[1717] | 1 | #!/bin/bash |
---|
| 2 | #------------------------------------------------------ |
---|
| 3 | switchtotar=0 |
---|
| 4 | maxtries=3 |
---|
| 5 | #--------------------------------------------- |
---|
| 6 | while [ $# -ne 0 ] |
---|
| 7 | do |
---|
| 8 | case $1 in |
---|
| 9 | --switchtotar) |
---|
| 10 | switchtotar=1 |
---|
| 11 | shift 1 ;; |
---|
| 12 | --maxtries) |
---|
| 13 | maxtries=$2 |
---|
| 14 | shift 2 ;; |
---|
| 15 | -h|--help|-help) |
---|
| 16 | echo "----------------------------------------------------------------------------" |
---|
| 17 | echo "Usage: enlarge_my_files.sh [--switchtotar] [--maxtries N] dirin dirout" |
---|
| 18 | echo |
---|
| 19 | echo "Description:" |
---|
[1752] | 20 | echo " Pass a ncrcat, tar or cp command on files from prepared sets of files." |
---|
| 21 | echo " For ncrcat command 2 shots will be done at each try". |
---|
[1717] | 22 | echo |
---|
[1752] | 23 | echo " A status file and a log file will be created in output_ncrcat directory." |
---|
| 24 | echo " Copy a set to output_tar directory for later processing after N tries." |
---|
[1717] | 25 | echo |
---|
| 26 | echo "Arguments:" |
---|
| 27 | echo " dirin is the input directory where files to concatenate will be read" |
---|
| 28 | echo " dirout is the output directory where concatenated files will be written" |
---|
| 29 | echo |
---|
| 30 | echo " The following directory must exist where the command enlarge_my_files is run:" |
---|
| 31 | echo " enlarge_my_files" |
---|
[1768] | 32 | echo " |-- output_ncrcat" |
---|
[1752] | 33 | echo " | |-- set_000001.list" |
---|
| 34 | echo " | |-- set_000002.list" |
---|
| 35 | echo " | |-- set_000003.list" |
---|
| 36 | echo " | |-- set_000004.list" |
---|
| 37 | echo " | \`-- set_000005.list" |
---|
[1768] | 38 | echo " \`-- output_tar" |
---|
[1717] | 39 | echo |
---|
| 40 | echo "Options:" |
---|
| 41 | echo " -h, --help, -help" |
---|
| 42 | echo " Print this manual." |
---|
| 43 | echo " --switchtotar" |
---|
| 44 | echo " Abort ncrcat operation and switch to tar command" |
---|
| 45 | echo " --maxtries N" |
---|
| 46 | echo " Maximum number of tries before switching to tar command" |
---|
| 47 | echo " Default is 3" |
---|
| 48 | echo |
---|
| 49 | echo "----------------------------------------------------------------------------" |
---|
| 50 | exit ;; |
---|
| 51 | -*) |
---|
| 52 | `dirname $0`/enlarge_my_files.sh -h |
---|
| 53 | exit ;; |
---|
| 54 | *) |
---|
| 55 | break ;; |
---|
| 56 | esac |
---|
| 57 | done |
---|
| 58 | |
---|
| 59 | if [ $# -lt 2 ] ; then |
---|
| 60 | `dirname $0`/enlarge_my_files.sh -h |
---|
| 61 | exit |
---|
| 62 | fi |
---|
| 63 | |
---|
[1766] | 64 | if [[ ! -d $PATH_SIMU/output_ncrcat || ! -d $PATH_SIMU/output_tar || ! -d $PATH_SIMU/restart_tar || ! -d $PATH_SIMU/store_cp || ! -d $PATH_SIMU/work_cp || ! -d $PATH_SIMU/debug_tar || ! -d $PATH_SIMU/other_tar ]] ; then |
---|
[1717] | 65 | `dirname $0`/enlarge_my_files.sh -h |
---|
| 66 | exit |
---|
| 67 | fi |
---|
| 68 | |
---|
| 69 | #------------------------------------------------------ |
---|
| 70 | dirin=$1 |
---|
| 71 | dirout=$2 |
---|
[1752] | 72 | dirout_work=$3 |
---|
[1717] | 73 | |
---|
| 74 | #------------------------------------------------------ |
---|
| 75 | function find_varstoexclude { |
---|
| 76 | nbfile=0 |
---|
| 77 | for file in `cat $1` ; do |
---|
[1841] | 78 | # ncdump -h ${file} | gawk '{if (match($0, /(byte|char|short|int|float|double) (.*)\(/, arr)) print arr[2] }' >> tmp_$$.txt |
---|
| 79 | ncdump -h ${file} | grep -Ew "byte|char|short|int|float|double" | awk -F\( '{split($1,a," ") ; split($2,b,")") ; if (a[2] != b[1]) print a[2]}' >> tmp_$$.txt |
---|
[1717] | 80 | let nbfile=nbfile+1 |
---|
| 81 | done |
---|
| 82 | |
---|
| 83 | varstoexclude=`cat tmp_$$.txt | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 != nbfile) {print $2}}' | paste -s -d','` |
---|
