[5158] | 1 | #!/bin/bash |
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[3719] | 2 | #MSUB -r WeightsMask # Job name |
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| 3 | #MSUB -o Out_WeightsMask # Standard output |
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| 4 | #MSUB -e Out_WeightsMask # Error output |
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[4402] | 5 | #MSUB -n 4 # Number of processors |
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[6045] | 6 | #MSUB -T 7200 # Time limit (seconds) |
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| 7 | #MSUB -Q normal |
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[3966] | 8 | #MSUB -q skylake |
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[6045] | 9 | #MSUB -p devcmip6 |
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| 10 | #MSUB -m work,store,scratch |
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[3620] | 11 | |
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| 12 | ### =========================================================================== |
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| 13 | ### |
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[3719] | 14 | ### Creates interpolation weights between ORCA and atmosphere grids. |
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[3620] | 15 | ### Interpolates ORCA mask to atmosphere grid. |
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| 16 | ### Weight files are at OASIS-MCT format. |
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| 17 | ### |
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| 18 | ### Atmosphere grid may be lon/lat LMDZ or DYNAMICO icosahedron |
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[3627] | 19 | ### |
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| 20 | ### Documentation : https://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM6/MOSAIX |
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[3620] | 21 | ### =========================================================================== |
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| 22 | ## |
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| 23 | ## Warning, to install, configure, run, use any of Olivier Marti's |
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| 24 | ## software or to read the associated documentation you'll need at least |
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| 25 | ## one (1) brain in a reasonably working order. Lack of this implement |
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| 26 | ## will void any warranties (either express or implied). |
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| 27 | ## O. Marti assumes no responsability for errors, omissions, |
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| 28 | ## data loss, or any other consequences caused directly or indirectly by |
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| 29 | ## the usage of his software by incorrectly or partially configured |
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| 30 | ## personal. |
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| 31 | ## |
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[3623] | 32 | ## SVN information |
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[3665] | 33 | # $Author$ |
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| 34 | # $Date$ |
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| 35 | # $Revision$ |
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| 36 | # $Id$ |
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[3632] | 37 | # $HeadURL$ |
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[4090] | 38 | # |
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[4317] | 39 | # CplModel=eORCA1.2xLMD144142 ; qsub -r ${CplModel} -o Out_${CplModel} -e Out_${CplModel} CreateWeightsMask.bash |
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| 40 | # CplModel=ORCA2.3xLMD9695 |
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| 41 | # CplModel=ORCA2.3xICO30 |
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| 42 | # CplModel=ORCA2.3xICO40 |
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| 43 | # CplModel=eORCA1.2xICO40 |
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[4320] | 44 | # CplModel=eORCA1.2xICO450 |
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[4317] | 45 | # CplModel=eORCA1.2xLMD256256 |
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[4320] | 46 | # CplModel=eORCA025.1xLMD144142 |
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[4317] | 47 | # CplModel=eORCA025.1xLMD256256 |
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[4195] | 48 | # |
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| 49 | |
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[4172] | 50 | set +vx |
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[3901] | 51 | export Bold=$(tput bold) |
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| 52 | export Unde=$(tput smul) ; export OffUnde=$(tput rmul) |
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| 53 | export Stou=$(tput smso) ; export OffStou=$(tput rmso) |
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| 54 | export Reve=$(tput rev ) |
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| 55 | couleurs=( "Black" "Blue" "Green" "Cyan" "Red" "Magenta" "Yellow" "White" ) |
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[4259] | 56 | for i in $(seq 0 7) ; do eval "export ${couleurs[$i]}=$(tput setf ${i})" ; done |
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[4186] | 57 | export Norm=$(tput sgr0) |
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[4172] | 58 | export Titre=${Bold}${Blue} |
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[3620] | 59 | |
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| 60 | ## |
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| 61 | ## Configuration |
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| 62 | ## =========================================================================== |
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[4159] | 63 | set -e |
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[5158] | 64 | echo BASH Version ${BASH_VERSION} |
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| 65 | echo SHELL ${SHELL} |
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[3620] | 66 | |
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| 67 | # |
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[4317] | 68 | echo ${Titre}"Defines model"${Norm} |
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| 69 | # ================================= |
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[6064] | 70 | #CplModel=ORCA2.3xLMD9695 |
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| 71 | CplModel=ORCA2.3xICO30 |
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[4317] | 72 | #CplModel=ORCA2.3xICO40 |
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[5925] | 73 | #CplModel=eORCA1.2xLMD144142 |
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[4317] | 74 | #CplModel=eORCA1.2xLMD256256 |
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| 75 | #CplModel=eORCA1.2xICO40 |
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| 76 | #CplModel=eORCA1.2xICO450 |
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| 77 | #CplModel=eORCA025.1xLMD256256 |
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[3620] | 78 | |
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[4402] | 79 | #Version="v0" ; Comment="Fully tested in IPSLCM6 eORCA1.2 x LMD 144x142" |
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[6045] | 80 | #Version="v1" ; Comment="Fully tested in IPSLCM6 eORCA1.2 x LMD 144x142" |
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[6064] | 81 | #Version="NoSearchRadius" ; Comment="For testing new routing" |
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| 82 | Version="v2" ; Comment="Correction of ORCA masks to have a perfect conservation of run-off" |
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[3620] | 83 | |
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[4317] | 84 | # If available, get model name from job name |
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[4195] | 85 | if [[ X${SLURM_JOB_NAME} = X*ORC* || X${SLURM_JOB_NAME} = X*LMD* || X${SLURM_JOB_NAME} = X*ICO* ]] ; then |
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[4317] | 86 | CplModel=${SLURM_JOB_NAME} ; |
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[4195] | 87 | fi |
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[4317] | 88 | OCE=${CplModel//x*} ; ATM=${CplModel##*x} |
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[4195] | 89 | |
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[4186] | 90 | echo ${Titre}"ATM model : ${ATM}"${Norm} |
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| 91 | echo ${Titre}"OCE model : ${OCE}"${Norm} |
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[4195] | 92 | echo ${Titre}"Cpl model : ${CplModel}"${Norm} |
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[5548] | 93 | echo ${Titre}"Version : ${Version}"${Norm} |
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[4172] | 94 | |
