source: TOOLS/MOSAIX/CreateWeightsMask.bash @ 4089

Last change on this file since 4089 was 4088, checked in by omamce, 6 years ago

O.M. : cosmetic on CreateWeights?
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1#!/bin/bash
2#MSUB -r WeightsMask        # Job name
3#MSUB -o Out_WeightsMask    # Standard output
4#MSUB -e Out_WeightsMask    # Error output
5#MSUB -eo
6#MSUB -n 8                  # Number of processors
7#MSUB -T 1800               # Time limit (seconds)
8#MSUB -q skylake
9#MSUB -Q test
10#MSUB -p gen2212
11#MSUB -m work
12
13### ===========================================================================
14###
15### Creates interpolation weights between ORCA and atmosphere grids.
16### Interpolates ORCA mask to atmosphere grid.
17### Weight files are at OASIS-MCT format.
18###
19### Atmosphere grid may be lon/lat LMDZ or DYNAMICO icosahedron
20###
21### Documentation : https://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM6/MOSAIX
22### ===========================================================================
23##
24##  Warning, to install, configure, run, use any of Olivier Marti's
25##  software or to read the associated documentation you'll need at least
26##  one (1) brain in a reasonably working order. Lack of this implement
27##  will void any warranties (either express or implied).
28##  O. Marti assumes no responsability for errors, omissions,
29##  data loss, or any other consequences caused directly or indirectly by
30##  the usage of his software by incorrectly or partially configured
31##  personal.
32##
33## SVN information
34#  $Author$
35#  $Date$
36#  $Revision$
37#  $Id$
38#  $HeadURL$
39export Bold=$(tput bold) 
40export Unde=$(tput smul) ; export OffUnde=$(tput rmul)
41export Stou=$(tput smso) ; export OffStou=$(tput rmso)
42export Reve=$(tput rev ) 
43couleurs=( "Black" "Blue" "Green" "Cyan" "Red" "Magenta" "Yellow" "White" )
44for i in $(seq 0 7 ) ; do eval "export ${couleurs[$i]}=$(tput setf $i)" ; done
45export Norm=$(tput sgr0 )
46
47##
48## Configuration
49## ===========================================================================
50
51#
52# Defines models
53# ==============
54OCE=ORCA2.3
55#OCE=eORCA1.2
56#OCE=ORCA025
57
58ATM=ICO30
59#ATM=ICO40
60#ATM=ICO450
61#ATM=LMD9695
62#ATM=LMD144X142
63
64#
65# Defines OCE grids to handle
66# ===========================
67ListOCEGRID="T U V"
68ListOrder="1st 2nd"
69ListNormalize="false true"
70ListQuantity="true false"
71
72## ===========================================================================
73##
74## You should not change anything below this line ....
75##
76## ===========================================================================
77SUBMIT_DIR=$(pwd)
78
79#
80# Defines computer
81# ================
82if [[ $(hostname) = curie*    ]] ; then arch=curie ; center=tgcc ; fi
83if [[ $(hostname) = irene*    ]] ; then arch=irene ; center=tgcc ; fi
84if [[ $(hostname) = lsce3005* ]] ; then arch=spip  ; center=spip ; fi
85
86PROGRAM=$(basename ${0})
87
88case ${arch} in
89    ( curie )
90    set +vx
91    module purge
92    source /ccc/cont003/home/dsm/p86ipsl/.env_intel17.0.2_curie;
93    source /ccc/cont003/home/dsm/p86ipsl/.env_netcdf4.3.3.1_curie
94    module load datadir/igcmg
95    R_IN=$(ccc_home -u igcmg --cccwork)/IGCM
96    TMPDIR=${SCRATCHDIR}/TMP
97    SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR}}
98    PROGRAM=${BRIDGE_MSUB_REQNAME}
99    MPIRUN=ccc_mprun
100    ;;
101    ( irene )
102    set +vx
103    module purge
104    source $(ccc_home -u igcmg)/MachineEnvironment/irene/env_irene
105    module load python/2.7.8
106    module load datadir/igcmg
107    R_IN=$(ccc_home -u igcmg --cccwork)/IGCM
108    TMPDIR=${CCCWORKDIR}/TMP
109    SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR}}
110    PROGRAM=${BRIDGE_MSUB_REQNAME}
111    MPIRUN=ccc_mprun
112    module list
113    ;;
114    ( spip )
115    R_IN=${HOME}/Scratch/IGCM
116    TMPDIR=${HOME}/Scratch/TMP
117    SUBMIT_DIR=$(pwd)
118    MPIRUN=/opt/local/bin/mpirun-openmpi-gcc49 -n 2
119    ;;
120    ( * ) exit -1 ;;
121esac
122
123set -x ; set -e
124
125mkdir -p ${TMPDIR}/${OCE}x${ATM} || exit 1
126cd       ${TMPDIR}/${OCE}x${ATM} || exit 1
127rm -f *
128
129#
130# Suffixes
131# ---------------------------------------------------------------------------
132Listocegrid=${ListOCEGRID,,}
133
134case ${OCE} in
135    ( *ORC* )         oce=orc ; oce_domain_type=curvilinear   ;;
136esac
137case ${ATM} in
138    ( *dynamico*    ) atm=ico ; atm_domain_type=unstructured  ;;
139    ( *ICO*         ) atm=ico ; atm_domain_type=unstructured  ;;
140    ( *lmd* | *LMD* ) atm=lmd ; atm_domain_type=rectilinear   ;;
141esac
142
143case ${OCE} in
144    ( ORCA2.3*         ) OcePerio=4 ;;
145    ( ORCA1* | eORCA1* ) OcePerio=6 ;;
146    ( ORCA025*         ) OcePerio=6 ;;
147esac
148#
149# Format for OASIS files : should be NetCDF3 classic or NetCDF3 64 bits
150# ---------------------------------------------------------------------------
151FMT_OASIS=64bit
152FMT_XIOS=netcdf4
153
154cp ${SUBMIT_DIR}/bin/interpol.exe    .
