[1709] | 1 | #!/bin/bash |
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| 2 | ## |
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| 3 | ## Job permettant de recreer une partie du config.card d'une simulation |
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| 4 | ## Champs vises : JobName / DateBegin / DateEnd / Calendar |
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| 5 | ## |
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| 6 | |
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| 7 | # Prend en argument un fichier contenant une liste de simulations |
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| 8 | # cree pour chacune son config.card |
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| 9 | # Ex : ./create_config_card.job liste_simul_fichier_param_test1.txt liste_fichier_dmnfs |
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| 10 | # Ex : ./create_config_card.job liste_simul_param_SL.txt /cscratch/cont003/labetoul/FROM_CCRT_INFORMATIONS_DMNFS/information_dmnfs_2012-03-21 |
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| 11 | |
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| 12 | |
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| 13 | LISTE_SIMUL=${1} |
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| 14 | LISTE_DMNFS=${2} |
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| 15 | |
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| 16 | # ---- |
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[1900] | 17 | export JOB_DIR=${JOB_DIR:-${TMP_MIGR_DATA}} |
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[1709] | 18 | export IGCM_DEM=${IGCM_DEM:-${SCRATCHDIR}/IGCM_DEM} |
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| 19 | export IGCM_TMP=${IGCM_TMP:-${IGCM_DEM}/tmp} |
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| 20 | mkdir -p ${IGCM_DEM} |
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| 21 | mkdir -p ${IGCM_TMP} |
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| 22 | clean_tmp=${clean_tmp:-yes} |
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| 23 | EXE_DIR=$(dirname ${0}) |
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| 24 | SCRIPT_NAME=$(basename ${0} ) |
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| 25 | source ${EXE_DIR}/DEM_utilities.sh |
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[1822] | 26 | |
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| 27 | # gpdebug : verif si le present script a ete execute jusqu'au bout ######### |
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| 28 | MonitoringInfo="${SCRIPT_NAME}-->OK" |
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| 29 | generalMonitoring "$MonitoringInfo" |
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| 30 | |
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[1709] | 31 | DEM_log -0 "Demarrage de ${SCRIPT_NAME}" |
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[1822] | 32 | |
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| 33 | # gpdebug : on augmente la liste des proc à détruire en cas d'erreur bloquante du présent proc |
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| 34 | export listPID="$$ ${listPID}" ######### |
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| 35 | |
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[1709] | 36 | cd ${JOB_DIR} |
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| 37 | # ---- |
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| 38 | |
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| 39 | DEM_log -0 "LISTE_SIMUL : ${LISTE_SIMUL}" |
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| 40 | DEM_log -0 "LISTE_DMNFS : ${LISTE_DMNFS}" |
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| 41 | |
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| 42 | [[ -f ${IGCM_DEM}/config_card.liste ]] && rm ${IGCM_DEM}/config_card.liste |
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| 43 | |
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| 44 | #ROOT_DIR=/dmnfs05/cont003/labetoul # soit DMFDIR, soit le tampon. a ameliorer ... |
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| 45 | |
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| 46 | for PATH_SIMUL_FULL in `awk '{print $0}' ${LISTE_SIMUL}` ; do |
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| 47 | |
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| 48 | DEM_log -3 PATH_SIMUL_FULL : ${PATH_SIMUL_FULL} |
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| 49 | #PATH_SIMUL_SHORT=${PATH_SIMUL_FULL##${ROOT_DIR}} # Enleve le debut du path |
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[1842] | 50 | # PATH_SIMUL_SHORT=$(echo ${PATH_SIMUL_FULL} | sed 's%/[^/]*/[^/]*/[^/]*/%%' ) |
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[1849] | 51 | # PATH_SIMUL_SHORT=$(echo ${PATH_SIMUL_FULL} | sed 's%/ccc/dmfbuf/import_data.2/ccrt/dmnfs12/cont003/bacasable/%%' ) |
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| 52 | echo "gpdebug : PATH_SIMUL_FULL :" # gpdebug : a virer |
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| 53 | echo "$PATH_SIMUL_FULL :" # gpdebug : a virer |
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[1853] | 54 | PATH_SIMUL_SHORT=$(echo ${PATH_SIMUL_FULL} | sed "s%${INPUT_DMF_DATA}/%%" ) # gpdebug : added |
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[1849] | 55 | echo "gpdebug : PATH_SIMUL_SHORT :" # gpdebug : a virer |
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| 56 | echo "$PATH_SIMUL_SHORT :" # gpdebug : a virer |
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[1709] | 57 | DEM_log -3 PATH_SIMUL_SHORT : ${PATH_SIMUL_SHORT} |
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| 58 | |
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| 59 | IGCM_DEM_SIMU=${IGCM_DEM}/${PATH_SIMUL_SHORT} |
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| 60 | mkdir -p ${IGCM_DEM_SIMU} |
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[1726] | 61 | rm -rf ${IGCM_DEM_SIMU}/* |
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| 62 | |
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| 63 | #creation du repertoire permettant de stocker |
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| 64 | #les listes de fichiers qui ne sont pas au format output ou restart |
