[1717] | 1 | #!/bin/bash |
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| 2 | #------------------------------------------------------ |
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| 3 | switchtotar=0 |
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| 4 | maxtries=3 |
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| 5 | #--------------------------------------------- |
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| 6 | while [ $# -ne 0 ] |
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| 7 | do |
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| 8 | case $1 in |
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| 9 | --switchtotar) |
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| 10 | switchtotar=1 |
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| 11 | shift 1 ;; |
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| 12 | --maxtries) |
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| 13 | maxtries=$2 |
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| 14 | shift 2 ;; |
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| 15 | -h|--help|-help) |
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| 16 | echo "----------------------------------------------------------------------------" |
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| 17 | echo "Usage: enlarge_my_files.sh [--switchtotar] [--maxtries N] dirin dirout" |
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| 18 | echo |
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| 19 | echo "Description:" |
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[1752] | 20 | echo " Pass a ncrcat, tar or cp command on files from prepared sets of files." |
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| 21 | echo " For ncrcat command 2 shots will be done at each try". |
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[1717] | 22 | echo |
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[1752] | 23 | echo " A status file and a log file will be created in output_ncrcat directory." |
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| 24 | echo " Copy a set to output_tar directory for later processing after N tries." |
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[1717] | 25 | echo |
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| 26 | echo "Arguments:" |
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| 27 | echo " dirin is the input directory where files to concatenate will be read" |
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| 28 | echo " dirout is the output directory where concatenated files will be written" |
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| 29 | echo |
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| 30 | echo " The following directory must exist where the command enlarge_my_files is run:" |
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| 31 | echo " enlarge_my_files" |
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[1768] | 32 | echo " |-- output_ncrcat" |
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[1752] | 33 | echo " | |-- set_000001.list" |
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| 34 | echo " | |-- set_000002.list" |
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| 35 | echo " | |-- set_000003.list" |
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| 36 | echo " | |-- set_000004.list" |
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| 37 | echo " | \`-- set_000005.list" |
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[1768] | 38 | echo " \`-- output_tar" |
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[1717] | 39 | echo |
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| 40 | echo "Options:" |
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| 41 | echo " -h, --help, -help" |
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| 42 | echo " Print this manual." |
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| 43 | echo " --switchtotar" |
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| 44 | echo " Abort ncrcat operation and switch to tar command" |
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| 45 | echo " --maxtries N" |
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| 46 | echo " Maximum number of tries before switching to tar command" |
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| 47 | echo " Default is 3" |
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| 48 | echo |
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| 49 | echo "----------------------------------------------------------------------------" |
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| 50 | exit ;; |
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| 51 | -*) |
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| 52 | `dirname $0`/enlarge_my_files.sh -h |
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| 53 | exit ;; |
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| 54 | *) |
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| 55 | break ;; |
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| 56 | esac |
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| 57 | done |
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| 58 | |
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| 59 | if [ $# -lt 2 ] ; then |
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| 60 | `dirname $0`/enlarge_my_files.sh -h |
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| 61 | exit |
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| 62 | fi |
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| 63 | |
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[1853] | 64 | if ( \ |
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| 65 | [ ! -d $PATH_SIMU/output_ncrcat ] || \ |
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| 66 | [ ! -d $PATH_SIMU/output_tar ] || \ |
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| 67 | [ ! -d $PATH_SIMU/restart_tar ] || \ |
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| 68 | [ ! -d $PATH_SIMU/store_cp ] || \ |
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| 69 | [ ! -d $PATH_SIMU/work_cp ] || \ |
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| 70 | [ ! -d $PATH_SIMU/debug_tar ] || \ |
