With this variable, you can determine how much online information STOMATE
+#  gives during the run. 0 means virtually no info.
+BAVARD = 1
+# default = 1
+
+# Flag for debug information
+# This option allows to switch on the output of debug
+#         information without recompiling the code.
+DEBUG_INFO = n
+#default = n
+
+# ORCHIDEE will print more messages
+# This flag permits to print more debug messages in the run.
+LONGPRINT = n
+#default = n
+
+#---------------------------------------------------------------------
+
+# To reset the time coming from SECHIBA restart file
+# This option allows the model to override the time
+#  found in the restart file of SECHIBA with the time
+#  of the first call. That is the restart time of the GCM.
+SECHIBA_reset_time = y
+# default = n
+
+#**************************************************************************
+#          Files : incoming / forcing / restart /output
+#**************************************************************************
+# Ancillary files :
+#---------------------------------------------------------------------
+
+# Name of file from which the vegetation map is to be read
+# If !IMPOSE_VEG
+# If LAND_USE 
+#   default = pft_new.nc
+#   The name of the file to be opened to read a vegetation
+#   map (in pft) is to be given here. 
+# If !LAND_USE
+#   default = ../surfmap/carteveg5km.nc
+#   The name of the file to be opened to read the vegetation
+#   map is to be given here. Usualy SECHIBA runs with a 5kmx5km
+#   map which is derived from the IGBP one. We assume that we have
+#   a classification in 87 types. This is Olson modified by Viovy.
+VEGETATION_FILE = PFTmap.nc
+
+
+# Name of file from which the bare soil albedo
+# If !IMPOSE_AZE
+# The name of the file to be opened to read the soil types from 
+#  which we derive then the bare soil albedos. This file is 1x1 
+#  deg and based on the soil colors defined by Wilson and Henderson-Seller.
+SOILALB_FILE = soils_param.nc
+# default = ../surfmap/soils_param.nc
+
+# Name of file from which soil types are read
+# If !IMPOSE_VEG
+# The name of the file to be opened to read the soil types. 
+#  The data from this file is then interpolated to the grid of
+#  of the model. The aim is to get fractions for sand loam and
+#  clay in each grid box. This information is used for soil hydrology
+#  and respiration.
+#  This parameter change name in newer ORCHIDEE versions; SOILTYPE_FILE=>SOILCLASS_FILE
+SOILTYPE_FILE = soils_param.nc
+SOILCLASS_FILE= soils_param.nc
+# default = ../surfmap/soils_param.nc
+
+# Name of file from which the reference
+# The name of the file to be opened to read
+#  temperature is read
+#  the reference surface temperature.
+#  The data from this file is then interpolated
+#  to the grid of the model.
+#  The aim is to get a reference temperature either
+#  to initialize the corresponding prognostic model
+#  variable correctly (ok_dgvm = TRUE) or to impose it
+#  as boundary condition (ok_dgvm = FALSE)
+REFTEMP_FILE = reftemp.nc
+# default = reftemp.nc
+
+# Name of file containg information about topography.
+TOPOGRAPHY_FILE =cartepente2d_15min.nc
+
+# Input and output restart file for SECHIBA :
+#---------------------------------------------------------------------
+
+# Name of restart to READ for initial conditions
+# This is the name of the file which will be opened
+#  to extract the initial values of all prognostic
+#  values of the model. This has to be a netCDF file.
+#  Not truly COADS compliant. NONE will mean that
+#  no restart file is to be expected.
+SECHIBA_restart_in = _AUTO_
+# default = NONE
+
+# Name of restart files to be created by SECHIBA
+# This variable give the name for the restart files. 
+#  The restart software within IOIPSL will add .nc if needed.
+SECHIBA_rest_out = sechiba_rest_out.nc
+# default = sechiba_rest_out.nc
+
+# Input and output restart file for STOMATE :
+#---------------------------------------------------------------------
+
+# Name of restart to READ for initial conditions of STOMATE
+# If STOMATE_OK_STOMATE || STOMATE_WATCHOUT
+# This is the name of the file which will be opened of STOMATE
+#   to extract the initial values of all prognostic values of STOMATE.
+STOMATE_RESTART_FILEIN = _AUTO_
+# default = NONE
+
+# Name of restart files to be created by STOMATE
+# If STOMATE_OK_STOMATE || STOMATE_WATCHOUT
+# This is the name of the file which will be opened
+#        to write the final values of all prognostic values
+#        of STOMATE.
+STOMATE_RESTART_FILEOUT = stomate_rest_out.nc
+# default = stomate_restart.nc
+
+# Forcing files for TESTSTOMATE and FORCESOIL
+#---------------------------------------------------------------------
+
+# Name of STOMATE's forcing file
+# Name that will be given to STOMATE's offline forcing file
+#STOMATE_FORCING_NAME = stomate_forcing.nc
+#default = NONE
+
+# Size of STOMATE forcing data in memory (MB)
+# This variable determines how many
+#  forcing states will be kept in memory.
+#  Must be a compromise between memory
+#  use and frequeny of disk access.
+STOMATE_FORCING_MEMSIZE = 50
+# default = 50
+
+# Name of STOMATE's carbon forcing file
+# Name that will be given to STOMATE's carbon offline forcing file
+#STOMATE_CFORCING_NAME = stomate_Cforcing.nc
+# default = NONE
+
+
+# Produced forcing file name (SECHIBA puis STOMATE) :
+#---------------------------------------------------------------------
+
+# ORCHIDEE will write out its forcing to a file
+# This flag allows to write to a file all the variables
+#  which are used to force the land-surface. The file 
+#  has exactly the same format than a normal off-line forcing
+#  and thus this forcing can be used for forcing ORCHIDEE.
+#ORCHIDEE_WATCHOUT = y
+# default = n
+
+# Filenane for the ORCHIDEE forcing file
+# If ORCHIDEE_WATCHOUT
+# This is the name of the file in which the
+#  forcing used here will be written for later use. 
+WATCHOUT_FILE = orchidee_watchout.nc
+# default = orchidee_watchout.nc
+
+# ORCHIDEE will write out with this frequency
+# If ORCHIDEE_WATCHOUT
+# This flag indicates the frequency of the write of the variables. 
+DT_WATCHOUT = 1800
+# default = dt
+
+# STOMATE does minimum service
+# set to TRUE if you want STOMATE to read
+#  and write its start files and keep track
+#  of longer-term biometeorological variables.
+#  This is useful if OK_STOMATE is not set,
+#  but if you intend to activate STOMATE later.
+#  In that case, this run can serve as a 
+#  spinup for longer-term biometeorological
+#  variables.
+#STOMATE_WATCHOUT = y
+# default = n
+
+# Output file name (SECHIBA and STOMATE) :
+#---------------------------------------------------------------------
+# Name of file in which the output is going
+# This file is going to be created by the model
+#  to be written
+#  and will contain the output from the model.
+#  This file is a truly COADS compliant netCDF file.
+#  It will be generated by the hist software from
+#  the IOIPSL package.
+OUTPUT_FILE = sechiba_history.nc
+# default = cabauw_out.nc
+
+# Flag to switch on histfile 2 for SECHIBA (hi-frequency ?)
+# This Flag switch on the second SECHIBA writing for hi (or low) 
+#  frequency writing. This second output is optional and not written
+#  by default.
+SECHIBA_HISTFILE2 = _AUTO_
+# default  = FALSE
+
+# Name of file in which the output number 2 is going
+#   to be written
+# If SECHIBA_HISTFILE2
+# This file is going to be created by the model
+#   and will contain the output 2 from the model.
+SECHIBA_OUTPUT_FILE2 = sechiba_out_2.nc
+# default  = sechiba_out_2.nc
+
+# Name of file in which STOMATE's output is going to be written
+# This file is going to be created by the model
+#  and will contain the output from the model.
+#  This file is a truly COADS compliant netCDF file.
+#  It will be generated by the hist software from
+#  the IOIPSL package.
+STOMATE_OUTPUT_FILE = stomate_history.nc
+# default = stomate_history.nc
+
+# Write levels for outputs files (number of variables) :
+#---------------------------------------------------------------------
+
+# SECHIBA history output level (0..10)
+# Chooses the list of variables in the history file. 
+#  Values between 0: nothing is written; 10: everything is 
+#  written are available More details can be found on the web under documentation.
+#  web under documentation.
+SECHIBA_HISTLEVEL = _AUTO_
+# default = 5
+
+# SECHIBA history 2 output level (0..10)
+# If SECHIBA_HISTFILE2
+# Chooses the list of variables in the history file. 
+#   Values between 0: nothing is written; 10: everything is 
+#   written are available More details can be found on the web under documentation.
+#   web under documentation.
+# First level contains all ORCHIDEE outputs.
+SECHIBA_HISTLEVEL2 = _AUTO_
+# default = 1
+
+# STOMATE history output level (0..10)
+#  0: nothing is written; 10: everything is written
+STOMATE_HISTLEVEL = _AUTO_
+# default = 10
+
+#--------------------------------------------------------------------
+# STOMATE_IPCC_OUTPUT_FILE
+# This file is going to be created by the model
+#    and will contain the output from the model.
+#    This file is a truly COADS compliant netCDF file.
+#    It will be generated by the hist software from
+#    the IOIPSL package.
+# Name of file in which STOMATE's output is going
+# to be written
+STOMATE_IPCC_OUTPUT_FILE = stomate_ipcc_history.nc
+# default = stomate_ipcc_history.nc
+
+# STOMATE_IPCC_HIST_DT
+# Time step of the STOMATE IPCC history file
+# STOMATE IPCC history time step (d)
+STOMATE_IPCC_HIST_DT = -1
+# default = 0.
+
+# Write frequency for output files (SECHIBA in seconds et
+# STOMATE in days) :
+#---------------------------------------------------------------------
+# Frequency in seconds at which to WRITE output
+# This variables gives the frequency the output of
+#  the model should be written into the netCDF file.
+#  It does not affect the frequency at which the
+#  operations such as averaging are done.
+WRITE_STEP = _AUTO_
+# default = 86400.0
+
+# Frequency in seconds at which to WRITE output
+# If SECHIBA_HISTFILE2
+# This variables gives the frequency the output 2 of
+#   the model should be written into the netCDF file.
+#   It does not affect the frequency at which the
+#   operations such as averaging are done.
+#   That is IF the coding of the calls to histdef
+#   are correct !
+WRITE_STEP2 = _AUTO_
+# default = 1800.0
+
+# STOMATE history time step (d)
+# Time step of the STOMATE history file
+# Care : this variable must be higher than DT_SLOW
+STOMATE_HIST_DT = _AUTO_
+# default = 10.
+
+#---------------------------------------------------------------------
+# FORCESOIL CARBON spin up parametrization
+#---------------------------------------------------------------------
+
+# Number of time steps per year for carbon spinup.
+FORCESOIL_STEP_PER_YEAR = 12
+# default = 12
+
+# Number of years saved for carbon spinup.
+FORCESOIL_NB_YEAR = 1
+# default = 1
+
+#---------------------------------------------------------------------
+# Parametrization :
+#---------------------------------------------------------------------
+
+# Activate STOMATE?
+# set to TRUE if STOMATE is to be activated
+# STOMATE_OK_STOMATE=_AUTO_ : will be set to y if stomate component SBG is activated in config.card
+STOMATE_OK_STOMATE = n
+# default = n
+
+# Activate DGVM?
+# set to TRUE if Dynamic Vegetation DGVM is to be activated
+STOMATE_OK_DGVM = n
+# default = n
+
+# Activate CO2?
+# set to TRUE if photosynthesis is to be activated
+STOMATE_OK_CO2 = y
+# default = n
+
+# Flag to force the value of atmospheric CO2 for vegetation.
+# If this flag is set to true, the ATM_CO2 parameter is used
+#  to prescribe the atmospheric CO2.
+# This Flag is only use in couple mode.
+FORCE_CO2_VEG = FALSE
+# default = FALSE
+
+# Value for atm CO2.
+# If FORCE_CO2_VEG (in not forced mode)
+# Value to prescribe the atm CO2.
+#  For pre-industrial simulations, the value is 286.2 .
+#  348. for 1990 year.
+ATM_CO2 = 350.
+# default = 350.
+
+# constant tree mortality
+# If yes, then a constant mortality is applied to trees. 
+#  Otherwise, mortality is a function of the trees' 
+#  vigour (as in LPJ).
+LPJ_GAP_CONST_MORT = y
+# default = y
+
+# no fire allowed
+# With this variable, you can allow or not
+#  the estimation of CO2 lost by fire
+FIRE_DISABLE = n
+# default = n
+
+# Average method for z0
+# If this flag is set to true (y) then the neutral Cdrag
+#  is averaged instead of the log(z0). This should be
+#  the prefered option. We still wish to keep the other
+#  option so we can come back if needed. If this is
+#  desired then one should set Z0CDRAG_AVE = n
+Z0CDRAG_AVE = y
+# default = y
+
+# parameters describing the surface (vegetation + soil) :
+#---------------------------------------------------------------------
+#
+# Should the vegetation be prescribed
+# This flag allows the user to impose a vegetation distribution
+#  and its characterisitcs. It is espacially interesting for 0D
+#  simulations. On the globe it does not make too much sense as
+#  it imposes the same vegetation everywhere
+IMPOSE_VEG = n
+# default = n
+
+# Flag to use old "interpolation" of vegetation map.
+# IF NOT IMPOSE_VEG and NOT LAND_USE
+#  If you want to recover the old (ie orchidee_1_2 branch) 
+#   "interpolation" of vegetation map.
+SLOWPROC_VEGET_OLD_INTERPOL = n
+# default = n
+
+# Vegetation distribution within the mesh (0-dim mode)
+# If IMPOSE_VEG
+# The fraction of vegetation is read from the restart file. If
+#  it is not found there we will use the values provided here.
+SECHIBA_VEG__01 = 0.2
+SECHIBA_VEG__02 = 0.0
+SECHIBA_VEG__03 = 0.0
+SECHIBA_VEG__04 = 0.0
+SECHIBA_VEG__05 = 0.0
+SECHIBA_VEG__06 = 0.0
+SECHIBA_VEG__07 = 0.0
+SECHIBA_VEG__08 = 0.0
+SECHIBA_VEG__09 = 0.0
+SECHIBA_VEG__10 = 0.8
+SECHIBA_VEG__11 = 0.0
+SECHIBA_VEG__12 = 0.0
+SECHIBA_VEG__13 = 0.0
+# default = 0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0
+
+# Maximum vegetation distribution within the mesh (0-dim mode)
+# If IMPOSE_VEG
+# The fraction of vegetation is read from the restart file. If
+#  it is not found there we will use the values provided here.
+SECHIBA_VEGMAX__01 = 0.2
+SECHIBA_VEGMAX__02 = 0.0
+SECHIBA_VEGMAX__03 = 0.0
+SECHIBA_VEGMAX__04 = 0.0
+SECHIBA_VEGMAX__05 = 0.0
+SECHIBA_VEGMAX__06 = 0.0
+SECHIBA_VEGMAX__07 = 0.0
+SECHIBA_VEGMAX__08 = 0.0
+SECHIBA_VEGMAX__09 = 0.0
+SECHIBA_VEGMAX__10 = 0.8
+SECHIBA_VEGMAX__11 = 0.0
+SECHIBA_VEGMAX__12 = 0.0
+SECHIBA_VEGMAX__13 = 0.0
+# default = 0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0
+
+# LAI for all vegetation types (0-dim mode)
+# If IMPOSE_VEG
+# The maximum LAI used in the 0dim mode. The values should be found
+#  in the restart file. The new values of LAI will be computed anyway
+#  at the end of the current day. The need for this variable is caused
+#  by the fact that the model may stop during a day and thus we have not
+#  yet been through the routines which compute the new surface conditions.