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[4186] | 95 | # Runoff parameter. atmCoastWidth and oceCoastWidth in grid points, searchRadius in km |
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[4402] | 96 | atmCoastWidth=2 ; oceCoastWidth=2 ; searchRadius=550.0 |
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[4298] | 97 | runOff_atmQuantity=Quantity ; runOff_oceQuantity=Surfacic |
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[4172] | 98 | |
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[4402] | 99 | # Specific cases |
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[4298] | 100 | [[ ${ATM} = ICO* ]] && atmCoastWidth=0 # Parameter relevant for LMD rectilinear grid only |
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| 101 | [[ ${ATM} = LMD* ]] && atmCoastWidth=2 |
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[5548] | 102 | [[ ${OCE} = ORCA2.* ]] && oceCoastWidth=1 |
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| 103 | [[ ${OCE} = eORCA1.* ]] && oceCoastWidth=2 |
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[4298] | 104 | [[ ${OCE} = eORCA025* ]] && oceCoastWidth=1 |
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[4186] | 105 | |
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[4402] | 106 | # More specific cases |
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[6064] | 107 | [[ ${CplModel} = eORCA1.2xLMD144142 ]] && { atmCoastWidth=2 ; oceCoastWidth=2 ; searchRadius=550.0 ; } |
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[4402] | 108 | |
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[6045] | 109 | if [[ ${CplModel} = eORCA1.2xLMD144142 && Version = "NoSearchRadius" ]] ; then |
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| 110 | atmCoastWidth=2 ; oceCoastWidth=2 ; searchRadius=0.0 |
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| 111 | fi |
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| 112 | |
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[4153] | 113 | # Default values, used to create ocean fraction on atmospheric grid |
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[4186] | 114 | DefaultValues=( Direction=o2a,oceGrid=t,atmGrid=t,Order=1st,Quantity=false,Renormalize=false,useArea=false,maskSrc=true,maskDst=false,Name=OceFrac ) |
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[3620] | 115 | |
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[4172] | 116 | ## List of weights to build |
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| 117 | ## ==================================================================================================================================== |
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| 118 | # |
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| 119 | # Each item in CommandList describes the properties of interpolation weights to generate. |
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[4159] | 120 | # White spaces separate analysis. No spaces in any analysis. |
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| 121 | # |
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[4172] | 122 | # Specific commands : 'Runoff', 'Calving' |
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| 123 | # |
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[4159] | 124 | # Keywords : |
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[4298] | 125 | # Direction : o2a for ocean to atmosphere, a2o for atmosphere to ocean. |
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| 126 | # Order : 1st or 2nd. |
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[4159] | 127 | # Quantity : true if integrated quantity over a grid box, false for flux (quantity / m^2) |
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[4298] | 128 | # or intensive value (temperature, salinity, sea-ice fraction, ...). |
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| 129 | # Renormalize : used when source grid is masked, to use values on non masked points only. |
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| 130 | # oceGrid : t, u or v point for NEMO C grid. |
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| 131 | # atmGrid : up to know, only t grid used in the atmosphere. |
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| 132 | # useArea : if true area from the model metrics is used. If false, areas are computed by XIOS from grid corners. |
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| 133 | # maskSrc : true to use the source grid mask, false to used all grid points. |
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| 134 | # maskDst : true to use the destination grid mask, false to use all grid points. |
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[4159] | 135 | # |
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[4259] | 136 | ## Classic cases for IPSLCM6 |
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| 137 | AtmOceFluxes=" Direction=a2o,Order=1st,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=HeatWaterFluxes" # Heat and water fluxes |
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[4320] | 138 | OceAtmTemp=" Direction=o2a,Order=1st,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=TempIceAlb" # Temperature, sea-ice fraction, albedo |
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| 139 | OceAtmTemp2nd=" Direction=o2a,Order=2nd,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=TempIceAlb" # Temperature, sea-ice fraction, albedo |
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| 140 | AtmOceStressU=" Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=u,useArea=true,maskSrc=true,maskDst=true,Name=WindStress" # Wind stress to NEMO U point |
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| 141 | AtmOceStressV=" Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=v,useArea=true,maskSrc=true,maskDst=true,Name=WindStress" # Wind stress to NEMO V point |
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| 142 | AtmOceQuantity=" Direction=a2o,Order=1st,Quantity=true,Renormalize=false,atmGrid=t,oceGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=Quantity" # e.g. runoff |
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[4298] | 143 | # For new parameterization |
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| 144 | AtmOceTemp=" Direction=o2a,Order=1st,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=OceTemp" # e.g. T and S correction from DWL parametrization |
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[4259] | 145 | OceAtmFluxes=" Direction=o2a,Order=1st,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=OceAtmFluxes" # e.g. CO2 fluxes |
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[4298] | 146 | # Test to do with 2nd order |
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| 147 | AtmOceFluxes2nd="Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=HeatWaterFluxes" # Heat and water fluxes |
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[4259] | 148 | OceAtmFluxes2nd="Direction=o2a,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=OceAtmFluxes" # e.g. CO2 fluxes |
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[4317] | 149 | AtmOceTemp2nd=" Direction=o2a,Order=2nd,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=OceTemp" # e.g. T and S correction from DWL parametrization |
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[4159] | 150 | |
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[4259] | 151 | ## Creates the list |
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| 152 | |
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[4186] | 153 | # Standard list for IPSLCM6 |
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| 154 | #CommandList=( ${AtmOceFluxes} ${OceAtmTemp} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} Runoff Calving Grids ) |
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[4172] | 155 | |
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[4259] | 156 | # More comprehensive list for IPSLCM6 with new features |
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[4317] | 157 | #CommandList=( ${AtmOceFluxes} ${OceAtmTemp} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} ${AtmOceTemp} Runoff Calving Grids ) |
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[4172] | 158 | |
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[4259] | 159 | # With 2nd order |
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[4317] | 160 | CommandList=( ${AtmOceFluxes} ${AtmOceFluxes2nd} ${OceAtmTemp} ${OceAtmTemp2nd} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} ${OceAtmFluxes2nd} ${AtmOceTemp} ${AtmOceTemp2nd} Runoff Calving Grids ) |
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[4259] | 161 | |
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[4186] | 162 | # Debugs |
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| 163 | #CommandList=( ${AtmOceFluxes} ${OceAtmTemp} Runoff Calving Grids ) |
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[4199] | 164 | #CommandList=( ${AtmOceFluxes} Runoff Calving Grids ) |
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[4317] | 165 | #CommandList=( ${AtmOceFluxes} ${OceAtmTemp} ) |
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[4320] | 166 | #CommandList=( ${AtmOceFluxes} ) |