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| 71 | [ ! -d $PATH_SIMU/other_tar ] \ |
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| 72 | ) \ |
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| 73 | && \ |
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| 74 | [ ! -e $PATH_SIMU/tar_full_simul.list ] |
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| 75 | then |
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[1717] | 76 | `dirname $0`/enlarge_my_files.sh -h |
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| 77 | exit |
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| 78 | fi |
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| 79 | |
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| 80 | #------------------------------------------------------ |
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| 81 | dirin=$1 |
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| 82 | dirout=$2 |
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[1752] | 83 | dirout_work=$3 |
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[1717] | 84 | |
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| 85 | #------------------------------------------------------ |
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| 86 | function find_varstoexclude { |
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| 87 | nbfile=0 |
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| 88 | for file in `cat $1` ; do |
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[1841] | 89 | # ncdump -h ${file} | gawk '{if (match($0, /(byte|char|short|int|float|double) (.*)\(/, arr)) print arr[2] }' >> tmp_$$.txt |
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| 90 | ncdump -h ${file} | grep -Ew "byte|char|short|int|float|double" | awk -F\( '{split($1,a," ") ; split($2,b,")") ; if (a[2] != b[1]) print a[2]}' >> tmp_$$.txt |
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[1717] | 91 | let nbfile=nbfile+1 |
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| 92 | done |
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| 93 | |
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| 94 | varstoexclude=`cat tmp_$$.txt | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 != nbfile) {print $2}}' | paste -s -d','` |
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| 95 | varstoexcludefiltered=`cat tmp_$$.txt | sort | uniq -c | awk -v nbfile=$nbfile '{if (($1 != nbfile) && !(match($2, /t_inst_(.*)/))) {print $2}}' | paste -s -d','` |
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| 96 | nbvars=`echo $varstoexcludefiltered | gawk -F',' '{print NF}'` |
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| 97 | |
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| 98 | rm -f tmp_$$.txt |
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| 99 | |
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| 100 | return 0 |
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| 101 | } |
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| 102 | |
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[1822] | 103 | # gpdebug : pour test showPackProgress.sh ************************* |
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| 104 | export RANDOM=$$ |
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| 105 | |
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| 106 | function gives_0_or_1 |
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| 107 | { |
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| 108 | bit=-1 |
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| 109 | let "bit = RANDOM % 2" |
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| 110 | echo $bit |
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| 111 | } |
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| 112 | |
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| 113 | resultCmd= |
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| 114 | # gpdebug : ****************************** fin ******************** |
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| 115 | |
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[1849] | 116 | source ${EXE_DIR}/DEM_utilities.sh # gpdebug : pour trouver les fonctions de mesure de temps |
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[1822] | 117 | |
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[1855] | 118 | if ( \ |
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| 119 | [ -d $PATH_SIMU/output_ncrcat ] || \ |
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| 120 | [ -d $PATH_SIMU/output_tar ] || \ |
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| 121 | [ -d $PATH_SIMU/restart_tar ] || \ |
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| 122 | [ -d $PATH_SIMU/store_cp ] || \ |
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| 123 | [ -d $PATH_SIMU/work_cp ] || \ |
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| 124 | [ -d $PATH_SIMU/debug_tar ] || \ |
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| 125 | [ -d $PATH_SIMU/other_tar ] \ |
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| 126 | ) |
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| 127 | then |
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[1717] | 128 | |
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[1855] | 129 | #------------------------------------------------------ |
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| 130 | for set in $( ls $PATH_SIMU/output_ncrcat/*list ) ; do |
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[1717] | 131 | |
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[1855] | 132 | #----------------------------------- |
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| 133 | echo "#-------------------" |
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| 134 | echo "Set: $set" |
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| 135 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
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| 136 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 137 | statusfile=${set%%.list}.status |
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| 138 | logfile=${set%%.list}_${datestr}.log |
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[1717] | 139 | |
