[1709] | 1 | #!/bin/bash |
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| 2 | |
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| 3 | ## |
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| 4 | ## Job permettant de recreer une partie du config.card d'une simulation |
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| 5 | ## Champs vises : JobName / DateBegin / DateEnd / Calendar |
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| 6 | ## |
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| 7 | |
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| 8 | # Prend en argument un fichier contenant une liste de simulations |
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| 9 | # cree pour chacune son config.card |
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| 10 | # Ex : ./create_config_card.job liste_simul_fichier_param_test1.txt liste_fichier_dmnfs |
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| 11 | # Ex : ./create_config_card.job liste_simul_param_SL.txt /cscratch/cont003/labetoul/FROM_CCRT_INFORMATIONS_DMNFS/information_dmnfs_2012-03-21 |
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| 12 | |
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| 13 | |
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| 14 | LISTE_SIMUL=${1} |
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| 15 | LISTE_DMNFS=${2} |
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| 16 | |
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| 17 | # ---- |
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| 18 | export JOB_DIR=${JOB_DIR:-${PWD}} |
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| 19 | export IGCM_DEM=${IGCM_DEM:-${SCRATCHDIR}/IGCM_DEM} |
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| 20 | export IGCM_TMP=${IGCM_TMP:-${IGCM_DEM}/tmp} |
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| 21 | mkdir -p ${IGCM_DEM} |
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| 22 | mkdir -p ${IGCM_TMP} |
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| 23 | clean_tmp=${clean_tmp:-yes} |
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| 24 | EXE_DIR=$(dirname ${0}) |
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| 25 | SCRIPT_NAME=$(basename ${0} ) |
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| 26 | source ${EXE_DIR}/DEM_utilities.sh |
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[1822] | 27 | |
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| 28 | # gpdebug : verif si le present script a ete execute jusqu'au bout ######### |
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| 29 | MonitoringInfo="${SCRIPT_NAME}-->OK" |
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| 30 | generalMonitoring "$MonitoringInfo" |
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| 31 | |
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[1709] | 32 | DEM_log -0 "Demarrage de ${SCRIPT_NAME}" |
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[1822] | 33 | |
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| 34 | # gpdebug : on augmente la liste des proc à détruire en cas d'erreur bloquante du présent proc |
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| 35 | export listPID="$$ ${listPID}" ######### |
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| 36 | |
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[1709] | 37 | cd ${JOB_DIR} |
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| 38 | # ---- |
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| 39 | |
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| 40 | DEM_log -0 "LISTE_SIMUL : ${LISTE_SIMUL}" |
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| 41 | DEM_log -0 "LISTE_DMNFS : ${LISTE_DMNFS}" |
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| 42 | |
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| 43 | [[ -f ${IGCM_DEM}/config_card.liste ]] && rm ${IGCM_DEM}/config_card.liste |
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| 44 | |
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| 45 | #ROOT_DIR=/dmnfs05/cont003/labetoul # soit DMFDIR, soit le tampon. a ameliorer ... |
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| 46 | |
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| 47 | |
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| 48 | cd ${JOB_DIR} |
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| 49 | |
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| 50 | for PATH_SIMUL_FULL in `awk '{print $0}' ${LISTE_SIMUL}` ; do |
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| 51 | |
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| 52 | DEM_log -3 PATH_SIMUL_FULL : ${PATH_SIMUL_FULL} |
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| 53 | #PATH_SIMUL_SHORT=${PATH_SIMUL_FULL##${ROOT_DIR}} # Enleve le debut du path |
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| 54 | PATH_SIMUL_SHORT=$(echo ${PATH_SIMUL_FULL} | sed 's%/[^/]*/[^/]*/[^/]*/%%' ) |
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| 55 | DEM_log -3 PATH_SIMUL_SHORT : ${PATH_SIMUL_SHORT} |
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| 56 | |
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| 57 | IGCM_DEM_SIMU=${IGCM_DEM}/${PATH_SIMUL_SHORT} |
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| 58 | mkdir -p ${IGCM_DEM_SIMU} |
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[1726] | 59 | rm -rf ${IGCM_DEM_SIMU}/* |
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| 60 | |
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| 61 | #creation du repertoire permettant de stocker |
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| 62 | #les listes de fichiers qui ne sont pas au format output ou restart |
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| 63 | #les listes de fichiers d'analyse, les monitos et les atlas |
