[1709] | 1 | #!/bin/bash |
---|
| 2 | |
---|
| 3 | ## |
---|
| 4 | ## Job permettant de recreer une partie du config.card d'une simulation |
---|
| 5 | ## Champs vises : JobName / DateBegin / DateEnd / Calendar |
---|
| 6 | ## |
---|
| 7 | |
---|
| 8 | # Prend en argument un fichier contenant une liste de simulations |
---|
| 9 | # cree pour chacune son config.card |
---|
| 10 | # Ex : ./create_config_card.job liste_simul_fichier_param_test1.txt liste_fichier_dmnfs |
---|
| 11 | # Ex : ./create_config_card.job liste_simul_param_SL.txt /cscratch/cont003/labetoul/FROM_CCRT_INFORMATIONS_DMNFS/information_dmnfs_2012-03-21 |
---|
| 12 | |
---|
| 13 | |
---|
| 14 | LISTE_SIMUL=${1} |
---|
| 15 | LISTE_DMNFS=${2} |
---|
| 16 | |
---|
| 17 | # ---- |
---|
| 18 | export JOB_DIR=${JOB_DIR:-${PWD}} |
---|
| 19 | export IGCM_DEM=${IGCM_DEM:-${SCRATCHDIR}/IGCM_DEM} |
---|
| 20 | export IGCM_TMP=${IGCM_TMP:-${IGCM_DEM}/tmp} |
---|
| 21 | mkdir -p ${IGCM_DEM} |
---|
| 22 | mkdir -p ${IGCM_TMP} |
---|
| 23 | clean_tmp=${clean_tmp:-yes} |
---|
| 24 | EXE_DIR=$(dirname ${0}) |
---|
| 25 | SCRIPT_NAME=$(basename ${0} ) |
---|
| 26 | source ${EXE_DIR}/DEM_utilities.sh |
---|
| 27 | DEM_log -0 "Demarrage de ${SCRIPT_NAME}" |
---|
| 28 | cd ${JOB_DIR} |
---|
| 29 | # ---- |
---|
| 30 | |
---|
| 31 | DEM_log -0 "LISTE_SIMUL : ${LISTE_SIMUL}" |
---|
| 32 | DEM_log -0 "LISTE_DMNFS : ${LISTE_DMNFS}" |
---|
| 33 | |
---|
| 34 | [[ -f ${IGCM_DEM}/config_card.liste ]] && rm ${IGCM_DEM}/config_card.liste |
---|
| 35 | |
---|
| 36 | #ROOT_DIR=/dmnfs05/cont003/labetoul # soit DMFDIR, soit le tampon. a ameliorer ... |
---|
| 37 | |
---|
| 38 | |
---|
| 39 | cd ${JOB_DIR} |
---|
| 40 | |
---|
| 41 | for PATH_SIMUL_FULL in `awk '{print $0}' ${LISTE_SIMUL}` ; do |
---|
| 42 | |
---|
| 43 | DEM_log -3 PATH_SIMUL_FULL : ${PATH_SIMUL_FULL} |
---|
| 44 | #PATH_SIMUL_SHORT=${PATH_SIMUL_FULL##${ROOT_DIR}} # Enleve le debut du path |
---|
| 45 | PATH_SIMUL_SHORT=$(echo ${PATH_SIMUL_FULL} | sed 's%/[^/]*/[^/]*/[^/]*/%%' ) |
---|
| 46 | DEM_log -3 PATH_SIMUL_SHORT : ${PATH_SIMUL_SHORT} |
---|
| 47 | |
---|
| 48 | IGCM_DEM_SIMU=${IGCM_DEM}/${PATH_SIMUL_SHORT} |
---|
| 49 | mkdir -p ${IGCM_DEM_SIMU} |
---|
[1726] | 50 | rm -rf ${IGCM_DEM_SIMU}/* |
---|
| 51 | |
---|
| 52 | #creation du repertoire permettant de stocker |
---|
| 53 | #les listes de fichiers qui ne sont pas au format output ou restart |
---|
| 54 | #les listes de fichiers d'analyse, les monitos et les atlas |
---|
| 55 | OTHER_TAR=${IGCM_DEM_SIMU}/other_tar |
---|
| 56 | STORE_CP=${IGCM_DEM_SIMU}/store_cp |
---|
| 57 | WORK_CP=${IGCM_DEM_SIMU}/work_cp |
---|
| 58 | |
---|
| 59 | DEM_log -2 "creation des repertoires : $OTHER_TAR - $STORE_CP - $WORK_CP" |
---|
| 60 | |
---|
| 61 | mkdir -p ${OTHER_TAR} |
---|
| 62 | mkdir -p ${STORE_CP} |
---|
| 63 | mkdir -p ${WORK_CP} |
---|
| 64 | |
---|
| 65 | # on recherche le nom du job |
---|
[1709] | 66 | JobName="" |
---|
| 67 | |
---|
[1753] | 68 | # Etablir la liste des fichiers d'Analyse |
---|
| 69 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Analyse | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_analyse_files.list |
---|