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[1855] | 140 | #----------------------------------- |
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| 141 | # Create status file if not exists |
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| 142 | if [ ! -e $statusfile ] ; then |
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| 143 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
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| 144 | fi |
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[1717] | 145 | |
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[1855] | 146 | #----------------------------------- |
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| 147 | # Switch to tar command |
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| 148 | if [ $switchtotar -eq 1 ] ; then |
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| 149 | echo "====> DELEGATE to tar command with option --switchtotar" |
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| 150 | echo "DELEGATE to tar command with option --switchtotar" >> $statusfile |
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| 151 | mv $set $PATH_SIMU/output_tar |
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| 152 | continue |
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| 153 | fi |
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[1717] | 154 | |
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[1855] | 155 | #----------------------------------- |
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| 156 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
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| 157 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
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| 158 | printf "====> " |
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| 159 | tail -1 $statusfile |
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| 160 | continue |
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| 161 | fi |
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[1717] | 162 | |
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[1855] | 163 | #----------------------------------- |
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| 164 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
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| 165 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
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| 166 | echo "Nb of tries: $nbtries" |
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[1766] | 167 | |
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[1855] | 168 | #----------------------------------- |
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| 169 | # Set output file name from list name |
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[1766] | 170 | |
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[1855] | 171 | fileout1=$( basename $set ) |
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| 172 | fileout=${fileout1%.list} |
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[1717] | 173 | |
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[1855] | 174 | filefirst=`head -n 1 $set` |
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| 175 | diroutputfile=`dirname $filefirst | sed -e "s%$dirin%$dirout%"` |
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[1717] | 176 | |
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[1855] | 177 | outputfile=$diroutputfile/${fileout} |
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| 178 | mkdir -p $diroutputfile |
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| 179 | echo "Output file to write: $outputfile" |
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[1717] | 180 | |
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[1855] | 181 | #----------------------------------- |
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| 182 | # Find variables to exclude to have homogeneous files (always exclude 't_inst_.*') |
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| 183 | extratar=0 |
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| 184 | find_varstoexclude $set |
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| 185 | if [ $nbvars -eq 0 ] ; then |
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| 186 | varstoexclude="t_inst_.*" |
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| 187 | else |
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| 188 | # There are others variables than 't_inst_.*' so an extra tar file will be created |
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| 189 | varstoexclude="t_inst_.*,$varstoexcludefiltered" |
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| 190 | extratar=1 |
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| 191 | # Copy to output_tar directory |
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| 192 | echo "====> COPY to tar command because find other variables ($varstoexcludefiltered) than t_inst_*" |
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| 193 | echo "COPY to tar command because find other variables ($varstoexcludefiltered) than t_inst_*" >> $statusfile |
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| 194 | cp $set $PATH_SIMU/output_tar |
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| 195 | fi |
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[1717] | 196 | |
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[1855] | 197 | #----------------------------------- |
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| 198 | # Try 2 times before fire "FAILED" |
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| 199 | ncrcatcmd=ncrcat |
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| 200 | ncrcatoptions="--md5_digest" |
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| 201 | # ncrcatoptions="" |
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[1717] | 202 | |
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[1855] | 203 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
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| 204 | resCmd=0 |
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| 205 | cat $set | $ncrcatcmd $ncrcatoptions -O -x -v $varstoexclude -o $outputfile > $logfile 2>&1 # gpdebug : a retablir |