| 84 | varstoexcludefiltered=`cat tmp_$$.txt | sort | uniq -c | awk -v nbfile=$nbfile '{if (($1 != nbfile) && !(match($2, /t_inst_(.*)/))) {print $2}}' | paste -s -d','` |
---|
| 85 | nbvars=`echo $varstoexcludefiltered | gawk -F',' '{print NF}'` |
---|
| 86 | |
---|
| 87 | rm -f tmp_$$.txt |
---|
| 88 | |
---|
| 89 | return 0 |
---|
| 90 | } |
---|
| 91 | |
---|
[1822] | 92 | # gpdebug : pour test showPackProgress.sh ************************* |
---|
| 93 | export RANDOM=$$ |
---|
| 94 | |
---|
| 95 | function gives_0_or_1 |
---|
| 96 | { |
---|
| 97 | bit=-1 |
---|
| 98 | let "bit = RANDOM % 2" |
---|
| 99 | echo $bit |
---|
| 100 | } |
---|
| 101 | |
---|
| 102 | resultCmd= |
---|
| 103 | # gpdebug : ****************************** fin ******************** |
---|
| 104 | |
---|
[1849] | 105 | source ${EXE_DIR}/DEM_utilities.sh # gpdebug : pour trouver les fonctions de mesure de temps |
---|
[1822] | 106 | |
---|
[1717] | 107 | #------------------------------------------------------ |
---|
[1752] | 108 | for set in $( ls $PATH_SIMU/output_ncrcat/*list ) ; do |
---|
[1717] | 109 | |
---|
| 110 | #----------------------------------- |
---|
| 111 | echo "#-------------------" |
---|
| 112 | echo "Set: $set" |
---|
| 113 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 114 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 115 | statusfile=${set%%.list}.status |
---|
| 116 | logfile=${set%%.list}_${datestr}.log |
---|
| 117 | |
---|
| 118 | #----------------------------------- |
---|
| 119 | # Create status file if not exists |
---|
| 120 | if [ ! -e $statusfile ] ; then |
---|
| 121 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 122 | fi |
---|
| 123 | |
---|
| 124 | #----------------------------------- |
---|
| 125 | # Switch to tar command |
---|
| 126 | if [ $switchtotar -eq 1 ] ; then |
---|
| 127 | echo "====> DELEGATE to tar command with option --switchtotar" |
---|
| 128 | echo "DELEGATE to tar command with option --switchtotar" >> $statusfile |
---|
[1768] | 129 | mv $set $PATH_SIMU/output_tar |
---|
[1717] | 130 | continue |
---|
| 131 | fi |
---|
| 132 | |
---|
| 133 | #----------------------------------- |
---|
| 134 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 135 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 136 | printf "====> " |
---|
| 137 | tail -1 $statusfile |
---|
| 138 | continue |
---|
| 139 | fi |
---|
| 140 | |
---|
| 141 | #----------------------------------- |
---|
| 142 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 143 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 144 | echo "Nb of tries: $nbtries" |
---|
| 145 | |
---|
| 146 | #----------------------------------- |
---|
[1766] | 147 | # Set output file name from list name |
---|
| 148 | |
---|
| 149 | fileout1=$( basename $set ) |
---|
| 150 | fileout=${fileout1%.list} |
---|
| 151 | |
---|
[1717] | 152 | filefirst=`head -n 1 $set` |
---|
[1766] | 153 | diroutputfile=`dirname $filefirst | sed -e "s%$dirin%$dirout%"` |
---|
[1717] | 154 | |
---|
[1766] | 155 | outputfile=$diroutputfile/${fileout} |
---|
[1717] | 156 | mkdir -p $diroutputfile |
---|
| 157 | echo "Output file to write: $outputfile" |
---|
| 158 | |
---|
| 159 | #----------------------------------- |
---|
| 160 | # Find variables to exclude to have homogeneous files (always exclude 't_inst_.*') |
---|
| 161 | extratar=0 |
---|
| 162 | find_varstoexclude $set |
---|
| 163 | if [ $nbvars -eq 0 ] ; then |
---|
| 164 | varstoexclude="t_inst_.*" |
---|
| 165 | else |
---|
| 166 | # There are others variables than 't_inst_.*' so an extra tar file will be created |
---|
| 167 | varstoexclude="t_inst_.*,$varstoexcludefiltered" |
---|
| 168 | extratar=1 |
---|
[1768] | 169 | # Copy to output_tar directory |
---|
[1841] | 170 | echo "====> COPY to tar command because find other variables ($varstoexcludefiltered) than t_inst_*" |
---|
