| 1 | #!/bin/bash |
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| 2 | |
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| 3 | |
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| 4 | listToProcessFile="${1}" |
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| 5 | |
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| 6 | |
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| 7 | |
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| 8 | switchtotar=0 # gpdebug : a modifier --> s'occuper des options du script orig enlarge.sh |
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| 9 | maxtries=3 |
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| 10 | |
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| 11 | # On renseigne les variables d'environnement |
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| 12 | . load_ipslPack_env.sh |
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| 13 | |
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| 14 | dirin=$INPUT_DMF_DATA |
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| 15 | dirout=$OUTPUT_STORE |
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| 16 | dirout_work=$OUTPUT_WORK |
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| 17 | |
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| 18 | export JOB_DIR=${LS_SUBCWD:-${PWD}} |
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| 19 | export EXE_DIR=${JOB_DIR} |
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| 20 | source ${EXE_DIR}/DEM_utilities.sh |
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| 21 | #------------------------------------------------------ |
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| 22 | |
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| 23 | baseNameOfListFile=$( basename $listToProcessFile ) |
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| 24 | dirPathOfListFile=$( dirname $listToProcessFile ) |
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| 25 | dirnameOfListFile=$( basename $dirPathOfListFile ) |
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| 26 | |
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| 27 | echo "dirnameOfListFile ==> $dirnameOfListFile" |
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| 28 | |
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| 29 | |
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| 30 | if ( \ |
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| 31 | [ $dirnameOfListFile != "output_ncrcat" ] && \ |
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| 32 | [ $dirnameOfListFile != "output_tar" ] && \ |
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| 33 | [ $dirnameOfListFile != "restart_tar" ] && \ |
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| 34 | [ $dirnameOfListFile != "store_cp" ] && \ |
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| 35 | [ $dirnameOfListFile != "work_cp" ] && \ |
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| 36 | [ $dirnameOfListFile != "debug_tar" ] && \ |
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| 37 | [ $dirnameOfListFile != "other_tar" ] \ |
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| 38 | ) \ |
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| 39 | && \ |
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| 40 | [ $baseNameOfListFile != "tar_full_simul.list" ] |
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| 41 | then |
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| 42 | echo "probleme : le rep du fichier liste est mauvais." # gpdebug : a modifier |
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| 43 | exit 1 |
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| 44 | fi |
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| 45 | |
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| 46 | |
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| 47 | function find_varstoexclude { |
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| 48 | nbfile=0 |
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| 49 | for file in `cat $1` ; do |
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| 50 | # ncdump -h ${file} | gawk '{if (match($0, /(byte|char|short|int|float|double) (.*)\(/, arr)) print arr[2] }' >> tmp_$$.txt |
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| 51 | ncdump -h ${file} | grep -Ew "byte|char|short|int|float|double" | awk -F\( '{split($1,a," ") ; split($2,b,")") ; if (a[2] != b[1]) print a[2]}' >> tmp_$$.txt |
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| 52 | let nbfile=nbfile+1 |
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| 53 | done |
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| 54 | |
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| 55 | varstoexclude=`cat tmp_$$.txt | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 != nbfile) {print $2}}' | paste -s -d','` |
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| 56 | varstoexcludefiltered=`cat tmp_$$.txt | sort | uniq -c | awk -v nbfile=$nbfile '{if (($1 != nbfile) && !(match($2, /t_inst_(.*)/))) {print $2}}' | paste -s -d','` |
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| 57 | nbvars=`echo $varstoexcludefiltered | gawk -F',' '{print NF}'` |
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| 58 | |
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| 59 | rm -f tmp_$$.txt |
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| 60 | |
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| 61 | return 0 |
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| 62 | } |
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| 63 | |
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| 64 | # gpdebug : pour test showPackProgress.sh ************************* |
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| 65 | export RANDOM=$$ |
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| 66 | |
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| 67 | function gives_0_or_1 |
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| 68 | { |
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| 69 | bit=-1 |
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| 70 | let "bit = RANDOM % 2" |
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| 71 | echo $bit |
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| 72 | } |
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| 73 | |
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| 74 | resultCmd= |
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| 75 | # gpdebug : ****************************** fin ******************** |
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| 76 | |
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| 77 | |
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| 78 | |
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| 79 | |