| 70 | awk -F/ '{if ($(NF)=="Analyse") print $0} ' ${IGCM_TMP}/${$}.cp_analyse_files.list > ${STORE_CP}/cp_files.list |
---|
[1764] | 71 | rm -f ${IGCM_TMP}/${$}.cp_analyse_files.list |
---|
[1753] | 72 | |
---|
| 73 | #On recupere egalement le fichier mesh_mask si il existe |
---|
| 74 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep mesh_mask | awk '{print $3}' >> ${STORE_CP}/cp_files.list |
---|
| 75 | sed '/mesh_mask/d' ${LISTE_DMNFS} > ${IGCM_TMP}/${$}.Listing_tmp.txt; mv ${IGCM_TMP}/${$}.Listing_tmp.txt ${LISTE_DMNFS} |
---|
| 76 | |
---|
[1764] | 77 | #On copie aussi le contenu du repertoire Exe/ |
---|
| 78 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep -w Exe | awk '{print $3}' >> ${IGCM_TMP}/${$}.cp_analyse_files.list |
---|
| 79 | awk -F/ '{if ($(NF)=="Exe") print $0} ' ${IGCM_TMP}/${$}.cp_analyse_files.list >> ${STORE_CP}/cp_files.list |
---|
| 80 | |
---|
| 81 | |
---|
[1753] | 82 | # Etablir la liste des fichiers Monito et Atlas |
---|
| 83 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep MONITORING | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_monito_files.list |
---|
| 84 | awk -F/ '{if ($(NF)=="MONITORING") print $0} ' ${IGCM_TMP}/${$}.cp_monito_files.list > ${WORK_CP}/cp_files.list |
---|
| 85 | |
---|
| 86 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep ATLAS | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_atlas_files.list |
---|
| 87 | awk -F/ '{if ($(NF)=="ATLAS") print $0} ' ${IGCM_TMP}/${$}.cp_atlas_files.list >> ${WORK_CP}/cp_files.list |
---|
| 88 | |
---|
| 89 | |
---|
[1709] | 90 | # Etablir la liste des fichiers de restart |
---|
| 91 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Restart | awk '{print $2 " " $3}' | grep -e '.*/Restart/.*\..*' |grep -v "jnl" | sort >> ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
---|
| 92 | |
---|
| 93 | # Retirons de la liste les fichiers que l'on n'attends pas, en particulier si il y a des sous-repertoires au repetoire restart/ |
---|
| 94 | for file in `awk '{print $2}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt ` ; do |
---|
| 95 | dir=$( echo $file | sed -e "s%.*Restart/%%") |
---|
| 96 | testdir=$(dirname ${dir}) |
---|
| 97 | if [ $testdir != "." ]; then |
---|
| 98 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_restart_files_config.txt) >> ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt |
---|
| 99 | fi |
---|
| 100 | done |
---|
| 101 | if [ -f ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt ]; then |
---|
| 102 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_restart_files_config.txt ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
---|
| 103 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
---|
| 104 | fi |
---|
| 105 | |
---|
| 106 | # Etablir la liste des fichiers output |
---|
| 107 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Output | awk '{print $2 " " $3}' | grep -e '.*/Output/.*\.nc$' | sort >> ${IGCM_TMP}/${$}.liste_output_files_config.txt |
---|
| 108 | # Retirons de la liste les fichiers que l'on n'attends pas, en particulier si il y a des sous-repertoires aux repetoires Output/*/ |
---|
| 109 | for file in `awk '{print $2}' ${IGCM_TMP}/${$}.liste_output_files_config.txt ` ; do |