155cp ${SUBMIT_DIR}/*.py                .
156
157cp ${R_IN}/OCE/NEMO/${OCE}/${OCE}_coordinates_mask.nc  .
158cp ${R_IN}/ATM/GRID/${ATM}_grid.nc .
159
160ncks --overwrite --fl_fmt=${FMT_OASIS} --history ${OCE}_coordinates_mask.nc ${OCE}_coordinates_mask_${FMT_OASIS}.nc
161ncks --overwrite --fl_fmt=${FMT_OASIS} --history ${ATM}_grid.nc                    ${ATM}_grid_${FMT_OASIS}.nc
162#
163# Creates OCEAN C grid : redundant point removed to compute proper integrals # A passer dans CreateWeights
164# --------------------------------------------------------------------------------------------------------
165cat <<EOF >add_c_grid.nco
166defdim("x_grid_C", \$x_grid_T.size) ;
167defdim("y_grid_C", \$y_grid_T.size) ;
168defdim("nvertex_grid_C",  4)         ;
169nav_lon_grid_C[y_grid_C,x_grid_C]    = nav_lon_grid_T(:,:)    ;
170nav_lat_grid_C[y_grid_C,x_grid_C]    = nav_lat_grid_T(:,:)    ;
171bounds_lon_grid_C[y_grid_C,x_grid_C,nvertex_grid_C] = bounds_lon_grid_T(:,:,:) ;
172bounds_lat_grid_C[y_grid_C,x_grid_C,nvertex_grid_C] = bounds_lat_grid_T(:,:,:) ;
173mask_C[y_grid_C,x_grid_C]            = maskutil_T(:,:)        ;
174area_grid_C[y_grid_C,x_grid_C]       = area_grid_T(:,:)       ;
175EOF
176
177ncap2 --overwrite --history --script-file add_c_grid.nco ${OCE}_coordinates_mask.nc tmp_${OCE}_coordinates_mask.nc
178ncatted --history --attribute bounds,nav_lon_grid_C,m,c,"bounds_lon_grid_C" tmp_${OCE}_coordinates_mask.nc
179ncatted --history --attribute bounds,nav_lat_grid_C,m,c,"bounds_lat_grid_C" tmp_${OCE}_coordinates_mask.nc
180ncks --history --overwrite --variable nav_lon_grid_C,nav_lat_grid_C       tmp_${OCE}_coordinates_mask.nc C_${OCE}_coordinates_mask.nc
181ncks --history --append    --variable bounds_lon_grid_C,bounds_lat_grid_C tmp_${OCE}_coordinates_mask.nc C_${OCE}_coordinates_mask.nc
182ncks --history --append    --variable area_grid_C             tmp_${OCE}_coordinates_mask.nc C_${OCE}_coordinates_mask.nc
183
184ncks --history --append C_${OCE}_coordinates_mask.nc            ${OCE}_coordinates_mask.nc
185rm C_${OCE}_coordinates_mask.nc
186
187ncks --history --overwrite --fl_fmt=${FMT_OASIS} ${OCE}_coordinates_mask.nc ${OCE}_coordinates_mask_${FMT_OASIS}.nc
188
189ls -al
190
191##
192## NEMO T point towards ATM - 1st order
193## ===========================================================================
194echo ${Green}"Initial case - ${OCE} T toward ${ATM} - 1stOrder - UnNormalized - Surfacic"${Norm}
195cp ${SUBMIT_DIR}/iodef_oce_to_atm.xml   iodef.xml
196Suffix=1stOrder_UnNormalized_Surfacic
197
198python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]'   -k name  -v maskutil_T
199python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]'                   -k type  -v ${oce_domain_type}
200python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]'                   -k type  -v ${atm_domain_type}
201python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name  -v maskutil_T
202python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]'                               -k name  -v dia_t${oce}_to_t${atm}_${Suffix}
203python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]'       -t "${OCE} mask interpolated to ${ATM}"
204python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${oce_domain_type}
205python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]'   -t ${atm_domain_type}
206python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]'       -t 1
207python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]'                    -k type  -v ${oce_domain_type}
208python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]'                    -k type  -v ${atm_domain_type}
209python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_t${oce}_to_t${atm}_${Suffix}.nc
210python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1
211python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t false
212python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]'      -t false
213python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain'   -k renormalize -v false
214python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain'   -k quantity    -v false
215
216cp iodef.xml iodef_t${oce}_to_t${atm}_${Suffix}.xml
217ln -fs ${OCE}_coordinates_mask.nc  oce_grid.nc
218ln -fs ${ATM}_grid.nc              atm_grid.nc
219
220time /usr/bin/time ${MPIRUN} ./interpol.exe --mask_src=yes --mask_dst=no
221##
222## Correct spurious values (extremes)
223## ===========================================================================
224cat <<EOF > correction_masque.nco
225where (OceFrac <   0.00001 )  OceFrac=OceFrac.get_miss() ;
226where (OceFrac >   0.99999 )  OceFrac=1.0 ;
227OceFrac.delete_miss() ;
228// Fill masked values to land values
229where (OceFrac >  1.0 )  OceFrac=0.0 ;
230where (OceFrac <  0.0 )  OceFrac=0.0 ;
231EOF
232ncap2 --history --overwrite --script-file correction_masque.nco dia_t${oce}_to_t${atm}_${Suffix}.nc tmp_dia_t${oce}_to_t${atm}_${Suffix}.nc ; mv tmp_dia_t${oce}_to_t${atm}_${Suffix}.nc dia_t${oce}_to_t${atm}_${Suffix}.nc