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| 206 | resCmd=$? |
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| 207 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
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[1717] | 208 | |
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[1855] | 209 | # resultCmd=$( gives_0_or_1 ) |
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| 210 | # resultCmd=1 |
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| 211 | # if [ $resultCmd -eq 0 ] ; then |
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| 212 | if [ $resCmd -eq 0 ] ; then |
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| 213 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
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| 214 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 215 | echo "DONE ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
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| 216 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 2)" |
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| 217 | echo "COMPLETED at try #$nbtries (at 1st shot on 2)" >> $statusfile |
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| 218 | else |
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| 219 | # Add --md5_digest |
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| 220 | rm -f $outputfile*ncrcat.tmp |
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| 221 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
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| 222 | resCmd=0 |
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| 223 | cat $set | $ncrcatcmd $ncrcatoptions -O -x -v $varstoexclude -o $outputfile > $logfile 2>&1 # gpdebug : a retablir |
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| 224 | resCmd=$? |
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| 225 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
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| 226 | # resultCmd=$( gives_0_or_1 ) |
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| 227 | # resultCmd=1 |
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| 228 | # if [ $resultCmd -eq 0 ] ; then |
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| 229 | if [ $resCmd -eq 0 ] ; then |
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| 230 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
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| 231 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 232 | echo "DONE ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
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| 233 | echo "====> COMPLETED at try #$nbtries (at 2nd shot on 2)" |
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| 234 | echo "COMPLETED at try #$nbtries (at 2nd shot on 2)" >> $statusfile |
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| 235 | else |
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| 236 | rm -f $outputfile*ncrcat.tmp |
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| 237 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 238 | echo "====> FAILED at try #$nbtries" |
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| 239 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
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| 240 | if [ $nbtries -ge $maxtries ] ; then |
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| 241 | echo "====> DELEGATE to tar command after $nbtries tries (maxtries=$maxtries)" |
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| 242 | echo "DELEGATE to tar command after $nbtries tries (maxtries=$maxtries)" >> $statusfile |
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| 243 | cp $set $PATH_SIMU/output_tar # gpdebug : a retablir |
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| 244 | fi |
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| 245 | fi |
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| 246 | fi |
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[1717] | 247 | |
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[1855] | 248 | done |
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[1717] | 249 | |
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[1855] | 250 | #------------------------------------------------------ |
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[1717] | 251 | |
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[1855] | 252 | for set in $( ls $PATH_SIMU/output_tar/*list ) ; do |
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[1717] | 253 | |
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[1855] | 254 | #----------------------------------- |
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| 255 | echo "#-------------------" |
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| 256 | echo "Set: $set" |
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| 257 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
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| 258 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 259 | statusfile=${set%%.list}.status |
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| 260 | logfile=${set%%.list}_${datestr}.log |
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[1717] | 261 | |
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[1855] | 262 | #----------------------------------- |
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| 263 | # Create status file if not exists |
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| 264 | if [ ! -e $statusfile ] ; then |
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| 265 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
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| 266 | fi |
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[1766] | 267 | |
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[1855] | 268 | #----------------------------------- |
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| 269 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
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| 270 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
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| 271 | printf "====> " |