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[4259] | 167 | #CommandList=( Runoff ) |
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| 168 | #CommandList=( Runoff Calving Grids ) |
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[4186] | 169 | #CommandList=( Calving ) |
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| 170 | #CommandList=( Grids ) |
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[4172] | 171 | |
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[4402] | 172 | if [[ ${Version} = test_runoff_* ]] ; then |
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| 173 | CommandList=( Runoff ) |
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| 174 | fi |
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| 175 | |
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[3620] | 176 | ## =========================================================================== |
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| 177 | ## |
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| 178 | ## You should not change anything below this line .... |
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| 179 | ## |
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| 180 | ## =========================================================================== |
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[6064] | 181 | #Tag="MOSAIX" |
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[3620] | 182 | SUBMIT_DIR=$(pwd) |
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[4259] | 183 | FMT_XIOS=netcdf4 |
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[4159] | 184 | |
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| 185 | # Functions to handle command parameters |
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| 186 | # ====================================== |
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[4153] | 187 | function read_Command { |
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| 188 | # Decipher the command line to set bash variables |
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| 189 | local l_Debug="no" l_Element |
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| 190 | while [[ ${1} = -* ]] ; do |
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| 191 | case ${1} in |
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| 192 | ( -- ) shift ; break ;; |
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| 193 | ( -d | --debug ) l_Debug="true" ; shift ;; |
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| 194 | esac |
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| 195 | done |
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| 196 | local l_Command=${1} |
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[4159] | 197 | for l_Element in $(echo ${l_Command} | tr "," "\n" ) ; do |
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[4153] | 198 | [[ "X${l_Debug}" = "Xtrue" ]] && echo ${l_Element} |
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| 199 | eval export ${l_Element} |
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| 200 | done |
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| 201 | } |
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[3620] | 202 | |
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[4153] | 203 | function setValues { |
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[4317] | 204 | # Set default values |
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[4186] | 205 | read_Command "Direction=None,Order=None,Quantity=None,Renormalize=None,atmGrid=None,oceGrid=None,useArea=None,maskSrc=None,maskDst=None" |
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[4317] | 206 | # Read command line |
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[4186] | 207 | read_Command ${1} |
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| 208 | # |
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[4317] | 209 | oceGrid=${oceGrid,,} ; atmGrid=${atmGrid,,} # Model names to lower case |
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| 210 | OCEGRID=${oceGrid^^} ; ATMGRID=${atmGrid^^} # Model names to upper case |
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[4153] | 211 | |
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| 212 | case ${Order} in |
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| 213 | ( 1st ) numOrder=1 ;; |
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| 214 | ( 2nd ) numOrder=2 ;; |
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| 215 | esac |
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| 216 | case ${Renormalize} in |
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| 217 | ( true ) NormName=Normalized ;; |
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| 218 | ( false ) NormName=UnNormalized ;; |
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| 219 | esac |
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| 220 | case ${Quantity} in |
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| 221 | ( true ) QuantName=Integrated ;; |
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| 222 | ( false ) QuantName=Surfacic ;; |
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| 223 | esac |
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| 224 | case ${useArea} in |
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| 225 | ( true ) AreaName=Area ;; |
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| 226 | ( false ) AreaName=NoArea ;; |
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| 227 | esac |
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| 228 | |
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[4186] | 229 | if [[ "${Name}" != "None" ]] ; then |
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[4259] | 230 | FullName=${Name}_${Order}Order |
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[4186] | 231 | else |
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[4199] | 232 | FullName=${Order}Order_${NormName}_${QuantName}_${AreaName} |
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[4186] | 233 | fi |
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| 234 | |
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[4153] | 235 | case ${Direction} in |
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| 236 | ( o2a ) |
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[4159] | 237 | src=${oce} ; SRC=${OCE} ; srcGrid=${oceGrid} ; srcDomainType=${oceDomainType} ; SRCGRID=${OCEGRID} ; srcArea=area_grid_${OCEGRID} |
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| 238 | dst=${atm} ; DST=${ATM} ; dstGrid=${atmGrid} ; dstDomainType=${atmDomainType} ; DSTGRID=${ATMGRID} ; dstArea=aire |
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[4153] | 239 | ;; |
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| 240 | ( a2o ) |
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[4159] | 241 | src=${atm} ; SRC=${ATM} ; srcGrid=${atmGrid} ; srcDomainType=${atmDomainType} ; SRCGRID=${ATMGRID} ; srcArea=aire |
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| 242 | dst=${oce} ; DST=${OCE} ; dstGrid=${oceGrid} ; dstDomainType=${oceDomainType} ; DSTGRID=${OCEGRID} ; dstArea=area_grid_${OCEGRID} |
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[4153] | 243 | ;; |
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| 244 | esac |
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[4186] | 245 | echo ${Green}"${SRC} ${SRCGRID} toward ${DST} ${DSTGRID} - ${Order} Order - Normalize: ${Renormalize} - Quantity: ${QuantName} - Area: ${AreaName} "${Norm} |
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[4199] | 246 | echo ${Green}"FullName : ${FullName}"${Norm} |
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[4153] | 247 | } |
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[4186] | 248 | |
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[3620] | 249 | # |
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[6045] | 250 | # Defines computer |
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[3620] | 251 | # ================ |
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[3901] | 252 | if [[ $(hostname) = irene* ]] ; then arch=irene ; center=tgcc ; fi |
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[4153] | 253 | if [[ $(hostname) = lsce* ]] ; then arch=spip ; center=spip ; fi |
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[3734] | 254 | |
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[3620] | 255 | case ${arch} in |
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[4153] | 256 | ( irene ) |
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[3620] | 257 | set +vx |
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[4259] | 258 | set +e |
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[3966] | 259 | R_IN=$(ccc_home -u igcmg --cccwork)/IGCM |
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| 260 | TMPDIR=${CCCWORKDIR}/TMP |
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| 261 | SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR}} |
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[4172] | 262 | MpiRun="time ccc_mprun" |
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[4195] | 263 | PyRun="time ccc_mprun -n 1" # Needed to force python to run on one process only |