233ncatted --history -a missing_value,OceFrac,d,,"" -a _FillValue,OceFrac,d,,"" dia_t${oce}_to_t${atm}_${Suffix}.nc
234
235##
236##  Creates mask on ATM grid
237## ===========================================================================
238cp dia_t${oce}_to_t${atm}_${Suffix}.nc  dia_t${oce}_to_t${atm}_${Suffix}_mask.nc
239ncks --alphabetize --history --overwrite --variable OceFrac dia_t${oce}_to_t${atm}_${Suffix}_mask.nc  ${ATM}_grid_maskFrom_${OCE}.nc
240
241cat <<EOF > creation_masque.nco
242where (OceFrac >  0.0 )  OceFrac=1 ;
243where (OceFrac <= 0.0 )  OceFrac=0 ;
244EOF
245
246ncap2 --history --overwrite --script-file creation_masque.nco dia_t${oce}_to_t${atm}_${Suffix}_mask.nc tmp_dia_t${oce}_to_t${atm}_${Suffix}_mask.nc ; mv tmp_dia_t${oce}_to_t${atm}_${Suffix}_mask.nc dia_t${oce}_to_t${atm}_${Suffix}_mask.nc
247ncrename --history --variable OceFrac,OceMask dia_t${oce}_to_t${atm}_${Suffix}_mask.nc
248
249ncks --overwrite --history --variable OceMask dia_t${oce}_to_t${atm}_${Suffix}_mask.nc tmp_OceMask.nc
250ncks --history --append tmp_OceMask.nc ${ATM}_grid_maskFrom_${OCE}.nc
251rm dia_t${oce}_to_t${atm}_${Suffix}_mask.nc
252
253# Change dimension names, and some attributes accordingly
254if [[ $(ncdump -h ${ATM}_grid_maskFrom_${OCE}.nc | grep domain_dst | wc -l) -gt 0 ]] ; then
255    case ${atm} in
256        ( *ico* ) 
257        ncrename --history --dimension cell_domain_dst,cell              ${ATM}_grid_maskFrom_${OCE}.nc
258        ncrename --history --dimension nvertex_domain_dst,nvertex        ${ATM}_grid_maskFrom_${OCE}.nc
259        ncrename --history --variable  lat_domain_dst,lat                ${ATM}_grid_maskFrom_${OCE}.nc
260        ncrename --history --variable  lon_domain_dst,lon                ${ATM}_grid_maskFrom_${OCE}.nc
261        ncrename --history --variable  bounds_lat_domain_dst,bounds_lat  ${ATM}_grid_maskFrom_${OCE}.nc
262        ncrename --history --variable  bounds_lon_domain_dst,bounds_lon  ${ATM}_grid_maskFrom_${OCE}.nc
263        ncatted  --history --attribute bounds,lat,m,c,"bounds_lat"       ${ATM}_grid_maskFrom_${OCE}.nc
264        ncatted  --history --attribute bounds,lon,m,c,"bounds_lon"       ${ATM}_grid_maskFrom_${OCE}.nc
265        ;;
266        ( *lmd* ) 
267        ncrename --history --dimension lon_domain_dst,lon            ${ATM}_grid_maskFrom_${OCE}.nc
268        ncrename --history --dimension lat_domain_dst,lat            ${ATM}_grid_maskFrom_${OCE}.nc
269        ;;
270    esac
271    ncatted  --history --attribute coordinates,OceFrac,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc
272    ncatted  --history --attribute coordinates,OceMask,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc
273 
274fi
275
276ncks --history --alphabetize  --append    --variable aire    atm_grid.nc                                   ${ATM}_grid_maskFrom_${OCE}.nc
277[[ ${atm} = *ico* ]] && ncks --alphabetize --history --append --variable bounds_lon,bounds_lat atm_grid.nc ${ATM}_grid_maskFrom_${OCE}.nc
278
279
280##
281## NEMO, other case, towards ATM
282## ===========================================================================
283for order in ${ListOrder} ; do
284    case ${order} in
285        ( 1st ) num_order=1 ;;
286        ( 2nd ) num_order=2 ;;
287    esac
288    for normalize in ${ListNormalize} ; do
289        for quantity in ${ListQuantity} ; do
290            for OCEGRID in ${ListOCEGRID} ; do
291                ocegrid=${OCEGRID,,}
292               
293                case ${normalize} in
294                    ( true )  NormName=Normalized  ;;
295                    ( false ) NormName=UnNormalized ;;
296                esac
297                case ${quantity} in
298                    ( true )  QuantName=Integrated ;;
299                    ( false ) QuantName=Surfacic ;;
300                esac
301               
302                Suffix=${order}Order_${NormName}_${QuantName}
303               
304                if [[ ! -f rmp_${ocegrid}${oce}_to_t${atm}_${Suffix}.nc ]] ; then
305                   
306                    echo ${Green}"${OCE} ${OCEGRID} toward ${ATM} - ${order}Order - normalize: ${normalize} - quantity: ${quantity}"${Norm}
307                   
308                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]'     -k name  -v maskutil_${OCEGRID}
309                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]'                     -k type  -v ${oce_domain_type}
310                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]'                     -k type  -v ${atm_domain_type}
311                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]'   -k name  -v maskutil_${OCEGRID}
312                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]'                                 -k name  -v dia_${ocegrid}${oce}_to_t${atm}_${Suffix}
313                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]'         -t "${OCE} mask interpolated to ${ATM}"