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| 65 | #les listes de fichiers d'analyse, les monitos et les atlas |
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| 66 | OTHER_TAR=${IGCM_DEM_SIMU}/other_tar |
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| 67 | STORE_CP=${IGCM_DEM_SIMU}/store_cp |
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| 68 | WORK_CP=${IGCM_DEM_SIMU}/work_cp |
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| 69 | |
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| 70 | DEM_log -2 "creation des repertoires : $OTHER_TAR - $STORE_CP - $WORK_CP" |
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| 71 | |
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| 72 | mkdir -p ${OTHER_TAR} |
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| 73 | mkdir -p ${STORE_CP} |
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| 74 | mkdir -p ${WORK_CP} |
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| 75 | |
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| 76 | # on recherche le nom du job |
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[1709] | 77 | JobName="" |
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| 78 | |
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[1753] | 79 | # Etablir la liste des fichiers d'Analyse |
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| 80 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Analyse | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_analyse_files.list |
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| 81 | awk -F/ '{if ($(NF)=="Analyse") print $0} ' ${IGCM_TMP}/${$}.cp_analyse_files.list > ${STORE_CP}/cp_files.list |
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[1764] | 82 | rm -f ${IGCM_TMP}/${$}.cp_analyse_files.list |
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[1753] | 83 | |
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| 84 | #On recupere egalement le fichier mesh_mask si il existe |
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| 85 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep mesh_mask | awk '{print $3}' >> ${STORE_CP}/cp_files.list |
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[1883] | 86 | mesh_mask_path=$( grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep mesh_mask | awk '{print $3}' ) |
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[1888] | 87 | if [ "x$mesh_mask_path" != "x" ] |
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| 88 | then |
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| 89 | grep -v $mesh_mask_path ${LISTE_DMNFS} > ${IGCM_TMP}/${$}.Listing_tmp.txt; mv ${IGCM_TMP}/${$}.Listing_tmp.txt ${LISTE_DMNFS} |
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| 90 | fi |
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[1753] | 91 | |
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[1764] | 92 | #On copie aussi le contenu du repertoire Exe/ |
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| 93 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep -w Exe | awk '{print $3}' >> ${IGCM_TMP}/${$}.cp_analyse_files.list |
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| 94 | awk -F/ '{if ($(NF)=="Exe") print $0} ' ${IGCM_TMP}/${$}.cp_analyse_files.list >> ${STORE_CP}/cp_files.list |
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[1834] | 95 | rm -f ${IGCM_TMP}/${$}.cp_analyse_files.list |
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[1764] | 96 | |
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| 97 | |
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[1753] | 98 | # Etablir la liste des fichiers Monito et Atlas |
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| 99 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep MONITORING | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_monito_files.list |
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| 100 | awk -F/ '{if ($(NF)=="MONITORING") print $0} ' ${IGCM_TMP}/${$}.cp_monito_files.list > ${WORK_CP}/cp_files.list |
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[1834] | 101 | rm -f ${IGCM_TMP}/${$}.cp_monito_files.list |
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[1753] | 102 | |
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| 103 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep ATLAS | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_atlas_files.list |
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| 104 | awk -F/ '{if ($(NF)=="ATLAS") print $0} ' ${IGCM_TMP}/${$}.cp_atlas_files.list >> ${WORK_CP}/cp_files.list |
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[1834] | 105 | rm -f ${IGCM_TMP}/${$}.cp_atlas_files.list |
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[1753] | 106 | |
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[1709] | 107 | # Etablir la liste des fichiers de restart |
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| 108 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Restart | awk '{print $2 " " $3}' | grep -e '.*/Restart/.*\..*' |grep -v "jnl" | sort >> ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 109 | |
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| 110 | # Retirons de la liste les fichiers que l'on n'attends pas, en particulier si il y a des sous-repertoires au repetoire restart/ |
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| 111 | for file in `awk '{print $2}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt ` ; do |
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| 112 | dir=$( echo $file | sed -e "s%.*Restart/%%") |
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| 113 | testdir=$(dirname ${dir}) |
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| 114 | if [ $testdir != "." ]; then |
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| 115 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_restart_files_config.txt) >> ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt |
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| 116 | fi |
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| 117 | done |
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| 118 | if [ -f ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt ]; then |
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| 119 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_restart_files_config.txt ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 120 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 121 | fi |