+SECHIBA_LAI__01 = 0.
+SECHIBA_LAI__02 = 8.
+SECHIBA_LAI__03 = 8.
+SECHIBA_LAI__04 = 4.
+SECHIBA_LAI__05 = 4.5
+SECHIBA_LAI__06 = 4.5
+SECHIBA_LAI__07 = 4.
+SECHIBA_LAI__08 = 4.5
+SECHIBA_LAI__09 = 4.
+SECHIBA_LAI__10 = 2.
+SECHIBA_LAI__11 = 2.
+SECHIBA_LAI__12 = 2.
+SECHIBA_LAI__13 = 2.
+# default = 0., 8., 8., 4., 4.5, 4.5, 4., 4.5, 4., 2., 2., 2., 2.
+
+# Height for all vegetation types (m)
+# If IMPOSE_VEG
+# The height used in the 0dim mode. The values should be found
+#  in the restart file. The new values of height will be computed anyway
+#  at the end of the current day. The need for this variable is caused
+#  by the fact that the model may stop during a day and thus we have not
+#  yet been through the routines which compute the new surface conditions.
+SLOWPROC_HEIGHT__01 = 0.
+SLOWPROC_HEIGHT__02 = 50.
+SLOWPROC_HEIGHT__03 = 50.
+SLOWPROC_HEIGHT__04 = 30.
+SLOWPROC_HEIGHT__05 = 30.
+SLOWPROC_HEIGHT__06 = 30.
+SLOWPROC_HEIGHT__07 = 20.
+SLOWPROC_HEIGHT__08 = 20.
+SLOWPROC_HEIGHT__09 = 20.
+SLOWPROC_HEIGHT__10 = .2
+SLOWPROC_HEIGHT__11 = .2
+SLOWPROC_HEIGHT__12 = .4
+SLOWPROC_HEIGHT__13 = .4
+# default = 0., 30., 30., 20., 20., 20., 15., 15., 15., .5, .6, 1.0, 1.0
+
+
+# Fraction of the 3 soil types (0-dim mode)
+# If IMPOSE_VEG
+# Determines the fraction for the 3 soil types
+#  in the mesh in the following order : sand loam and clay.
+SOIL_FRACTIONS__01 = 0.28
+SOIL_FRACTIONS__02 = 0.52
+SOIL_FRACTIONS__03 = 0.20
+# default = 0.28, 0.52, 0.20
+
+# Fraction of other surface types within the mesh (0-dim mode)
+# If IMPOSE_VEG
+# The fraction of ice, lakes, etc. is read from the restart file. If
+#  it is not found there we will use the values provided here.
+#  For the moment, there is only ice.
+SECHIBA_FRAC_NOBIO = 0.0
+# default = 0.0
+
+# Fraction of the clay fraction (0-dim mode)
+# If IMPOSE_VEG
+# Determines the fraction of clay in the grid box.
+CLAY_FRACTION = 0.2
+# default = 0.2
+
+# Should the surface parameters be prescribed
+# This flag allows the user to impose the surface parameters
+#  (Albedo Roughness and Emissivity). It is espacially interesting for 0D
+#  simulations. On the globe it does not make too much sense as
+#  it imposes the same vegetation everywhere
+IMPOSE_AZE = n
+# default = n
+
+# Emissivity of the surface for LW radiation
+# If IMPOSE_AZE
+# The surface emissivity used for compution the LE emission
+#  of the surface in a 0-dim version. Values range between 
+#  0.97 and 1.. The GCM uses 0.98.
+CONDVEG_EMIS = 1.0
+# default = 1.0
+
+# SW visible albedo for the surface
+# If IMPOSE_AZE
+# Surface albedo in visible wavelengths to be used 
+#  on the point if a 0-dim version of SECHIBA is used. 
+#  Look at the description of the forcing data for 
+#  the correct value.
+CONDVEG_ALBVIS = 0.25
+# default = 0.25
+
+# SW near infrared albedo for the surface
+# If IMPOSE_AZE
+# Surface albedo in near infrared wavelengths to be used 
+#  on the point if a 0-dim version of SECHIBA is used. 
+#  Look at the description of the forcing data for 
+#  the correct value.
+CONDVEG_ALBNIR = 0.25
+# default = 0.25
+
+# Surface roughness (m)
+# If IMPOSE_AZE
+# Surface rougness to be used on the point if a 0-dim version
+#  of SECHIBA is used. Look at the description of the forcing  
+#  data for the correct value.
+CONDVEG_Z0 = 0.15
+# default = 0.15_stnd
+
+# Height to be added to the height of the first level (m)
+# If IMPOSE_AZE
+# ORCHIDEE assumes that the atmospheric level height is counted
+#  from the zero wind level. Thus to take into account the roughness
+#  of tall vegetation we need to correct this by a certain fraction
+#  of the vegetation height. This is called the roughness height in
+#  ORCHIDEE talk.
+ROUGHHEIGHT = 0.0
+# default = 0.0
+
+# The snow albedo used by SECHIBA
+# This option allows the user to impose a snow albedo.
+#  Default behaviour is to use the model of snow albedo
+#  developed by Chalita (1993).
+CONDVEG_SNOWA = default
+# default = use the model of snow albedo developed by Chalita
+
+# Switch bare soil albedo dependent (if TRUE) on soil wetness
+# If TRUE, the model for bare soil albedo is the old formulation.
+#  Then it depend on the soil dry or wetness. If FALSE, it is the 
+#  new computation that is taken, it is only function of soil color.
+ALB_BARE_MODEL = FALSE
+# default = FALSE
+
+# Initial snow mass if not found in restart
+# The initial value of snow mass if its value is not found
+#   in the restart file. This should only be used if the model is 
+#   started without a restart file.
+HYDROL_SNOW = 0.0
+# default = 0.0
+
+
+# Initial snow age if not found in restart
+# The initial value of snow age if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_SNOWAGE = 0.0
+# default = 0.0
+
+# Initial snow amount on ice, lakes, etc. if not found in restart
+# The initial value of snow if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_SNOW_NOBIO = 0.0
+# default = 0.0
+
+# Initial snow age on ice, lakes, etc. if not found in restart
+# The initial value of snow age if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_SNOW_NOBIO_AGE = 0.0
+# default = 0.0
+
+# Initial soil moisture stress if not found in restart
+# The initial value of soil moisture stress if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_HUMR = 1.0
+# default = 1.0
+
+# Total depth of soil reservoir
+HYDROL_SOIL_DEPTH = 2.
+# default = 2.
+
+# Root profile
+# Default values were defined for 2 meters soil depth.
+# For 4 meters soil depth, you may use those ones :
+# 5., .4, .4, 1., .8, .8, 1., 1., .8, 4., 1., 4., 1.
+HYDROL_HUMCSTE= 5.0, 0.8, 0.8, 1.0, 0.8, 0.8, 1.0, 1.0, 0.8, 4.0, 4.0, 4.0, 4.0 
+# default =  5., .8, .8, 1., .8, .8, 1., 1., .8, 4., 4., 4., 4.
+
+# Initial restart deep soil moisture if not found in restart
+# The initial value of deep soil moisture if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file. Default behaviour is a saturated soil.
+HYDROL_BQSB = default
+# default = Maximum quantity of water (Kg/M3) * Total depth of soil reservoir = 150. * 2
+
+# Initial upper soil moisture if not found in restart
+# The initial value of upper soil moisture if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_GQSB = 0.0
+# default = 0.0
+
+# Initial upper reservoir depth if not found in restart
+# The initial value of upper reservoir depth if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_DSG = 0.0
+# default = 0.0
+
+# Initial dry soil above upper reservoir if not found in restart
+# The initial value of dry soil above upper reservoir if its value 
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file. The default behaviour
+#  is to compute it from the variables above. Should be OK most of 
+#  the time.
+HYDROL_DSP = default
+# default = Total depth of soil reservoir - HYDROL_BQSB / Maximum quantity of water (Kg/M3) = 0.0
+
+# Initial water on canopy if not found in restart
+# The initial value of moisture on canopy if its value 
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_QSV = 0.0
+# default = 0.0
+
+# Soil moisture on each soil tile and levels
+# The initial value of mc if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_MOISTURE_CONTENT = 0.3
+# default = 0.3
+
+# US_NVM_NSTM_NSLM
+# The initial value of us (relative moisture) if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+US_INIT = 0.0
+# default = 0.0
+
+# Coefficient for free drainage at bottom
+# The initial value of free drainage if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+FREE_DRAIN_COEF = 1.0, 1.0, 1.0
+# default = 1.0, 1.0, 1.0
+
+# Bare soil evap on each soil if not found in restart
+# The initial value of bare soils evap if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+EVAPNU_SOIL = 0.0
+# default = 0.0
+
+# Initial temperature if not found in restart
+# The initial value of surface temperature if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+ENERBIL_TSURF = 280.
+# default = 280.
+
+# Initial Soil Potential Evaporation
+# The initial value of soil potential evaporation if its value 
+#  is not found in the restart file. This should only be used if
+#  the model is started without a restart file. 
+ENERBIL_EVAPOT = 0.0
+# default = 0.0
+
+# Initial soil temperature profile if not found in restart
+# The initial value of the temperature profile in the soil if 
+#   its value is not found in the restart file. This should only 
+#   be used if the model is started without a restart file. Here
+#   we only require one value as we will assume a constant 
+#   throughout the column.
+THERMOSOIL_TPRO = 280.
+# default = 280.
+
+# Initial leaf CO2 level if not found in restart
+# The initial value of leaf_ci if its value is not found
+#  in the restart file. This should only be used if the model is
+#  started without a restart file.
+DIFFUCO_LEAFCI = 233.
+# default = 233.
+
+
+# Keep cdrag coefficient from gcm.
+# Set to .TRUE. if you want q_cdrag coming from GCM.
+#  Keep cdrag coefficient from gcm for latent and sensible heat fluxes.
+#  TRUE if q_cdrag on initialization is non zero (FALSE for off-line runs).
+CDRAG_FROM_GCM = y
+# default =  IF q_cdrag == 0 ldq_cdrag_from_gcm = .FALSE. ELSE .TRUE.
+
+
+# Artificial parameter to increase or decrease canopy resistance
+# Add from Nathalie - the 28 of March 2006 - advice from Fred Hourdin
+# By PFT.
+RVEG_PFT = 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.
+# default = 1.
+
+
+# Interception reservoir coefficient.
+# Transforms leaf area index into size of interception reservoir
+#  for slowproc_derivvar or stomate.
+SECHIBA_QSINT = 0.02
+# default = 0.1
+
+#**************************************************************************
+# LAND_USE
+#**************************************************************************
+
+# Read a land_use vegetation map
+# pft values are needed, max time axis is 293
+LAND_USE = y
+# default = n
+
+# Year of the land_use vegetation map readed
+# year off the pft map
+# If LAND_USE (11 = 1860 - 1850 +1 for PFTmap.20C3M.nc, 1 for PFTmap_IPCC_2000.nc) 
+VEGET_YEAR = 1
+# default = 282
+
+# booleen to indicate that a new LAND USE file will be used (since 1.9.5 version).
+# The parameter is used to bypass veget_year count 
+# and reinitialize it with VEGET_YEAR parameter.
+# Then it is possible to change LAND USE file.
+# If LAND_USE
+VEGET_REINIT = n
+# default = n
+
+# Update vegetation frequency (since 2.0 version)
+# The veget datas will be update each this time step.
+# If LAND_USE
+VEGET_UPDATE = _AUTO_
+# default = 1Y
+
+# treat land use modifications
+# With this variable, you can use a Land Use map
+# to simulate anthropic modifications such as   
+# deforestation.                                
+# If LAND_USE
+LAND_COVER_CHANGE = _AUTO_
+# default = y
+
+#**************************************************************************
+
+# agriculture allowed?
+# With this variable, you can determine
+#  whether agriculture is allowed
+AGRICULTURE = y
+# default = y
+
+# Harvert model for agricol PFTs.
+# Compute harvest above ground biomass for agriculture.
+# Change daily turnover.
+HARVEST_AGRI = y
+# default = y
+
+# herbivores allowed?
+# With this variable, you can activate herbivores 
+HERBIVORES = n
+# default = n
+
+# treat expansion of PFTs across a grid cell?
+# With this variable, you can determine
+#  whether we treat expansion of PFTs across a
+#  grid cell.
+TREAT_EXPANSION = n
+# default = n
+
+#**************************************************************************
+
+# Time within the day simulated
+# This is the time spent simulating the current day. This variable is
+#  prognostic as it will trigger all the computations which are
+#  only done once a day.
+SECHIBA_DAY = 0.0
+# default = 0.0
+
+# Time step of STOMATE and other slow processes
+# Time step (s) of regular update of vegetation
+#  cover, LAI etc. This is also the time step
+#  of STOMATE.
+DT_SLOW = 86400.
+# default = un_jour = 86400.
+
+#**************************************************************************
+
+# Allows to switch on the multilayer hydrology of CWRR
+# This flag allows the user to decide if the vertical
+#  hydrology should be treated using the multi-layer 
+#  diffusion scheme adapted from CWRR by Patricia de Rosnay.
+#  by default the Choisnel hydrology is used.
+HYDROL_CWRR = y 
+# default = n
+
+# do horizontal diffusion?
+# If TRUE, then water can diffuse horizontally between
+#  the PFTs' water reservoirs.
+HYDROL_OK_HDIFF = n
+# default = n
+ 
+
+# time scale (s) for horizontal diffusion of water
+# If HYDROL_OK_HDIFF
+# Defines how fast diffusion occurs horizontally between
+#  the individual PFTs' water reservoirs. If infinite, no
+#  diffusion.
+HYDROL_TAU_HDIFF = 1800.
+# default = 86400.
+
+# Percent by PFT of precip that is not intercepted by the canopy (since TAG 1.8).
+# During one rainfall event, PERCENT_THROUGHFALL_PFT% of the incident rainfall
+#  will get directly to the ground without being intercepted, for each PFT..
+PERCENT_THROUGHFALL_PFT = 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30.
+# default = 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30.
+
+# Decides if we route the water or not
+# This flag allows the user to decide if the runoff
+#  and drainage should be routed to the ocean
+#  and to downstream grid boxes.
+RIVER_ROUTING = y
+# default = n
+
+# Name of file which contains the routing information
+# The file provided here should allow the routing module to
+#  read the high resolution grid of basins and the flow direction 
+#  from one mesh to the other.
+ROUTING_FILE = routing.nc
+# default = routing.nc
+
+# Time step of the routing scheme
+# If RIVER_ROUTING
+# This values gives the time step in seconds of the routing scheme. 
+#   It should be multiple of the main time step of ORCHIDEE. One day
+#   is a good value.
+ROUTING_TIMESTEP = 86400
+# default = 86400
+
+# Number of rivers 
+# If RIVER_ROUTING
+# This parameter chooses the number of largest river basins
+#  which should be treated as independently as rivers and not
+#  flow into the oceans as diffusion coastal flow.