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| 64 | OTHER_TAR=${IGCM_DEM_SIMU}/other_tar |
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| 65 | STORE_CP=${IGCM_DEM_SIMU}/store_cp |
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| 66 | WORK_CP=${IGCM_DEM_SIMU}/work_cp |
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| 67 | |
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| 68 | DEM_log -2 "creation des repertoires : $OTHER_TAR - $STORE_CP - $WORK_CP" |
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| 69 | |
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| 70 | mkdir -p ${OTHER_TAR} |
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| 71 | mkdir -p ${STORE_CP} |
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| 72 | mkdir -p ${WORK_CP} |
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| 73 | |
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| 74 | # on recherche le nom du job |
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[1709] | 75 | JobName="" |
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| 76 | |
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[1753] | 77 | # Etablir la liste des fichiers d'Analyse |
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| 78 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Analyse | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_analyse_files.list |
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| 79 | awk -F/ '{if ($(NF)=="Analyse") print $0} ' ${IGCM_TMP}/${$}.cp_analyse_files.list > ${STORE_CP}/cp_files.list |
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[1764] | 80 | rm -f ${IGCM_TMP}/${$}.cp_analyse_files.list |
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[1753] | 81 | |
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| 82 | #On recupere egalement le fichier mesh_mask si il existe |
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| 83 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep mesh_mask | awk '{print $3}' >> ${STORE_CP}/cp_files.list |
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| 84 | sed '/mesh_mask/d' ${LISTE_DMNFS} > ${IGCM_TMP}/${$}.Listing_tmp.txt; mv ${IGCM_TMP}/${$}.Listing_tmp.txt ${LISTE_DMNFS} |
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| 85 | |
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[1764] | 86 | #On copie aussi le contenu du repertoire Exe/ |
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| 87 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep -w Exe | awk '{print $3}' >> ${IGCM_TMP}/${$}.cp_analyse_files.list |
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| 88 | awk -F/ '{if ($(NF)=="Exe") print $0} ' ${IGCM_TMP}/${$}.cp_analyse_files.list >> ${STORE_CP}/cp_files.list |
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| 89 | |
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| 90 | |
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[1753] | 91 | # Etablir la liste des fichiers Monito et Atlas |
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| 92 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep MONITORING | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_monito_files.list |
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| 93 | awk -F/ '{if ($(NF)=="MONITORING") print $0} ' ${IGCM_TMP}/${$}.cp_monito_files.list > ${WORK_CP}/cp_files.list |
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| 94 | |
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| 95 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep ATLAS | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_atlas_files.list |
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| 96 | awk -F/ '{if ($(NF)=="ATLAS") print $0} ' ${IGCM_TMP}/${$}.cp_atlas_files.list >> ${WORK_CP}/cp_files.list |
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| 97 | |
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| 98 | |
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[1709] | 99 | # Etablir la liste des fichiers de restart |
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| 100 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Restart | awk '{print $2 " " $3}' | grep -e '.*/Restart/.*\..*' |grep -v "jnl" | sort >> ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 101 | |
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| 102 | # Retirons de la liste les fichiers que l'on n'attends pas, en particulier si il y a des sous-repertoires au repetoire restart/ |
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| 103 | for file in `awk '{print $2}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt ` ; do |
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| 104 | dir=$( echo $file | sed -e "s%.*Restart/%%") |
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| 105 | testdir=$(dirname ${dir}) |
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| 106 | if [ $testdir != "." ]; then |
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| 107 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_restart_files_config.txt) >> ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt |
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| 108 | fi |
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| 109 | done |
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| 110 | if [ -f ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt ]; then |
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| 111 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_restart_files_config.txt ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 112 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 113 | fi |
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| 114 | |
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| 115 | # Etablir la liste des fichiers output |