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| 80 | # rep de simu : celui contenant le rep qui contient la liste |
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| 81 | PATH_SIMU=$( dirname $dirPathOfListFile ) |
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| 82 | set=$listToProcessFile |
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| 83 | |
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| 84 | |
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| 85 | if [ "$dirnameOfListFile" == "output_ncrcat" ] |
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| 86 | then |
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| 87 | #----------------------------------- |
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| 88 | echo "#-------------------" |
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| 89 | echo "Set: $set" |
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| 90 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
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| 91 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 92 | statusfile=${set%%.list}.status |
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| 93 | logfile=${set%%.list}_${datestr}.log |
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| 94 | |
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| 95 | # echo "output_ncrcat : blabla 0" |
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| 96 | |
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| 97 | #----------------------------------- |
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| 98 | # Create status file if not exists |
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| 99 | if [ ! -e $statusfile ] ; then |
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| 100 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
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| 101 | fi |
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| 102 | # echo "output_ncrcat : blabla 1" |
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| 103 | #----------------------------------- |
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| 104 | # Switch to tar command |
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| 105 | if [ $switchtotar -eq 1 ] ; then |
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| 106 | echo "====> DELEGATE to tar command with option --switchtotar" |
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| 107 | echo "DELEGATE to tar command with option --switchtotar" >> $statusfile |
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| 108 | mv $set $PATH_SIMU/output_tar |
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| 109 | exit 0 |
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| 110 | fi |
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| 111 | # echo "output_ncrcat : blabla 2" |
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| 112 | #----------------------------------- |
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| 113 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
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| 114 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
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| 115 | printf "====> " |
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| 116 | tail -1 $statusfile |
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| 117 | exit 0 # gpdebug : modif |
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| 118 | fi |
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| 119 | |
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| 120 | # echo "output_ncrcat : blabla 3" |
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| 121 | |
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| 122 | #----------------------------------- |
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| 123 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
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| 124 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
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| 125 | echo "Nb of tries: $nbtries" |
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| 126 | |
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| 127 | #----------------------------------- |
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| 128 | # Set output file name from list name |
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| 129 | |
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| 130 | fileout1=$( basename $set ) |
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| 131 | fileout=${fileout1%.list} |
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| 132 | |
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| 133 | filefirst=`head -n 1 $set` |
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| 134 | diroutputfile=`dirname $filefirst | sed -e "s%$dirin%$dirout%"` |
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| 135 | |
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| 136 | outputfile=$diroutputfile/${fileout} |
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| 137 | mkdir -p $diroutputfile |
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| 138 | echo "Output file to write: $outputfile output_ncrcat" |
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| 139 | |
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| 140 | #----------------------------------- |
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| 141 | # Find variables to exclude to have homogeneous files (always exclude 't_inst_.*') |
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| 142 | extratar=0 |
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| 143 | find_varstoexclude $set |
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| 144 | if [ $nbvars -eq 0 ] ; then |
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| 145 | varstoexclude="t_inst_.*" |
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| 146 | else |
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| 147 | # There are others variables than 't_inst_.*' so an extra tar file will be created |
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| 148 | varstoexclude="t_inst_.*,$varstoexcludefiltered" |
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| 149 | extratar=1 |
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| 150 | # Copy to output_tar directory |
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| 151 | echo "====> COPY to tar command because find other variables ($varstoexcludefiltered) than t_inst_*" |
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| 152 | echo "COPY to tar command because find other variables ($varstoexcludefiltered) than t_inst_*" >> $statusfile |
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| 153 | cp $set $PATH_SIMU/output_tar |
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| 154 | fi |