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| 272 | tail -1 $statusfile |
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| 273 | continue |
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| 274 | fi |
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[1766] | 275 | |
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[1855] | 276 | #----------------------------------- |
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| 277 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
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| 278 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
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| 279 | # echo "Nb of tries: $nbtries" |
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[1717] | 280 | |
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[1855] | 281 | #----------------------------------- |
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| 282 | # Set output file name from list name |
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[1752] | 283 | |
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[1855] | 284 | fileout1=$( basename $set ) |
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| 285 | fileout=${fileout1%.list}.tar |
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[1752] | 286 | |
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[1855] | 287 | filefirst=`head -n 1 $set` |
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| 288 | dirinputfile=`dirname $filefirst` |
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| 289 | diroutputfile=`dirname $filefirst | sed -e "s%$dirin%$dirout%"` |
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[1752] | 290 | |
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[1855] | 291 | outputfile=$diroutputfile/${fileout} |
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| 292 | mkdir -p $diroutputfile |
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| 293 | echo "Output file to write: $outputfile" |
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[1752] | 294 | |
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[1855] | 295 | #----------------------------------- |
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| 296 | # Try 1 time before fire "FAILED" |
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| 297 | # Waiting for CCRT command |
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| 298 | tarcmd=tar |
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| 299 | taroptions="--format=posix -W -cf" |
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| 300 | #taroptions="--format=posix -cf" |
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| 301 | cd $dirinputfile |
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[1752] | 302 | |
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[1855] | 303 | set_local=$set".local" |
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| 304 | for file in $( cat $set) ; do |
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| 305 | basename $file >> $set".local" |
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| 306 | done |
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[1752] | 307 | |
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[1855] | 308 | # #----------------------------------- |
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| 309 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
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| 310 | resCmd=0 |
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| 311 | $tarcmd $taroptions $outputfile --dereference --files-from $set.local > $logfile 2>&1 # gpdebug : a retablir |
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| 312 | resCmd=$? |
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| 313 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
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[1752] | 314 | |
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[1855] | 315 | # resultCmd=$( gives_0_or_1 ) |
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| 316 | # if [ $resultCmd -eq 0 ] ; then |
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| 317 | if [ $resCmd -eq 0 ] ; then |
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| 318 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
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| 319 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 320 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
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| 321 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
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| 322 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
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| 323 | else |
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| 324 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 325 | echo "====> FAILED at try #$nbtries" |
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| 326 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
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[1752] | 327 | |
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[1855] | 328 | fi |
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| 329 | rm -f $set".local" |
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| 330 | #----------------------------------- |
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[1752] | 331 | |
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[1855] | 332 | done |
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[1752] | 333 | |
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[1717] | 334 | |
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[1855] | 335 | #------------------------------------------------------ |
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[1717] | 336 | |
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[1855] | 337 | for set in $( ls $PATH_SIMU/restart_tar/*list ) ; do |
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| 338 | #----------------------------------- |
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| 339 | echo "#-------------------" |
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| 340 | echo "Set: $set" |