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[6045] | 264 | module purge |
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[4153] | 265 | source ${SUBMIT_DIR}/arch.env |
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[6045] | 266 | module load nco/4.9.2 |
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[4172] | 267 | module load python3 |
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[4153] | 268 | module load datadir/igcmg |
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[3966] | 269 | module list |
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[4259] | 270 | set -e |
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[3966] | 271 | ;; |
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[3734] | 272 | ( spip ) |
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| 273 | R_IN=${HOME}/Scratch/IGCM |
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| 274 | TMPDIR=${HOME}/Scratch/TMP |
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| 275 | SUBMIT_DIR=$(pwd) |
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[4172] | 276 | MpiRun="/opt/local/bin/mpirun -n 4" |
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| 277 | PyRun="time" |
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[3734] | 278 | ;; |
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[3901] | 279 | ( * ) exit -1 ;; |
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[3620] | 280 | esac |
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| 281 | |
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| 282 | set -x ; set -e |
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| 283 | |
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[4195] | 284 | mkdir -p ${TMPDIR}/${CplModel} || exit 1 |
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[6045] | 285 | cd ${TMPDIR}/${CplModel} || exit 2 |
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[4146] | 286 | rm -fr * |
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[3620] | 287 | |
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| 288 | # |
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| 289 | # Suffixes |
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| 290 | # --------------------------------------------------------------------------- |
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| 291 | |
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| 292 | case ${OCE} in |
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[4153] | 293 | ( *ORC* ) oce=orc ; oceDomainType=curvilinear ;; |
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[3620] | 294 | esac |
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[4159] | 295 | |
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[3620] | 296 | case ${ATM} in |
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[4153] | 297 | ( *dynamico* ) atm=ico ; atmDomainType=unstructured ;; |
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| 298 | ( *ICO* ) atm=ico ; atmDomainType=unstructured ;; |
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| 299 | ( *lmd* | *LMD* ) atm=lmd ; atmDomainType=rectilinear ;; |
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[3620] | 300 | esac |
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| 301 | |
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[4159] | 302 | case ${OCE} in # Periodicity type of ORCA grid |
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[5926] | 303 | ( ORCA2* ) OcePerio=4 ;; # 4 ORCA 6 PALEORCA |
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[4172] | 304 | ( ORCA1* | eORCA1* ) OcePerio=6 ;; |
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[4298] | 305 | ( ORCA025* | eORCA025* ) OcePerio=6 ;; |
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[3723] | 306 | esac |
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[3620] | 307 | # |
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| 308 | |
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[4195] | 309 | cp ${SUBMIT_DIR}/bin/interpol.exe . |
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| 310 | cp ${SUBMIT_DIR}/*.py . |
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[4153] | 311 | cp ${SUBMIT_DIR}/iodef_atm_to_oce.xml . |
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| 312 | cp ${SUBMIT_DIR}/iodef_oce_to_atm.xml . |
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[3620] | 313 | |
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[5926] | 314 | cp ${R_IN}/OCE/NEMO/${OCE}/${OCE}_coordinates_mask.nc . |
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[3639] | 315 | cp ${R_IN}/ATM/GRID/${ATM}_grid.nc . |
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[3620] | 316 | |
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[4317] | 317 | # Soucis a corriger plus tard |
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| 318 | if [[ ${ATM} = LMD9695 ]] ; then |
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| 319 | cat <<EOF > toDouble.nco |
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| 320 | lat = double (lat) ; |
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| 321 | lon = double (lon) ; |
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| 322 | aire = double (aire) ; |
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| 323 | fract_oce = double (fract_oce) ; |
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| 324 | fract_sic = double (fract_sic) ; |
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| 325 | fract_oce_plus_sic = double (fract_oce_plus_sic) ; |
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| 326 | EOF |
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| 327 | ncap2 --history --overwrite --script-file toDouble.nco ${ATM}_grid.nc tmp_${ATM}_grid.nc |
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| 328 | mv tmp_${ATM}_grid.nc ${ATM}_grid.nc |
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| 329 | fi |
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[3620] | 330 | |
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[3912] | 331 | |
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[3901] | 332 | ## |
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[4172] | 333 | echo ${Titre}"NEMO T point towards ATM - 1st order"${Norm} |
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[3901] | 334 | ## =========================================================================== |
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[4153] | 335 | echo "Command parameters : ${Command}" |
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[4186] | 336 | setValues ${DefaultValues} |
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[3620] | 337 | |
---|
[4320] | 338 | OutFileName=${srcGrid}${src}_to_${dstGrid}${dst}_${FullName} |
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| 339 | |
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[4153] | 340 | cp iodef_oce_to_atm.xml iodef.xml |
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| 341 | |
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[4172] | 342 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v maskutil_T |
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| 343 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="area_src"]' -k name -v area_grid_T |
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| 344 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType} |
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| 345 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType} |
---|
| 346 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1 |
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| 347 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v false |
---|
| 348 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v false |
---|
| 349 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v false |
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| 350 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v maskutil_T |
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| 351 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v area_grid_T |
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[4320] | 352 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]' -k name -v dia_${OutFileName} |
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[4172] | 353 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]' -t "${SRC} mask interpolated to ${DST}" |
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| 354 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${srcDomainType} |
---|
| 355 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]' -t ${dstDomainType} |
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| 356 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]' -t 1 |
---|
| 357 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType} |
---|
| 358 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType} |
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[4320] | 359 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_${OutFileName}.nc |
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[4172] | 360 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1 |
---|
| 361 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t false |
---|