314                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]'   -t ${oce_domain_type}
315                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]'     -t ${atm_domain_type}
316                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]'         -t ${num_order}
317                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t ${normalize}
318                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]'      -t ${quantity}
319                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]'                      -k type  -v ${oce_domain_type}
320                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]'                      -k type  -v ${atm_domain_type}
321                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain'   -k order -v ${num_order}
322                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_${ocegrid}${oce}_to_t${atm}_${Suffix}.nc
323                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize     -v ${normalize}
324                    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity        -v ${quantity}
325                   
326                    cp iodef.xml iodef_${ocegrid}${oce}_t${atm}_${Suffix}.xml
327                   
328                    ln -fs ${OCE}_coordinates_mask.nc  oce_grid.nc
329                    ln -fs ${ATM}_grid.nc              atm_grid.nc
330                    time /usr/bin/time ${MPIRUN} ./interpol.exe --mask_src=yes --mask_dst=yes
331                fi
332               
333            done
334        done
335    done
336done
337##
338## ATM towards NEMO points
339## ===========================================================================
340cp ${SUBMIT_DIR}/iodef_atm_to_oce.xml           iodef.xml
341
342python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]'                   -k type  -v ${atm_domain_type}
343python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]'                   -k type  -v ${oce_domain_type}
344python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]'       -t "${ATM} mask interpolated to ${OCE}"
345python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${atm_domain_type}
346python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]'   -t ${oce_domain_type}
347python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]'                    -k type  -v ${atm_domain_type}
348python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]'                    -k type  -v ${oce_domain_type}
349           
350for order in ${ListOrder} ; do
351    case ${order} in
352        ( 1st ) num_order=1 ;;
353        ( 2nd ) num_order=2 ;;
354    esac
355    for normalize in ${ListNormalize} ; do
356        for quantity in ${ListQuantity} ; do
357            case ${normalize} in
358                ( true )  NormName=Normalized  ;;
359                ( false ) NormName=UnNormalized ;;
360            esac
361            case ${quantity} in
362                ( true )  QuantName=Integrated ;;
363                ( false ) QuantName=Surfacic ;;
364            esac
365           
366            Suffix=${order}Order_${NormName}_${QuantName}
367           
368            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain'   -k order -v ${num_order}
369            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]'         -t ${num_order}   
370            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t ${normalize}
371            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]'      -t ${quantity}
372            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain'   -k renormalize     -v ${normalize}
373            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain'   -k quantity        -v ${quantity}
374           
375            for OCEGRID in ${ListOCEGRID} ; do
376                ocegrid=${OCEGRID,,}
377               
378                echo ${Green}"${ATM} toward ${OCE} ${OCEGRID} - ${order}Order - normalize: ${normalize} - quantity: ${quantity}"${Norm}
379                python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]'   -k name  -v mask_${OCEGRID}
380                python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="mask_dest"]'   -k name  -v mask_${OCEGRID}
381                python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]'                               -k name  -v dia_t${atm}_to_${ocegrid}${oce}_${Suffix}
382                python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_t${atm}_to_${ocegrid}${oce}_${Suffix}.nc
383                cp iodef.xml iodef_t${atm}_to_${ocegrid}${oce}_${Suffix}.xml
384               
385                ln -fs ${OCE}_coordinates_mask.nc  oce_grid.nc
386                ln -fs ${ATM}_grid.nc              atm_grid.nc
387                time /usr/bin/time ${MPIRUN} ./interpol.exe --mask_src=yes --mask_dst=yes
388               
389            done
390        done
391    done
392done
393##
394## Creates mask of coastal OCE points
395## ===========================================================================