---|
[1716] | 110 | dir=$( echo $file | sed -e "s%.*Output/[^/]*/%%") |
---|
[1709] | 111 | testdir=$(dirname ${dir}) |
---|
| 112 | if [ $testdir != "." ]; then |
---|
| 113 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_output_files_config.txt ) >> ${IGCM_TMP}/${$}.liste_no_output_files_config.txt |
---|
| 114 | fi |
---|
| 115 | done |
---|
| 116 | if [ -f ${IGCM_TMP}/${$}.liste_no_output_files_config.txt ]; then |
---|
| 117 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.liste_no_output_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
---|
| 118 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_output_files_config.txt |
---|
| 119 | fi |
---|
| 120 | |
---|
[1726] | 121 | |
---|
| 122 | |
---|
[1736] | 123 | |
---|
[1709] | 124 | # Lecture du nom du job |
---|
| 125 | JobName=`awk -F/ '{if (NR==1) print $(NF-3)}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt` |
---|
| 126 | DEM_log -2 JobName ${JobName} |
---|
| 127 | |
---|
[1716] | 128 | |
---|
[1709] | 129 | # Maintenant que nous avons JobName verifions que tous les fichiers de restart/Output sont bien du type JobName_date_* |
---|
| 130 | sed -e "s%.*${JobName}_\([0-9]\{8\}\)_%%" ${IGCM_TMP}/${$}.liste_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
---|
| 131 | cat ${IGCM_TMP}/${$}.info_tmp.txt |grep "/" > ${IGCM_TMP}/${$}.info_tmp_bis.txt |
---|
| 132 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_restart_files_config.txt ${IGCM_TMP}/${$}.info_tmp_bis.txt > ${IGCM_TMP}/${$}.restart.tmp |
---|
| 133 | sort -k 2 ${IGCM_TMP}/${$}.restart.tmp > ${IGCM_TMP}/${$}.restart_bis.tmp |
---|
| 134 | mv ${IGCM_TMP}/${$}.restart_bis.tmp ${IGCM_DEM_SIMU}/liste_restart_files_config.txt |
---|
| 135 | # Sauvegarde des fichiers qui ne sont pas dans la norme |
---|
| 136 | cat ${IGCM_TMP}/${$}.info_tmp_bis.txt >> ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt |
---|
[1728] | 137 | mv ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt ${OTHER_TAR}/tar_no_restart_files.list |
---|
[1709] | 138 | |
---|
| 139 | |
---|
| 140 | sed -e "s%.*${JobName}_\([0-9]\{8\}\)_%%" ${IGCM_TMP}/${$}.liste_output_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
---|
| 141 | cat ${IGCM_TMP}/${$}.info_tmp.txt |grep "/" > ${IGCM_TMP}/${$}.info_tmp_bis.txt |
---|
| 142 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.info_tmp_bis.txt > ${IGCM_TMP}/${$}.output.tmp |
---|
| 143 | sort -k 2 ${IGCM_TMP}/${$}.output.tmp > ${IGCM_TMP}/${$}.output_bis.tmp |
---|
| 144 | mv ${IGCM_TMP}/${$}.output_bis.tmp ${IGCM_DEM_SIMU}/liste_output_files_config.txt |
---|
| 145 | # Sauvegarde des fichiers qui ne sont pas dans la norme |
---|
| 146 | cat ${IGCM_TMP}/${$}.info_tmp_bis.txt >> ${IGCM_TMP}/${$}.liste_no_output_files_config.txt |
---|
[1728] | 147 | mv ${IGCM_TMP}/${$}.liste_no_output_files_config.txt ${OTHER_TAR}/tar_no_output_files.list |
---|
[1709] | 148 | |
---|
| 149 | |
---|
| 150 | # Recherche de DateBegin et DateEnd pour les Restarts |
---|
| 151 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
---|
| 152 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" ) |
---|