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| 341 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
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| 342 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 343 | statusfile=${set%%.list}.status |
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| 344 | logfile=${set%%.list}_${datestr}.log |
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[1717] | 345 | |
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[1855] | 346 | #----------------------------------- |
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| 347 | # Create status file if not exists |
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| 348 | if [ ! -e $statusfile ] ; then |
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| 349 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
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| 350 | fi |
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[1717] | 351 | |
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[1855] | 352 | #----------------------------------- |
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| 353 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
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| 354 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
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| 355 | printf "====> " |
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| 356 | tail -1 $statusfile |
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| 357 | continue |
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| 358 | fi |
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[1752] | 359 | |
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[1855] | 360 | #----------------------------------- |
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| 361 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
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| 362 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
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| 363 | # echo "Nb of tries: $nbtries" |
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[1752] | 364 | |
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[1855] | 365 | #----------------------------------- |
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| 366 | # Set output file name from list name |
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| 367 | dirin1=$PATH_SIMU/RESTART |
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| 368 | dirin2=${dirin1##${IGCM_DEM}} |
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| 369 | dirin3=${dirin2##/$( basename ${INPUT_DMF_DATA} )} |
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| 370 | diroutputfile=${OUTPUT_STORE}${dirin3} |
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| 371 | fileout1=$( basename $set ) |
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| 372 | fileout=${fileout1%.list}.tar |
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| 373 | outputfile=$diroutputfile/${fileout} |
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| 374 | mkdir -p $diroutputfile |
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| 375 | echo "Output file to write: $outputfile" |
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[1752] | 376 | |
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[1855] | 377 | #----------------------------------- |
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| 378 | # Try 1 time before fire "FAILED" |
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| 379 | # Waiting for CCRT command |
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| 380 | tarcmd=tar |
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| 381 | taroptions="--format=posix -W -cf" |
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| 382 | # taroptions="--format=posix -cf" |
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| 383 | cd $dirin1 |
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| 384 | # ls |
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[1752] | 385 | |
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[1855] | 386 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
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| 387 | resCmd=0 |
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| 388 | $tarcmd $taroptions $outputfile --dereference --files-from $set > $logfile 2>&1 # gpdebug : a retablir |
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| 389 | resCmd=$? |
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| 390 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
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[1822] | 391 | |
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[1855] | 392 | # resultCmd=$( gives_0_or_1 ) |
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| 393 | # if [ $resultCmd -eq 0 ] ; then |
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| 394 | if [ $resCmd -eq 0 ] ; then |
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| 395 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
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| 396 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 397 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
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| 398 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
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| 399 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
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| 400 | else |
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| 401 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
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| 402 | echo "====> FAILED at try #$nbtries" |
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| 403 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
---|
[1752] | 404 | |
---|
[1855] | 405 | fi |
---|
[1752] | 406 | |
---|
[1855] | 407 | #----------------------------------- |
---|
[1752] | 408 | |
---|
[1855] | 409 | done |
---|
[1752] | 410 | |
---|
[1855] | 411 | #------------------------------------------------------ |
---|
| 412 | for set in $( ls $PATH_SIMU/debug_tar/*list ) ; do |
---|
[1752] | 413 | |
---|
[1855] | 414 | #----------------------------------- |