| 171 | echo "COPY to tar command because find other variables ($varstoexcludefiltered) than t_inst_*" >> $statusfile |
---|
[1768] | 172 | cp $set $PATH_SIMU/output_tar |
---|
[1717] | 173 | fi |
---|
| 174 | |
---|
| 175 | #----------------------------------- |
---|
| 176 | # Try 2 times before fire "FAILED" |
---|
| 177 | ncrcatcmd=ncrcat |
---|
[1823] | 178 | ncrcatoptions="--md5_digest" |
---|
| 179 | # ncrcatoptions="" |
---|
[1717] | 180 | |
---|
[1822] | 181 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
[1843] | 182 | resCmd=0 |
---|
[1822] | 183 | cat $set | $ncrcatcmd $ncrcatoptions -O -x -v $varstoexclude -o $outputfile > $logfile 2>&1 # gpdebug : a retablir |
---|
[1843] | 184 | resCmd=$? |
---|
[1822] | 185 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
| 186 | |
---|
| 187 | # resultCmd=$( gives_0_or_1 ) |
---|
| 188 | # resultCmd=1 |
---|
| 189 | # if [ $resultCmd -eq 0 ] ; then |
---|
[1843] | 190 | if [ $resCmd -eq 0 ] ; then |
---|
[1822] | 191 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
[1717] | 192 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 193 | echo "DONE ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
---|
| 194 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 2)" |
---|
| 195 | echo "COMPLETED at try #$nbtries (at 1st shot on 2)" >> $statusfile |
---|
| 196 | else |
---|
| 197 | # Add --md5_digest |
---|
[1843] | 198 | rm -f $outputfile*ncrcat.tmp |
---|
[1822] | 199 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
[1843] | 200 | resCmd=0 |
---|
[1822] | 201 | cat $set | $ncrcatcmd $ncrcatoptions -O -x -v $varstoexclude -o $outputfile > $logfile 2>&1 # gpdebug : a retablir |
---|
[1843] | 202 | resCmd=$? |
---|
[1822] | 203 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
| 204 | # resultCmd=$( gives_0_or_1 ) |
---|
| 205 | # resultCmd=1 |
---|
| 206 | # if [ $resultCmd -eq 0 ] ; then |
---|
[1843] | 207 | if [ $resCmd -eq 0 ] ; then |
---|
[1822] | 208 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
[1717] | 209 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 210 | echo "DONE ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
---|
| 211 | echo "====> COMPLETED at try #$nbtries (at 2nd shot on 2)" |
---|
| 212 | echo "COMPLETED at try #$nbtries (at 2nd shot on 2)" >> $statusfile |
---|
| 213 | else |
---|
[1843] | 214 | rm -f $outputfile*ncrcat.tmp |
---|
[1717] | 215 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 216 | echo "====> FAILED at try #$nbtries" |
---|
[1822] | 217 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
---|
[1717] | 218 | if [ $nbtries -ge $maxtries ] ; then |
---|
| 219 | echo "====> DELEGATE to tar command after $nbtries tries (maxtries=$maxtries)" |
---|
| 220 | echo "DELEGATE to tar command after $nbtries tries (maxtries=$maxtries)" >> $statusfile |
---|
[1824] | 221 | cp $set $PATH_SIMU/output_tar # gpdebug : a retablir |
---|
[1717] | 222 | fi |
---|
| 223 | fi |
---|
| 224 | fi |
---|
| 225 | |
---|
| 226 | done |
---|
| 227 | |
---|
| 228 | #------------------------------------------------------ |
---|
| 229 | |
---|
[1752] | 230 | for set in $( ls $PATH_SIMU/output_tar/*list ) ; do |
---|
[1717] | 231 | |
---|
| 232 | #----------------------------------- |
---|
| 233 | echo "#-------------------" |
---|
| 234 | echo "Set: $set" |
---|
| 235 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 236 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 237 | statusfile=${set%%.list}.status |
---|
| 238 | logfile=${set%%.list}_${datestr}.log |
---|
| 239 | |
---|
| 240 | #----------------------------------- |
---|
| 241 | # Create status file if not exists |
---|
| 242 | if [ ! -e $statusfile ] ; then |
---|
| 243 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 244 | fi |
---|
| 245 | |
---|
| 246 | #----------------------------------- |
---|
| 247 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 248 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 249 | printf "====> " |