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| 155 | |
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| 156 | #----------------------------------- |
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| 157 | # Try 2 times before fire "FAILED" |
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| 158 | ncrcatcmd=ncrcat |
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| 159 | ncrcatoptions="--md5_digest" |
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| 160 | # ncrcatoptions="" |
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| 161 | |
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| 162 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
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| 163 | resCmd=0 |
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| 164 | cat $set | $ncrcatcmd $ncrcatoptions -O -x -v $varstoexclude -o $outputfile > $logfile 2>&1 # gpdebug : a retablir |
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| 165 | resCmd=$? |
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| 166 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
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| 167 | |
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| 168 | # resultCmd=$( gives_0_or_1 ) |
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| 169 | # resultCmd=1 |
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| 170 | # if [ $resultCmd -eq 0 ] ; then |
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| 171 | if [ $resCmd -eq 0 ] ; then |
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| 172 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
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| 173 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 174 | echo "DONE ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
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| 175 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 2)" |
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| 176 | echo "COMPLETED at try #$nbtries (at 1st shot on 2)" >> $statusfile |
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| 177 | else |
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| 178 | # Add --md5_digest |
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| 179 | rm -f $outputfile*ncrcat.tmp |
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| 180 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
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| 181 | resCmd=0 |
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| 182 | cat $set | $ncrcatcmd $ncrcatoptions -O -x -v $varstoexclude -o $outputfile > $logfile 2>&1 # gpdebug : a retablir |
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| 183 | resCmd=$? |
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| 184 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
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| 185 | # resultCmd=$( gives_0_or_1 ) |
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| 186 | # resultCmd=1 |
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| 187 | # if [ $resultCmd -eq 0 ] ; then |
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| 188 | if [ $resCmd -eq 0 ] ; then |
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| 189 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
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| 190 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 191 | echo "DONE ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
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| 192 | echo "====> COMPLETED at try #$nbtries (at 2nd shot on 2)" |
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| 193 | echo "COMPLETED at try #$nbtries (at 2nd shot on 2)" >> $statusfile |
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| 194 | else |
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| 195 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 196 | rm -f $outputfile*ncrcat.tmp |
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| 197 | echo "====> FAILED at try #$nbtries" |
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| 198 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
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| 199 | if [ $nbtries -ge $maxtries ] ; then |
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| 200 | echo "====> DELEGATE to tar command after $nbtries tries (maxtries=$maxtries)" |
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| 201 | echo "DELEGATE to tar command after $nbtries tries (maxtries=$maxtries)" >> $statusfile |
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| 202 | cp $set $PATH_SIMU/output_tar # gpdebug : a retablir |
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| 203 | fi |
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| 204 | exit 1 |
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| 205 | fi |
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| 206 | fi |
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| 207 | |
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| 208 | |
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| 209 | |
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| 210 | fi |
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| 211 | |
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| 212 | |
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| 213 | #------------------------------------------------------ |
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| 214 | if [ "$dirnameOfListFile" == "output_tar" ] |
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| 215 | then |
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| 216 | |
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| 217 | #----------------------------------- |
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| 218 | echo "#-------------------" |
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| 219 | echo "Set: $set" |
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| 220 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
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| 221 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 222 | statusfile=${set%%.list}.status |
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| 223 | logfile=${set%%.list}_${datestr}.log |
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| 224 | |
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| 225 | #----------------------------------- |
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| 226 | # Create status file if not exists |
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| 227 | if [ ! -e $statusfile ] ; then |
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| 228 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
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| 229 | fi |