+ROUTING_RIVERS = 50
+# default = 50
+
+# Should we compute an irrigation flux 
+# This parameters allows the user to ask the model
+#  to compute an irigation flux. This performed for the
+#  on very simple hypothesis. The idea is to have a good
+#  map of irrigated areas and a simple function which estimates
+#  the need to irrigate.
+DO_IRRIGATION = n
+# default = n
+
+# Name of file which contains the map of irrigated areas
+# If IRRIGATE
+# The name of the file to be opened to read the field
+#  with the area in m^2 of the area irrigated within each
+#  0.5 0.5 deg grid box. The map currently used is the one
+#  developed by the Center for Environmental Systems Research 
+#  in Kassel (1995).
+IRRIGATION_FILE = irrigated.nc
+# default = irrigated.nc
+
+# Should we include floodplains 
+# This parameters allows the user to ask the model
+#  to take into account the flood plains and return 
+#  the water into the soil moisture. It then can go 
+#  back to the atmopshere. This tried to simulate 
+#  internal deltas of rivers.
+DO_FLOODPLAINS = n
+# default = n
+
+#**************************************************************************
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/orchidee.def_Choi
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/orchidee.def_Choi	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/orchidee.def_Choi	(revision 2180)
@@ -0,0 +1,893 @@
+#
+#**************************************************************************
+#                    Namelist for ORCHIDEE
+#**************************************************************************
+#
+#
+#**************************************************************************
+#          OPTIONS NOT SET
+#**************************************************************************
+#
+#
+#**************************************************************************
+#          Management of display in the run of ORCHIDEE
+#**************************************************************************
+
+# Model chatting level
+# level of online diagnostics in STOMATE (0-4)
+# With this variable, you can determine how much online information STOMATE
+#  gives during the run. 0 means virtually no info.
+BAVARD = 1
+# default = 1
+
+# Flag for debug information
+# This option allows to switch on the output of debug
+#         information without recompiling the code.
+DEBUG_INFO = n
+#default = n
+
+# ORCHIDEE will print more messages
+# This flag permits to print more debug messages in the run.
+LONGPRINT = n
+#default = n
+
+#---------------------------------------------------------------------
+
+# To reset the time coming from SECHIBA restart file
+# This option allows the model to override the time
+#  found in the restart file of SECHIBA with the time
+#  of the first call. That is the restart time of the GCM.
+SECHIBA_reset_time = y
+# default = n
+
+#**************************************************************************
+#          Files : incoming / forcing / restart /output
+#**************************************************************************
+# Ancillary files :
+#---------------------------------------------------------------------
+
+# Name of file from which the vegetation map is to be read
+# If !IMPOSE_VEG
+# If LAND_USE 
+#   default = pft_new.nc
+#   The name of the file to be opened to read a vegetation
+#   map (in pft) is to be given here. 
+# If !LAND_USE
+#   default = ../surfmap/carteveg5km.nc
+#   The name of the file to be opened to read the vegetation
+#   map is to be given here. Usualy SECHIBA runs with a 5kmx5km
+#   map which is derived from the IGBP one. We assume that we have
+#   a classification in 87 types. This is Olson modified by Viovy.
+VEGETATION_FILE = PFTmap.nc
+
+
+# Name of file from which the bare soil albedo
+# If !IMPOSE_AZE
+# The name of the file to be opened to read the soil types from 
+#  which we derive then the bare soil albedos. This file is 1x1 
+#  deg and based on the soil colors defined by Wilson and Henderson-Seller.
+SOILALB_FILE = soils_param.nc
+# default = ../surfmap/soils_param.nc
+
+# Name of file from which soil types are read
+# If !IMPOSE_VEG
+# The name of the file to be opened to read the soil types. 
+#  The data from this file is then interpolated to the grid of
+#  of the model. The aim is to get fractions for sand loam and
+#  clay in each grid box. This information is used for soil hydrology
+#  and respiration.
+#  This parameter change name in newer ORCHIDEE versions; SOILTYPE_FILE=>SOILCLASS_FILE
+SOILTYPE_FILE = soils_param.nc
+SOILCLASS_FILE= soils_param.nc
+# default = ../surfmap/soils_param.nc
+
+# Name of file from which the reference
+# The name of the file to be opened to read
+#  temperature is read
+#  the reference surface temperature.
+#  The data from this file is then interpolated
+#  to the grid of the model.
+#  The aim is to get a reference temperature either
+#  to initialize the corresponding prognostic model
+#  variable correctly (ok_dgvm = TRUE) or to impose it
+#  as boundary condition (ok_dgvm = FALSE)
+REFTEMP_FILE = reftemp.nc
+# default = reftemp.nc
+
+# Name of file containg information about topography.
+TOPOGRAPHY_FILE =cartepente2d_15min.nc
+
+# Input and output restart file for SECHIBA :
+#---------------------------------------------------------------------
+
+# Name of restart to READ for initial conditions
+# This is the name of the file which will be opened
+#  to extract the initial values of all prognostic
+#  values of the model. This has to be a netCDF file.
+#  Not truly COADS compliant. NONE will mean that
+#  no restart file is to be expected.
+SECHIBA_restart_in = _AUTO_
+# default = NONE
+
+# Name of restart files to be created by SECHIBA
+# This variable give the name for the restart files. 
+#  The restart software within IOIPSL will add .nc if needed.
+SECHIBA_rest_out = sechiba_rest_out.nc
+# default = sechiba_rest_out.nc
+
+# Input and output restart file for STOMATE :
+#---------------------------------------------------------------------
+
+# Name of restart to READ for initial conditions of STOMATE
+# If STOMATE_OK_STOMATE || STOMATE_WATCHOUT
+# This is the name of the file which will be opened of STOMATE
+#   to extract the initial values of all prognostic values of STOMATE.
+STOMATE_RESTART_FILEIN = _AUTO_
+# default = NONE
+
+# Name of restart files to be created by STOMATE
+# If STOMATE_OK_STOMATE || STOMATE_WATCHOUT
+# This is the name of the file which will be opened
+#        to write the final values of all prognostic values
+#        of STOMATE.
+STOMATE_RESTART_FILEOUT = stomate_rest_out.nc
+# default = stomate_restart.nc
+
+# Forcing files for TESTSTOMATE and FORCESOIL
+#---------------------------------------------------------------------
+
+# Name of STOMATE's forcing file
+# Name that will be given to STOMATE's offline forcing file
+#STOMATE_FORCING_NAME = stomate_forcing.nc
+#default = NONE
+
+# Size of STOMATE forcing data in memory (MB)
+# This variable determines how many
+#  forcing states will be kept in memory.
+#  Must be a compromise between memory
+#  use and frequeny of disk access.
+STOMATE_FORCING_MEMSIZE = 50
+# default = 50
+
+# Name of STOMATE's carbon forcing file
+# Name that will be given to STOMATE's carbon offline forcing file
+#STOMATE_CFORCING_NAME = stomate_Cforcing.nc
+# default = NONE
+
+
+# Produced forcing file name (SECHIBA puis STOMATE) :
+#---------------------------------------------------------------------
+
+# ORCHIDEE will write out its forcing to a file
+# This flag allows to write to a file all the variables
+#  which are used to force the land-surface. The file 
+#  has exactly the same format than a normal off-line forcing
+#  and thus this forcing can be used for forcing ORCHIDEE.
+#ORCHIDEE_WATCHOUT = y
+# default = n
+
+# Filenane for the ORCHIDEE forcing file
+# If ORCHIDEE_WATCHOUT
+# This is the name of the file in which the
+#  forcing used here will be written for later use. 
+WATCHOUT_FILE = orchidee_watchout.nc
+# default = orchidee_watchout.nc
+
+# ORCHIDEE will write out with this frequency
+# If ORCHIDEE_WATCHOUT
+# This flag indicates the frequency of the write of the variables. 
+DT_WATCHOUT = 1800
+# default = dt
+
+# STOMATE does minimum service
+# set to TRUE if you want STOMATE to read
+#  and write its start files and keep track
+#  of longer-term biometeorological variables.
+#  This is useful if OK_STOMATE is not set,
+#  but if you intend to activate STOMATE later.
+#  In that case, this run can serve as a 
+#  spinup for longer-term biometeorological
+#  variables.
+#STOMATE_WATCHOUT = y
+# default = n
+
+# Output file name (SECHIBA and STOMATE) :
+#---------------------------------------------------------------------
+# Name of file in which the output is going
+# This file is going to be created by the model
+#  to be written
+#  and will contain the output from the model.
+#  This file is a truly COADS compliant netCDF file.
+#  It will be generated by the hist software from
+#  the IOIPSL package.
+OUTPUT_FILE = sechiba_history.nc
+# default = cabauw_out.nc
+
+# Flag to switch on histfile 2 for SECHIBA (hi-frequency ?)
+# This Flag switch on the second SECHIBA writing for hi (or low) 
+#  frequency writing. This second output is optional and not written
+#  by default.
+SECHIBA_HISTFILE2 = _AUTO_
+# default  = FALSE
+
+# Name of file in which the output number 2 is going
+#   to be written
+# If SECHIBA_HISTFILE2
+# This file is going to be created by the model
+#   and will contain the output 2 from the model.
+SECHIBA_OUTPUT_FILE2 = sechiba_out_2.nc
+# default  = sechiba_out_2.nc
+
+# Name of file in which STOMATE's output is going to be written
+# This file is going to be created by the model
+#  and will contain the output from the model.
+#  This file is a truly COADS compliant netCDF file.
+#  It will be generated by the hist software from
+#  the IOIPSL package.
+STOMATE_OUTPUT_FILE = stomate_history.nc
+# default = stomate_history.nc
+
+# Write levels for outputs files (number of variables) :
+#---------------------------------------------------------------------
+
+# SECHIBA history output level (0..10)
+# Chooses the list of variables in the history file. 
+#  Values between 0: nothing is written; 10: everything is 
+#  written are available More details can be found on the web under documentation.
+#  web under documentation.
+SECHIBA_HISTLEVEL = _AUTO_
+# default = 5
+
+# SECHIBA history 2 output level (0..10)
+# If SECHIBA_HISTFILE2
+# Chooses the list of variables in the history file. 
+#   Values between 0: nothing is written; 10: everything is 
+#   written are available More details can be found on the web under documentation.
+#   web under documentation.
+# First level contains all ORCHIDEE outputs.
+SECHIBA_HISTLEVEL2 = _AUTO_
+# default = 1
+
+# STOMATE history output level (0..10)
+#  0: nothing is written; 10: everything is written
+STOMATE_HISTLEVEL = _AUTO_
+# default = 10
+
+#--------------------------------------------------------------------
+# STOMATE_IPCC_OUTPUT_FILE
+# This file is going to be created by the model
+#    and will contain the output from the model.
+#    This file is a truly COADS compliant netCDF file.
+#    It will be generated by the hist software from
+#    the IOIPSL package.
+# Name of file in which STOMATE's output is going
+# to be written
+STOMATE_IPCC_OUTPUT_FILE = stomate_ipcc_history.nc
+# default = stomate_ipcc_history.nc
+
+# STOMATE_IPCC_HIST_DT
+# Time step of the STOMATE IPCC history file
+# STOMATE IPCC history time step (d)
+STOMATE_IPCC_HIST_DT = -1
+# default = 0.
+
+# Write frequency for output files (SECHIBA in seconds et
+# STOMATE in days) :
+#---------------------------------------------------------------------
+# Frequency in seconds at which to WRITE output
+# This variables gives the frequency the output of
+#  the model should be written into the netCDF file.
+#  It does not affect the frequency at which the
+#  operations such as averaging are done.
+WRITE_STEP = _AUTO_
+# default = 86400.0
+
+# Frequency in seconds at which to WRITE output
+# If SECHIBA_HISTFILE2
+# This variables gives the frequency the output 2 of
+#   the model should be written into the netCDF file.
+#   It does not affect the frequency at which the
+#   operations such as averaging are done.
+#   That is IF the coding of the calls to histdef
+#   are correct !
+WRITE_STEP2 = _AUTO_
+# default = 1800.0
+
+# STOMATE history time step (d)
+# Time step of the STOMATE history file
+# Care : this variable must be higher than DT_SLOW
+STOMATE_HIST_DT = _AUTO_
+# default = 10.
+
+#---------------------------------------------------------------------
+# FORCESOIL CARBON spin up parametrization
+#---------------------------------------------------------------------
+
+# Number of time steps per year for carbon spinup.
+FORCESOIL_STEP_PER_YEAR = 12
+# default = 12
+
+# Number of years saved for carbon spinup.
+FORCESOIL_NB_YEAR = 1
+# default = 1
+
+#---------------------------------------------------------------------
+# Parametrization :
+#---------------------------------------------------------------------
+
+# Activate STOMATE?
+# set to TRUE if STOMATE is to be activated
+# STOMATE_OK_STOMATE=_AUTO_ : will be set to y if stomate component SBG is activated in config.card
+STOMATE_OK_STOMATE = n
+# default = n
+
+# Activate DGVM?
+# set to TRUE if Dynamic Vegetation DGVM is to be activated
+STOMATE_OK_DGVM = n
+# default = n
+
+# Activate CO2?
+# set to TRUE if photosynthesis is to be activated
+STOMATE_OK_CO2 = y
+# default = n
+
+# Flag to force the value of atmospheric CO2 for vegetation.
+# If this flag is set to true, the ATM_CO2 parameter is used
+#  to prescribe the atmospheric CO2.
+# This Flag is only use in couple mode.
+FORCE_CO2_VEG = FALSE
+# default = FALSE
+
+# Value for atm CO2.
+# If FORCE_CO2_VEG (in not forced mode)
+# Value to prescribe the atm CO2.
+#  For pre-industrial simulations, the value is 286.2 .
+#  348. for 1990 year.
+ATM_CO2 = 350.
+# default = 350.
+
+# constant tree mortality
+# If yes, then a constant mortality is applied to trees. 
+#  Otherwise, mortality is a function of the trees' 
+#  vigour (as in LPJ).
+LPJ_GAP_CONST_MORT = y
+# default = y
+
+# no fire allowed
+# With this variable, you can allow or not
+#  the estimation of CO2 lost by fire
+FIRE_DISABLE = n
+# default = n
+
+# Average method for z0
+# If this flag is set to true (y) then the neutral Cdrag
+#  is averaged instead of the log(z0). This should be
+#  the prefered option. We still wish to keep the other
+#  option so we can come back if needed. If this is
+#  desired then one should set Z0CDRAG_AVE = n
+Z0CDRAG_AVE = y
+# default = y
+
+# parameters describing the surface (vegetation + soil) :
+#---------------------------------------------------------------------
+#
+# Should the vegetation be prescribed
+# This flag allows the user to impose a vegetation distribution
+#  and its characterisitcs. It is espacially interesting for 0D
+#  simulations. On the globe it does not make too much sense as
+#  it imposes the same vegetation everywhere
+IMPOSE_VEG = n
+# default = n
+
+# Flag to use old "interpolation" of vegetation map.
+# IF NOT IMPOSE_VEG and NOT LAND_USE
+#  If you want to recover the old (ie orchidee_1_2 branch) 
+#   "interpolation" of vegetation map.
+SLOWPROC_VEGET_OLD_INTERPOL = n
+# default = n
+
+# Vegetation distribution within the mesh (0-dim mode)
+# If IMPOSE_VEG
+# The fraction of vegetation is read from the restart file. If
+#  it is not found there we will use the values provided here.