---|
| 250 | tail -1 $statusfile |
---|
| 251 | continue |
---|
| 252 | fi |
---|
| 253 | |
---|
| 254 | #----------------------------------- |
---|
| 255 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 256 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 257 | # echo "Nb of tries: $nbtries" |
---|
| 258 | |
---|
| 259 | #----------------------------------- |
---|
| 260 | # Set output file name from list name |
---|
[1766] | 261 | |
---|
| 262 | fileout1=$( basename $set ) |
---|
| 263 | fileout=${fileout1%.list}.tar |
---|
| 264 | |
---|
[1717] | 265 | filefirst=`head -n 1 $set` |
---|
[1768] | 266 | dirinputfile=`dirname $filefirst` |
---|
[1766] | 267 | diroutputfile=`dirname $filefirst | sed -e "s%$dirin%$dirout%"` |
---|
| 268 | |
---|
| 269 | outputfile=$diroutputfile/${fileout} |
---|
[1717] | 270 | mkdir -p $diroutputfile |
---|
| 271 | echo "Output file to write: $outputfile" |
---|
| 272 | |
---|
[1752] | 273 | #----------------------------------- |
---|
| 274 | # Try 1 time before fire "FAILED" |
---|
| 275 | # Waiting for CCRT command |
---|
| 276 | tarcmd=tar |
---|
[1823] | 277 | taroptions="--format=posix -W -cf" |
---|
[1824] | 278 | #taroptions="--format=posix -cf" |
---|
[1752] | 279 | cd $dirinputfile |
---|
| 280 | |
---|
| 281 | set_local=$set".local" |
---|
| 282 | for file in $( cat $set) ; do |
---|
| 283 | basename $file >> $set".local" |
---|
| 284 | done |
---|
| 285 | |
---|
[1717] | 286 | # #----------------------------------- |
---|
[1822] | 287 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
[1843] | 288 | resCmd=0 |
---|
[1822] | 289 | $tarcmd $taroptions $outputfile --dereference --files-from $set.local > $logfile 2>&1 # gpdebug : a retablir |
---|
[1843] | 290 | resCmd=$? |
---|
[1822] | 291 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
| 292 | |
---|
| 293 | # resultCmd=$( gives_0_or_1 ) |
---|
| 294 | # if [ $resultCmd -eq 0 ] ; then |
---|
[1843] | 295 | if [ $resCmd -eq 0 ] ; then |
---|
[1822] | 296 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
[1752] | 297 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 298 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
---|
| 299 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
| 300 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 301 | else |
---|
| 302 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 303 | echo "====> FAILED at try #$nbtries" |
---|
[1822] | 304 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
---|
[1752] | 305 | |
---|
| 306 | fi |
---|
| 307 | rm -f $set".local" |
---|
[1717] | 308 | #----------------------------------- |
---|
[1752] | 309 | |
---|
| 310 | done |
---|
| 311 | |
---|
| 312 | |
---|
| 313 | #------------------------------------------------------ |
---|
| 314 | |
---|
| 315 | for set in $( ls $PATH_SIMU/restart_tar/*list ) ; do |
---|
| 316 | #----------------------------------- |
---|
| 317 | echo "#-------------------" |
---|
| 318 | echo "Set: $set" |
---|
| 319 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 320 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 321 | statusfile=${set%%.list}.status |
---|
| 322 | logfile=${set%%.list}_${datestr}.log |
---|
| 323 | |
---|
| 324 | #----------------------------------- |
---|
| 325 | # Create status file if not exists |
---|
| 326 | if [ ! -e $statusfile ] ; then |
---|
| 327 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 328 | fi |
---|
| 329 | |
---|
| 330 | #----------------------------------- |
---|
| 331 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 332 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 333 | printf "====> " |
---|
| 334 | tail -1 $statusfile |
---|
| 335 | continue |
---|
| 336 | fi |
---|
| 337 | |
---|
| 338 | #----------------------------------- |
---|