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| 230 | |
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| 231 | #----------------------------------- |
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| 232 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
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| 233 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
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| 234 | printf "====> " |
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| 235 | tail -1 $statusfile |
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| 236 | exit 0 |
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| 237 | fi |
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| 238 | |
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| 239 | #----------------------------------- |
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| 240 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
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| 241 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
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| 242 | # echo "Nb of tries: $nbtries" |
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| 243 | |
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| 244 | #----------------------------------- |
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| 245 | # Set output file name from list name |
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| 246 | |
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| 247 | fileout1=$( basename $set ) |
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| 248 | fileout=${fileout1%.list}.tar |
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| 249 | |
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| 250 | filefirst=`head -n 1 $set` |
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| 251 | dirinputfile=`dirname $filefirst` |
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| 252 | diroutputfile=`dirname $filefirst | sed -e "s%$dirin%$dirout%"` |
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| 253 | |
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| 254 | outputfile=$diroutputfile/${fileout} |
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| 255 | mkdir -p $diroutputfile |
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| 256 | echo "Output file to write: $outputfile output_tar" |
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| 257 | |
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| 258 | #----------------------------------- |
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| 259 | # Try 1 time before fire "FAILED" |
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| 260 | # Waiting for CCRT command |
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| 261 | tarcmd=tar |
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| 262 | taroptions="--format=posix -W -cf" |
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| 263 | |
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| 264 | cd $dirinputfile |
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| 265 | |
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| 266 | set_local=$set".local" |
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| 267 | for file in $( cat $set) ; do |
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| 268 | basename $file >> $set".local" |
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| 269 | done |
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| 270 | |
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| 271 | # #----------------------------------- |
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| 272 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
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| 273 | resCmd=0 |
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| 274 | $tarcmd $taroptions $outputfile --dereference --files-from $set.local > $logfile 2>&1 # gpdebug : a retablir |
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| 275 | resCmd=$? |
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| 276 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
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| 277 | |
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| 278 | # resultCmd=$( gives_0_or_1 ) |
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| 279 | # if [ $resultCmd -eq 0 ] ; then |
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| 280 | if [ $resCmd -eq 0 ] ; then |
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| 281 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
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| 282 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 283 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
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| 284 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
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| 285 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
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| 286 | else |
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| 287 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 288 | echo "====> FAILED at try #$nbtries" |
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| 289 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
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| 290 | exit 1 |
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| 291 | fi |
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| 292 | rm -f $set".local" |
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| 293 | #----------------------------------- |
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| 294 | |
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| 295 | fi |
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| 296 | |
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| 297 | |
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| 298 | #------------------------------------------------------ |
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| 299 | if [ "$dirnameOfListFile" == "restart_tar" ] |
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| 300 | then |
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| 301 | #----------------------------------- |
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| 302 | echo "#-------------------" |
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| 303 | echo "Set: $set" |
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| 304 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
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| 305 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 306 | statusfile=${set%%.list}.status |
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| 307 | logfile=${set%%.list}_${datestr}.log |
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| 308 | |