| 153 | DateBegin_Restart=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
---|
| 154 | |
---|
| 155 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
---|
| 156 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" ) |
---|
| 157 | DateEnd_Restart=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
---|
| 158 | |
---|
| 159 | # Recherche de DateBegin et DateEnd pour les Output |
---|
| 160 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_output_files_config.txt ) |
---|
| 161 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" ) |
---|
| 162 | DateBegin_Output=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
---|
| 163 | |
---|
| 164 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_output_files_config.txt ) |
---|
| 165 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" ) |
---|
| 166 | DateEnd_Output=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
---|
| 167 | |
---|
| 168 | DateBegin=${DateBegin_Restart} |
---|
| 169 | DateEnd=${DateEnd_Restart} |
---|
| 170 | |
---|
| 171 | DEM_log -2 "DateBegin DateEnd : ${DateBegin} ${DateEnd}" |
---|
| 172 | DEM_log -2 "DateBegin_Output DateEnd_Output : ${DateBegin_Output} ${DateEnd_Output}" |
---|
| 173 | DEM_log -2 "DateBegin_Restart DateEnd_Restart : ${DateBegin_Restart} ${DateEnd_Restart}" |
---|
| 174 | |
---|
| 175 | DateBegin=$( DEM_min ${DateBegin_Output} ${DateBegin} ) |
---|
| 176 | DateEnd=$( DEM_max ${DateEnd_Output} ${DateEnd} ) |
---|
| 177 | |
---|
| 178 | DEM_log -2 "DateBegin DateEnd : ${DateBegin} ${DateEnd}" |
---|
| 179 | |
---|
| 180 | [[ "${clean_tmp}" = "yes" ]] && rm -f ${IGCM_TMP}/${$}.config_name ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
---|
| 181 | |
---|
| 182 | rm -f ${IGCM_DEM_SIMU}/config_card_${JobName} |
---|
| 183 | cat<<EOD>${IGCM_DEM_SIMU}/config_card_${JobName} |
---|
| 184 | JobName=${JobName} |
---|
| 185 | DateBegin=${DateBegin} |
---|
| 186 | DateEnd=${DateEnd} |
---|
| 187 | PATH_SIMUL_FULL=${PATH_SIMUL_FULL} |
---|
| 188 | IGCM_DEM_SIMU=${IGCM_DEM_SIMU} |
---|
| 189 | EOD |
---|
| 190 | |
---|
| 191 | echo "${IGCM_DEM_SIMU}/config_card_${JobName} ListToBeDone" >> ${IGCM_DEM}/config_card.liste |
---|
| 192 | |
---|
| 193 | DEM_log -1 "${IGCM_DEM_SIMU}/config_card_${JobName} ListToBeDone >> ${IGCM_DEM}/config_card.liste" |
---|
| 194 | |
---|
[1716] | 195 | |
---|
| 196 | #si la liste des fichiers d'output est vide on tar la simul |
---|
| 197 | if [[ ! -s ${IGCM_DEM_SIMU}/liste_output_files_config.txt ]]; then |
---|
| 198 | DEM_log -2 "liste output vide" |
---|
| 199 | ./write_liste_tar.sh ${IGCM_DEM_SIMU}/config_card_${JobName} |
---|
| 200 | fi |
---|
| 201 | |
---|
[1726] | 202 | # si les listes no_output et no_restart sont vides on les efface |
---|
[1728] | 203 | if [[ ! -s ${OTHER_TAR}/tar_no_output_files.list ]]; then |
---|
| 204 | rm -f ${OTHER_TAR}/tar_no_output_files.list |
---|
[1726] | 205 | fi |
---|
| 206 | |
---|
[1728] | 207 | if [[ ! -s ${OTHER_TAR}/tar_no_restart_files.list ]]; then |
---|
| 208 | rm -f ${OTHER_TAR}/tar_no_restart_files.list |
---|
[1726] | 209 | fi |
---|
| 210 | |
---|
| 211 | |
---|
[1709] | 212 | done |
---|
| 213 | |
---|
| 214 | DEM_log -0 "Fin de ${SCRIPT_NAME}" |
---|
| 215 | |
---|