| 339 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 340 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 341 | # echo "Nb of tries: $nbtries" |
---|
| 342 | |
---|
| 343 | #----------------------------------- |
---|
| 344 | # Set output file name from list name |
---|
| 345 | dirin1=$PATH_SIMU/RESTART |
---|
| 346 | dirin2=${dirin1##${IGCM_DEM}} |
---|
| 347 | dirin3=${dirin2##/$( basename ${INPUT_DMF_DATA} )} |
---|
| 348 | diroutputfile=${OUTPUT_STORE}${dirin3} |
---|
| 349 | fileout1=$( basename $set ) |
---|
| 350 | fileout=${fileout1%.list}.tar |
---|
| 351 | outputfile=$diroutputfile/${fileout} |
---|
| 352 | mkdir -p $diroutputfile |
---|
| 353 | echo "Output file to write: $outputfile" |
---|
| 354 | |
---|
| 355 | #----------------------------------- |
---|
[1717] | 356 | # Try 1 time before fire "FAILED" |
---|
| 357 | # Waiting for CCRT command |
---|
[1752] | 358 | tarcmd=tar |
---|
[1823] | 359 | taroptions="--format=posix -W -cf" |
---|
| 360 | # taroptions="--format=posix -cf" |
---|
[1752] | 361 | cd $dirin1 |
---|
[1717] | 362 | # ls |
---|
| 363 | |
---|
[1822] | 364 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
[1843] | 365 | resCmd=0 |
---|
[1822] | 366 | $tarcmd $taroptions $outputfile --dereference --files-from $set > $logfile 2>&1 # gpdebug : a retablir |
---|
[1843] | 367 | resCmd=$? |
---|
[1822] | 368 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
| 369 | |
---|
| 370 | # resultCmd=$( gives_0_or_1 ) |
---|
| 371 | # if [ $resultCmd -eq 0 ] ; then |
---|
[1843] | 372 | if [ $resCmd -eq 0 ] ; then |
---|
[1822] | 373 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
[1717] | 374 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
[1752] | 375 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
---|
| 376 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
[1717] | 377 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 378 | else |
---|
| 379 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 380 | echo "====> FAILED at try #$nbtries" |
---|
[1822] | 381 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
---|
[1717] | 382 | |
---|
| 383 | fi |
---|
| 384 | |
---|
| 385 | #----------------------------------- |
---|
| 386 | |
---|
| 387 | done |
---|
| 388 | |
---|
[1752] | 389 | #------------------------------------------------------ |
---|
| 390 | for set in $( ls $PATH_SIMU/debug_tar/*list ) ; do |
---|
[1717] | 391 | |
---|
[1752] | 392 | #----------------------------------- |
---|
| 393 | echo "#-------------------" |
---|
| 394 | echo "Set: $set" |
---|
| 395 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 396 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 397 | statusfile=${set%%.list}.status |
---|
| 398 | logfile=${set%%.list}_${datestr}.log |
---|
[1717] | 399 | |
---|
[1752] | 400 | #----------------------------------- |
---|
| 401 | # Create status file if not exists |
---|
| 402 | if [ ! -e $statusfile ] ; then |
---|
| 403 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 404 | fi |
---|
| 405 | |
---|
| 406 | #----------------------------------- |
---|
| 407 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 408 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 409 | printf "====> " |
---|
| 410 | tail -1 $statusfile |
---|
| 411 | continue |
---|
| 412 | fi |
---|
| 413 | |
---|
| 414 | #----------------------------------- |
---|
| 415 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 416 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 417 | # echo "Nb of tries: $nbtries" |
---|
| 418 | |
---|
| 419 | #----------------------------------- |
---|
| 420 | # Set output file name from list name |
---|
| 421 | dirin1=$PATH_SIMU/DEBUG |
---|
| 422 | dirin2=${dirin1##${IGCM_DEM}} |
---|
| 423 | dirin3=${dirin2##/$( basename ${INPUT_DMF_DATA} )} |
---|
| 424 | diroutputfile=${OUTPUT_STORE}${dirin3} |
---|
| 425 | fileout1=$( basename $set ) |
---|
| 426 | fileout=${fileout1%.list}.tar |
---|