| 362 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]' -t false |
---|
| 363 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="use_area"]' -t false |
---|
| 364 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v false |
---|
| 365 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v false |
---|
| 366 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v false |
---|
[3620] | 367 | |
---|
[4320] | 368 | cp iodef.xml iodef_${OutFileName}.xml |
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[3901] | 369 | ln -fs ${OCE}_coordinates_mask.nc oce_grid.nc |
---|
| 370 | ln -fs ${ATM}_grid.nc atm_grid.nc |
---|
[3620] | 371 | |
---|
[4172] | 372 | ${MpiRun} ./interpol.exe --mask_src=${maskSrc} --mask_dst=${maskDst} --use_area=${useArea} |
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| 373 | |
---|
[4320] | 374 | ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" rmp_${OutFileName}.nc |
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| 375 | ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" dia_${OutFileName}.nc |
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| 376 | |
---|
| 377 | ncatted --history --attribute normalization,global,o,c,"false" rmp_${OutFileName}.nc |
---|
| 378 | ncatted --history --attribute normalization,global,o,c,"false" dia_${OutFileName}.nc |
---|
| 379 | |
---|
| 380 | ncatted --history --attribute Quantity,global,o,c,"false" rmp_${OutFileName}.nc |
---|
| 381 | ncatted --history --attribute Quantity,global,o,c,"false" dia_${OutFileName}.nc |
---|
| 382 | |
---|
| 383 | ncatted --history --attribute UseArea,global,o,c,"false" rmp_${OutFileName}.nc |
---|
| 384 | ncatted --history --attribute UseArea,global,o,c,"false" dia_${OutFileName}.nc |
---|
| 385 | |
---|
[3620] | 386 | ## |
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[4172] | 387 | echo ${Titre}"Correct spurious values (extremes)"${Norm} |
---|
[3620] | 388 | ## =========================================================================== |
---|
| 389 | cat <<EOF > correction_masque.nco |
---|
| 390 | where (OceFrac < 0.00001 ) OceFrac=OceFrac.get_miss() ; |
---|
| 391 | where (OceFrac > 0.99999 ) OceFrac=1.0 ; |
---|
| 392 | OceFrac.delete_miss() ; |
---|
| 393 | // Fill masked values to land values |
---|
| 394 | where (OceFrac > 1.0 ) OceFrac=0.0 ; |
---|
| 395 | where (OceFrac < 0.0 ) OceFrac=0.0 ; |
---|
[4298] | 396 | OceMask = OceFrac ; |
---|
[3620] | 397 | EOF |
---|
[4199] | 398 | ncap2 --history --overwrite --script-file correction_masque.nco dia_t${oce}_to_t${atm}_${FullName}.nc tmp_dia_t${oce}_to_t${atm}_${FullName}.nc ; mv tmp_dia_t${oce}_to_t${atm}_${FullName}.nc dia_t${oce}_to_t${atm}_${FullName}.nc |
---|
| 399 | ncatted --history -a missing_value,OceFrac,d,,"" -a _FillValue,OceFrac,d,,"" dia_t${oce}_to_t${atm}_${FullName}.nc |
---|
[4298] | 400 | ncatted --history -a missing_value,OceMask,d,,"" -a _FillValue,OceMask,d,,"" dia_t${oce}_to_t${atm}_${FullName}.nc |
---|
| 401 | |
---|
[3620] | 402 | ## |
---|
[4298] | 403 | echo ${Titre}"Creates mask on ATM grid"${Norm} |
---|
[3620] | 404 | ## =========================================================================== |
---|
[4199] | 405 | cp dia_t${oce}_to_t${atm}_${FullName}.nc dia_t${oce}_to_t${atm}_${FullName}_mask.nc |
---|
[4298] | 406 | ncks --alphabetize --history --overwrite --variable OceFrac dia_t${oce}_to_t${atm}_${FullName}_mask.nc ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[4317] | 407 | ncatted --history --attribute name,global,m,c,"${ATM}_grid_maskFrom_${OCE}.nc" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[3620] | 408 | |
---|
| 409 | cat <<EOF > creation_masque.nco |
---|
[4298] | 410 | Oce2AtmMask = OceMask ; |
---|
| 411 | where (OceMask > 0.0 ) Oce2AtmMask=1 ; |
---|
| 412 | where (OceMask <= 0.0 ) Oce2AtmMask=0 ; |
---|
[3620] | 413 | EOF |
---|
[4081] | 414 | |
---|
[4298] | 415 | ncap2 --history --overwrite --script-file creation_masque.nco dia_t${oce}_to_t${atm}_${FullName}.nc tmp_dia_${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 416 | ncks --overwrite --history --variable OceMask,OceFrac,Oce2AtmMask tmp_dia_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[3620] | 417 | |
---|
[4081] | 418 | if [[ $(ncdump -h ${ATM}_grid_maskFrom_${OCE}.nc | grep domain_dst | wc -l) -gt 0 ]] ; then |
---|
[4317] | 419 | echo "Change dimension names, and some attributes accordingly" |
---|
| 420 | ## =========================================================== |
---|
[4081] | 421 | case ${atm} in |
---|
| 422 | ( *ico* ) |
---|
[4088] | 423 | ncrename --history --dimension cell_domain_dst,cell ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 424 | ncrename --history --dimension nvertex_domain_dst,nvertex ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 425 | ncrename --history --variable lat_domain_dst,lat ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 426 | ncrename --history --variable lon_domain_dst,lon ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 427 | ncrename --history --variable bounds_lat_domain_dst,bounds_lat ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 428 | ncrename --history --variable bounds_lon_domain_dst,bounds_lon ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 429 | ncatted --history --attribute bounds,lat,m,c,"bounds_lat" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 430 | ncatted --history --attribute bounds,lon,m,c,"bounds_lon" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[4081] | 431 | ;; |
---|
[4317] | 432 | ( *lmd* ) |
---|
[5158] | 433 | ncrename --history --variable lon_domain_dst,lon ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[4317] | 434 | ncrename --history --variable lat_domain_dst,lat ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 435 | ncrename --history --dimension lon_domain_dst,lon ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 436 | ncrename --history --dimension lat_domain_dst,lat ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[4081] | 437 | ;; |
---|
| 438 | esac |
---|
| 439 | ncatted --history --attribute coordinates,OceFrac,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 440 | ncatted --history --attribute coordinates,OceMask,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[4298] | 441 | ncatted --history --attribute coordinates,Oce2AtmMask,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[4317] | 442 | |
---|
| 443 | ncatted --history --attribute long_name,OceFrac,c,c,"fraction of ocean in a grid cell" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 444 | ncatted --history --attribute units,OceFrac,c,c,"[0,1]" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 445 | ncatted --history --attribute long_name,OceMask,c,c,"fraction of ocean in a grid cell" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 446 | ncatted --history --attribute units,OceMask,c,c,"[0,1]" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 447 | ncatted --history --attribute long_name,Oce2AtmMask,c,c,"land mask" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 448 | ncatted --history --attribute units,Oce2AtmMask,c,c,"Land:0, Ocean:1" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[4088] | 449 | |
---|
[4081] | 450 | fi |
---|
| 451 | |
---|
[4320] | 452 | ncks --history --alphabetize --append --variable aire atm_grid.nc ${ATM}_grid_maskFrom_${OCE}.nc |
---|
[4317] | 453 | ncatted --history --attribute units,aire,m,c,"m^2" ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 454 | |
---|
[4081] | 455 | [[ ${atm} = *ico* ]] && ncks --alphabetize --history --append --variable bounds_lon,bounds_lat atm_grid.nc ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 456 | |
---|
[4298] | 457 | |
---|
[4320] | 458 | |
---|
[4298] | 459 | ## |
---|
[4199] | 460 | #echo ${Titre}"Creates mask of coastal OCE points"${Norm} |
---|
[3901] | 461 | ## =========================================================================== |
---|
[4199] | 462 | #${PyRun} python3 -u ComputeNemoCoast.py -n ${OcePerio} -i ${OCE}_coordinates_mask.nc # Creates OceCoastal |
---|
[4172] | 463 | |
---|
[3901] | 464 | ## |
---|
[4199] | 465 | #echo ${Titre}"Creates mask of coastal ATM points"${Norm} |
---|
[3901] | 466 | ## =========================================================================== |
---|
[4199] | 467 | #cat <<EOF > coastal.nco |
---|
| 468 | #AtmCoastal = OceFrac * 0.0 ; |
---|
| 469 | #where (OceFrac > 0.0 && OceFrac < 1.0 ) AtmCoastal = 1.0 ; |
---|
| 470 | #EOF |
---|
| 471 | #ncap2 --history --overwrite --script-file coastal.nco ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_coastal_maskFrom_${OCE}.nc |
---|
| 472 | #ncks --history --append --variable AtmCoastal ${ATM}_coastal_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc |
---|
| 473 | #rm ${ATM}_coastal_maskFrom_${OCE}.nc |
---|
[4081] | 474 | |
---|
[3901] | 475 | ## |
---|
[4172] | 476 | echo ${Titre}"Other weights files"${Norm} |
---|
[3718] | 477 | ## =========================================================================== |
---|
[4153] | 478 | # Loop on commands |
---|
| 479 | for Command in ${CommandList[@]} |
---|
| 480 | do |
---|
| 481 | echo "Command parameters : ${Command}" |
---|
[4186] | 482 | setValues ${Command} |
---|
[4172] | 483 | if [[ ${Command} = "Runoff" ]] ; then okRunoff=yes ; continue ; fi |
---|
| 484 | if [[ ${Command} = "Calving" ]] ; then okCalving=yes ; continue ; fi |