+SECHIBA_VEG__01 = 0.2
+SECHIBA_VEG__02 = 0.0
+SECHIBA_VEG__03 = 0.0
+SECHIBA_VEG__04 = 0.0
+SECHIBA_VEG__05 = 0.0
+SECHIBA_VEG__06 = 0.0
+SECHIBA_VEG__07 = 0.0
+SECHIBA_VEG__08 = 0.0
+SECHIBA_VEG__09 = 0.0
+SECHIBA_VEG__10 = 0.8
+SECHIBA_VEG__11 = 0.0
+SECHIBA_VEG__12 = 0.0
+SECHIBA_VEG__13 = 0.0
+# default = 0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0
+
+# Maximum vegetation distribution within the mesh (0-dim mode)
+# If IMPOSE_VEG
+# The fraction of vegetation is read from the restart file. If
+#  it is not found there we will use the values provided here.
+SECHIBA_VEGMAX__01 = 0.2
+SECHIBA_VEGMAX__02 = 0.0
+SECHIBA_VEGMAX__03 = 0.0
+SECHIBA_VEGMAX__04 = 0.0
+SECHIBA_VEGMAX__05 = 0.0
+SECHIBA_VEGMAX__06 = 0.0
+SECHIBA_VEGMAX__07 = 0.0
+SECHIBA_VEGMAX__08 = 0.0
+SECHIBA_VEGMAX__09 = 0.0
+SECHIBA_VEGMAX__10 = 0.8
+SECHIBA_VEGMAX__11 = 0.0
+SECHIBA_VEGMAX__12 = 0.0
+SECHIBA_VEGMAX__13 = 0.0
+# default = 0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0
+
+# LAI for all vegetation types (0-dim mode)
+# If IMPOSE_VEG
+# The maximum LAI used in the 0dim mode. The values should be found
+#  in the restart file. The new values of LAI will be computed anyway
+#  at the end of the current day. The need for this variable is caused
+#  by the fact that the model may stop during a day and thus we have not
+#  yet been through the routines which compute the new surface conditions.
+SECHIBA_LAI__01 = 0.
+SECHIBA_LAI__02 = 8.
+SECHIBA_LAI__03 = 8.
+SECHIBA_LAI__04 = 4.
+SECHIBA_LAI__05 = 4.5
+SECHIBA_LAI__06 = 4.5
+SECHIBA_LAI__07 = 4.
+SECHIBA_LAI__08 = 4.5
+SECHIBA_LAI__09 = 4.
+SECHIBA_LAI__10 = 2.
+SECHIBA_LAI__11 = 2.
+SECHIBA_LAI__12 = 2.
+SECHIBA_LAI__13 = 2.
+# default = 0., 8., 8., 4., 4.5, 4.5, 4., 4.5, 4., 2., 2., 2., 2.
+
+# Height for all vegetation types (m)
+# If IMPOSE_VEG
+# The height used in the 0dim mode. The values should be found
+#  in the restart file. The new values of height will be computed anyway
+#  at the end of the current day. The need for this variable is caused
+#  by the fact that the model may stop during a day and thus we have not
+#  yet been through the routines which compute the new surface conditions.
+SLOWPROC_HEIGHT__01 = 0.
+SLOWPROC_HEIGHT__02 = 50.
+SLOWPROC_HEIGHT__03 = 50.
+SLOWPROC_HEIGHT__04 = 30.
+SLOWPROC_HEIGHT__05 = 30.
+SLOWPROC_HEIGHT__06 = 30.
+SLOWPROC_HEIGHT__07 = 20.
+SLOWPROC_HEIGHT__08 = 20.
+SLOWPROC_HEIGHT__09 = 20.
+SLOWPROC_HEIGHT__10 = .2
+SLOWPROC_HEIGHT__11 = .2
+SLOWPROC_HEIGHT__12 = .4
+SLOWPROC_HEIGHT__13 = .4
+# default = 0., 30., 30., 20., 20., 20., 15., 15., 15., .5, .6, 1.0, 1.0
+
+
+# Fraction of the 3 soil types (0-dim mode)
+# If IMPOSE_VEG
+# Determines the fraction for the 3 soil types
+#  in the mesh in the following order : sand loam and clay.
+SOIL_FRACTIONS__01 = 0.28
+SOIL_FRACTIONS__02 = 0.52
+SOIL_FRACTIONS__03 = 0.20
+# default = 0.28, 0.52, 0.20
+
+# Fraction of other surface types within the mesh (0-dim mode)
+# If IMPOSE_VEG
+# The fraction of ice, lakes, etc. is read from the restart file. If
+#  it is not found there we will use the values provided here.
+#  For the moment, there is only ice.
+SECHIBA_FRAC_NOBIO = 0.0
+# default = 0.0
+
+# Fraction of the clay fraction (0-dim mode)
+# If IMPOSE_VEG
+# Determines the fraction of clay in the grid box.
+CLAY_FRACTION = 0.2
+# default = 0.2
+
+# Should the surface parameters be prescribed
+# This flag allows the user to impose the surface parameters
+#  (Albedo Roughness and Emissivity). It is espacially interesting for 0D
+#  simulations. On the globe it does not make too much sense as
+#  it imposes the same vegetation everywhere
+IMPOSE_AZE = n
+# default = n
+
+# Emissivity of the surface for LW radiation
+# If IMPOSE_AZE
+# The surface emissivity used for compution the LE emission
+#  of the surface in a 0-dim version. Values range between 
+#  0.97 and 1.. The GCM uses 0.98.
+CONDVEG_EMIS = 1.0
+# default = 1.0
+
+# SW visible albedo for the surface
+# If IMPOSE_AZE
+# Surface albedo in visible wavelengths to be used 
+#  on the point if a 0-dim version of SECHIBA is used. 
+#  Look at the description of the forcing data for 
+#  the correct value.
+CONDVEG_ALBVIS = 0.25
+# default = 0.25
+
+# SW near infrared albedo for the surface
+# If IMPOSE_AZE
+# Surface albedo in near infrared wavelengths to be used 
+#  on the point if a 0-dim version of SECHIBA is used. 
+#  Look at the description of the forcing data for 
+#  the correct value.
+CONDVEG_ALBNIR = 0.25
+# default = 0.25
+
+# Surface roughness (m)
+# If IMPOSE_AZE
+# Surface rougness to be used on the point if a 0-dim version
+#  of SECHIBA is used. Look at the description of the forcing  
+#  data for the correct value.
+CONDVEG_Z0 = 0.15
+# default = 0.15_stnd
+
+# Height to be added to the height of the first level (m)
+# If IMPOSE_AZE
+# ORCHIDEE assumes that the atmospheric level height is counted
+#  from the zero wind level. Thus to take into account the roughness
+#  of tall vegetation we need to correct this by a certain fraction
+#  of the vegetation height. This is called the roughness height in
+#  ORCHIDEE talk.
+ROUGHHEIGHT = 0.0
+# default = 0.0
+
+# The snow albedo used by SECHIBA
+# This option allows the user to impose a snow albedo.
+#  Default behaviour is to use the model of snow albedo
+#  developed by Chalita (1993).
+CONDVEG_SNOWA = default
+# default = use the model of snow albedo developed by Chalita
+
+# Switch bare soil albedo dependent (if TRUE) on soil wetness
+# If TRUE, the model for bare soil albedo is the old formulation.
+#  Then it depend on the soil dry or wetness. If FALSE, it is the 
+#  new computation that is taken, it is only function of soil color.
+ALB_BARE_MODEL = FALSE
+# default = FALSE
+
+# Initial snow mass if not found in restart
+# The initial value of snow mass if its value is not found
+#   in the restart file. This should only be used if the model is 
+#   started without a restart file.
+HYDROL_SNOW = 0.0
+# default = 0.0
+
+
+# Initial snow age if not found in restart
+# The initial value of snow age if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_SNOWAGE = 0.0
+# default = 0.0
+
+# Initial snow amount on ice, lakes, etc. if not found in restart
+# The initial value of snow if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_SNOW_NOBIO = 0.0
+# default = 0.0
+
+# Initial snow age on ice, lakes, etc. if not found in restart
+# The initial value of snow age if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_SNOW_NOBIO_AGE = 0.0
+# default = 0.0
+
+# Initial soil moisture stress if not found in restart
+# The initial value of soil moisture stress if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_HUMR = 1.0
+# default = 1.0
+
+# Total depth of soil reservoir
+HYDROL_SOIL_DEPTH = 4.
+# default = 2.
+
+# Root profile
+# Default values were defined for 2 meters soil depth.
+# For 4 meters soil depth, you may use those ones :
+# 5., .4, .4, 1., .8, .8, 1., 1., .8, 4., 1., 4., 1.
+HYDROL_HUMCSTE = 5., .4, .4, 1., .8, .8, 1., 1., .8, 4., 1., 4., 1.
+# default =  5., .8, .8, 1., .8, .8, 1., 1., .8, 4., 4., 4., 4.
+
+# Initial restart deep soil moisture if not found in restart
+# The initial value of deep soil moisture if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file. Default behaviour is a saturated soil.
+HYDROL_BQSB = default
+# default = Maximum quantity of water (Kg/M3) * Total depth of soil reservoir = 150. * 2
+
+# Initial upper soil moisture if not found in restart
+# The initial value of upper soil moisture if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_GQSB = 0.0
+# default = 0.0
+
+# Initial upper reservoir depth if not found in restart
+# The initial value of upper reservoir depth if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_DSG = 0.0
+# default = 0.0
+
+# Initial dry soil above upper reservoir if not found in restart
+# The initial value of dry soil above upper reservoir if its value 
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file. The default behaviour
+#  is to compute it from the variables above. Should be OK most of 
+#  the time.
+HYDROL_DSP = default
+# default = Total depth of soil reservoir - HYDROL_BQSB / Maximum quantity of water (Kg/M3) = 0.0
+
+# Initial water on canopy if not found in restart
+# The initial value of moisture on canopy if its value 
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_QSV = 0.0
+# default = 0.0
+
+# Soil moisture on each soil tile and levels
+# The initial value of mc if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+HYDROL_MOISTURE_CONTENT = 0.3
+# default = 0.3
+
+# US_NVM_NSTM_NSLM
+# The initial value of us (relative moisture) if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+US_INIT = 0.0
+# default = 0.0
+
+# Coefficient for free drainage at bottom
+# The initial value of free drainage if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+FREE_DRAIN_COEF = 1.0, 1.0, 1.0
+# default = 1.0, 1.0, 1.0
+
+# Bare soil evap on each soil if not found in restart
+# The initial value of bare soils evap if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+EVAPNU_SOIL = 0.0
+# default = 0.0
+
+# Initial temperature if not found in restart
+# The initial value of surface temperature if its value is not found
+#  in the restart file. This should only be used if the model is 
+#  started without a restart file.
+ENERBIL_TSURF = 280.
+# default = 280.
+
+# Initial Soil Potential Evaporation
+# The initial value of soil potential evaporation if its value 
+#  is not found in the restart file. This should only be used if
+#  the model is started without a restart file. 
+ENERBIL_EVAPOT = 0.0
+# default = 0.0
+
+# Initial soil temperature profile if not found in restart
+# The initial value of the temperature profile in the soil if 
+#   its value is not found in the restart file. This should only 
+#   be used if the model is started without a restart file. Here
+#   we only require one value as we will assume a constant 
+#   throughout the column.
+THERMOSOIL_TPRO = 280.
+# default = 280.
+
+# Initial leaf CO2 level if not found in restart
+# The initial value of leaf_ci if its value is not found
+#  in the restart file. This should only be used if the model is
+#  started without a restart file.
+DIFFUCO_LEAFCI = 233.
+# default = 233.
+
+
+# Keep cdrag coefficient from gcm.
+# Set to .TRUE. if you want q_cdrag coming from GCM.
+#  Keep cdrag coefficient from gcm for latent and sensible heat fluxes.
+#  TRUE if q_cdrag on initialization is non zero (FALSE for off-line runs).
+CDRAG_FROM_GCM = y
+# default =  IF q_cdrag == 0 ldq_cdrag_from_gcm = .FALSE. ELSE .TRUE.
+
+
+# Artificial parameter to increase or decrease canopy resistance
+# Add from Nathalie - the 28 of March 2006 - advice from Fred Hourdin
+# By PFT.
+RVEG_PFT = 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.
+# default = 1.
+
+
+# Interception reservoir coefficient.
+# Transforms leaf area index into size of interception reservoir
+#  for slowproc_derivvar or stomate.
+SECHIBA_QSINT = 0.02
+# default = 0.1
+
+#**************************************************************************
+# LAND_USE
+#**************************************************************************
+
+# Read a land_use vegetation map
+# pft values are needed, max time axis is 293
+LAND_USE = y
+# default = n
+
+# Year of the land_use vegetation map readed
+# year off the pft map
+# If LAND_USE (11 = 1860 - 1850 +1 for PFTmap.20C3M.nc, 1 for PFTmap_IPCC_2000.nc) 
+VEGET_YEAR = 1
+# default = 282
+
+# booleen to indicate that a new LAND USE file will be used (since 1.9.5 version).
+# The parameter is used to bypass veget_year count 
+# and reinitialize it with VEGET_YEAR parameter.
+# Then it is possible to change LAND USE file.
+# If LAND_USE
+VEGET_REINIT = n
+# default = n
+
+# Update vegetation frequency (since 2.0 version)
+# The veget datas will be update each this time step.
+# If LAND_USE
+VEGET_UPDATE = _AUTO_
+# default = 1Y
+
+# treat land use modifications
+# With this variable, you can use a Land Use map
+# to simulate anthropic modifications such as   
+# deforestation.                                
+# If LAND_USE
+LAND_COVER_CHANGE = _AUTO_
+# default = y
+
+#**************************************************************************
+
+# agriculture allowed?
+# With this variable, you can determine
+#  whether agriculture is allowed
+AGRICULTURE = y
+# default = y
+
+# Harvert model for agricol PFTs.
+# Compute harvest above ground biomass for agriculture.
+# Change daily turnover.
+HARVEST_AGRI = y
+# default = y
+
+# herbivores allowed?
+# With this variable, you can activate herbivores 
+HERBIVORES = n
+# default = n
+
+# treat expansion of PFTs across a grid cell?
+# With this variable, you can determine
+#  whether we treat expansion of PFTs across a
+#  grid cell.
+TREAT_EXPANSION = n
+# default = n
+
+#**************************************************************************
+
+# Time within the day simulated
+# This is the time spent simulating the current day. This variable is
+#  prognostic as it will trigger all the computations which are
+#  only done once a day.
+SECHIBA_DAY = 0.0
+# default = 0.0
+
+# Time step of STOMATE and other slow processes
+# Time step (s) of regular update of vegetation
+#  cover, LAI etc. This is also the time step
+#  of STOMATE.
+DT_SLOW = 86400.
+# default = un_jour = 86400.
+
+#**************************************************************************
+
+# Allows to switch on the multilayer hydrology of CWRR
+# This flag allows the user to decide if the vertical
+#  hydrology should be treated using the multi-layer 
+#  diffusion scheme adapted from CWRR by Patricia de Rosnay.
+#  by default the Choisnel hydrology is used.
+HYDROL_CWRR = n 
+# default = n
+
+# do horizontal diffusion?
+# If TRUE, then water can diffuse horizontally between
+#  the PFTs' water reservoirs.
+HYDROL_OK_HDIFF = n
+# default = n
+ 
+
+# time scale (s) for horizontal diffusion of water
+# If HYDROL_OK_HDIFF
+# Defines how fast diffusion occurs horizontally between
+#  the individual PFTs' water reservoirs. If infinite, no
+#  diffusion.