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| 116 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Output | awk '{print $2 " " $3}' | grep -e '.*/Output/.*\.nc$' | sort >> ${IGCM_TMP}/${$}.liste_output_files_config.txt |
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| 117 | # Retirons de la liste les fichiers que l'on n'attends pas, en particulier si il y a des sous-repertoires aux repetoires Output/*/ |
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| 118 | for file in `awk '{print $2}' ${IGCM_TMP}/${$}.liste_output_files_config.txt ` ; do |
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[1716] | 119 | dir=$( echo $file | sed -e "s%.*Output/[^/]*/%%") |
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[1709] | 120 | testdir=$(dirname ${dir}) |
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| 121 | if [ $testdir != "." ]; then |
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| 122 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_output_files_config.txt ) >> ${IGCM_TMP}/${$}.liste_no_output_files_config.txt |
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| 123 | fi |
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| 124 | done |
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| 125 | if [ -f ${IGCM_TMP}/${$}.liste_no_output_files_config.txt ]; then |
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| 126 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.liste_no_output_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 127 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_output_files_config.txt |
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| 128 | fi |
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| 129 | |
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[1726] | 130 | |
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| 131 | |
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[1736] | 132 | |
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[1709] | 133 | # Lecture du nom du job |
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| 134 | JobName=`awk -F/ '{if (NR==1) print $(NF-3)}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt` |
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| 135 | DEM_log -2 JobName ${JobName} |
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| 136 | |
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[1716] | 137 | |
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[1709] | 138 | # Maintenant que nous avons JobName verifions que tous les fichiers de restart/Output sont bien du type JobName_date_* |
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| 139 | sed -e "s%.*${JobName}_\([0-9]\{8\}\)_%%" ${IGCM_TMP}/${$}.liste_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 140 | cat ${IGCM_TMP}/${$}.info_tmp.txt |grep "/" > ${IGCM_TMP}/${$}.info_tmp_bis.txt |
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| 141 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_restart_files_config.txt ${IGCM_TMP}/${$}.info_tmp_bis.txt > ${IGCM_TMP}/${$}.restart.tmp |
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| 142 | sort -k 2 ${IGCM_TMP}/${$}.restart.tmp > ${IGCM_TMP}/${$}.restart_bis.tmp |
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| 143 | mv ${IGCM_TMP}/${$}.restart_bis.tmp ${IGCM_DEM_SIMU}/liste_restart_files_config.txt |
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| 144 | # Sauvegarde des fichiers qui ne sont pas dans la norme |
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| 145 | cat ${IGCM_TMP}/${$}.info_tmp_bis.txt >> ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt |
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[1728] | 146 | mv ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt ${OTHER_TAR}/tar_no_restart_files.list |
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[1709] | 147 | |
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| 148 | |
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| 149 | sed -e "s%.*${JobName}_\([0-9]\{8\}\)_%%" ${IGCM_TMP}/${$}.liste_output_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 150 | cat ${IGCM_TMP}/${$}.info_tmp.txt |grep "/" > ${IGCM_TMP}/${$}.info_tmp_bis.txt |
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| 151 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.info_tmp_bis.txt > ${IGCM_TMP}/${$}.output.tmp |
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| 152 | sort -k 2 ${IGCM_TMP}/${$}.output.tmp > ${IGCM_TMP}/${$}.output_bis.tmp |
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| 153 | mv ${IGCM_TMP}/${$}.output_bis.tmp ${IGCM_DEM_SIMU}/liste_output_files_config.txt |
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| 154 | # Sauvegarde des fichiers qui ne sont pas dans la norme |
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| 155 | cat ${IGCM_TMP}/${$}.info_tmp_bis.txt >> ${IGCM_TMP}/${$}.liste_no_output_files_config.txt |
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[1728] | 156 | mv ${IGCM_TMP}/${$}.liste_no_output_files_config.txt ${OTHER_TAR}/tar_no_output_files.list |
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[1709] | 157 | |
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| 158 | |
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| 159 | # Recherche de DateBegin et DateEnd pour les Restarts |
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| 160 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
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| 161 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" ) |
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| 162 | DateBegin_Restart=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 163 | |
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| 164 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
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| 165 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" ) |
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| 166 | DateEnd_Restart=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 167 | |