---|
| 415 | echo "#-------------------" |
---|
| 416 | echo "Set: $set" |
---|
| 417 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 418 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 419 | statusfile=${set%%.list}.status |
---|
| 420 | logfile=${set%%.list}_${datestr}.log |
---|
[1752] | 421 | |
---|
[1855] | 422 | #----------------------------------- |
---|
| 423 | # Create status file if not exists |
---|
| 424 | if [ ! -e $statusfile ] ; then |
---|
| 425 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 426 | fi |
---|
[1752] | 427 | |
---|
[1855] | 428 | #----------------------------------- |
---|
| 429 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 430 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 431 | printf "====> " |
---|
| 432 | tail -1 $statusfile |
---|
| 433 | continue |
---|
| 434 | fi |
---|
| 435 | |
---|
| 436 | #----------------------------------- |
---|
| 437 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 438 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 439 | # echo "Nb of tries: $nbtries" |
---|
| 440 | |
---|
| 441 | #----------------------------------- |
---|
| 442 | # Set output file name from list name |
---|
| 443 | dirin1=$PATH_SIMU/DEBUG |
---|
| 444 | dirin2=${dirin1##${IGCM_DEM}} |
---|
| 445 | dirin3=${dirin2##/$( basename ${INPUT_DMF_DATA} )} |
---|
| 446 | diroutputfile=${OUTPUT_STORE}${dirin3} |
---|
| 447 | fileout1=$( basename $set ) |
---|
| 448 | fileout=${fileout1%.list}.tar |
---|
| 449 | outputfile=$diroutputfile/${fileout} |
---|
[1752] | 450 | mkdir -p $diroutputfile |
---|
[1855] | 451 | echo "Output file to write: $outputfile" |
---|
| 452 | |
---|
| 453 | #----------------------------------- |
---|
| 454 | # Try 1 time before fire "FAILED" |
---|
| 455 | # Waiting for CCRT command |
---|
| 456 | tarcmd=tar |
---|
| 457 | taroptions="--format=posix -W -cf" |
---|
| 458 | # taroptions="--format=posix -cf" |
---|
| 459 | cd $dirin1 |
---|
| 460 | # ls |
---|
| 461 | |
---|
[1822] | 462 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
[1843] | 463 | resCmd=0 |
---|
[1855] | 464 | $tarcmd $taroptions $outputfile --dereference --files-from $set > $logfile 2>&1 # gpdebug : a retablir |
---|
[1843] | 465 | resCmd=$? |
---|
[1822] | 466 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
[1752] | 467 | |
---|
[1855] | 468 | # resultCmd=$( gives_0_or_1 ) |
---|
| 469 | # if [ $resultCmd -eq 0 ] ; then |
---|
| 470 | if [ $resCmd -eq 0 ] ; then |
---|
| 471 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
| 472 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 473 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
---|
| 474 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
| 475 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 476 | else |
---|
| 477 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 478 | echo "====> FAILED at try #$nbtries" |
---|
| 479 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
---|
[1752] | 480 | |
---|
[1855] | 481 | fi |
---|
[1752] | 482 | |
---|
[1855] | 483 | #----------------------------------- |
---|
[1752] | 484 | |
---|
[1855] | 485 | done |
---|
[1752] | 486 | |
---|
[1855] | 487 | #------------------------------------------------------ |
---|
| 488 | for set in $( ls $PATH_SIMU/store_cp/*list ) ; do |
---|
[1752] | 489 | |
---|
[1855] | 490 | #----------------------------------- |
---|
| 491 | echo "#-------------------" |
---|
| 492 | echo "Set: $set" |
---|
| 493 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 494 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 495 | statusfile=${set%%.list}.status |
---|
| 496 | logfile=${set%%.list}_${datestr}.log |
---|
[1752] | 497 | |
---|
[1855] | 498 | #----------------------------------- |
---|
| 499 | # Create status file if not exists |
---|
| 500 | if [ ! -e $statusfile ] ; then |
---|
| 501 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 502 | fi |
---|
[1752] | 503 | |
---|
[1855] | 504 | #----------------------------------- |
---|
| 505 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 506 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 507 | printf "====> " |
---|
| 508 | tail -1 $statusfile |
---|
| 509 | continue |
---|
| 510 | fi |
---|
[1853] | 511 | |
---|
[1855] | 512 | #----------------------------------- |
---|
| 513 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 514 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 515 | # echo "Nb of tries: $nbtries" |
---|
| 516 | |
---|
| 517 | #----------------------------------- |
---|
| 518 | # Set output file name from first and last files from the current set |
---|
| 519 | for file in $( cat $set) ; do |
---|
| 520 | |
---|
| 521 | diroutputfile=`dirname $file | sed -e "s%$dirin%$dirout%"` |
---|
| 522 | mkdir -p $diroutputfile |
---|
| 523 | echo "Output file to write: $diroutputfile/$( basename $file )" |
---|
| 524 | |
---|
| 525 | #----------------------------------- |
---|
| 526 | # Try 1 time before fire "FAILED" |
---|
| 527 | # Waiting for CCRT command |
---|
| 528 | cpcmd="cp " |
---|
| 529 | cpoptions="-rf" |
---|
| 530 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
| 531 | resCmd=0 |
---|
| 532 | $cpcmd $cpoptions $file $diroutputfile > $logfile 2>&1 # gpdebug : a retablir |
---|
| 533 | resCmd=$? |
---|
| 534 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
| 535 | done |
---|
| 536 | |
---|
| 537 | # resultCmd=$( gives_0_or_1 ) |
---|
| 538 | # if [ $resultCmd -eq 0 ] ; then |
---|
| 539 | if [ $resCmd -eq 0 ] ; then |
---|
| 540 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
| 541 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 542 | echo "DONE ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
---|
| 543 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
| 544 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 545 | else |
---|
| 546 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 547 | echo "====> FAILED at try #$nbtries" |
---|
| 548 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
---|
| 549 | |
---|
| 550 | fi |
---|
| 551 | |
---|
| 552 | #----------------------------------- |
---|
| 553 | |
---|
| 554 | done |
---|
| 555 | |
---|
| 556 | #------------------------------------------------------ |
---|
| 557 | for set in $( ls $PATH_SIMU/work_cp/*list ) ; do |