| 427 | outputfile=$diroutputfile/${fileout} |
---|
| 428 | mkdir -p $diroutputfile |
---|
| 429 | echo "Output file to write: $outputfile" |
---|
| 430 | |
---|
| 431 | #----------------------------------- |
---|
| 432 | # Try 1 time before fire "FAILED" |
---|
| 433 | # Waiting for CCRT command |
---|
| 434 | tarcmd=tar |
---|
[1823] | 435 | taroptions="--format=posix -W -cf" |
---|
| 436 | # taroptions="--format=posix -cf" |
---|
[1752] | 437 | cd $dirin1 |
---|
| 438 | # ls |
---|
[1822] | 439 | |
---|
| 440 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
[1843] | 441 | resCmd=0 |
---|
[1822] | 442 | $tarcmd $taroptions $outputfile --dereference --files-from $set > $logfile 2>&1 # gpdebug : a retablir |
---|
[1843] | 443 | resCmd=$? |
---|
[1822] | 444 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
[1752] | 445 | |
---|
[1822] | 446 | # resultCmd=$( gives_0_or_1 ) |
---|
| 447 | # if [ $resultCmd -eq 0 ] ; then |
---|
[1843] | 448 | if [ $resCmd -eq 0 ] ; then |
---|
[1822] | 449 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
[1752] | 450 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 451 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
---|
| 452 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
| 453 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 454 | else |
---|
| 455 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 456 | echo "====> FAILED at try #$nbtries" |
---|
[1822] | 457 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
---|
[1752] | 458 | |
---|
| 459 | fi |
---|
| 460 | |
---|
| 461 | #----------------------------------- |
---|
| 462 | |
---|
| 463 | done |
---|
| 464 | |
---|
| 465 | #------------------------------------------------------ |
---|
| 466 | for set in $( ls $PATH_SIMU/store_cp/*list ) ; do |
---|
| 467 | |
---|
| 468 | #----------------------------------- |
---|
| 469 | echo "#-------------------" |
---|
| 470 | echo "Set: $set" |
---|
| 471 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 472 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 473 | statusfile=${set%%.list}.status |
---|
| 474 | logfile=${set%%.list}_${datestr}.log |
---|
| 475 | |
---|
| 476 | #----------------------------------- |
---|
| 477 | # Create status file if not exists |
---|
| 478 | if [ ! -e $statusfile ] ; then |
---|
| 479 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 480 | fi |
---|
| 481 | |
---|
| 482 | #----------------------------------- |
---|
| 483 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 484 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 485 | printf "====> " |
---|
| 486 | tail -1 $statusfile |
---|
| 487 | continue |
---|
| 488 | fi |
---|
| 489 | |
---|
| 490 | #----------------------------------- |
---|
| 491 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 492 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 493 | # echo "Nb of tries: $nbtries" |
---|
| 494 | |
---|
| 495 | #----------------------------------- |
---|
| 496 | # Set output file name from first and last files from the current set |
---|
| 497 | for file in $( cat $set) ; do |
---|
| 498 | |
---|
| 499 | diroutputfile=`dirname $file | sed -e "s%$dirin%$dirout%"` |
---|
| 500 | mkdir -p $diroutputfile |
---|
| 501 | echo "Output file to write: $diroutputfile/$( basename $file )" |
---|
| 502 | |
---|
| 503 | #----------------------------------- |
---|
| 504 | # Try 1 time before fire "FAILED" |
---|
| 505 | # Waiting for CCRT command |
---|
| 506 | cpcmd="cp " |
---|
| 507 | cpoptions="-rf" |
---|
[1822] | 508 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
[1843] | 509 | resCmd=0 |
---|
[1822] | 510 | $cpcmd $cpoptions $file $diroutputfile > $logfile 2>&1 # gpdebug : a retablir |
---|
[1843] | 511 | resCmd=$? |
---|
[1822] | 512 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
---|
[1752] | 513 | done |
---|
[1822] | 514 | |
---|
| 515 | # resultCmd=$( gives_0_or_1 ) |