+HYDROL_TAU_HDIFF = 1800.
+# default = 86400.
+
+# Percent by PFT of precip that is not intercepted by the canopy (since TAG 1.8).
+# During one rainfall event, PERCENT_THROUGHFALL_PFT% of the incident rainfall
+#  will get directly to the ground without being intercepted, for each PFT..
+PERCENT_THROUGHFALL_PFT = 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30.
+# default = 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30., 30.
+
+# Decides if we route the water or not
+# This flag allows the user to decide if the runoff
+#  and drainage should be routed to the ocean
+#  and to downstream grid boxes.
+RIVER_ROUTING = y
+# default = n
+
+# Name of file which contains the routing information
+# The file provided here should allow the routing module to
+#  read the high resolution grid of basins and the flow direction 
+#  from one mesh to the other.
+ROUTING_FILE = routing.nc
+# default = routing.nc
+
+# Time step of the routing scheme
+# If RIVER_ROUTING
+# This values gives the time step in seconds of the routing scheme. 
+#   It should be multiple of the main time step of ORCHIDEE. One day
+#   is a good value.
+ROUTING_TIMESTEP = 86400
+# default = 86400
+
+# Number of rivers 
+# If RIVER_ROUTING
+# This parameter chooses the number of largest river basins
+#  which should be treated as independently as rivers and not
+#  flow into the oceans as diffusion coastal flow.
+ROUTING_RIVERS = 50
+# default = 50
+
+# Should we compute an irrigation flux 
+# This parameters allows the user to ask the model
+#  to compute an irigation flux. This performed for the
+#  on very simple hypothesis. The idea is to have a good
+#  map of irrigated areas and a simple function which estimates
+#  the need to irrigate.
+DO_IRRIGATION = n
+# default = n
+
+# Name of file which contains the map of irrigated areas
+# If IRRIGATE
+# The name of the file to be opened to read the field
+#  with the area in m^2 of the area irrigated within each
+#  0.5 0.5 deg grid box. The map currently used is the one
+#  developed by the Center for Environmental Systems Research 
+#  in Kassel (1995).
+IRRIGATION_FILE = irrigated.nc
+# default = irrigated.nc
+
+# Should we include floodplains 
+# This parameters allows the user to ask the model
+#  to take into account the flood plains and return 
+#  the water into the soil moisture. It then can go 
+#  back to the atmopshere. This tried to simulate 
+#  internal deltas of rivers.
+DO_FLOODPLAINS = n
+# default = n
+
+#**************************************************************************
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_high
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_high	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_high	(revision 2180)
@@ -0,0 +1,131 @@
+#
+# Parametres fichiers de sortie
+#
+# Noms des fichiers
+phys_out_filenames=      histmth histday histhf   histhf3h  histhf3hm histstn
+# Sortir ou non les fichiers
+phys_out_filekeys= _AUTO_
+# Niveaux de sorties
+phys_out_filelevels=     5       5       5        5         5         5
+### Type de fichier : global (n) ou stations (y)
+phys_out_filestations =  n       n       n        n         n         y
+### Frequences des sorties
+phys_out_filetimesteps = 1.mth,  1.day,  0.25day, 0.125day, 0.125day, 1800.s
+#
+#
+### variables niveaux pressions 100, 50, 10 hPa a 3h-inst - F.Lott
+flag_t100       = 1, 7, 7, 5, 10, 10
+flag_u100       = 1, 7, 7, 5, 10, 10
+flag_v100       = 1, 7, 7, 5, 10, 10
+flag_w100       = 1, 7, 7, 5, 10, 10
+flag_t50        = 1, 7, 7, 5, 10, 10
+flag_u50        = 1, 7, 7, 5, 10, 10
+flag_v50        = 1, 7, 7, 5, 10, 10
+flag_w50        = 1, 7, 7, 5, 10, 10
+flag_t10        = 1, 7, 7, 5, 10, 10
+flag_u10        = 1, 7, 7, 5, 10, 10
+flag_v10        = 1, 7, 7, 5, 10, 10
+flag_w10        = 1, 7, 7, 5, 10, 10
+# more variables for level 5 histday/month: vitw and pres
+# Vertical wind
+flag_vitw         =  2, 3, 7, 6, 6, 6
+# Air pressure
+flag_pres         =  2, 3, 7, 6, 6, 6
+# w500 for histday
+flag_w500         =  1, 5, 3, 10, 10, 10
+# t700 for histday
+flag_t700         =  1, 5, 3, 10, 10, 10
+# Cloud fraction
+flag_rneb         =  2, 5, 10, 5, 10, 10
+# Aga sortie avec niveau 2
+flag_Aga          =  2, 10, 10, 10, 10, 10
+# niveaux maximum 5 mensuel pour variables CFMIP
+flag_rlu          =  5, 10, 10, 10, 10, 10
+flag_rsu          =  5, 10, 10, 10, 10, 10
+flag_rld          =  5, 10, 10, 10, 10, 10
+flag_rsd          =  5, 10, 10, 10, 10, 10
+flag_rlucs        =  5, 10, 10, 10, 10, 10
+flag_rsucs        =  5, 10, 10, 10, 10, 10
+flag_rldcs        =  5, 10, 10, 10, 10, 10
+flag_rsdcs        =  5, 10, 10, 10, 10, 10
+flag_tnt          =  5, 10, 10, 10, 10, 10
+flag_dtdyn        =  4, 10, 10, 10, 10, 10
+flag_dtphy        =  4, 10, 10, 10, 10, 10
+flag_dtlschr      =  5, 10, 10, 10, 10, 10
+flag_tntr         =  5, 10, 10, 10, 10, 10
+flag_tntc         =  5, 10, 10, 10, 10, 10
+flag_tntscpbl     =  5, 10, 10, 10, 10, 10
+flag_tnhus        =  5, 10, 10, 10, 10, 10
+flag_dqdyn        =  4, 10, 10, 10, 10, 10
+flag_tnhusc       =  5, 10, 10, 10, 10, 10
+flag_dqvdf        =  5, 10, 10, 10, 10, 10
+flag_tnhusscpbl   =  5, 10, 10, 10, 10, 10
+flag_dqphy        =  2, 10, 10, 10, 10, 10
+flag_evu          =  5, 10, 10, 10, 10, 10
+flag_kz           =  4, 10, 10, 10, 10, 10
+###
+# more variables for t tendency monthly
+###
+flag_dtvdf        =  5, 10, 10, 10, 10, 10
+flag_dteva        =  5, 10, 10, 10, 10, 10
+flag_dtcon        =  4, 10, 10, 10, 10, 10
+flag_dtajs        =  4, 10, 10, 10, 10, 10
+flag_dtlsc        =  4, 10, 10, 10, 10, 10
+flag_dtoro        =  4, 10, 10, 10, 10, 10
+flag_dtlif        =  4, 10, 10, 10, 10, 10
+flag_dthin        =  4, 10, 10, 10, 10, 10
+flag_dtec         =  4, 10, 10, 10, 10, 10
+### more variables for q tendency monthly
+flag_dqeva        =  5, 10, 10, 10, 10, 10
+flag_dqcon        =  4, 10, 10, 10, 10, 10
+flag_dqajs        =  4, 10, 10, 10, 10, 10
+flag_dqlsc        =  5, 10, 10, 10, 10, 10
+### nouvelle physique monthly
+flag_dtthe        =  4, 10, 10, 10, 10, 10
+flag_dtwak        =  4, 5, 10, 10, 10, 10
+flag_dqthe        =  4, 10, 10, 10, 10, 10
+flag_dqwak        =  4, 5, 10, 10, 10, 10
+flag_ftime_th     =  4, 10, 10, 5, 10, 10
+#
+# Parametres niveau de sorties differents fichiers
+#
+### parametres pour hist*NMC.nc
+#lev_histdayNMC: nombre de niveaux sur la verticale dans le fichier
+#                histdayNMC: 8 ou 17
+lev_histdayNMC=8
+### - ok_histNMC = y/n, y/n, y/n pour avoir les sorties NMC mensuelles, journalieres et haute frequence
+ok_histNMC = _AUTO_
+
+#
+# Parametres simulateur COSP (CFMIP Observational Simulator Package)
+#
+### ok_cosp=y/n flag simulateur COSP
+ok_cosp= _AUTO_
+### freq_COSP = frequence d'appel de COSP en secondes
+freq_COSP=10800.
+### ok_mensuelCOSP=y/n sortir fichier mensuel COSP histmthCOSP.nc, =n pas de fichier histmthCOSP.nc
+ok_mensuelCOSP= _AUTO_
+### ok_journeCOSP=y/n sortir fichier journalier histdayCOSP.nc, =n pas de fichier histdayCOSP.nc
+ok_journeCOSP= _AUTO_
+### ok_hfCOSP=y/n, ecrire sorties  haute frequence histhfCOSP.nc, =n pas de fichier histhfCOSP.nc
+ok_hfCOSP= _AUTO_
+#
+# Parametres simulateur ISCCP
+#
+### ok_isccp=y/n flag simulateur ISCCP
+ok_isccp=n
+### freqin_isccp = frequence input en secondes du simulateur ISCCP
+freq_ISCCP=10800.
+### freqout_isccp = frequence output en jours du simulateur ISCCP
+ecrit_ISCCP= _AUTO_
+### top_height = flag choix calcul nuages par le simulateur en utilisant 
+# -              les donnees IR et/ou VIS et l algorithme ISCCP-D1
+# - top_height = 1 -> algo IR-VIS
+# - top_height = 2 -> identique a 1, mais "ptop(ibox)=pfull(ilev)"
+# - top_height = 3 -> algo IR
+top_height = 1
+### overlap =    Hypothese de Recouvrement (HR) utilisee pour le simulateur ISCCP
+# - overlap=1    Max overlap
+# - overlap=2    Random overlap
+# - overlap=3    Max/Random overlap
+overlap = 3
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_low
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_low	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_low	(revision 2180)
@@ -0,0 +1,60 @@
+#
+# Parametres fichiers de sortie
+#
+# Noms des fichiers
+phys_out_filenames=      histmth histday histhf   histhf3h  histhf3hm histstn
+# Sortir ou non les fichiers
+phys_out_filekeys=  _AUTO_
+# Niveaux de sorties
+phys_out_filelevels=     5       2       2        5         5         5
+### Type de fichier : global (n) ou stations (y)
+phys_out_filestations =  n       n       n        n         n         y
+### Frequences des sorties
+phys_out_filetimesteps = 1.mth,  1.day,  0.25day, 0.125day, 0.125day, 1800.s
+#
+#
+# Parametres niveau de sorties differents fichiers
+#
+### parametres pour hist*NMC.nc
+#lev_histdayNMC: nombre de niveaux sur la verticale dans le fichier
+#                histdayNMC: 8 ou 17
+lev_histdayNMC=8
+### - ok_histNMC = y/n, y/n, y/n pour avoir les sorties NMC mensuelles, journalieres et haute frequence
+ok_histNMC = _AUTO_
+
+#
+# Parametres simulateur COSP (CFMIP Observational Simulator Package)
+#
+### ok_cosp=y/n flag simulateur COSP
+ok_cosp= _AUTO_
+### freq_COSP = frequence d'appel de COSP en secondes
+freq_COSP=10800.
+### ok_mensuelCOSP=y/n sortir fichier mensuel COSP histmthCOSP.nc, =n pas de fichier histmthCOSP.nc
+ok_mensuelCOSP= _AUTO_
+### ok_journeCOSP=y/n sortir fichier journalier histdayCOSP.nc, =n pas de fichier histdayCOSP.nc
+ok_journeCOSP= _AUTO_
+### ok_hfCOSP=y/n, ecrire sorties  haute frequence histhfCOSP.nc, =n pas de fichier histhfCOSP.nc
+ok_hfCOSP= _AUTO_
+
+#
+# Parametres simulateur ISCCP
+#
+### ok_isccp=y/n flag simulateur ISCCP
+ok_isccp=n
+### freqin_isccp = frequence input en secondes du simulateur ISCCP
+freq_ISCCP=10800.
+### freqout_isccp = frequence output en jours du simulateur ISCCP
+ecrit_ISCCP= _AUTO_
+### top_height = flag choix calcul nuages par le simulateur en utilisant 
+# -              les donnees IR et/ou VIS et l algorithme ISCCP-D1
+# - top_height = 1 -> algo IR-VIS
+# - top_height = 2 -> identique a 1, mais "ptop(ibox)=pfull(ilev)"
+# - top_height = 3 -> algo IR
+top_height = 1
+### overlap =    Hypothese de Recouvrement (HR) utilisee pour le simulateur ISCCP
+# - overlap=1    Max overlap
+# - overlap=2    Random overlap
+# - overlap=3    Max/Random overlap
+overlap = 3
+
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_medium
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_medium	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/output.def_medium	(revision 2180)
@@ -0,0 +1,131 @@
+#
+# Parametres fichiers de sortie
+#
+# Noms des fichiers
+phys_out_filenames=      histmth histday histhf   histhf3h  histhf3hm histstn
+# Sortir ou non les fichiers
+phys_out_filekeys= _AUTO_
+# Niveaux de sorties
+phys_out_filelevels=     5       5       2        5         5         5
+### Type de fichier : global (n) ou stations (y)
+phys_out_filestations =  n       n       n        n         n         y
+### Frequences des sorties
+phys_out_filetimesteps = 1.mth,  1.day,  0.25day, 0.125day, 0.125day, 1800.s
+#
+#
+### variables niveaux pressions 100, 50, 10 hPa a 3h-inst - F.Lott
+flag_t100       = 1, 7, 7, 5, 10, 10
+flag_u100       = 1, 7, 7, 5, 10, 10
+flag_v100       = 1, 7, 7, 5, 10, 10
+flag_w100       = 1, 7, 7, 5, 10, 10
+flag_t50        = 1, 7, 7, 5, 10, 10
+flag_u50        = 1, 7, 7, 5, 10, 10
+flag_v50        = 1, 7, 7, 5, 10, 10
+flag_w50        = 1, 7, 7, 5, 10, 10
+flag_t10        = 1, 7, 7, 5, 10, 10
+flag_u10        = 1, 7, 7, 5, 10, 10
+flag_v10        = 1, 7, 7, 5, 10, 10
+flag_w10        = 1, 7, 7, 5, 10, 10
+#
+# more variables for level 5 : vitw and pres
+# Vertical wind
+flag_vitw         =  2, 3, 7, 6, 6, 6
+# Air pressure
+flag_pres         =  2, 3, 7, 6, 6, 6
+# w500 for histday
+flag_w500         =  1, 5, 3, 10, 10, 10
+# t700 for histday
+flag_t700         =  1, 5, 3, 10, 10, 10
+# Cloud fraction
+flag_rneb         =  2, 5, 10, 5, 10, 10
+# Aga sortie avec niveau 2
+flag_Aga          =  2, 10, 10, 10, 10, 10
+# niveaux maximum 5 mensuel pour variables CFMIP
+flag_rlu          =  5, 10, 10, 10, 10, 10
+flag_rsu          =  5, 10, 10, 10, 10, 10
+flag_rld          =  5, 10, 10, 10, 10, 10
+flag_rsd          =  5, 10, 10, 10, 10, 10
+flag_rlucs        =  5, 10, 10, 10, 10, 10
+flag_rsucs        =  5, 10, 10, 10, 10, 10
+flag_rldcs        =  5, 10, 10, 10, 10, 10
+flag_rsdcs        =  5, 10, 10, 10, 10, 10
+flag_tnt          =  5, 10, 10, 10, 10, 10
+flag_dtdyn        =  4, 10, 10, 10, 10, 10
+flag_dtphy        =  4, 10, 10, 10, 10, 10
+flag_dtlschr      =  5, 10, 10, 10, 10, 10
+flag_tntr         =  5, 10, 10, 10, 10, 10
+flag_tntc         =  5, 10, 10, 10, 10, 10
+flag_tntscpbl     =  5, 10, 10, 10, 10, 10
+flag_tnhus        =  5, 10, 10, 10, 10, 10
+flag_dqdyn        =  4, 10, 10, 10, 10, 10
+flag_tnhusc       =  5, 10, 10, 10, 10, 10
+flag_dqvdf        =  5, 10, 10, 10, 10, 10
+flag_tnhusscpbl   =  5, 10, 10, 10, 10, 10
+flag_dqphy        =  2, 10, 10, 10, 10, 10
+flag_evu          =  5, 10, 10, 10, 10, 10
+flag_kz           =  4, 10, 10, 10, 10, 10
+###
+# more variables for t tendency monthly
+###
+flag_dtvdf        =  5, 10, 10, 10, 10, 10
+flag_dteva        =  5, 10, 10, 10, 10, 10
+flag_dtcon        =  4, 10, 10, 10, 10, 10
+flag_dtajs        =  4, 10, 10, 10, 10, 10
+flag_dtlsc        =  4, 10, 10, 10, 10, 10
+flag_dtoro        =  4, 10, 10, 10, 10, 10
+flag_dtlif        =  4, 10, 10, 10, 10, 10
+flag_dthin        =  4, 10, 10, 10, 10, 10
+flag_dtec         =  4, 10, 10, 10, 10, 10
+### more variables for q tendency monthly
+flag_dqeva        =  5, 10, 10, 10, 10, 10
+flag_dqcon        =  4, 10, 10, 10, 10, 10
+flag_dqajs        =  4, 10, 10, 10, 10, 10
+flag_dqlsc        =  5, 10, 10, 10, 10, 10
+### nouvelle physique monthly
+flag_dtthe        =  4, 10, 10, 10, 10, 10
+flag_dtwak        =  4, 5, 10, 10, 10, 10
+flag_dqthe        =  4, 10, 10, 10, 10, 10
+flag_dqwak        =  4, 5, 10, 10, 10, 10
+flag_ftime_th     =  4, 10, 10, 5, 10, 10
+#
+# Parametres niveau de sorties differents fichiers
+#
+### parametres pour hist*NMC.nc
+#lev_histdayNMC: nombre de niveaux sur la verticale dans le fichier
+#                histdayNMC: 8 ou 17
+lev_histdayNMC=8
+### - ok_histNMC = y/n, y/n, y/n pour avoir les sorties NMC mensuelles, journalieres et haute frequence
+ok_histNMC = _AUTO_
+#
+# Parametres simulateur COSP (CFMIP Observational Simulator Package)
+#
+### ok_cosp=y/n flag simulateur COSP
+ok_cosp= _AUTO_
+### freq_COSP = frequence d'appel de COSP en secondes
+freq_COSP=10800.