396python ComputeNemoCoast.py -n ${OcePerio} -i ${OCE}_coordinates_mask.nc # Creates OceCoastal
397##
398## Creates mask of coastal ATM points
399## ===========================================================================
400cat <<EOF > coastal.nco
401AtmCoastal = OceFrac * 0.0 ;
402where (OceFrac > 0.0 && OceFrac < 1.0 )  AtmCoastal = 1.0 ;
403EOF
404ncap2 --history --overwrite --script-file coastal.nco ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_coastal_maskFrom_${OCE}.nc
405cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n07.nc
406ncks --history --append --variable AtmCoastal ${ATM}_coastal_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
407cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n08.nc
408rm ${ATM}_coastal_maskFrom_${OCE}.nc
409ncks --alphabetize --history --overwrite --fl_fmt=${FMT_OASIS} ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc
410cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n09.nc
411
412##
413## ATM towards NEMO points - runoff
414## ===========================================================================
415cp ${SUBMIT_DIR}/iodef_atm_to_oce.xml           iodef.xml
416for normalize in ${ListNormalize} ; do
417    for quantity in ${ListQuantity} ; do
418        case ${normalize} in
419            ( true )  NormName=Normalized  ;;
420            ( false ) NormName=UnNormalized ;;
421        esac
422        case ${quantity} in
423            ( true )  QuantName=Integrated ;;
424            ( false ) QuantName=Surfacic ;;
425        esac
426       
427        Suffix=${order}Order_${NormName}_${QuantName}
428       
429        python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]'                   -k type  -v ${atm_domain_type}
430        python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]'                   -k type  -v ${oce_domain_type}
431        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]'       -t "${ATM} coastal mask interpolated to ${OCE}"
432        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${atm_domain_type}
433        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]'   -t ${oce_domain_type}
434        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]'                    -k type  -v ${atm_domain_type}
435        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]'                    -k type  -v ${oce_domain_type}
436        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1
437        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]'       -t 1
438        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t ${normalize}
439        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]'    -t ${quantity}
440        python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]'                         -k name  -v ${ATM}_grid_maskFrom_${OCE}
441        python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]'   -k name  -v AtmCoastal
442        python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]'   -k name  -v OceCoastal
443        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]'                               -k name  -v dia_o${atm}_to_c${oce}_${Suffix}
444        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_o${atm}_to_c${oce}_${Suffix}.nc
445        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize     -v ${normalize}
446        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity        -v ${quantity}
447       
448        cp iodef.xml iodef_o${atm}_to_c${oce}_${Suffix}.xml
449       
450        ln -fs ${OCE}_coordinates_mask.nc  oce_grid.nc
451        ln -fs ${ATM}_grid.nc              atm_grid.nc
452        time /usr/bin/time ${MPIRUN} ./interpol.exe --mask_src=yes --mask_dst=yes
453       
454        # Now we should divide weight par source (atm) grid area : run-off is a quantity/s integrated on the grid mox, not a flux
455    done
456done
457    ##
458## Copy all NetCDF files to NetCDF 3 format (needed for OASIS)
459## ===========================================================================
460for InFile in *.nc ; do
461    OuFile=$(basename ${InFile} .nc)_${FMT_OASIS}.nc
462    if [[ ! -f ${OuFile} ]] ; then
463        ncks --alphabetize --history --fl_fmt=${FMT_OASIS} ${InFile} ${OuFile}
464    fi
465done
466
467##
468## Add time axis and coordinates information
469## (needed if files need to be read by XIOS)
470## ===========================================================================
471#ncatted --history -a coordinates,aire,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc
472ncap2 --overwrite --history --script 'defdim("time_counter",1) ;' ${ATM}_grid_maskFrom_${OCE}.nc tmp_${ATM}_grid_maskFrom_${OCE}.nc ; mv tmp_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
473cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n10.nc
474
475ncks --alphabetize --history --overwrite --fl_fmt=${FMT_OASIS} ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc
476
477if [[ ${atm} = ico ]] ; then
478    cat <<EOF > add_time.nco