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| 309 | #----------------------------------- |
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| 310 | # Create status file if not exists |
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| 311 | if [ ! -e $statusfile ] ; then |
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| 312 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
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| 313 | fi |
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| 314 | |
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| 315 | #----------------------------------- |
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| 316 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
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| 317 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
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| 318 | printf "====> " |
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| 319 | tail -1 $statusfile |
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| 320 | exit 0 |
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| 321 | fi |
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| 322 | |
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| 323 | #----------------------------------- |
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| 324 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
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| 325 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
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| 326 | # echo "Nb of tries: $nbtries" |
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| 327 | |
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| 328 | #----------------------------------- |
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| 329 | # Set output file name from list name |
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| 330 | dirin1=$PATH_SIMU/RESTART |
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| 331 | dirin2=${dirin1##${IGCM_DEM}} |
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| 332 | dirin3=${dirin2##/$( basename ${INPUT_DMF_DATA} )} |
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| 333 | diroutputfile=${OUTPUT_STORE}${dirin3} |
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| 334 | fileout1=$( basename $set ) |
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| 335 | fileout=${fileout1%.list}.tar |
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| 336 | outputfile=$diroutputfile/${fileout} |
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| 337 | mkdir -p $diroutputfile |
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| 338 | echo "Output file to write: $outputfile restart_tar" |
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| 339 | |
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| 340 | #----------------------------------- |
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| 341 | # Try 1 time before fire "FAILED" |
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| 342 | # Waiting for CCRT command |
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| 343 | tarcmd=tar |
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| 344 | taroptions="--format=posix -W -cf" |
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| 345 | |
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| 346 | cd $dirin1 |
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| 347 | # ls |
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| 348 | |
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| 349 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
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| 350 | resCmd=0 |
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| 351 | $tarcmd $taroptions $outputfile --dereference --files-from $set > $logfile 2>&1 # gpdebug : a retablir |
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| 352 | resCmd=$? |
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| 353 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
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| 354 | |
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| 355 | # resultCmd=$( gives_0_or_1 ) |
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| 356 | # if [ $resultCmd -eq 0 ] ; then |
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| 357 | if [ $resCmd -eq 0 ] ; then |
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| 358 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
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| 359 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 360 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
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| 361 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
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| 362 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
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| 363 | else |
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| 364 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 365 | echo "====> FAILED at try #$nbtries" |
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| 366 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
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| 367 | exit 1 |
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| 368 | fi |
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| 369 | |
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| 370 | #----------------------------------- |
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| 371 | |
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| 372 | fi |
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| 373 | |
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| 374 | #------------------------------------------------------ |
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| 375 | if [ "$dirnameOfListFile" == "debug_tar" ] |
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| 376 | then |
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| 377 | |
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| 378 | #----------------------------------- |
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| 379 | echo "#-------------------" |
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| 380 | echo "Set: $set" |
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| 381 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
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| 382 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 383 | statusfile=${set%%.list}.status |
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| 384 | logfile=${set%%.list}_${datestr}.log |
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| 385 | |