---|
| 516 | # if [ $resultCmd -eq 0 ] ; then |
---|
[1843] | 517 | if [ $resCmd -eq 0 ] ; then |
---|
[1822] | 518 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
[1752] | 519 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 520 | echo "DONE ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
---|
| 521 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
| 522 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 523 | else |
---|
| 524 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 525 | echo "====> FAILED at try #$nbtries" |
---|
[1822] | 526 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
---|
[1752] | 527 | |
---|
| 528 | fi |
---|
| 529 | |
---|
| 530 | #----------------------------------- |
---|
| 531 | |
---|
| 532 | done |
---|
| 533 | |
---|
| 534 | #------------------------------------------------------ |
---|
| 535 | for set in $( ls $PATH_SIMU/work_cp/*list ) ; do |
---|
| 536 | |
---|
| 537 | #----------------------------------- |
---|
| 538 | echo "#-------------------" |
---|
| 539 | echo "Set: $set" |
---|
| 540 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
---|
| 541 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 542 | statusfile=${set%%.list}.status |
---|
| 543 | logfile=${set%%.list}_${datestr}.log |
---|
| 544 | |
---|
| 545 | #----------------------------------- |
---|
| 546 | # Create status file if not exists |
---|
| 547 | if [ ! -e $statusfile ] ; then |
---|
| 548 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
---|
| 549 | fi |
---|
| 550 | |
---|
| 551 | #----------------------------------- |
---|
| 552 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
---|
| 553 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
---|
| 554 | printf "====> " |
---|
| 555 | tail -1 $statusfile |
---|
| 556 | continue |
---|
| 557 | fi |
---|
| 558 | |
---|
| 559 | #----------------------------------- |
---|
| 560 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
---|
| 561 | # nbtries=`wc -l $statusfile | cut -d' ' -f1` |
---|
| 562 | # echo "Nb of tries: $nbtries" |
---|
| 563 | |
---|
| 564 | #----------------------------------- |
---|
| 565 | # Set output file name from first and last files from the current set |
---|
| 566 | for file in $( cat $set) ; do |
---|
| 567 | |
---|
| 568 | diroutputfile=`dirname $file | sed -e "s%$dirin%$dirout_work%"` |
---|
| 569 | mkdir -p $diroutputfile |
---|
| 570 | echo "Output file to write: $diroutputfile/$( basename $file )" |
---|
| 571 | |
---|
| 572 | #----------------------------------- |
---|
| 573 | # Try 1 time before fire "FAILED" |
---|
| 574 | # Waiting for CCRT command |
---|
| 575 | cpcmd="cp " |
---|
| 576 | cpoptions="-rf" |
---|
[1822] | 577 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
---|
[1843] | 578 | resCmd=0 |
---|
[1822] | 579 | $cpcmd $cpoptions $file $diroutputfile > $logfile 2>&1 # gpdebug : a retablir |
---|
[1843] | 580 | resCmd=$? |
---|
[1822] | 581 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : timeS |
---|
[1752] | 582 | done |
---|
[1822] | 583 | |
---|
| 584 | # resultCmd=$( gives_0_or_1 ) |
---|
| 585 | # if [ $resultCmd -eq 0 ] ; then |
---|
[1843] | 586 | if [ $resCmd -eq 0 ] ; then |
---|
[1822] | 587 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
---|
[1752] | 588 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 589 | echo "DONE ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
---|
| 590 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
---|
| 591 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
---|
| 592 | else |
---|
| 593 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
---|
| 594 | echo "====> FAILED at try #$nbtries" |
---|
[1822] | 595 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
---|
[1752] | 596 | |
---|
| 597 | fi |
---|
| 598 | |
---|
| 599 | #----------------------------------- |
---|
| 600 | |
---|
| 601 | done |
---|