479OceFrac    [time_counter,cell] = OceFrac    [cell] ;
480OceMask    [time_counter,cell] = OceMask    [cell] ;
481AtmCoastal [time_counter,cell] = AtmCoastal [cell] ;
482EOF
483    ncap2 --overwrite --history --script-file add_time.nco ${ATM}_grid_maskFrom_${OCE}.nc tmp_${ATM}_grid_maskFrom_${OCE}.nc ; mv tmp_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
484    cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n11.nc
485    ncatted --history \
486            -a coordinates,OceFrac,m,c,"time_counter lat lon"    \
487            -a coordinates,OceMask,m,c,"time_counter lat lon"    \
488            -a coordinates,AtmCoastal,m,c,"time_counter lat lon" \
489            -a coordinates,aire,c,c,"lat lon" \
490            ${ATM}_grid_maskFrom_${OCE}.nc
491    cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n12.nc
492fi
493ncks --alphabetize --history --overwrite --fl_fmt=${FMT_OASIS} ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc
494
495if [[ ${atm} = lmd ]] ; then
496    cat <<EOF > add_time.nco
497OceFrac    [time_counter,lat,lon] = OceFrac    [lat,lon] ;
498OceMask    [time_counter,lat,lon] = OceMask    [lat,lon]  ;
499AtmCoastal [time_counter,lat,lon] = AtmCoastal [lat,lon]  ;
500EOF
501    ncap2 --overwrite --history --script-file add_time.nco ${ATM}_grid_maskFrom_${OCE}.nc tmp_${ATM}_grid_maskFrom_${OCE}.nc
502    ncdump -h tmp_${ATM}_grid_maskFrom_${OCE}.nc
503    mv tmp_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
504    cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n13.nc
505   
506    ncatted --history \
507            -a coordinates,OceFrac,m,c,"time_counter lat lon"    \
508            -a coordinates,OceMask,m,c,"time_counter lat lon"    \
509            -a coordinates,AtmCoastal,m,c,"time_counter lat lon" \
510            -a coordinates,aire,m,c,"lat lon" \
511            ${ATM}_grid_maskFrom_${OCE}.nc
512    cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n14.nc
513fi
514ncks --alphabetize --history --overwrite --mk_rec time_counter   ${ATM}_grid_maskFrom_${OCE}.nc tmp_${ATM}_grid_maskFrom_${OCE}.nc ; mv tmp_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
515cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n15.nc
516ncks --alphabetize --history --overwrite --fl_fmt=${FMT_OASIS} ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc
517cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n16.nc
518
519##
520## Add some metadata in file headers
521## ===========================================================================
522
523UUID=$(uuid)
524NCO="$(ncks --version |& tail -1|sed 's/ncks //')"
525PYTHON_VER=$( python -i -c "import sys ; print (sys.version.split(' ')[0])" )
526for InFile in *${oce}_to_*${atm}_*.nc *${atm}_to_*${oce}_*.nc ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc; do
527    ncatted --history \
528            --attribute uuid,global,d,,                                           \
529            --attribute LongName,global,d,,                                       \
530            --attribute nco_openmp_thread_number,global,d,,                       \
531            --attribute Conventions,global,o,c,"CF-1.6"                           \
532            --attribute source,global,o,c,"IPSL Earth system model"               \
533            --attribute group,global,o,c,"ICMC IPSL Climate Modelling Center"     \
534            --attribute Institution,global,o,c,"IPSL https://www.ipsl.fr"         \
535            --attribute Ocean,global,o,c,"${OCE} https://www.nemo-ocean.eu"       \
536            --attribute Atmosphere,global,o,c,"${ATM} http://lmdz.lmd.jussieu.fr" \
537            --attribute production,global,o,c,"$(finger ${LOGNAME} | head -1 | awk '{print $4, $5}') " \
538            --attribute originalFiles,global,o,c,"${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc"      \
539            --attribute associatedFiles,global,o,c,"grids_${OCE}x${ATM}.nc areas_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc" \
540            --attribute directory,global,o,c,"$(pwd)"                             \
541            --attribute description,global,o,c,"Fields needed by OASIS-MCT"       \
542            --attribute title,global,o,c,"${InFile}.nc"                           \
543            --attribute Program,global,o,c,"Generated by ${PROGRAM}"              \
544            --attribute timeStamp,global,o,c,"$(date)"                            \
545            --attribute uuid,global,o,c,"${UUID}"                                 \
546            --attribute HOSTNAME,global,o,c,"$(hostname)"                         \
547            --attribute LOGNAME,global,o,c,"$(whoami)"                            \
548            --attribute NCO,global,o,c,"NCO netCDF Operator ${NCO} http://nco.sourceforge.net" \
549            --attribute Python,global,o,c,"Python version ${PYTHON_VER}"          \
550            --attribute OS,global,o,c,"$(uname -o)"                               \
551            --attribute release,global,o,c,"$(uname -r)"                          \