---|
[4186] | 485 | if [[ ${Command} = "Grids" ]] ; then okGrids=yes ; continue ; fi |
---|
[4172] | 486 | |
---|
[4153] | 487 | ln -fs ${OCE}_coordinates_mask.nc oce_grid.nc |
---|
[4298] | 488 | #ln -fs ${ATM}_grid.nc atm_grid.nc |
---|
| 489 | ln -fs ${ATM}_grid_maskFrom_${OCE}.nc atm_grid.nc |
---|
[4153] | 490 | |
---|
| 491 | case ${Direction} in |
---|
| 492 | ( o2a ) |
---|
| 493 | cp iodef_oce_to_atm.xml iodef.xml |
---|
[4082] | 494 | |
---|
[4317] | 495 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v maskutil_${DSTGRID} |
---|
[4298] | 496 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]' -k name -v Oce2AtmMask |
---|
[4082] | 497 | |
---|
[4172] | 498 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v maskutil_${SRCGRID} |
---|
| 499 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v area_grid_${SRCGRID} |
---|
[4298] | 500 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="mask_dest"]' -k name -v Oce2AtmMask |
---|
[4172] | 501 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="area_dest"]' -k name -v aire |
---|
[4153] | 502 | ;; |
---|
| 503 | ( a2o ) |
---|
| 504 | cp iodef_atm_to_oce.xml iodef.xml |
---|
[4082] | 505 | |
---|
[4298] | 506 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v Oce2AtmMask |
---|
[4172] | 507 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]' -k name -v mask_${DSTGRID} |
---|
[4082] | 508 | |
---|
[4298] | 509 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v Oce2AtmMask |
---|
[4172] | 510 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v aire |
---|
| 511 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="mask_dest"]' -k name -v mask_${DSTGRID} |
---|
| 512 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="area_dest"]' -k name -v area_grid_${DSTGRID} |
---|
[4153] | 513 | ;; |
---|
| 514 | esac |
---|
[4320] | 515 | |
---|
| 516 | OutFileName=${srcGrid}${src}_to_${dstGrid}${dst}_${FullName} |
---|
[4153] | 517 | |
---|
[4172] | 518 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType} |
---|
| 519 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType} |
---|
[4153] | 520 | |
---|
[4172] | 521 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType} |
---|
| 522 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType} |
---|
[4153] | 523 | |
---|
[4320] | 524 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_${OutFileName}.nc |
---|
[4172] | 525 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v ${numOrder} |
---|
| 526 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v ${Quantity} |
---|
| 527 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v ${Renormalize} |
---|
| 528 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v ${useArea} |
---|
[4153] | 529 | |
---|
[4320] | 530 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]' -k name -v dia_${OutFileName} |
---|
[4172] | 531 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]' -t "${SRC} mask interpolated to ${DST}" |
---|
| 532 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]' -t ${dstDomainType} |
---|
| 533 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${srcDomainType} |
---|
| 534 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t ${Renormalize} |
---|
| 535 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]' -t ${numOrder} |
---|
| 536 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]' -t ${Quantity} |
---|
| 537 | python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="use_area"]' -t ${useArea} |
---|
[4153] | 538 | |
---|
[4320] | 539 | cp iodef.xml iodef_${OutFileName}.xml |
---|
[4172] | 540 | ${MpiRun} ./interpol.exe --mask_src=${maskSrc} --mask_dst=${maskDst} --use_area=${useArea} |
---|
[4320] | 541 | |
---|
| 542 | case ${numOrder} in |
---|
| 543 | ( 1 ) |
---|
| 544 | ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" rmp_${OutFileName}.nc |
---|
| 545 | ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" dia_${OutFileName}.nc |
---|
| 546 | ;; |
---|
| 547 | ( 2 ) |
---|
| 548 | ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 2nd order" rmp_${OutFileName}.nc |
---|
| 549 | ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 2nd order" dia_${OutFileName}.nc |
---|
| 550 | ;; |
---|
| 551 | esac |
---|
| 552 | |
---|
| 553 | ncatted --history --attribute normalization,global,o,c,"${Renormalize}" rmp_${OutFileName}.nc |
---|
| 554 | ncatted --history --attribute normalization,global,o,c,"${Renormalize}" dia_${OutFileName}.nc |
---|
| 555 | |
---|
| 556 | ncatted --history --attribute Quantity,global,o,c,"${Quantity}" rmp_${OutFileName}.nc |
---|
| 557 | ncatted --history --attribute Quantity,global,o,c,"${Quantity}" dia_${OutFileName}.nc |
---|
| 558 | |
---|
| 559 | ncatted --history --attribute UseArea,global,o,c,"${useArea}" rmp_${OutFileName}.nc |
---|
| 560 | ncatted --history --attribute UseArea,global,o,c,"${useArea}" dia_${OutFileName}.nc |
---|
| 561 | |
---|
[3719] | 562 | done |
---|
[4153] | 563 | |
---|
[3620] | 564 | ## |
---|
[4172] | 565 | echo ${Titre}"Add some metadata in file headers"${Norm} |
---|
[3620] | 566 | ## =========================================================================== |
---|
| 567 | |
---|
| 568 | NCO="$(ncks --version |& tail -1|sed 's/ncks //')" |
---|
[4172] | 569 | PYTHON_VER=$( python3 -c "import sys ; print (sys.version.split(' ')[0])" ) |
---|
[4199] | 570 | for InFile in $(ls *${oce}_to_*${atm}_*.nc *${atm}_to_*${oce}_*.nc ${ATM}_grid_maskFrom_${OCE}.nc 2> /dev/null) ; do |
---|
[3639] | 571 | ncatted --history \ |
---|
[3620] | 572 | --attribute LongName,global,d,, \ |
---|
| 573 | --attribute nco_openmp_thread_number,global,d,, \ |
---|
| 574 | --attribute Conventions,global,o,c,"CF-1.6" \ |
---|
| 575 | --attribute source,global,o,c,"IPSL Earth system model" \ |
---|
| 576 | --attribute group,global,o,c,"ICMC IPSL Climate Modelling Center" \ |
---|
| 577 | --attribute Institution,global,o,c,"IPSL https://www.ipsl.fr" \ |
---|
| 578 | --attribute Ocean,global,o,c,"${OCE} https://www.nemo-ocean.eu" \ |
---|
| 579 | --attribute Atmosphere,global,o,c,"${ATM} http://lmdz.lmd.jussieu.fr" \ |
---|
| 580 | --attribute production,global,o,c,"$(finger ${LOGNAME} | head -1 | awk '{print $4, $5}') " \ |
---|
| 581 | --attribute originalFiles,global,o,c,"${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc" \ |
---|
[4195] | 582 | --attribute associatedFiles,global,o,c,"grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc" \ |
---|
[3620] | 583 | --attribute directory,global,o,c,"$(pwd)" \ |
---|
| 584 | --attribute description,global,o,c,"Fields needed by OASIS-MCT" \ |
---|
| 585 | --attribute title,global,o,c,"${InFile}.nc" \ |
---|
[4320] | 586 | --attribute Program,global,o,c,"Generated by CreateWeightsMask" \ |
---|
[3620] | 587 | --attribute timeStamp,global,o,c,"$(date)" \ |
---|
| 588 | --attribute HOSTNAME,global,o,c,"$(hostname)" \ |
---|
| 589 | --attribute LOGNAME,global,o,c,"$(whoami)" \ |
---|
| 590 | --attribute NCO,global,o,c,"NCO netCDF Operator ${NCO} http://nco.sourceforge.net" \ |
---|
[4172] | 591 | --attribute Python,global,o,c,"Python3 version ${PYTHON_VER}" \ |
---|
[3620] | 592 | --attribute release,global,o,c,"$(uname -r)" \ |
---|
| 593 | --attribute directory,global,o,c,"$(pwd)" \ |
---|
[3624] | 594 | --attribute description,global,o,c,"Generated with XIOS http://forge.ipsl.jussieu.fr/ioserver and MOSAIX https://forge.ipsl.jussieu.fr/igcmg/browser/TOOLS/MOSAIX" \ |
---|
[4090] | 595 | --attribute SVN_Author,global,o,c,'$Author$' \ |
---|
| 596 | --attribute SVN_Date,global,o,c,'$Date$' \ |
---|
| 597 | --attribute SVN_Revision,global,o,c,'$Revision$' \ |
---|
| 598 | --attribute SVN_Id,global,o,c,'$Id$' \ |
---|
[3620] | 599 | ${InFile} |
---|
| 600 | done |
---|
[4320] | 601 | |
---|
| 602 | # Duplicate with no global attribute to avoid erasing attributes in other files |
---|
| 603 | cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_noglobal.nc |
---|
| 604 | ncatted --history --attribute ,global,d,c, ${ATM}_grid_maskFrom_${OCE}_noglobal.nc |
---|
| 605 | |
---|
[3620] | 606 | ## |
---|
[4172] | 607 | echo ${Titre}"Update and complete weight files to fit OASIS requested format"${Norm} |
---|
[3620] | 608 | ## =========================================================================== |
---|
| 609 | cat <<EOF > add_dim.nco |
---|
| 610 | defdim("num_wgts",1) ; |
---|
| 611 | weight[n_weight, num_wgts] = weight ; |
---|
| 612 | EOF |
---|
| 613 | |
---|
[3719] | 614 | for rmpFile in rmp_*.nc ; do |
---|
[4199] | 615 | mv ${rmpFile} tmp_${rmpFile} |
---|
| 616 | ncap2 --history --script-file add_dim.nco tmp_${rmpFile} ${rmpFile} ; rm tmp_${rmpFile} |
---|
[3620] | 617 | |
---|
[3719] | 618 | ncrename --history --dimension n_weight,num_links ${rmpFile} |
---|
| 619 | ncrename --history --variable src_idx,src_address ${rmpFile} |
---|
| 620 | ncrename --history --variable dst_idx,dst_address ${rmpFile} |
---|
| 621 | ncrename --history --variable weight,remap_matrix ${rmpFile} |
---|
[4320] | 622 | |
---|
| 623 | |
---|
[3719] | 624 | ncatted --history --attribute conventions,global,o,c,"SCRIP" ${rmpFile} |
---|
| 625 | ncatted --history --attribute normalization,global,o,c,"none" ${rmpFile} |
---|
[3620] | 626 | |
---|
[3719] | 627 | case ${rmpFile} in |
---|
[3620] | 628 | ( rmp_*${oce}_to_t${atm}_* ) |