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| 168 | # Recherche de DateBegin et DateEnd pour les Output |
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| 169 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_output_files_config.txt ) |
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| 170 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" ) |
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| 171 | DateBegin_Output=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 172 | |
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| 173 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_output_files_config.txt ) |
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| 174 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" ) |
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| 175 | DateEnd_Output=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 176 | |
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| 177 | DateBegin=${DateBegin_Restart} |
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| 178 | DateEnd=${DateEnd_Restart} |
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| 179 | |
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| 180 | DEM_log -2 "DateBegin DateEnd : ${DateBegin} ${DateEnd}" |
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| 181 | DEM_log -2 "DateBegin_Output DateEnd_Output : ${DateBegin_Output} ${DateEnd_Output}" |
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| 182 | DEM_log -2 "DateBegin_Restart DateEnd_Restart : ${DateBegin_Restart} ${DateEnd_Restart}" |
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| 183 | |
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| 184 | DateBegin=$( DEM_min ${DateBegin_Output} ${DateBegin} ) |
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| 185 | DateEnd=$( DEM_max ${DateEnd_Output} ${DateEnd} ) |
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| 186 | |
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| 187 | DEM_log -2 "DateBegin DateEnd : ${DateBegin} ${DateEnd}" |
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| 188 | |
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| 189 | [[ "${clean_tmp}" = "yes" ]] && rm -f ${IGCM_TMP}/${$}.config_name ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 190 | |
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| 191 | rm -f ${IGCM_DEM_SIMU}/config_card_${JobName} |
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| 192 | cat<<EOD>${IGCM_DEM_SIMU}/config_card_${JobName} |
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| 193 | JobName=${JobName} |
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| 194 | DateBegin=${DateBegin} |
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| 195 | DateEnd=${DateEnd} |
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| 196 | PATH_SIMUL_FULL=${PATH_SIMUL_FULL} |
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| 197 | IGCM_DEM_SIMU=${IGCM_DEM_SIMU} |
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| 198 | EOD |
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| 199 | |
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| 200 | echo "${IGCM_DEM_SIMU}/config_card_${JobName} ListToBeDone" >> ${IGCM_DEM}/config_card.liste |
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| 201 | |
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| 202 | DEM_log -1 "${IGCM_DEM_SIMU}/config_card_${JobName} ListToBeDone >> ${IGCM_DEM}/config_card.liste" |
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| 203 | |
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[1716] | 204 | |
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| 205 | #si la liste des fichiers d'output est vide on tar la simul |
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| 206 | if [[ ! -s ${IGCM_DEM_SIMU}/liste_output_files_config.txt ]]; then |
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| 207 | DEM_log -2 "liste output vide" |
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| 208 | ./write_liste_tar.sh ${IGCM_DEM_SIMU}/config_card_${JobName} |
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| 209 | fi |
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| 210 | |
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[1726] | 211 | # si les listes no_output et no_restart sont vides on les efface |
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[1728] | 212 | if [[ ! -s ${OTHER_TAR}/tar_no_output_files.list ]]; then |
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| 213 | rm -f ${OTHER_TAR}/tar_no_output_files.list |
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[1726] | 214 | fi |
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| 215 | |
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[1728] | 216 | if [[ ! -s ${OTHER_TAR}/tar_no_restart_files.list ]]; then |
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| 217 | rm -f ${OTHER_TAR}/tar_no_restart_files.list |
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[1726] | 218 | fi |
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| 219 | |
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| 220 | |
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[1709] | 221 | done |
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| 222 | |
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[1822] | 223 | # gpdebug : le script n'a pas rencontre d'erreur. On l'inscrit dans le fichier de suivi |
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| 224 | echo $MonitoringInfo >> $generalMonitorFile |
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| 225 | |
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[1709] | 226 | DEM_log -0 "Fin de ${SCRIPT_NAME}" |
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| 227 | |
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