552            --attribute hardware,global,o,c,"$(uname -i)"                         \
553            --attribute directory,global,o,c,"$(pwd)"                             \
554            --attribute description,global,o,c,"Generated with XIOS http://forge.ipsl.jussieu.fr/ioserver and MOSAIX https://forge.ipsl.jussieu.fr/igcmg/browser/TOOLS/MOSAIX" \
555            --attribute Comment,global,o,c,"Preliminary attempt - Do not trust !" \
556            --attribute SVN_Author,global,o,c,"$Author$"                 \
557            --attribute SVN_Date,global,o,c,"$Date$"                            \
558            --attribute SVN_Revision,global,o,c,"$Revision$"               \
559            --attribute SVN_Id,global,o,c,"$Id$"                                \
560            ${InFile}
561done
562cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_n20.nc
563##
564## Update and complete weights file to fit OASIS requested format
565## ===========================================================================
566cat <<EOF > add_dim.nco
567defdim("num_wgts",1) ;
568weight[n_weight, num_wgts] = weight ;
569EOF
570
571for rmpFile in rmp_*.nc ; do
572    mv ${rmpFile} xios_${rmpFile}
573    ncap2 --fl_fmt=${FMT_OASIS} --history --script-file add_dim.nco xios_${rmpFile} ${rmpFile}
574   
575    ncrename --history --dimension n_weight,num_links   ${rmpFile}
576    ncrename --history --variable  src_idx,src_address  ${rmpFile}
577    ncrename --history --variable  dst_idx,dst_address  ${rmpFile}
578    ncrename --history --variable  weight,remap_matrix  ${rmpFile}
579    case ${rmpFile} in
580        ( *1storder* ) ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order"  ${rmpFile} ;;
581        ( *2ndorder* ) ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 2nd order"  ${rmpFile} ;;
582    esac
583    case ${rmpFile} in
584        ( *_Normalized*   ) ncatted --history --attribute map_method,global,o,c,"Normalization: true"  ${rmpFile} ;;
585        ( *_UnNormalized* ) ncatted --history --attribute map_method,global,o,c,"Normalization: false" ${rmpFile} ;;
586    esac
587    case ${rmpFile} in
588        ( *Integrated*   ) ncatted --history --attribute map_method,global,o,c,"Quantity: true"  ${rmpFile} ;;
589        ( *Surfacic*     ) ncatted --history --attribute map_method,global,o,c,"Quantity: false" ${rmpFile} ;;
590    esac
591    ncatted --history --attribute conventions,global,o,c,"SCRIP"   ${rmpFile}
592    ncatted --history --attribute normalization,global,o,c,"none"  ${rmpFile}
593   
594    case ${rmpFile} in
595        ( rmp_*${oce}_to_t${atm}_* )
596        ncatted --history \
597                --attribute title,global,o,c,"Weights ${OCE} to ${ATM}" \
598                --attribute source_grid,global,o,c,"${oce_domain_type}" \
599                --attribute dest_grid,global,o,c,"${atm_domain_type}"   \
600                ${rmpFile}     
601        ;;
602        ( rmp_*${atm}_to_*${oce}_* )
603        ncatted --history \
604                --attribute title,global,o,c,"Weights ${ATM} to ${OCE}" \
605                --attribute source_grid,global,o,c,"${atm_domain_type}" \
606                --attribute dest_grid,global,o,c,"${oce_domain_type}"   \
607                ${rmpFile}
608        ;;
609    esac
610done
611
612##
613## Add missing variables in rmp files
614## ===========================================================================
615for rmpFile in rmp_?${atm}_to_[tuv]${oce}_*.nc rmp_[tuv]${oce}_to_t${atm}_*.nc* ; do
616    echo ${rmpFile}
617    a_to_o=false ; o_to_a=false
618    case ${rmpFile} in
619        (  rmp_?${oce}_to_?${atm}_*.nc ) o_to_a=true ;;
620        (  rmp_?${atm}_to_?${oce}_*.nc ) a_to_o=true ;;
621    esac
622
623    for Grid in t u v o c ; do # Identify grids
624        [[ ${rmpFile} = rmp_${Grid}${oce}_to_?${atm}_*.nc ]] && ogrid=${Grid}
625        [[ ${rmpFile} = rmp_?${oce}_to_${Grid}${atm}_*.nc ]] && agrid=${Grid}
626        [[ ${rmpFile} = rmp_${Grid}${atm}_to_?${oce}_*.nc ]] && agrid=${Grid}
627        [[ ${rmpFile} = rmp_?${atm}_to_${Grid}${oce}_*.nc ]] && ogrid=${Grid}
628    done
629    OGRID=${ogrid^}
630    AGRID=${agrid^}
631       
632    cat <<EOF >add_varoce.nco
633defdim ("src_grid_size"   , \$x_grid_${OGRID}.size*\$y_grid_${OGRID}.size) ;
634defdim ("src_grid_corners", 4) ;
635defdim ("src_grid_rank"   , 2) ;
636//
637src_grid_dims[src_grid_rank] = { \$y_grid_${OGRID}.size, \$x_grid_${OGRID}.size } ;
638//
639src_grid_center_lat [src_grid_size] =  0.0d ;
640src_grid_center_lon [src_grid_size] =  0.0d ;
641src_grid_center_lat (:) = nav_lat_grid_${OGRID}(:,:)   ;
642src_grid_center_lon (:) = nav_lon_grid_${OGRID}(:,:)   ;
643//
644src_grid_corner_lat [src_grid_size, src_grid_corners] = 0.0d ;
645src_grid_corner_lon [src_grid_size, src_grid_corners] = 0.0d ;
646src_grid_corner_lat(:,:) = bounds_lat_grid_${OGRID}(:,:,:) ;
647src_grid_corner_lon(:,:) = bounds_lon_grid_${OGRID}(:,:,:) ;
648//
649src_grid_imask [src_grid_size] =    0 ;
650src_grid_area  [src_grid_size] = 0.0d ;