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| 122 | |
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| 123 | # Etablir la liste des fichiers output |
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| 124 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Output | awk '{print $2 " " $3}' | grep -e '.*/Output/.*\.nc$' | sort >> ${IGCM_TMP}/${$}.liste_output_files_config.txt |
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| 125 | # Retirons de la liste les fichiers que l'on n'attends pas, en particulier si il y a des sous-repertoires aux repetoires Output/*/ |
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| 126 | for file in `awk '{print $2}' ${IGCM_TMP}/${$}.liste_output_files_config.txt ` ; do |
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[1716] | 127 | dir=$( echo $file | sed -e "s%.*Output/[^/]*/%%") |
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[1709] | 128 | testdir=$(dirname ${dir}) |
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| 129 | if [ $testdir != "." ]; then |
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| 130 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_output_files_config.txt ) >> ${IGCM_TMP}/${$}.liste_no_output_files_config.txt |
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| 131 | fi |
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| 132 | done |
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| 133 | if [ -f ${IGCM_TMP}/${$}.liste_no_output_files_config.txt ]; then |
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| 134 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.liste_no_output_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 135 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_output_files_config.txt |
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| 136 | fi |
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| 137 | |
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[1726] | 138 | |
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| 139 | |
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[1736] | 140 | |
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[1709] | 141 | # Lecture du nom du job |
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| 142 | JobName=`awk -F/ '{if (NR==1) print $(NF-3)}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt` |
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[1845] | 143 | |
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| 144 | if [ $JobName = "ATM" ]; then |
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| 145 | JobName=`awk -F/ '{if (NR==1) print $(NF-4)}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt` |
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| 146 | fi |
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[1709] | 147 | DEM_log -2 JobName ${JobName} |
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| 148 | |
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[1716] | 149 | |
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[1709] | 150 | # Maintenant que nous avons JobName verifions que tous les fichiers de restart/Output sont bien du type JobName_date_* |
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| 151 | sed -e "s%.*${JobName}_\([0-9]\{8\}\)_%%" ${IGCM_TMP}/${$}.liste_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 152 | cat ${IGCM_TMP}/${$}.info_tmp.txt |grep "/" > ${IGCM_TMP}/${$}.info_tmp_bis.txt |
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| 153 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_restart_files_config.txt ${IGCM_TMP}/${$}.info_tmp_bis.txt > ${IGCM_TMP}/${$}.restart.tmp |
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| 154 | sort -k 2 ${IGCM_TMP}/${$}.restart.tmp > ${IGCM_TMP}/${$}.restart_bis.tmp |
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| 155 | mv ${IGCM_TMP}/${$}.restart_bis.tmp ${IGCM_DEM_SIMU}/liste_restart_files_config.txt |
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| 156 | # Sauvegarde des fichiers qui ne sont pas dans la norme |
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| 157 | cat ${IGCM_TMP}/${$}.info_tmp_bis.txt >> ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt |
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[1728] | 158 | mv ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt ${OTHER_TAR}/tar_no_restart_files.list |
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[1709] | 159 | |
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| 160 | |
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| 161 | sed -e "s%.*${JobName}_\([0-9]\{8\}\)_%%" ${IGCM_TMP}/${$}.liste_output_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 162 | cat ${IGCM_TMP}/${$}.info_tmp.txt |grep "/" > ${IGCM_TMP}/${$}.info_tmp_bis.txt |
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| 163 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.info_tmp_bis.txt > ${IGCM_TMP}/${$}.output.tmp |
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| 164 | sort -k 2 ${IGCM_TMP}/${$}.output.tmp > ${IGCM_TMP}/${$}.output_bis.tmp |
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| 165 | mv ${IGCM_TMP}/${$}.output_bis.tmp ${IGCM_DEM_SIMU}/liste_output_files_config.txt |
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| 166 | # Sauvegarde des fichiers qui ne sont pas dans la norme |
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| 167 | cat ${IGCM_TMP}/${$}.info_tmp_bis.txt >> ${IGCM_TMP}/${$}.liste_no_output_files_config.txt |
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[1728] | 168 | mv ${IGCM_TMP}/${$}.liste_no_output_files_config.txt ${OTHER_TAR}/tar_no_output_files.list |
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[1709] | 169 | |
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| 170 | |
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| 171 | # Recherche de DateBegin et DateEnd pour les Restarts |
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| 172 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
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| 173 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" ) |
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| 174 | DateBegin_Restart=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 175 | |