---|
| 558 | |
---|
| 559 | #----------------------------------- |
---|
| 560 | echo "#-------------------" |
---|
| 561 | echo "Set: $set" |
---|
| 562 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 563 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 564 | statusfile=${set%%.list}.status |
---|
| 565 | logfile=${set%%.list}_${datestr}.log |
---|
| 566 | |
---|
| 567 | #----------------------------------- |
---|
| 568 | # Create status file if not exists |
---|
| 569 | if [ ! -e $statusfile ] ; then |
---|
| 570 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 571 | fi |
---|
| 572 | |
---|
| 573 | #----------------------------------- |
---|
| 574 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 575 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 576 | printf "====> " |
---|
| 577 | tail -1 $statusfile |
---|
| 578 | continue |
---|
| 579 | fi |
---|
| 580 | |
---|
| 581 | #----------------------------------- |
---|
| 582 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 583 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 584 | # echo "Nb of tries: $nbtries" |
---|
| 585 | |
---|
| 586 | #----------------------------------- |
---|
| 587 | # Set output file name from first and last files from the current set |
---|
| 588 | for file in $( cat $set) ; do |
---|
| 589 | |
---|
| 590 | diroutputfile=`dirname $file | sed -e "s%$dirin%$dirout_work%"` |
---|
| 591 | mkdir -p $diroutputfile |
---|
| 592 | echo "Output file to write: $diroutputfile/$( basename $file )" |
---|
| 593 | |
---|
| 594 | #----------------------------------- |
---|
| 595 | # Try 1 time before fire "FAILED" |
---|
| 596 | # Waiting for CCRT command |
---|
| 597 | cpcmd="cp " |
---|
| 598 | cpoptions="-rf" |
---|
| 599 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
| 600 | resCmd=0 |
---|
| 601 | $cpcmd $cpoptions $file $diroutputfile > $logfile 2>&1 # gpdebug : a retablir |
---|
| 602 | resCmd=$? |
---|
| 603 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : timeS |
---|
| 604 | done |
---|
| 605 | |
---|
| 606 | # resultCmd=$( gives_0_or_1 ) |
---|
| 607 | # if [ $resultCmd -eq 0 ] ; then |
---|
| 608 | if [ $resCmd -eq 0 ] ; then |
---|
| 609 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
| 610 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 611 | echo "DONE ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
---|
| 612 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
| 613 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 614 | else |
---|
| 615 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 616 | echo "====> FAILED at try #$nbtries" |
---|
| 617 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
---|
| 618 | |
---|
| 619 | fi |
---|
| 620 | |
---|
| 621 | #----------------------------------- |
---|
| 622 | |
---|
| 623 | done |
---|
| 624 | fi |
---|
[1853] | 625 | # if [ "$baseNameOfListFile" == "tar_full_simul.list" ] |
---|
[1855] | 626 | for set in $( ls ${PATH_SIMU}/*.list | grep "tar_full_simul" ) |
---|
[1853] | 627 | do |
---|
| 628 | # set="${PATH_SIMU}/tar_full_simul.list" # gpdebug : foireux ? |
---|
| 629 | #----------------------------------- |
---|
| 630 | echo "#-------------------" |
---|
| 631 | echo "Set: $set" |
---|
| 632 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 633 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 634 | statusfile=${set%%.list}.status |
---|
| 635 | logfile=${set%%.list}_${datestr}.log |
---|
| 636 | |
---|
| 637 | #----------------------------------- |
---|
| 638 | # Create status file if not exists |
---|
| 639 | if [ ! -e $statusfile ] ; then |
---|
| 640 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 641 | fi |
---|
| 642 | |
---|
| 643 | #----------------------------------- |
---|
| 644 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 645 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 646 | printf "====> " |
---|
| 647 | tail -1 $statusfile |
---|
| 648 | exit 0 |
---|
| 649 | fi |
---|
| 650 | |
---|
| 651 | #----------------------------------- |
---|
| 652 | # Set output file name from list name |
---|
| 653 | # echo "PATH_SIMU=$PATH_SIMU" |
---|
| 654 | dirOfOutputFile=`echo $PATH_SIMU | sed "s;${IGCM_DEM};${OUTPUT_STORE};" ` |
---|
| 655 | fileout=${dirnameOfListFile}.tar |
---|
| 656 | # echo "dirnameOfListFile=$dirnameOfListFile" |
---|
| 657 | outputfile=$dirOfOutputFile/${fileout} |
---|
| 658 | mkdir -p $dirOfOutputFile |
---|
| 659 | echo "Output file to write: $outputfile tar_full_simul" |
---|
| 660 | |
---|
| 661 | # exit 0 # a virer |
---|
| 662 | |
---|
| 663 | #----------------------------------- |
---|
| 664 | # Try 1 time before fire "FAILED" |
---|
| 665 | # Waiting for CCRT command |
---|
| 666 | tarcmd=tar |
---|
| 667 | taroptions="--format=posix -W -cf" |
---|
| 668 | # taroptions="--format=posix -cf" |
---|
| 669 | |
---|
| 670 | filefirst=`head -n 1 $set` |
---|
| 671 | dirinputfile=`dirname $filefirst` |
---|
| 672 | cd $dirinputfile |
---|
| 673 | |
---|
| 674 | set_local=${set%%.list}.local |
---|
| 675 | > $set_local |
---|
| 676 | for file in $( cat $set) ; do |
---|
| 677 | basename $file >> $set_local |
---|
| 678 | done |
---|
| 679 | # ls |
---|
| 680 | |
---|
| 681 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
| 682 | resCmd=0 |
---|
| 683 | $tarcmd $taroptions $outputfile --dereference --files-from $set_local > $logfile 2>&1 # gpdebug : a retablir |
---|
| 684 | resCmd=$? |
---|
| 685 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
| 686 | |
---|
| 687 | # resultCmd=$( gives_0_or_1 ) |
---|
| 688 | # if [ $resultCmd -eq 0 ] ; then |
---|
| 689 | if [ $resCmd -eq 0 ] ; then |
---|
| 690 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
| 691 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 692 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
---|
| 693 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
| 694 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 695 | else |
---|
| 696 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 697 | echo "====> FAILED at try #$nbtries" |
---|
| 698 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
---|
| 699 | exit 1 |
---|
| 700 | fi |
---|
| 701 | |
---|
| 702 | #----------------------------------- |
---|
| 703 | done |
---|