+### ok_mensuelCOSP=y/n sortir fichier mensuel COSP histmthCOSP.nc, =n pas de fichier histmthCOSP.nc
+ok_mensuelCOSP= _AUTO_
+### ok_journeCOSP=y/n sortir fichier journalier histdayCOSP.nc, =n pas de fichier histdayCOSP.nc
+ok_journeCOSP= _AUTO_
+### ok_hfCOSP=y/n, ecrire sorties  haute frequence histhfCOSP.nc, =n pas de fichier histhfCOSP.nc
+ok_hfCOSP= _AUTO_
+#
+# Parametres simulateur ISCCP
+#
+### ok_isccp=y/n flag simulateur ISCCP
+ok_isccp=n
+### freqin_isccp = frequence input en secondes du simulateur ISCCP
+freq_ISCCP=10800.
+### freqout_isccp = frequence output en jours du simulateur ISCCP
+ecrit_ISCCP= _AUTO_
+### top_height = flag choix calcul nuages par le simulateur en utilisant 
+# -              les donnees IR et/ou VIS et l algorithme ISCCP-D1
+# - top_height = 1 -> algo IR-VIS
+# - top_height = 2 -> identique a 1, mais "ptop(ibox)=pfull(ilev)"
+# - top_height = 3 -> algo IR
+top_height = 1
+### overlap =    Hypothese de Recouvrement (HR) utilisee pour le simulateur ISCCP
+# - overlap=1    Max overlap
+# - overlap=2    Random overlap
+# - overlap=3    Max/Random overlap
+overlap = 3
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L19_AP
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L19_AP	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L19_AP	(revision 2180)
@@ -0,0 +1,97 @@
+## $Id$
+#
+##  Choix ou non  de  New oliq               
+new_oliq=y
+##  Activation ou non de la parametrisation de Hines pour la strato
+ok_hines=n
+##  Orodr  ou  non   pour l orographie              
+ok_orodr=y
+##  Orolf  ou  non   pour l orographie              
+ok_orolf=y
+##   Si = .T. ,  lecture du fichier limit avec la bonne annee             
+ok_limitvrai=n
+##  Flag  pour la convection : 1 pour LMD, 2 pour Tiedtke, 3 KE(nvlle version JYG), 30 KE(version IPCC AR4), 4 KE vect
+iflag_con=30
+## Facteur multiplication des precip convectives dans KE
+cvl_corr=1.0
+#
+#
+### niveau du diagnostique de conservation d energie
+if_ebil=0
+#
+# parametres KE
+#
+### epmax = Efficacite precipitation maximale
+epmax = .99
+### ok_adj_ema = ?? pas utilise
+ok_adj_ema = n
+### iflag_clw Flag calcul eau liquide
+# - iflag_clw=0 : qcond_incld(i,l) = em_qcondc(l)
+# - iflag_clw=1 : qcond_incld(i,l) = em_qcond(l)
+# - iflag_clw=2 : eau liquide diagnostique en fonction de la Precip
+iflag_clw = 1
+# 
+# parametres nuages
+#
+### cld_lc_lsc  contenu en eau liquide des nuages large-scale (fisrtilp) 
+cld_lc_lsc = 2.6e-4
+### cld_lc_con  contenu en eau liquide des nuages convectifs (fisrtilp) 
+cld_lc_con = 2.6e-4
+### cld_tau_lsc cte de temps utilisee pour eliminer l eau large-scale (fisrtilp) 
+cld_tau_lsc = 3600.
+### cld_tau_con cte de temps utilisee pour eliminer l eau convective (fisrtilp) 
+cld_tau_con = 3600.
+### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace large-scale (fisrtilp) 
+ffallv_lsc = 1.
+### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace convectifs (fisrtilp) 
+ffallv_con = 1.
+### coef_eva coef evaporation precips eau/glace (fisrtilp/fisrtilp_tr?/conlmd?)
+coef_eva = 2.e-5
+### reevap_ice  reevaporation de toute la precip dans la couche du dessous pour la glace (fisrtilp) 
+reevap_ice = y
+### iflag_cldcon  flag pour calculer ratqsc=F(ratqsbas,fact_cldcon,q_seri) (physiq) 
+# - iflag_cldcon<=-1 diag. rain_Tiedtke 
+# - iflag_cldcon=1, ratqsc=ratqsbas+fact_cldcon*(q_seri(1)-q_seri(k))/q_seri(k)
+# - iflag_cldcon=1/2, ratqs=max(ratqs,ratqsc)
+# - iflag_cldcon=3,   ratqs=ratqss
+iflag_cldcon = 3
+### iflag_pdf :  flag calcul distribution sous-maille de l eau et des nuages 
+# - iflag_pdf=0, version ratqs, 
+# - iflag_pdf=1, calcul eau condensee, fraction nuageuse, eau nuageuse a partir
+# -              des PDFS de Sandrine Bony 
+iflag_pdf = 1
+### fact_cldcon  constante calcul ratqsc (voir iflag_cldcon) et proprietes nuages convectifs, clwcon0 (physiq.F) 
+fact_cldcon = 1.
+### facttemps=   facteur de relaxation de ratqs (iflag_cldcon=1/2) et rnebcon (iflag_cldcon=3)
+facttemps = 0.
+## ok_newmicro   =y appel newmicro , =n appel nuage (calcul epaisseur optique et emmissivite des nuages) 
+ok_newmicro = y
+### iflag_ratqs=0 correspond a la version IPCC AR4 
+iflag_ratqs=0
+### ratqsbas     ratqs en bas si iflag_cldcon=1 
+ratqsbas = 0.005
+### ratqshaut    ratqs en haut pour ratqss "stables"  
+ratqshaut = 0.33
+### rad_froid    rayon cristaux des nuages de glace "froids" 
+rad_froid = 35
+### rad_chau1    rayon goutelettes d eau chauds", en haut: k=4-klev 
+rad_chau1=12
+### rad_chau2    rayon goutelettes d eau chauds", en bas: k=1-3  
+rad_chau2=11
+# 
+# Coefficient et parametres sur les drags
+#
+f_cdrag_ter=1.
+f_cdrag_stable=1.
+f_cdrag_oce=0.8
+f_rugoro=0.
+### ksta_ter      coef.diffusion minimale sur terre/sic/lic 
+ksta_ter=1.e-7
+### cdmmax =     cdrag maximum pour le moment
+cdmmax = 2.5E-3
+### cdhmax =     cdrag maximum pour l energie
+cdhmax = 2.0E-3
+
+### nsplit_phys (D=1) 
+nsplit_phys=1
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L39_AP
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L39_AP	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L39_AP	(revision 2180)
@@ -0,0 +1,97 @@
+## $Id$
+#
+##  Choix ou non  de  New oliq               
+new_oliq=y
+##  Activation ou non de la parametrisation de Hines pour la strato
+ok_hines=y
+##  Orodr  ou  non   pour l orographie              
+ok_orodr=y
+##  Orolf  ou  non   pour l orographie              
+ok_orolf=y
+##   Si = .T. ,  lecture du fichier limit avec la bonne annee             
+ok_limitvrai=n
+##  Flag  pour la convection : 1 pour LMD, 2 pour Tiedtke, 3 KE(nvlle version JYG), 30 KE(version IPCC AR4), 4 KE vect
+iflag_con=30
+## Facteur multiplication des precip convectives dans KE
+cvl_corr=1.0
+#
+#
+
+### niveau du diagnostique de conservation d energie
+if_ebil=0
+#
+# parametres KE
+#
+### epmax = Efficacite precipitation maximale
+epmax = .999
+### ok_adj_ema = ?? pas utilise
+ok_adj_ema = n
+### iflag_clw Flag calcul eau liquide
+# - iflag_clw=0 : qcond_incld(i,l) = em_qcondc(l)
+# - iflag_clw=1 : qcond_incld(i,l) = em_qcond(l)
+# - iflag_clw=2 : eau liquide diagnostique en fonction de la Precip
+iflag_clw = 1
+# 
+# parametres nuages
+#
+### cld_lc_lsc  contenu en eau liquide des nuages large-scale (fisrtilp) 
+cld_lc_lsc = 4.16e-4
+### cld_lc_con  contenu en eau liquide des nuages convectifs (fisrtilp) 
+cld_lc_con = 4.16e-4
+### cld_tau_lsc cte de temps utilisee pour eliminer l eau large-scale (fisrtilp) 
+cld_tau_lsc = 1800.
+### cld_tau_con cte de temps utilisee pour eliminer l eau convective (fisrtilp) 
+cld_tau_con = 1800.
+### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace large-scale (fisrtilp) 
+ffallv_lsc = 0.5
+### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace convectifs (fisrtilp) 
+ffallv_con = 0.5
+### coef_eva coef evaporation precips eau/glace (fisrtilp/fisrtilp_tr?/conlmd?)
+coef_eva = 2.e-5
+### reevap_ice  reevaporation de toute la precip dans la couche du dessous pour la glace (fisrtilp) 
+reevap_ice = y
+### iflag_cldcon  flag pour calculer ratqsc=F(ratqsbas,fact_cldcon,q_seri) (physiq) 
+# - iflag_cldcon<=-1 diag. rain_Tiedtke 
+# - iflag_cldcon=1, ratqsc=ratqsbas+fact_cldcon*(q_seri(1)-q_seri(k))/q_seri(k)
+# - iflag_cldcon=1/2, ratqs=max(ratqs,ratqsc)
+# - iflag_cldcon=3,   ratqs=ratqss
+iflag_cldcon = 3
+### iflag_pdf :  flag calcul distribution sous-maille de l eau et des nuages 
+# - iflag_pdf=0, version ratqs, 
+# - iflag_pdf=1, calcul eau condensee, fraction nuageuse, eau nuageuse a partir
+# -              des PDFS de Sandrine Bony 
+iflag_pdf = 1
+### fact_cldcon  constante calcul ratqsc (voir iflag_cldcon) et proprietes nuages convectifs, clwcon0 (physiq.F) 
+fact_cldcon = 1.
+### facttemps=   facteur de relaxation de ratqs (iflag_cldcon=1/2) et rnebcon (iflag_cldcon=3)
+facttemps = 0.
+## ok_newmicro   =y appel newmicro , =n appel nuage (calcul epaisseur optique et emmissivite des nuages) 
+ok_newmicro = y
+### iflag_ratqs=0 correspond a la version IPCC AR4 
+iflag_ratqs=0
+### ratqsbas     ratqs en bas si iflag_cldcon=1 
+ratqsbas = 0.005
+### ratqshaut    ratqs en haut pour ratqss "stables"  
+ratqshaut = 0.33
+### rad_froid    rayon cristaux des nuages de glace "froids" 
+rad_froid = 35
+### rad_chau1    rayon goutelettes d eau chauds", en haut: k=4-klev 
+rad_chau1=12
+### rad_chau2    rayon goutelettes d eau chauds", en bas: k=1-3  
+rad_chau2=11
+# 
+# Coefficient et parametres sur les drags
+#
+f_cdrag_ter=1.
+f_cdrag_stable=1.
+f_cdrag_oce=0.8
+f_rugoro=0.
+### ksta_ter      coef.diffusion minimale sur terre/sic/lic 
+ksta_ter=1.e-7
+### cdmmax =     cdrag maximum pour le moment
+cdmmax = 2.5E-3
+### cdhmax =     cdrag maximum pour l energie
+cdhmax = 2.0E-3
+
+### nsplit_phys (D=1) 
+nsplit_phys=1
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L39_NPv3.1
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L39_NPv3.1	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/physiq.def_L39_NPv3.1	(revision 2180)
@@ -0,0 +1,132 @@
+##############################################################################
+# PARAMETRES ET CLES DE CONFIGURATION LMDZ 
+# Cette parie sera bientot extrait dans un fichier config.def
+##############################################################################
+# D: Valeur par default
+#
+##############################################################################
+# PARAMETRES ET CLES DE LA PHYSIQUE LMDZ
+##############################################################################
+# D: Valeur par default
+#
+#Parametres Orographiques et cdrags
+#**********************************
+##   Si=.T. ,  lecture du fichier limit avec la bonne annee 
+ok_limitvrai=n
+#Cdrags 
+f_cdrag_stable=1.
+f_cdrag_ter=1.