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| 176 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
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| 177 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" ) |
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| 178 | DateEnd_Restart=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 179 | |
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| 180 | # Recherche de DateBegin et DateEnd pour les Output |
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| 181 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_output_files_config.txt ) |
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| 182 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" ) |
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| 183 | DateBegin_Output=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 184 | |
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| 185 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_output_files_config.txt ) |
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| 186 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" ) |
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| 187 | DateEnd_Output=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 188 | |
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| 189 | DateBegin=${DateBegin_Restart} |
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| 190 | DateEnd=${DateEnd_Restart} |
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| 191 | |
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| 192 | DEM_log -2 "DateBegin DateEnd : ${DateBegin} ${DateEnd}" |
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| 193 | DEM_log -2 "DateBegin_Output DateEnd_Output : ${DateBegin_Output} ${DateEnd_Output}" |
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| 194 | DEM_log -2 "DateBegin_Restart DateEnd_Restart : ${DateBegin_Restart} ${DateEnd_Restart}" |
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| 195 | |
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| 196 | DateBegin=$( DEM_min ${DateBegin_Output} ${DateBegin} ) |
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| 197 | DateEnd=$( DEM_max ${DateEnd_Output} ${DateEnd} ) |
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| 198 | |
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| 199 | DEM_log -2 "DateBegin DateEnd : ${DateBegin} ${DateEnd}" |
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| 200 | |
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| 201 | [[ "${clean_tmp}" = "yes" ]] && rm -f ${IGCM_TMP}/${$}.config_name ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 202 | |
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| 203 | rm -f ${IGCM_DEM_SIMU}/config_card_${JobName} |
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| 204 | cat<<EOD>${IGCM_DEM_SIMU}/config_card_${JobName} |
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| 205 | JobName=${JobName} |
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| 206 | DateBegin=${DateBegin} |
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| 207 | DateEnd=${DateEnd} |
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| 208 | PATH_SIMUL_FULL=${PATH_SIMUL_FULL} |
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| 209 | IGCM_DEM_SIMU=${IGCM_DEM_SIMU} |
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| 210 | EOD |
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| 211 | |
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| 212 | echo "${IGCM_DEM_SIMU}/config_card_${JobName} ListToBeDone" >> ${IGCM_DEM}/config_card.liste |
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| 213 | |
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| 214 | DEM_log -1 "${IGCM_DEM_SIMU}/config_card_${JobName} ListToBeDone >> ${IGCM_DEM}/config_card.liste" |
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| 215 | |
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[1716] | 216 | #si la liste des fichiers d'output est vide on tar la simul |
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| 217 | if [[ ! -s ${IGCM_DEM_SIMU}/liste_output_files_config.txt ]]; then |
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| 218 | DEM_log -2 "liste output vide" |
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[1919] | 219 | cd ${EXE_DIR} |
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[1716] | 220 | ./write_liste_tar.sh ${IGCM_DEM_SIMU}/config_card_${JobName} |
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[1913] | 221 | cd ${JOB_DIR} |
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[1716] | 222 | fi |
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| 223 | |
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[1726] | 224 | # si les listes no_output et no_restart sont vides on les efface |
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[1728] | 225 | if [[ ! -s ${OTHER_TAR}/tar_no_output_files.list ]]; then |
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| 226 | rm -f ${OTHER_TAR}/tar_no_output_files.list |
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[1726] | 227 | fi |
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| 228 | |
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[1728] | 229 | if [[ ! -s ${OTHER_TAR}/tar_no_restart_files.list ]]; then |
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| 230 | rm -f ${OTHER_TAR}/tar_no_restart_files.list |
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[1726] | 231 | fi |
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| 232 | |
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| 233 | |
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[1709] | 234 | done |
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| 235 | |
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[1822] | 236 | # gpdebug : le script n'a pas rencontre d'erreur. On l'inscrit dans le fichier de suivi |
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| 237 | echo $MonitoringInfo >> $generalMonitorFile |
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| 238 | |
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[1709] | 239 | DEM_log -0 "Fin de ${SCRIPT_NAME}" |
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| 240 | |
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