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| 386 | #----------------------------------- |
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| 387 | # Create status file if not exists |
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| 388 | if [ ! -e $statusfile ] ; then |
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| 389 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
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| 390 | fi |
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| 391 | |
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| 392 | #----------------------------------- |
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| 393 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
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| 394 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
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| 395 | printf "====> " |
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| 396 | tail -1 $statusfile |
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| 397 | exit 0 |
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| 398 | fi |
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| 399 | |
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| 400 | #----------------------------------- |
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| 401 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
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| 402 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
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| 403 | # echo "Nb of tries: $nbtries" |
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| 404 | |
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| 405 | #----------------------------------- |
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| 406 | # Set output file name from list name |
|---|
| 407 | dirin1=$PATH_SIMU/DEBUG |
|---|
| 408 | dirin2=${dirin1##${IGCM_DEM}} |
|---|
| 409 | dirin3=${dirin2##/$( basename ${INPUT_DMF_DATA} )} |
|---|
| 410 | diroutputfile=${OUTPUT_STORE}${dirin3} |
|---|
| 411 | fileout1=$( basename $set ) |
|---|
| 412 | fileout=${fileout1%.list}.tar |
|---|
| 413 | outputfile=$diroutputfile/${fileout} |
|---|
| 414 | mkdir -p $diroutputfile |
|---|
| 415 | echo "Output file to write: $outputfile debug_tar" |
|---|
| 416 | |
|---|
| 417 | #----------------------------------- |
|---|
| 418 | # Try 1 time before fire "FAILED" |
|---|
| 419 | # Waiting for CCRT command |
|---|
| 420 | tarcmd=tar |
|---|
| 421 | taroptions="--format=posix -W -cf" |
|---|
| 422 | |
|---|
| 423 | cd $dirin1 |
|---|
| 424 | # ls |
|---|
| 425 | resCmd=0 |
|---|
| 426 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 427 | $tarcmd $taroptions $outputfile --dereference --files-from $set > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 428 | resCmd=$? |
|---|
| 429 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 430 | |
|---|
| 431 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 432 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 433 | if [ $resCmd -eq 0 ] ; then |
|---|
| 434 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 435 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 436 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
|---|
| 437 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 438 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 439 | else |
|---|
| 440 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 441 | echo "====> FAILED at try #$nbtries" |
|---|
| 442 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
|---|
| 443 | exit 1 |
|---|
| 444 | fi |
|---|
| 445 | |
|---|
| 446 | #----------------------------------- |
|---|
| 447 | |
|---|
| 448 | fi |
|---|
| 449 | |
|---|
| 450 | #------------------------------------------------------ |
|---|
| 451 | if [ "$dirnameOfListFile" == "store_cp" ] |
|---|
| 452 | then |
|---|
| 453 | #----------------------------------- |
|---|
| 454 | echo "#-------------------" |
|---|
| 455 | echo "Set: $set" |
|---|
| 456 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 457 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 458 | statusfile=${set%%.list}.status |
|---|
| 459 | logfile=${set%%.list}_${datestr}.log |
|---|
| 460 | |
|---|
| 461 | #----------------------------------- |
|---|
| 462 | # Create status file if not exists |
|---|
| 463 | if [ ! -e $statusfile ] ; then |
|---|
| 464 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 465 | fi |
|---|
| 466 | |
|---|
| 467 | #----------------------------------- |
|---|
| 468 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 469 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 470 | printf "====> " |
|---|
| 471 | tail -1 $statusfile |
|---|
| 472 | exit 0 |
|---|
| 473 | fi |
|---|
| 474 | |
|---|
| 475 | #----------------------------------- |
|---|
| 476 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 477 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 478 | # echo "Nb of tries: $nbtries" |
|---|
| 479 | |
|---|
| 480 | meantime=0 |
|---|
| 481 | resCmd=0 |
|---|
| 482 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 483 | #----------------------------------- |
|---|
| 484 | # Set output file name from first and last files from the current set |
|---|
| 485 | for file in $( cat $set) ; do |
|---|
| 486 | |
|---|
| 487 | diroutputfile=`dirname $file | sed -e "s%$dirin%$dirout%"` |
|---|
| 488 | mkdir -p $diroutputfile |
|---|
| 489 | echo "Output file to write: $diroutputfile/$( basename $file ) store_cp" |
|---|
| 490 | |
|---|
| 491 | #----------------------------------- |
|---|
| 492 | # Try 1 time before fire "FAILED" |
|---|
| 493 | # Waiting for CCRT command |
|---|
| 494 | cpcmd="cp " |
|---|
| 495 | cpoptions="-rf" |
|---|
| 496 | $cpcmd $cpoptions $file $diroutputfile > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 497 | resCmd=$(( $resCmd || $? )) |
|---|
| 498 | done |
|---|
| 499 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 500 | |
|---|
| 501 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 502 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 503 | if [ $resCmd -eq 0 ] ; then |
|---|
| 504 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 505 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 506 | echo "DONE ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
|---|
| 507 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 508 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 509 | else |
|---|
| 510 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 511 | echo "====> FAILED at try #$nbtries" |
|---|
| 512 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
|---|
| 513 | exit 1 |
|---|
| 514 | fi |
|---|
| 515 | |
|---|
| 516 | #----------------------------------- |
|---|
| 517 | |
|---|
| 518 | fi |
|---|
| 519 | |
|---|
| 520 | #------------------------------------------------------ |
|---|