+f_cdrag_oce=0.7
+#cdmmax
+cdmmax=2.5E-3
+#cdhmax
+cdhmax=2.0E-3
+##  Orodr  ou  non   pour l orographie
+ok_orodr=y
+##  Orolf  ou  non   pour l orographie              
+ok_orolf=y
+#Rugoro
+f_rugoro=0.
+#
+# Rayonnement
+#*********************
+# activation du nouveau code de rayonnement RRTM
+# 0 : Ancien code et 1 : RRTM (D=0)
+iflag_rrtm=0
+#
+##  Activation ou non de la parametrisation de Hines pour la strato
+#******************************************************************
+ok_hines=y
+#
+# Parametres nuages
+#******************
+#seuils de la precipitation des nuages strateformes (D: 2.6e-4 2.6e-4)
+cld_lc_lsc=6.e-4
+cld_lc_con=6.e-4
+#constante de temps pour eleminer eau lsc et convective (D: 3600. 3600.)
+cld_tau_lsc=1800.
+cld_tau_con=1800.
+#facteurs correctifs sur la vitesse de chute des cristaux de glace (D: 1 1)
+ffallv_lsc=1.35
+ffallv_con=1.35
+#coefficient sur la reevaporation de la pluie (D: 2.e-5 n)
+coef_eva=1e-4
+reevap_ice=y
+#calcul des proprietes des nuages convectifs (D:1 0.375 1.e-4) 
+iflag_cldcon=6
+fact_cldcon=1.
+facttemps=0.
+#calcul eau condensee et fraction nuageuse a partir des PDF (D:0, 0:version avec ratqs sinon nouvelles PDFs)  
+iflag_pdf=1
+#calcul epaisseur optique et emmissivite des nuages (D: y 1 0.01 0.3)
+ok_newmicro=y
+iflag_ratqs=2
+ratqsbas=0.002
+ratqshaut=0.25
+#rayon effectif pour les nuages de glace (D:35)
+rad_froid=35
+#rayons effectifs pour les nuages eau liq (tailles des gouttes d eau nuageuse, D: 13 9)
+rad_chau1=12
+rad_chau2=11
+##  Choix ou non  de  New oliq               
+new_oliq=y
+#
+rei_min=20.
+rei_max=61.29
+#
+t_glace_min=258.
+t_glace_max=273.13
+#
+# Flags Convection 
+#*****************
+#flag  pour la convection (D:2, 1:LMD, 2:Tiedtke, 3:KE nouvelle physique, 30:KE IPCC)
+iflag_con=3
+#niveau de sorties des diagnos sur la conservation energie
+if_ebil=0
+#efficacite de precepitation maxim (D:.993)
+epmax=0.997
+#ajustement convectif sec au debut de la convection (D: n 0)
+ok_adj_ema=n
+iflag_clw=0
+#fermeture convective (D:1, 0:AR4, 2:ALE and ALP)
+iflag_clos=2
+#loi de melange a l entrainement  (D:1, 0:AR4=PDF plate, 1=PDF)
+iflag_mix=1
+#poids des PDFs plate et en cloche (D: 1 0)
+qqa1=1.
+qqa2=0.
+# Facteur multiplication des precip convectives dans KE
+cvl_corr=1.0
+#
+Fmax=0.65
+#
+# Flags Couche limite
+#********************
+#shema de CL des thermiques (D:0, 0:ajustement sec,=>1:versions thermiques) 
+iflag_thermals=15
+#pas de temps du spliting pour les thermiques
+nsplit_thermals=1
+tau_thermals=0.
+iflag_thermals_ed=10
+iflag_thermals_optflux=0
+#shema de la couche de surface (D:1, 1:LMD, 8:Mellor-Yamada) 
+iflag_pbl=8
+#diffusion turbulente
+ksta_ter=1.e-7
+ksta=1.e-10
+#ok_kzmin : calcul Kzmin dans la CL de surface
+ok_kzmin=y
+#couplage ou non avec la convection
+iflag_coupl=5 (0:AR4 et 1:nouvelle physique)
+seuil_inversion=-0.08
+#rendement sur la puissance fournie par les thermiques a la convection
+alp_bl_k=0.5
+#
+# Flags wakes
+#************
+#activation ou non des wakes (D:0, 0:AR4, 1:nouvelle physique) 
+iflag_wake=1
+alp_offset=0.
+
+nsplit_phys=2
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/run.def
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/run.def	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/run.def	(revision 2180)
@@ -0,0 +1,54 @@
+# $Id$
+# 
+# INCLUDEDEF=orchidee.def, inca.def, reprobus.def and guide.def are added 
+# automatically by lmdz.driver if one of these components are activated.
+INCLUDEDEF=physiq.def
+INCLUDEDEF=gcm.def
+INCLUDEDEF=output.def
+INCLUDEDEF=config.def
+## Type de calendrier utilise
+## valeur possible: earth_360d (defaut), earth_365d, earth_366d
+calend= _AUTO_
+## Jour de l etat initial ( = 350  si 20 Decembre ,par expl. ,comme ici )
+dayref= _AUTO_
+##  Annee de l etat  initial (   avec  4  chiffres   )
+anneeref= _AUTO_
+## Nombre de jours d integration
+nday= _AUTO_
+## Remise a zero de la date initiale
+raz_date= _AUTO_
+## periode de sortie des variables de controle (en pas)
+iconser=240
+## periode d ecriture du fichier histoire (en jour)
+iecri=1
+## flag de sortie dynzon
+ok_dynzon=n
+## periode de stockage fichier dynzon (en jour)
+periodav= _AUTO_
+## activation du calcul d equilibrage de charge
+adjust= _AUTO_
+## activation du filtre fft
+use_filtre_fft=y
+## niveau d impression de controle
+prt_level=0
+###
+### Informations sur la configuration utilisee
+###
+### type_ocean = force / slab  /couple
+### type_ocean is modified automatically by the lmdz.driver 
+type_ocean=_AUTO_
+### version_ocean = nemo / opa8
+version_ocean=nemo
+### activation passage courants surface ocean-glace
+cpl_current=y
+### VEGET= y si ORCHIDEE, =n si bucket
+### VEGET is modified automatically by the lmdz.driver 
+VEGET=_AUTO_
+### Choice of tracers type_trac=lmdz/inca/repr
+### type_trac is set automatically by the lmdz.driver
+type_trac=_AUTO_
+### config_inca=aero/chem needed only if type_trac=inca
+config_inca=_AUTO_ 
+### Only concerning the program ce0l : for creating file grilles_gcm.nc
+grilles_gcm_netcdf=_AUTO_
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/traceur.def
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/traceur.def	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/PARAM/traceur.def	(revision 2180)
@@ -0,0 +1,4 @@
+3
+14 14 H2Ov
+10 10 H2Ol
+10 10 Aga
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_inca.cfg
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_inca.cfg	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_inca.cfg	(revision 2180)
@@ -0,0 +1,51 @@
+#**************************************************************
+# Author: Patrick Brockmann
+# Contact: Patrick.Brockmann@cea.fr
+# $Date: 2009/05/14 15:09:35 $
+# $Name: ATLAS_608_1_5 $
+# $Revision: 1.1.1.2 $
+# History:
+# Modification:
+#**************************************************************
+
+##################################################################################################################
+#-----------------------------------------------------------------------------------------------------------------
+#  field | files patterns | files additionnal | operations | title | units | calcul of area
+#-----------------------------------------------------------------------------------------------------------------
+#
+#   field = name of the field to monitore 
+#   files patterns = pattern of the files used to monitore the field (must be discriminant) 
+#   files additionnal = additionnal files accessible by $FER_DATA
+#   operations = operations to calculate the field 
+#   title = variable title
+#   units = variable units
+#   calcul of area = expression to use for the weight average
+#
+# Notes:
+#   - Comment lines begin by '#' character
+#   - Separator between fields is '|' character
+#   - Operations must use the ferret syntax, if several files are used precise with the syntax d=x to refer to the x dataset
+#   - files patterns, operations,title,units must be enclosed with character '"'
+#   - fields will be presented through an html page with thumbnails global, north, south, land, ocean.
+#     Use a field name with one of these pattern to display it under the corresponding thumbnail.
+#
+##################################################################################################################
+
+color=F0D5F4
+smooth=12
+#-----------------------------------------------------------------------------------------------------------------
+#  field | files patterns | files additionnal | operations | title | units | calcul of area
+#-----------------------------------------------------------------------------------------------------------------
+ OD550_AERO_global | "OD550_ASBCM OD550_ASPOMM OD550_ASSO4M OD550_CSSO4M OD550_SSSSM OD550_ASSSM OD550_CSSSM OD550_CIDUSTM OD550_AIBCM OD550_AIPOMM" | LMDZ4.0_9695_grid.nc | "(OD550_ASBCM[d=1]+ OD550_ASPOMM[d=2]+ OD550_ASSO4M[d=3]+ OD550_CSSO4M[d=4]+ OD550_SSSSM[d=5]+ OD550_ASSSM[d=6]+ OD550_CSSSM[d=7]+ OD550_CIDUSTM[d=8]+ OD550_AIBCM[d=9]+ OD550_AIPOMM[d=10])" | "total  aerosol optical depth @550nm"  |"(-)" | "aire[d=11]"
+NOX_surf_global		| "NO NO2" 	|  LMDZ4.0_9695_grid.nc | "(NO[d=1,k=19]+NO2[d=2,k=19])" | " NOX a la surface"   | "VMR" | "aire[d=3]"
+CH4_surf_global		| "CH4"    	|  LMDZ4.0_9695_grid.nc | "CH4[d=1,k=19]"                | " CH4 a la surface"   | "VMR" | "aire[d=2]"
+CO_surf_global		| "CO"     	|  LMDZ4.0_9695_grid.nc | "CO[d=1,k=19]"                 | " CO a la surface"    | "VMR" | "aire[d=2]"
+O3_surf_global		| "_O3"   	|  LMDZ4.0_9695_grid.nc | "O3[d=1,k=19]"                 | " O3 a la surface"    | "VMR" | "aire[d=2]"
+HNO3_surf_global	| "HNO3"   	|  LMDZ4.0_9695_grid.nc | "HNO3[d=1,k=19]"               | " HNO3 a la surface"  | "?" 	 | "aire[d=2]"
+NOX_545HPa_global    	| "NO NO2" 	|  LMDZ4.0_9695_grid.nc | "(NO[d=1,k=12]+NO2[d=2,k=12])" | " NOX a 545 HPa"      | "VMR" | "aire[d=3]"
+CH4_545HPa_global    	| "CH4"    	|  LMDZ4.0_9695_grid.nc | "CH4[d=1,k=12]"                | " CH4 a 545 HPa"      | "VMR" | "aire[d=2]"
+CO_545HPa_global     	| "CO"     	|  LMDZ4.0_9695_grid.nc | "CO[d=1,k=12]"                 | " CO a 545 HPa"       | "VMR" | "aire[d=2]"
+O3_545HPa_global     	| "_O3"    	|  LMDZ4.0_9695_grid.nc | "O3[d=1,k=12]"                 | " O3 a 545 HPa"       | "VMR" | "aire[d=2]"
+HNO3_545HPa_global   	| "HNO3"   	|  LMDZ4.0_9695_grid.nc | "HNO3[d=1,k=12]"               | " HNO3 a 545 HPa"     | "?"   | "aire[d=2]"
+
+#-----------------------------------------------------------------------------------------------------------------
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_lmdz.cfg
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_lmdz.cfg	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_lmdz.cfg	(revision 2180)
@@ -0,0 +1,84 @@
+#**************************************************************
+# Author: Patrick Brockmann
+# Contact: Patrick.Brockmann@cea.fr
+# $Date: 2009/05/14 15:09:35 $
+# $Name: ATLAS_608_1_5 $
+# $Revision: 1.1.1.2 $
+# History:
+# Modification:
+#**************************************************************
+
+##################################################################################################################
+#-----------------------------------------------------------------------------------------------------------------
+#  field | files patterns | files additionnal | operations | title | units | calcul of area
+#-----------------------------------------------------------------------------------------------------------------
+#
+#   field = name of the field to monitore 
+#   files patterns = pattern of the files used to monitore the field (must be discriminant) 
+#   files additionnal = additionnal files accessible by $FER_DATA
+#   operations = operations to calculate the field 
+#   title = variable title
+#   units = variable units
+#   calcul of area = expression to use for the weight average
+#
+# Notes:
+#   - Comment lines begin by # character.
+#   - Separator between fields is | character.
+#   - Operations must use the ferret syntax, if several files are used precise with the syntax d=x to refer to the x dataset.
+#     They must be enclosed by parenthesis if more than one variable is used.
+#   - files patterns,files additionnal,operations,title,units must be enclosed with character ". 
+#     Use "" if empty.
+#   - Fields will be presented through an html page with thumbnails global, north, south, land, ocean.
+#     Use a field name with one of these pattern to display it under the corresponding thumbnail.
+#
+##################################################################################################################
+
+color=AECDFF
+smooth=12
+#-----------------------------------------------------------------------------------------------------------------
+#  field | files patterns | files additionnal | operations | title | units | calcul of area
+#-----------------------------------------------------------------------------------------------------------------
+ bils_global    | "bils"                       | "" | "bils[d=1]"               | "Surf. total heat flux (GLOBAL)"         | "W/m^2"     | "aire[d=1]"   
+ nettop_global  | "tops topl"                  | "" | "(tops[d=1]-topl[d=2])"   | "TOA. total heat flux (GLOBAL)"          | "W/m^2"     | "aire[d=1]"
+ nettop0_global | "tops0 topl0"                | "" | "(tops0[d=1]-topl0[d=2])" | "TOA. total heat flux ClearSky (GLOBAL)" | "W/m^2"     | "aire[d=1]"
+ t2m_global     | "t2m"                        | "" | "(t2m[d=1]-273.15)"       | "Temperature at 2 meters (GLOBAL)"       | "degrees C" | "aire[d=1]"
+ t2m_land       | "t2m pourc_ter pourc_lic"    | "" | "(t2m[d=1]-273.15)"       | "Temperature at 2 meters (LAND)"         | "degrees C" | "aire[d=1]*((pourc_ter[d=2]+pourc_lic[d=3])/100.)"
+ tsol_global    | "tsol"                       | "" | "(tsol[d=1]-273.15)"      | "Surface Temperature (GLOBAL)"           | "degrees C" | "aire[d=1]"
+ tsol_land      | "tsol pourc_ter pourc_lic"   | "" | "(tsol[d=1]-273.15)"      | "Surface Temperature (LAND)"             | "degrees C" | "aire[d=1]*((pourc_ter[d=2]+pourc_lic[d=3])/100.)"
+ precip_global  | "precip"                     | "" | "precip[d=1]*86400"       | "Precipitation Totale liq+sol (GLOBAL)"  | "mm/d"      | "aire[d=1]"
+ precip_land    | "precip pourc_ter pourc_lic" | "" | "precip[d=1]*86400"       | "Precipitation Totale liq+sol (LAND)"    | "mm/d"      | "aire[d=1]*((pourc_ter[d=2]+pourc_lic[d=3])/100.)"
+ evap_global    | "evap"                       | "" | "evap[d=1]"               | "Evaporation (GLOBAL)"                   | "kg/(s*m2)" | "aire[d=1]"
+ evap_land      | "evap pourc_ter pourc_lic"   | "" | "evap[d=1]"               | "Evaporation (LAND)"                     | "kg/(s*m2)" | "aire[d=1]*((pourc_ter[d=2]+pourc_lic[d=3])/100.)"