651src_grid_frac  [src_grid_size] = 1.0d ;
652src_grid_imask (:) = 1 - mask_${OGRID}(:,:) ;
653src_grid_imask.int() ;
654src_grid_area  (:) = area_grid_${OGRID}(:,:) ;
655EOF
656
657    [[ ${o_to_a} = true ]] && ncap2 --history --append --script-file add_varoce.nco ${OCE}_coordinates_mask_${FMT_OASIS}.nc ${rmpFile}
658    sed --in-place "s/src_/dst_/g" add_varoce.nco
659    [[ ${a_to_o} = true ]] && ncap2 --history --append --script-file add_varoce.nco ${OCE}_coordinates_mask_${FMT_OASIS}.nc ${rmpFile}
660               
661    if [[ ${atm} = ico ]] ; then
662        cat <<EOF >add_varatm.nco
663defdim ("dst_grid_size"   , \$cell.size) ;
664defdim ("dst_grid_corners", 6) ;
665defdim ("dst_grid_rank"   , 2) ;
666//
667dst_grid_dims[dst_grid_rank] = { \$cell.size, 1 } ;
668//
669dst_grid_center_lat [dst_grid_size] =  0.0d ;
670dst_grid_center_lon [dst_grid_size] =  0.0d ;
671dst_grid_center_lat (:) = lat(:)   ;
672dst_grid_center_lon (:) = lon(:)   ;
673//
674dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ;
675dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ;
676dst_grid_corner_lat(:,:) = bounds_lat(:,:) ;
677dst_grid_corner_lon(:,:) = bounds_lon(:,:) ;
678//
679dst_grid_imask [dst_grid_size] =    0 ;
680dst_grid_area  [dst_grid_size] = 0.0d ;
681dst_grid_frac  [dst_grid_size] = 1.0d ;
682dst_grid_imask (:) = 1 - OceMask(0,:) ;
683dst_grid_imask.int() ;
684dst_grid_area  (:) = aire(:) ;
685dst_grid_frac  (:) = OceFrac(0,:) ;
686EOF
687        if [[ ${o_to_a} = true ]] ; then
688            ncap2 --history --append --script-file add_varatm.nco ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc ${rmpFile}
689            ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
690            mv rmp_tmp.nc ${rmpFile}
691        fi
692                   
693        sed --in-place "s/dst_/src_/g" add_varatm.nco
694        if [[ ${a_to_o} = true ]] ; then
695            ncap2 --history --append --script-file add_varatm.nco ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc ${rmpFile}
696            ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
697            mv rmp_tmp.nc ${rmpFile}
698        fi
699    fi
700   
701    if [[ ${atm} = lmd ]] ; then
702        cat <<EOF >add_varatm.nco
703defdim ("dst_grid_size"   , \$lon.size*\$lat.size) ;
704defdim ("dst_grid_corners", 4) ;
705defdim ("dst_grid_rank"   , 2) ;
706//
707dst_grid_dims[dst_grid_rank] = { \$lat.size, \$lon.size } ;
708//
709dst_grid_center_lat [dst_grid_size] =  0.0d ;
710dst_grid_center_lon [dst_grid_size] =  0.0d ;
711lat0lon[lat,lon] = lat(:)+0*lon(:) ;
712lon0lat[lat,lon] = lon(:)+0*lat(:) ;
713dst_grid_center_lat (:) = lat0lon(:,:)   ;
714dst_grid_center_lon (:) = lon0lat(:,:)   ;
715//
716//dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ; // Not available for LMDZ lon/lat grid
717//dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ;
718//dst_grid_corner_lat(:,:) = bounds_lat(:,:) ;
719//dst_grid_corner_lon(:,:) = bounds_lon(:,:) ;
720//
721dst_grid_imask [dst_grid_size] =    0 ;
722dst_grid_area  [dst_grid_size] = 0.0d ;
723dst_grid_frac  [dst_grid_size] = 1.0d ;
724dst_grid_imask (:) = 1 - OceMask(0,:,:) ;
725dst_grid_imask.int() ;
726dst_grid_area  (:) = aire(:,:) ;
727dst_grid_frac (:)  = OceFrac(0,:,:) ;
728EOF
729        if [[ ${o_to_a} = true ]] ; then
730            ncap2 --history --append --script-file add_varatm.nco ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc ${rmpFile}
731            ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
732            mv rmp_tmp.nc ${rmpFile}
733        fi
734       
735        sed --in-place "s/dst/src/g" add_varatm.nco
736        if [[ ${a_to_o} = true ]] ; then
737            ncap2 --history --append --script-file add_varatm.nco ${ATM}_grid_maskFrom_${OCE}_${FMT_OASIS}.nc ${rmpFile}
738            ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
739            mv rmp_tmp.nc ${rmpFile}
740        fi
741    fi
742done
743ls -al ${OCE}_coordinates_mask.nc
744##
745## Save results
746## ===========================================================================
747cp ${ATM}_grid_maskFrom_${OCE}.nc ${SUBMIT_DIR}
748for File in dia_*.nc rmp_*.nc
749do
750    ncatted --history --attribute history_of_appended_files,global,d,c,"" ${File}
751    NewFile=$(echo ${File} | sed -e "s/${atm}/${ATM}/" -e "s/${oce}/${OCE}/" )
752    cp ${File} ${SUBMIT_DIR}/${NewFile}
753done
754
755##
756## Creates and save auxiliary files for OASIS
757## ===========================================================================
758bash ${SUBMIT_DIR}/CreateOasisGrids.bash --oce ${OCE} --atm ${ATM}
759
760cp areas_${OCE}x${ATM}.nc ${SUBMIT_DIR}
761cp grids_${OCE}x${ATM}.nc ${SUBMIT_DIR}
762cp masks_${OCE}x${ATM}.nc ${SUBMIT_DIR}
763
764
765## ===========================================================================
766##
767##                               That's all folk's !!!
768##
769## ===========================================================================
770
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