| 521 | if [ "$dirnameOfListFile" == "work_cp" ] |
|---|
| 522 | then |
|---|
| 523 | #----------------------------------- |
|---|
| 524 | echo "#-------------------" |
|---|
| 525 | echo "Set: $set" |
|---|
| 526 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 527 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 528 | statusfile=${set%%.list}.status |
|---|
| 529 | logfile=${set%%.list}_${datestr}.log |
|---|
| 530 | |
|---|
| 531 | #----------------------------------- |
|---|
| 532 | # Create status file if not exists |
|---|
| 533 | if [ ! -e $statusfile ] ; then |
|---|
| 534 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 535 | fi |
|---|
| 536 | |
|---|
| 537 | #----------------------------------- |
|---|
| 538 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 539 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 540 | printf "====> " |
|---|
| 541 | tail -1 $statusfile |
|---|
| 542 | exit 0 |
|---|
| 543 | fi |
|---|
| 544 | |
|---|
| 545 | #----------------------------------- |
|---|
| 546 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 547 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 548 | # echo "Nb of tries: $nbtries" |
|---|
| 549 | |
|---|
| 550 | meantime=0 |
|---|
| 551 | resCmd=0 |
|---|
| 552 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 553 | #----------------------------------- |
|---|
| 554 | # Set output file name from first and last files from the current set |
|---|
| 555 | for file in $( cat $set) ; do |
|---|
| 556 | |
|---|
| 557 | diroutputfile=`dirname $file | sed -e "s%$dirin%$dirout_work%"` |
|---|
| 558 | mkdir -p $diroutputfile |
|---|
| 559 | echo "Output file to write: $diroutputfile/$( basename $file ) work_cp" |
|---|
| 560 | |
|---|
| 561 | #----------------------------------- |
|---|
| 562 | # Try 1 time before fire "FAILED" |
|---|
| 563 | # Waiting for CCRT command |
|---|
| 564 | cpcmd="cp " |
|---|
| 565 | cpoptions="-rf" |
|---|
| 566 | $cpcmd $cpoptions $file $diroutputfile > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 567 | resCmd=$(( $resCmd || $? )) |
|---|
| 568 | done |
|---|
| 569 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : timeS |
|---|
| 570 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 571 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 572 | if [ $resCmd -eq 0 ] ; then |
|---|
| 573 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 574 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 575 | echo "DONE ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
|---|
| 576 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 577 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 578 | else |
|---|
| 579 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 580 | echo "====> FAILED at try #$nbtries" |
|---|
| 581 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
|---|
| 582 | exit 1 |
|---|
| 583 | fi |
|---|
| 584 | |
|---|
| 585 | #----------------------------------- |
|---|
| 586 | |
|---|
| 587 | fi |
|---|
| 588 | |
|---|
| 589 | # gpdebug : traitement des simu < 1 Go ou de type create_etat0 |
|---|
| 590 | # il n'est censé n'y avoir qu'un seul fichier tar_full_simul.list par simu. |
|---|
| 591 | # d'ou le "if" et non le "for" |
|---|
| 592 | # pense bete : |
|---|
| 593 | # * implication dans showPackProgress.sh (fichier status) ? |
|---|
| 594 | if [ "$baseNameOfListFile" == "tar_full_simul.list" ] |
|---|
| 595 | then |
|---|
| 596 | # set="${PATH_SIMU}/tar_full_simul.list" # gpdebug : foireux ? |
|---|
| 597 | #----------------------------------- |
|---|
| 598 | echo "#-------------------" |
|---|
| 599 | echo "Set: $set" |
|---|
| 600 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 601 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 602 | statusfile=${set%%.list}.status |
|---|
| 603 | logfile=${set%%.list}_${datestr}.log |
|---|
| 604 | |
|---|
| 605 | #----------------------------------- |
|---|
| 606 | # Create status file if not exists |
|---|
| 607 | if [ ! -e $statusfile ] ; then |
|---|
| 608 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 609 | fi |
|---|
| 610 | |
|---|
| 611 | #----------------------------------- |
|---|
| 612 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 613 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 614 | printf "====> " |
|---|
| 615 | tail -1 $statusfile |
|---|
| 616 | exit 0 |
|---|
| 617 | fi |
|---|
| 618 | |
|---|
| 619 | #----------------------------------- |
|---|
| 620 | # Set output file name from list name |
|---|
| 621 | # echo "PATH_SIMU=$PATH_SIMU" |
|---|
| 622 | dirOfOutputFile=`echo $PATH_SIMU | sed "s;${IGCM_DEM};${OUTPUT_STORE};" ` |
|---|
| 623 | fileout=${dirnameOfListFile}.tar |
|---|
| 624 | # echo "dirnameOfListFile=$dirnameOfListFile" |
|---|
| 625 | outputfile=$dirOfOutputFile/${fileout} |
|---|
| 626 | mkdir -p $dirOfOutputFile |
|---|
| 627 | echo "Output file to write: $outputfile tar_full_simul" |
|---|
| 628 | |
|---|
| 629 | # exit 0 # a virer |
|---|
| 630 | |
|---|
| 631 | #----------------------------------- |
|---|
| 632 | # Try 1 time before fire "FAILED" |
|---|
| 633 | # Waiting for CCRT command |
|---|
| 634 | tarcmd=tar |
|---|
| 635 | taroptions="--format=posix -W -cf" |
|---|
| 636 | # taroptions="--format=posix -cf" |
|---|
| 637 | |
|---|
| 638 | filefirst=`head -n 1 $set` |
|---|
| 639 | dirinputfile=`dirname $filefirst` |
|---|
| 640 | cd $dirinputfile |
|---|
| 641 | |
|---|
| 642 | set_local=${set%%.list}.local |
|---|
| 643 | > $set_local |
|---|
| 644 | for file in $( cat $set) ; do |
|---|
| 645 | basename $file >> $set_local |
|---|
| 646 | done |
|---|
| 647 | # ls |
|---|
| 648 | |
|---|
| 649 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 650 | resCmd=0 |
|---|
| 651 | $tarcmd $taroptions $outputfile --dereference --files-from $set_local > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 652 | resCmd=$? |
|---|
| 653 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 654 | |
|---|
| 655 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 656 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 657 | if [ $resCmd -eq 0 ] ; then |
|---|
| 658 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 659 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 660 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
|---|
| 661 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 662 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 663 | else |
|---|
| 664 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 665 | echo "====> FAILED at try #$nbtries" |
|---|
| 666 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
|---|
| 667 | exit 1 |
|---|
| 668 | fi |
|---|
| 669 | |
|---|
| 670 | #----------------------------------- |
|---|
| 671 | fi |
|---|
| 672 | |
|---|
| 673 | |
|---|
| 674 | |
|---|
| 675 | |
|---|
| 676 | |
|---|
| 677 | |
|---|
| 678 | |
|---|
| 679 | |
|---|
| 680 | |
|---|
| 681 | |
|---|
| 682 | |
|---|