+ flat_global    | "lat_ter pourc_ter lat_sic pourc_sic lat_lic pourc_lic lat_oce pourc_oce" | "" | "(lat_ter[d=1]*pourc_ter[d=2]+lat_sic[d=3]*pourc_sic[d=4]+lat_lic[d=5]*pourc_lic[d=6]+lat_oce[d=7]*pourc_oce[d=8])" | "Latent Heat Flux (GLOBAL)"      | "W/m^2" | "aire[d=1]"
+ od550aer_forcing       | "od550aer"              | "" | "od550aer[d=1]"           | "Total aerosol optical depth at 550nm"   | "-"         | "aire[d=1]"   
+ od550lt1aer_forcing    | "od550lt1aer"           | "" | "od550lt1aer[d=1]"        | "Fine mode optical depth"                | "-"         | "aire[d=1]"   
+ absvisaer_forcing      | "absvisaer"             | "" | "absvisaer[d=1]"          | "Absorption aerosol visible optical depth" | "-"       | "aire[d=1]"   
+ swtoaas_ant_forcing    | "swtoaas_ant"           | "" | "swtoaas_ant[d=1]"        | "Anthropogenic aerosol radiative forcing all-sky at TOA"         | "W/m^2"   | "aire[d=1]"   
+ swtoacs_ant_forcing    | "swtoacs_ant"           | "" | "swtoacs_ant[d=1]"        | "Anthropogenic aerosol radiative forcing clear-sky at TOA"       | "W/m^2"   | "aire[d=1]" 
+ swtoacf_ant_forcing    | "swtoacf_ant"           | "" | "swtoacf_ant[d=1]"        | "Anthropogenic aerosol impact on cloud radiative forcing at TOA" | "W/m^2"   | "aire[d=1]" 
+ swsrfas_ant_forcing    | "swsrfas_ant"           | "" | "swsrfas_ant[d=1]"        | "Anthropogenic aerosol radiative forcing all-sky at SRF"         | "W/m^2"   | "aire[d=1]"  
+ swsrfcs_ant_forcing    | "swsrfcs_ant"           | "" | "swsrfcs_ant[d=1]"        | "Anthropogenic aerosol radiative forcing clear-sky at SRF"       | "W/m^2"   | "aire[d=1]" 
+ swsrfcf_ant_forcing    | "swsrfcf_ant"           | "" | "swsrfcf_ant[d=1]"        | "Anthropogenic aerosol impact on cloud radiative forcing at SRF" | "W/m^2"   | "aire[d=1]"
+ swtoaas_nat_forcing    | "swtoaas_nat"           | "" | "swtoaas_nat[d=1]"        | "Natural aerosol radiative forcing all-sky at TOA"               | "W/m^2"   | "aire[d=1]"   
+ swtoacs_nat_forcing    | "swtoacs_nat"           | "" | "swtoacs_nat[d=1]"        | "Natural aerosol radiative forcing clear-sky at TOA"             | "W/m^2"   | "aire[d=1]" 
+ swtoacf_nat_forcing    | "swtoacf_nat"           | "" | "swtoacf_nat[d=1]"        | "Natural aerosol impact on cloud radiative forcing at TOA"       | "W/m^2"   | "aire[d=1]" 
+ swsrfas_nat_forcing    | "swsrfas_nat"           | "" | "swsrfas_nat[d=1]"        | "Natural aerosol radiative forcing all-sky at SRF"               | "W/m^2"   | "aire[d=1]"  
+ swsrfcs_nat_forcing    | "swsrfcs_nat"           | "" | "swsrfcs_nat[d=1]"        | "Natural aerosol radiative forcing clear-sky at SRF"             | "W/m^2"   | "aire[d=1]" 
+ swsrfcf_nat_forcing    | "swsrfcf_nat"           | "" | "swsrfcf_nat[d=1]"        | "Natural aerosol impact on cloud radiative forcing at SRF"       | "W/m^2"   | "aire[d=1]"
+ topswai_forcing        | "topswai"               | "" | "topswai[d=1]"            | "AIE at TOA"                             | "W/m^2" | "aire[d=1]"
+ solswai_forcing        | "solswai"               | "" | "solswai[d=1]"            | "AIE at SRF"                             | "W/m^2" | "aire[d=1]"
+ swtoacf_zero_forcing   | "swtoacf_zero"          | "" | "swtoacf_zero[d=1]"       | "Cloud radiative forcing (allsky-clearsky fluxes) at TOA" | "W/m^2" | "aire[d=1]"
+ swsrfcf_zero_forcing   | "swsrfcf_zero"          | "" | "swsrfcf_zero[d=1]"       | "Cloud radiative forcing (allsky-clearsky fluxes) at SRF" | "W/m^2" | "aire[d=1]"
+ tro3_strato_forcing    | "tro3"                  | "" | "tro3[x=@din,y=@din,k=1:7@sum,d=1]"  | "ozone strato k=1:7@sum" | "Mole" | ""
+ tro3_tropo_forcing     | "tro3"                  | "" | "tro3[x=@din,y=@din,k=8:17@sum,d=1]" | "ozone trop k=8:17@sum"  | "Mole" | ""
+ solaire_forcing        | "solaire"               | "" | "solaire[d=1]"   | "Constante solaire"      | "W/m^2" | "1"
+ co2_ppm_forcing        | "co2_ppm"               | "" | "co2_ppm[d=1]"   | "Concentration du CO2"   | "ppm"   | "1"
+ CH4_ppb_forcing        | "CH4_ppb"               | "" | "CH4_ppb[d=1]"   | "Concentration du CH4"   | "ppb"   | "1"
+ N2O_ppb_forcing        | "N2O_ppb"               | "" | "N2O_ppb[d=1]"   | "Concentration du N2O"   | "ppb"   | "1"
+ CFC11_ppt_forcing      | "CFC11_ppt"             | "" | "CFC11_ppt[d=1]" | "Concentration du CFC11" | "ppt"   | "1"
+ CFC12_ppt_forcing      | "CFC12_ppt"             | "" | "CFC12_ppt[d=1]" | "Concentration du CFC12" | "ppt"   | "1"
+## R_ecc_forcing      | "R_ecc"                  | "" | "R_ecc[d=1]"   | "Excentricite"      | "-"     | "1"
+## R_peri_forcing     | "R_peri"                 | "" | "R_peri[d=1]"  | "Equinoxe"          | "-"     | "1"
+## R_incl_forcing     | "R_incl"                 | "" | "R_incl[d=1]"  | "Inclinaison"       | "deg"   | "1"
+#-----------------------------------------------------------------------------------------------------------------
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_orchidee.cfg
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_orchidee.cfg	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_orchidee.cfg	(revision 2180)
@@ -0,0 +1,48 @@
+#**************************************************************
+# Author: Patrick Brockmann
+# Contact: Patrick.Brockmann@cea.fr
+# $Date: 2009/05/14 15:09:35 $
+# $Name: ATLAS_608_1_5 $
+# $Revision: 1.1.1.2 $
+# History:
+# Modification:
+#**************************************************************
+
+##################################################################################################################
+#-----------------------------------------------------------------------------------------------------------------
+#  field | files patterns | files additionnal | operations | title | units | calcul of area
+#-----------------------------------------------------------------------------------------------------------------
+#
+#   field = name of the field to monitore 
+#   files patterns = pattern of the files used to monitore the field (must be discriminant) 
+#   files additionnal = additionnal files accessible by $FER_DATA
+#   operations = operations to calculate the field 
+#   title = variable title
+#   units = variable units
+#   calcul of area = expression to use for the weight average
+#
+# Notes:
+#   - Comment lines begin by # character.
+#   - Separator between fields is | character.
+#   - Operations must use the ferret syntax, if several files are used precise with the syntax d=x to refer to the x dataset.
+#     They must be enclosed by parenthesis if more than one variable is used.
+#   - files patterns,files additionnal,operations,title,units must be enclosed with character ". 
+#     Use "" if empty.
+#   - Fields will be presented through an html page with thumbnails global, north, south, land, ocean.
+#     Use a field name with one of these pattern to display it under the corresponding thumbnail.
+#
+##################################################################################################################
+
+color=E7FFAB
+smooth=12
+#------------------------------------------------------------------------------------------------------------------------------------------------------
+#  field | files patterns | files additionnal | operations | title | units | calcul of area
+#------------------------------------------------------------------------------------------------------------------------------------------------------
+temp_sol_lands | "temp_sol"         |  ""              | "temp_sol[d=1]"                    | "TSOL (LANDS)"                 | "K/d"    | "Areas[d=1]*Contfrac[d=1]"
+humidity_lands | "bqsb gqsb"        |  ""              | "(bqsb[d=1]+gqsb[d=2])"            | "Total Soil Moisture  (LANDS)" | "1"      | "Areas[d=1]*Contfrac[d=1]"
+albedo_lands   | "alb_vis alb_nir"  |  ""              | "((alb_vis[d=1]+alb_nir[d=2])*0.5)"| "Mean Albedo (LANDS)"          | "1"      | "Areas[d=1]*Contfrac[d=1]"
+snow_lands     | "snow"             |  ""              | "snow[d=1]"                        | "Snow Mass (LANDS)"            | "kg/m^2" | "Areas[d=1]*Contfrac[d=1]"
+maxveget_lands | "maxvegetfrac"     |  ""              | "maxvegetfrac[d=1,K=12:13]"        | "vegetmax[pft=12,13] (LANDS)"  | "1"      | "2"
+nee_lands      | "nee maxvegetfrac" |  ""              | "(nee[d=1]*365*86400*maxvegetfrac[d=2]*Areas[d=1]*Contfrac[d=1]/1e15)"  | "Net Ecosystem Exchange"    | "PgC/yr" | "2"
+maxveget_forcing | "maxvegetfrac"   |  ""              | "((maxvegetfrac[d=1,K=12]+maxvegetfrac[d=1,K=13])*Areas[d=1]*Contfrac[d=1]/1e12)" | "maxveget surface[pft=12,13] "  | "Mkm^2"  | "2"
+#------------------------------------------------------------------------------------------------------------------------------------------------------
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_stomate.cfg
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_stomate.cfg	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/GENERAL/POST/monitoring01_stomate.cfg	(revision 2180)
@@ -0,0 +1,51 @@
+#**************************************************************
+# Author: Patrick Brockmann
+# Contact: Patrick.Brockmann@cea.fr
+# $Date: 2009/05/14 15:09:35 $
+# $Name: ATLAS_608_1_5 $
+# $Revision: 1.1.1.2 $
+# History:
+# Modification:
+#**************************************************************
+
+##################################################################################################################
+#-----------------------------------------------------------------------------------------------------------------
+#  field | files patterns | files additionnal | operations | title | units | calcul of area
+#-----------------------------------------------------------------------------------------------------------------
+#
+#   field = name of the field to monitore 
+#   files patterns = pattern of the files used to monitore the field (must be discriminant) 
+#   files additionnal = additionnal files accessible by $FER_DATA
+#   operations = operations to calculate the field 
+#   title = variable title
+#   units = variable units
+#   calcul of area = expression to use for the weight average
+#
+# Notes:
+#   - Comment lines begin by # character.
+#   - Separator between fields is | character.
+#   - Operations must use the ferret syntax, if several files are used precise with the syntax d=x to refer to the x dataset.
+#     They must be enclosed by parenthesis if more than one variable is used.
+#   - files patterns,files additionnal,operations,title,units must be enclosed with character ". 
+#     Use "" if empty.
+#   - Fields will be presented through an html page with thumbnails global, north, south, land, ocean.
+#     Use a field name with one of these pattern to display it under the corresponding thumbnail.
+#
+##################################################################################################################
+
+color=EEE8AA
+smooth=12
+#------------------------------------------------------------------------------------------------------------------------------------------------------
+#  field | files patterns | files additionnal | operations | title | units | calcul of area
+#------------------------------------------------------------------------------------------------------------------------------------------------------
+fLuc_fHarvest_lands | "CONVFLUX CFLUX_PROD10 CFLUX_PROD100 HARVEST_ABOVE CONTFRAC"  | "" | "((CONVFLUX[d=1]+CFLUX_PROD10[d=2]+CFLUX_PROD100[d=3]+HARVEST_ABOVE[d=4])*AREAS[d=1]*CONTFRAC[d=5]*365/1e15)"                           | "CO2 flux from Land Use Change and Crop Harvesting"            | "PgC/yr" | "2"
+fHarvest_lands      | "HARVEST_ABOVE CONTFRAC"             | "" | "((HARVEST_ABOVE[d=1])*AREAS[d=1]*CONTFRAC[d=2]*365/1e15)"                           | "CO2 flux from Land Use Change and Crop Harvesting"            | "PgC/yr" | "2"
+nbp_lands           | "nbp"                                | "" | "(nbp[d=1]*Areas[d=1]*86400*365/1e12)"             | "Net Biospheric Production"       | "PgC/yr" | "2"
+cSoil_lands         | "TOTAL_SOIL_CARB VEGET_MAX CONTFRAC" | "" | "(TOTAL_SOIL_CARB[d=1]*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=3]/1e15)"     | "Carbon Soil in Pool"                                   | "PgC"    | "2"
+cVeg_lands          | "TOTAL_M VEGET_MAX CONTFRAC"         | "" | "(TOTAL_M[d=1]*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=3]/1e15)"             | "Carbon in vegetation"                                       | "PgC"    | "2"
+npp_lands           | "NPP VEGET_MAX CONTFRAC"             | "" | "(NPP[d=1]*365*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=3]/1e15)"             | "Net Primary Production"                                  | "PgC/yr" | "2"
+rh_lands            | "HET_RESP VEGET_MAX CONTFRAC"        | "" | "(HET_RESP[d=1]*365*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=3]/1e15)"        | "Heterotrophic Respiration"                                     | "PgC/yr" | "2"
+fFire_lands         | "CO2_FIRE VEGET_MAX CONTFRAC"        | "" | "(CO2_FIRE[d=1]*365*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=3]/1e15)"        | "CO2 emission from fire"                                     | "PgC/yr" | "2"
+#------------------------------------------------------------------------------------------------------------------------------------------------------
+
+
Index: CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/README
===================================================================
--- CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/README	(revision 2180)
+++ CONFIG/UNIFORM/v5_dev/LMDZORINCA_v5/HELIUM/LMDZORINCA_v5/README	(revision 2180)
@@ -0,0 +1,13 @@
+How to create a job and run directory :
+
+Choose in EXPERIMENTS the experiment to be done and copy the corresponding config.card to modipsl/config/LMDZORINCA_v5/, beside this README file. Modify the config.card as usual, for at least the JobName. Apply ../../util/ins_job and the creation of a new run directory will be done :
+  - the run directory will be created with the same name as JobName in config.card. If a directory with the same name already exists, nothing will be done.
+  - the PARAM, DRIVER and POST directories from GENERAL/ will be copied into the new run directory.
+  - the COMP directory from EXPERIMENTS/ will be copied into the new run directory, according to the variable ExpType in config.card.
+  - the config.card will be moved into the run directory.
+  - a job will be created in the run directory.
+
+Once the run directory has been created with ins_job, this directory is used as a normal run directory. More run directories can be created using ins_job several times. ins_job will never write in an existing run directory.
+
+
+For details see http://forge.ipsl.jussieu.fr/igcmg/wiki/Modipsl_exec