---|
[3639] | 629 | ncatted --history \ |
---|
[3620] | 630 | --attribute title,global,o,c,"Weights ${OCE} to ${ATM}" \ |
---|
[4153] | 631 | --attribute source_grid,global,o,c,"${oceDomainType}" \ |
---|
| 632 | --attribute dest_grid,global,o,c,"${atmDomainType}" \ |
---|
[3719] | 633 | ${rmpFile} |
---|
[3620] | 634 | ;; |
---|
| 635 | ( rmp_*${atm}_to_*${oce}_* ) |
---|
[3639] | 636 | ncatted --history \ |
---|
[3620] | 637 | --attribute title,global,o,c,"Weights ${ATM} to ${OCE}" \ |
---|
[4153] | 638 | --attribute source_grid,global,o,c,"${atmDomainType}" \ |
---|
| 639 | --attribute dest_grid,global,o,c,"${oceDomainType}" \ |
---|
[3719] | 640 | ${rmpFile} |
---|
[3620] | 641 | ;; |
---|
| 642 | esac |
---|
| 643 | done |
---|
| 644 | |
---|
[4186] | 645 | ls |
---|
[3620] | 646 | ## |
---|
[4172] | 647 | echo ${Titre}"Add missing variables in rmp files"${Norm} |
---|
[3639] | 648 | ## =========================================================================== |
---|
[4259] | 649 | for rmpFile in $(ls rmp_?${atm}_to_[tuv]${oce}_*.nc rmp_[tuv]${oce}_to_t${atm}_*.nc 2> /dev/null ) ; do |
---|
[3901] | 650 | echo ${rmpFile} |
---|
[3719] | 651 | a_to_o=false ; o_to_a=false |
---|
| 652 | case ${rmpFile} in |
---|
| 653 | ( rmp_?${oce}_to_?${atm}_*.nc ) o_to_a=true ;; |
---|
| 654 | ( rmp_?${atm}_to_?${oce}_*.nc ) a_to_o=true ;; |
---|
| 655 | esac |
---|
| 656 | |
---|
[3901] | 657 | for Grid in t u v o c ; do # Identify grids |
---|
| 658 | [[ ${rmpFile} = rmp_${Grid}${oce}_to_?${atm}_*.nc ]] && ogrid=${Grid} |
---|
| 659 | [[ ${rmpFile} = rmp_?${oce}_to_${Grid}${atm}_*.nc ]] && agrid=${Grid} |
---|
| 660 | [[ ${rmpFile} = rmp_${Grid}${atm}_to_?${oce}_*.nc ]] && agrid=${Grid} |
---|
| 661 | [[ ${rmpFile} = rmp_?${atm}_to_${Grid}${oce}_*.nc ]] && ogrid=${Grid} |
---|
[3719] | 662 | done |
---|
| 663 | OGRID=${ogrid^} |
---|
| 664 | AGRID=${agrid^} |
---|
[3639] | 665 | |
---|
[3719] | 666 | cat <<EOF >add_varoce.nco |
---|
[3639] | 667 | defdim ("src_grid_size" , \$x_grid_${OGRID}.size*\$y_grid_${OGRID}.size) ; |
---|
| 668 | defdim ("src_grid_corners", 4) ; |
---|
| 669 | defdim ("src_grid_rank" , 2) ; |
---|
| 670 | // |
---|
| 671 | src_grid_dims[src_grid_rank] = { \$y_grid_${OGRID}.size, \$x_grid_${OGRID}.size } ; |
---|
| 672 | // |
---|
| 673 | src_grid_center_lat [src_grid_size] = 0.0d ; |
---|
| 674 | src_grid_center_lon [src_grid_size] = 0.0d ; |
---|
| 675 | src_grid_center_lat (:) = nav_lat_grid_${OGRID}(:,:) ; |
---|
| 676 | src_grid_center_lon (:) = nav_lon_grid_${OGRID}(:,:) ; |
---|
| 677 | // |
---|
| 678 | src_grid_corner_lat [src_grid_size, src_grid_corners] = 0.0d ; |
---|
| 679 | src_grid_corner_lon [src_grid_size, src_grid_corners] = 0.0d ; |
---|
| 680 | src_grid_corner_lat(:,:) = bounds_lat_grid_${OGRID}(:,:,:) ; |
---|
| 681 | src_grid_corner_lon(:,:) = bounds_lon_grid_${OGRID}(:,:,:) ; |
---|
| 682 | // |
---|
| 683 | src_grid_imask [src_grid_size] = 0 ; |
---|
| 684 | src_grid_area [src_grid_size] = 0.0d ; |
---|
| 685 | src_grid_frac [src_grid_size] = 1.0d ; |
---|
| 686 | src_grid_imask (:) = 1 - mask_${OGRID}(:,:) ; |
---|
| 687 | src_grid_imask.int() ; |
---|
| 688 | src_grid_area (:) = area_grid_${OGRID}(:,:) ; |
---|
| 689 | EOF |
---|
| 690 | |
---|
[4146] | 691 | cp add_varoce.nco add_varoce_$(basename ${rmpFile} .nc)_o_to_a.nco |
---|
[4199] | 692 | [[ ${o_to_a} = true ]] && ncap2 --history --append --script-file add_varoce_$(basename ${rmpFile} .nc)_o_to_a.nco ${OCE}_coordinates_mask.nc ${rmpFile} |
---|
[6045] | 693 | sed -i~ -e "s/src_/dst_/g" add_varoce.nco |
---|
[4146] | 694 | cp add_varoce.nco add_varoce_$(basename ${rmpFile} .nc)_a_to_o.nco |
---|
[4199] | 695 | [[ ${a_to_o} = true ]] && ncap2 --history --append --script-file add_varoce_$(basename ${rmpFile} .nc)_a_to_o.nco ${OCE}_coordinates_mask.nc ${rmpFile} |
---|
[3719] | 696 | |
---|
| 697 | if [[ ${atm} = ico ]] ; then |
---|
| 698 | cat <<EOF >add_varatm.nco |
---|
[3639] | 699 | defdim ("dst_grid_size" , \$cell.size) ; |
---|
| 700 | defdim ("dst_grid_corners", 6) ; |
---|
| 701 | defdim ("dst_grid_rank" , 2) ; |
---|
| 702 | // |
---|
| 703 | dst_grid_dims[dst_grid_rank] = { \$cell.size, 1 } ; |
---|
| 704 | // |
---|
| 705 | dst_grid_center_lat [dst_grid_size] = 0.0d ; |
---|
| 706 | dst_grid_center_lon [dst_grid_size] = 0.0d ; |
---|
| 707 | dst_grid_center_lat (:) = lat(:) ; |
---|
| 708 | dst_grid_center_lon (:) = lon(:) ; |
---|
| 709 | // |
---|
| 710 | dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ; |
---|
| 711 | dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ; |
---|
| 712 | dst_grid_corner_lat(:,:) = bounds_lat(:,:) ; |
---|
| 713 | dst_grid_corner_lon(:,:) = bounds_lon(:,:) ; |
---|
| 714 | // |
---|
| 715 | dst_grid_imask [dst_grid_size] = 0 ; |
---|
| 716 | dst_grid_area [dst_grid_size] = 0.0d ; |
---|
| 717 | dst_grid_frac [dst_grid_size] = 1.0d ; |
---|
[4298] | 718 | dst_grid_imask (:) = 1 - Oce2AtmMask(:) ; |
---|
[3639] | 719 | dst_grid_imask.int() ; |
---|
| 720 | dst_grid_area (:) = aire(:) ; |
---|
[4259] | 721 | dst_grid_frac (:) = OceFrac(:) ; |
---|
[3639] | 722 | EOF |
---|
[4146] | 723 | cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco |
---|
[3719] | 724 | if [[ ${o_to_a} = true ]] ; then |
---|
[4320] | 725 | ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco ${ATM}_grid_maskFrom_${OCE}_noglobal.nc ${rmpFile} |
---|
[3719] | 726 | ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc |
---|
| 727 | mv rmp_tmp.nc ${rmpFile} |
---|
| 728 | fi |
---|
[3718] | 729 | |
---|
[6045] | 730 | sed -i~ -e "s/dst_/src_/g" add_varatm.nco |
---|
[4146] | 731 | cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco |
---|
[3719] | 732 | if [[ ${a_to_o} = true ]] ; then |
---|
[4320] | 733 | ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco ${ATM}_grid_maskFrom_${OCE}_noglobal.nc ${rmpFile} |
---|
[3719] | 734 | ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc |
---|
| 735 | mv rmp_tmp.nc ${rmpFile} |
---|
| 736 | fi |
---|
| 737 | fi |
---|
[3966] | 738 | |
---|
[3719] | 739 | if [[ ${atm} = lmd ]] ; then |
---|
| 740 | cat <<EOF >add_varatm.nco |
---|
[3639] | 741 | defdim ("dst_grid_size" , \$lon.size*\$lat.size) ; |
---|
| 742 | defdim ("dst_grid_corners", 4) ; |
---|
| 743 | defdim ("dst_grid_rank" , 2) ; |
---|
| 744 | // |
---|
| 745 | dst_grid_dims[dst_grid_rank] = { \$lat.size, \$lon.size } ; |
---|
| 746 | // |
---|
| 747 | dst_grid_center_lat [dst_grid_size] = 0.0d ; |
---|
| 748 | dst_grid_center_lon [dst_grid_size] = 0.0d ; |
---|
| 749 | lat0lon[lat,lon] = lat(:)+0*lon(:) ; |
---|
| 750 | lon0lat[lat,lon] = lon(:)+0*lat(:) ; |
---|
| 751 | dst_grid_center_lat (:) = lat0lon(:,:) ; |
---|
| 752 | dst_grid_center_lon (:) = lon0lat(:,:) ; |
---|
| 753 | // |
---|
| 754 | //dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ; // Not available for LMDZ lon/lat grid |
---|
| 755 | //dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ; |
---|
| 756 | //dst_grid_corner_lat(:,:) = bounds_lat(:,:) ; |
---|
| 757 | //dst_grid_corner_lon(:,:) = bounds_lon(:,:) ; |
---|
| 758 | // |
---|
| 759 | dst_grid_imask [dst_grid_size] = 0 ; |
---|
| 760 | dst_grid_area [dst_grid_size] = 0.0d ; |
---|
| 761 | dst_grid_frac [dst_grid_size] = 1.0d ; |
---|
[4298] | 762 | dst_grid_imask (:) = 1 - Oce2AtmMask(:,:) ; |
---|
[3639] | 763 | dst_grid_imask.int() ; |
---|
| 764 | dst_grid_area (:) = aire(:,:) ; |
---|
[4259] | 765 | dst_grid_frac (:) = OceFrac(:,:) ; |
---|
[3639] | 766 | EOF |
---|
[4146] | 767 | cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco |
---|
[3719] | 768 | if [[ ${o_to_a} = true ]] ; then |
---|
[4320] | 769 | ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco ${ATM}_grid_maskFrom_${OCE}_noglobal.nc ${rmpFile} |
---|
[3719] | 770 | ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc |
---|
| 771 | mv rmp_tmp.nc ${rmpFile} |
---|
| 772 | fi |
---|
| 773 | |
---|
[6045] | 774 | sed -i~ -e "s/dst/src/g" add_varatm.nco |
---|
[4146] | 775 | cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco |
---|
[3719] | 776 | if [[ ${a_to_o} = true ]] ; then |
---|
[4320] | 777 | ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco ${ATM}_grid_maskFrom_${OCE}_noglobal.nc ${rmpFile} |
---|
[3719] | 778 | ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc |
---|
| 779 | mv rmp_tmp.nc ${rmpFile} |
---|
| 780 | fi |
---|
| 781 | fi |
---|
[3639] | 782 | done |
---|
[3901] | 783 | ls -al ${OCE}_coordinates_mask.nc |
---|
[3639] | 784 | ## |
---|
[4186] | 785 | ## ============================================================================ |
---|
[4172] | 786 | echo ${Titre}"Creates and save auxiliary files for OASIS : grids.nc, areas.nc and masks.nc"${Norm} |
---|
[4186] | 787 | cp ${SUBMIT_DIR}/CreateOasisGrids.bash . |
---|
| 788 | bash CreateOasisGrids.bash --oce ${OCE} --atm ${ATM} |
---|
[4097] | 789 | |
---|
| 790 | |
---|
| 791 | ## |
---|
[4172] | 792 | echo ${Titre}"Runoff weights"${Norm} |
---|
[4097] | 793 | ## =========================================================================== |
---|
[4186] | 794 | if [[ "X${okRunoff}" = "Xyes" ]] ; then |
---|
[4195] | 795 | ${PyRun} python3 -u RunoffWeights.py --oce=${OCE} --atm=${ATM} \ |
---|
[4172] | 796 | --atmCoastWidth=${atmCoastWidth} --oceCoastWidth=${oceCoastWidth} --searchRadius=${searchRadius} \ |
---|
[4195] | 797 | --grids=grids_${CplModel}.nc --areas=areas_${CplModel}.nc --masks=masks_${CplModel}.nc \ |
---|
[4199] | 798 | --o2a=${ATM}_grid_maskFrom_${OCE}.nc --output=rmp_t${atm}_to_t${oce}_runoff_${runOff_atmQuantity}_to_${runOff_oceQuantity}.nc \ |
---|
| 799 | --fmt=${FMT_XIOS} \ |
---|
[5925] | 800 | --atmQuantity=${runOff_atmQuantity} --oceQuantity=${runOff_oceQuantity} --ocePerio=${OcePerio} |
---|
[4172] | 801 | fi |
---|
[6064] | 802 | exit |
---|
[4097] | 803 | ## |
---|
[4172] | 804 | echo ${Titre}"Calving weights"${Norm} |
---|
[3620] | 805 | ## =========================================================================== |
---|
[4172] | 806 | if [[ "X${okCalving}" = "Xyes" ]] ; then |
---|
| 807 | case ${OCE} in |
---|
[4298] | 808 | ( eORCA025* ) |
---|
[4186] | 809 | cp /ccc/work/cont003/gencmip6/deshayej/eORCA_R025_runoff_v1.2.nc . |
---|
[4199] | 810 | ${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_nosouth.nc --fmt=${FMT_XIOS} \ |
---|
[4186] | 811 | --oce=${OCE} --atm=${ATM} --type=nosouth --dir=. |
---|
[4199] | 812 | ${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceberg.nc --fmt=${FMT_XIOS} \ |
---|
[4186] | 813 | --oce=${OCE} --atm=${ATM} --type=iceberg --dir=. --repartition_file=eORCA_R025_runoff_v1.2.nc --repartition_var=Icb_flux |
---|
[4199] | 814 | ${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceshelf.nc --fmt=${FMT_XIOS} \ |
---|
[4186] | 815 | --oce=${OCE} --atm=${ATM} --type=iceshelf --dir=. --repartition_file=eORCA_R025_runoff_v1.2.nc --repartition_var=sornfisf |
---|
[4172] | 816 | ;; |
---|
| 817 | |
---|
| 818 | ( eORCA1.2 ) |
---|
| 819 | cp ${R_IN}/OCE/NEMO/ORCA1_LIM3_PISCES/v3.6_stable/runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc . |
---|
[4199] | 820 | ${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_nosouth.nc --fmt=${FMT_XIOS}\ |
---|
[4172] | 821 | --oce=${OCE} --atm=${ATM} --type=nosouth --dir=. |
---|
[4199] | 822 | ${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceberg.nc --fmt=${FMT_XIOS}\ |
---|
[4172] | 823 | --oce=${OCE} --atm=${ATM} --type=iceberg --dir=. --repartition_file=runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc --repartition_var=Icb_flux |
---|
[4199] | 824 | ${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceshelf.nc --fmt=${FMT_XIOS}\ |
---|
[4172] | 825 | --oce=${OCE} --atm=${ATM} --type=iceshelf --dir=. --repartition_file=runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc --repartition_var=sornfisf |
---|
| 826 | ;; |
---|
| 827 | |
---|
| 828 | ( * ) |
---|
[4199] | 829 | ${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_full.nc --fmt=${FMT_XIOS} \ |
---|
[5925] | 830 | --oce=${OCE} --atm=${ATM} --type=full --dir=. --ocePerio=${OcePerio} |
---|
[4172] | 831 | ;; |
---|
| 832 | |
---|
| 833 | esac |
---|
| 834 | fi |
---|
| 835 | |
---|
| 836 | ## |
---|
[4199] | 837 | echo ${Titre}"Simplifies headers, add version and comment"${Norm} |
---|
[4172] | 838 | ## =========================================================================== |
---|
[4199] | 839 | for File in $(ls dia_*.nc rmp_*.nc ${ATM}_grid_maskFrom_${OCE}*.nc areas_${OCE}x${ATM}*.nc grids_${OCE}x${ATM}*.nc masks_${OCE}x${ATM}*.nc 2> /dev/null ) ; do |
---|
[4037] | 840 | ncatted --history --attribute history_of_appended_files,global,d,c,"" ${File} |
---|
[4199] | 841 | ncatted --history --attribute history,global,d,c,"" ${File} |
---|
[4172] | 842 | [[ "X${Comment}" != "X" ]] && ncatted --history --attribute Comment,global,o,c,"${Comment}" ${File} |
---|
| 843 | [[ "X${Version}" != "X" ]] && ncatted --history --attribute Version,global,o,c,"${Version}" ${File} |
---|
[4199] | 844 | [[ "X${Tag}" != "X" ]] && ncatted --history --attribute Version,global,o,c,"${Tag}" ${File} |
---|
| 845 | done |
---|
| 846 | |
---|
| 847 | ## |
---|
| 848 | echo ${Titre}"Rename rmp and dia files"${Norm} |
---|
| 849 | ## =========================================================================== |
---|
[4259] | 850 | for File in $(ls *${oce}*${atm}* *${atm}*${oce}* 2> /dev/null ); do |
---|
[3719] | 851 | NewFile=$(echo ${File} | sed -e "s/${atm}/${ATM}/" -e "s/${oce}/${OCE}/" ) |
---|
[4259] | 852 | mv ${File} ${NewFile} |
---|
[3620] | 853 | done |
---|
| 854 | |
---|
[4199] | 855 | ## |
---|
| 856 | echo ${Titre}"Add Tag"${Norm} |
---|
| 857 | ## =========================================================================== |
---|
| 858 | if [[ "X${Tag}" != "X" ]] ; then |
---|
| 859 | for File in $(ls dia_*.nc rmp_*.nc ${ATM}_grid_maskFrom_${OCE}*.nc areas_${OCE}x${ATM}*.nc grids_${OCE}x${ATM}*.nc masks_${OCE}x${ATM}*.nc 2> /dev/null ) ; do |
---|
| 860 | mv ${File} $(basename ${File} .nc)_${Tag}.nc |
---|
| 861 | done |
---|
[4186] | 862 | fi |
---|
[4199] | 863 | ## |
---|
| 864 | echo ${Titre}"Add Version"${Norm} |
---|
| 865 | ## =========================================================================== |
---|
| 866 | if [[ "X${Version}" != "X" ]] ; then |
---|
| 867 | for File in $(ls dia_*.nc rmp_*.nc ${ATM}_grid_maskFrom_${OCE}*.nc areas_${OCE}x${ATM}*.nc grids_${OCE}x${ATM}*.nc masks_${OCE}x${ATM}*.nc 2> /dev/null ) ; do |
---|
| 868 | mv ${File} $(basename ${File} .nc)_${Version}.nc |
---|
| 869 | done |
---|
| 870 | fi |
---|
| 871 | |
---|
| 872 | ## =========================================================================== |
---|
| 873 | echo ${Titre}"Save results"${Norm} |
---|
| 874 | ## =========================================================================== |
---|
| 875 | for File in $(ls dia_*.nc rmp_*.nc ${ATM}_grid_maskFrom_${OCE}*.nc areas_${OCE}x${ATM}*.nc grids_${OCE}x${ATM}*.nc masks_${OCE}x${ATM}*.nc 2> /dev/null ) ; do |
---|
| 876 | cp ${File} ${SUBMIT_DIR} |
---|
| 877 | done |
---|
[4172] | 878 | |
---|
[4199] | 879 | |
---|
[3620] | 880 | ## |
---|
[4172] | 881 | echo ${Titre}"Creates a README.txt file"${Norm} |
---|
[4090] | 882 | ## =========================================================================== |
---|
| 883 | [[ -f README.txt ]] && rm README.txt |
---|
[4298] | 884 | UUID=$(uuid) |
---|
[3620] | 885 | |
---|
[4090] | 886 | cat <<EOF > README.txt |
---|
| 887 | Files produced by CreateWeightsMask.bash and CreateOasisGrids.bash |
---|
| 888 | |
---|
| 889 | rmp_* are weights files |
---|
| 890 | dia_* are diagnostic files not needed for the coupler |
---|
[4195] | 891 | grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc are auxiliary file needed by OASIS-MCT |
---|
[4090] | 892 | All files have the same uuid in the global attributes |
---|
| 893 | |
---|
| 894 | Description : Weigths and auxiliary files for coupling ${OCE} and ${ATM} needed by OASIS-MCT |
---|
| 895 | Conventions : CF-1.6 |
---|
| 896 | source : IPSL Earth system model |
---|
| 897 | group : ICMC IPSL Climate Modelling Center |
---|
| 898 | Institution : IPSL https://www.ipsl.fr |
---|
| 899 | Ocean : ${OCE} https://www.nemo-ocean.eu |
---|
| 900 | Atmosphere : ${ATM} http://lmdz.lmd.jussieu.fr |
---|
| 901 | production : $(finger ${LOGNAME} | head -1 | awk '{print $4, $5}') |
---|
| 902 | originalFiles : ${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc |
---|
[4195] | 903 | associatedFiles : grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc |
---|
[4090] | 904 | directory : $(pwd) |
---|
| 905 | timeStamp : $(date) |
---|
| 906 | uuid : ${UUID} |
---|
| 907 | HOSTNAME : $(hostname) |
---|
| 908 | LOGNAME : $(whoami) |
---|
| 909 | NCO : NCO netCDF Operator ${NCO} http://nco.sourceforge.net |
---|
| 910 | Python version : ${PYTHON_VER} |
---|
| 911 | release : $(uname -r) |
---|
[4091] | 912 | EOF |
---|
[4090] | 913 | |
---|
[4091] | 914 | echo 'SVN Information : ' >> README.txt |
---|
| 915 | echo '$Author$ ' >> README.txt |
---|
| 916 | echo '$Date$ ' >> README.txt |
---|
| 917 | echo '$Revision$ ' >> README.txt |
---|
| 918 | echo '$Id$ ' >> README.txt |
---|
| 919 | echo '$HeadURL$ ' >> README.txt |
---|
[4090] | 920 | |
---|
[4172] | 921 | echo ${Titre}"Compute checksums and add them to README"${Norm} |
---|
[4199] | 922 | # ------------------------------------------------------------ |
---|
[4091] | 923 | cat << EOF >> README.txt |
---|
[4090] | 924 | |
---|
[4159] | 925 | Files produced, with checksum produced by Unix command shasum (version $(shasum --version)) with default algorithm |
---|
[4090] | 926 | |
---|
| 927 | EOF |
---|
| 928 | |
---|
[4199] | 929 | for file in $(ls dia_*.nc rmp_*.nc ${ATM}_grid_maskFrom_${OCE}*.nc areas_${OCE}x${ATM}*.nc grids_${OCE}x${ATM}*.nc masks_${OCE}x${ATM}*.nc 2> /dev/null ) ; do |
---|
[4320] | 930 | ncatted --history --attribute uuid,global,o,c,"${UUID}" ${file} |
---|
[4090] | 931 | echo "$(shasum ${file})" >> README.txt |
---|
| 932 | done |
---|
| 933 | |
---|
| 934 | cat <<EOF >> README.txt |
---|
| 935 | |
---|
| 936 | ================= That's all folk's ! ======================== |
---|
| 937 | EOF |
---|
| 938 | |
---|
[4259] | 939 | if [[ "X${Version}" != "X" ]] ; then |
---|
| 940 | cp README.txt ${SUBMIT_DIR}/README_${CplModel}_MOSAIX_${Version}.txt |
---|
| 941 | else |
---|
| 942 | cp README.txt ${SUBMIT_DIR}/README_${CplModel}_MOSAIX.txt |
---|
| 943 | fi |
---|
[3620] | 944 | ## =========================================================================== |
---|
| 945 | ## |
---|
[4172] | 946 | echo ${Titre}" That's all folk's !!! "${Norm} |
---|
[3620] | 947 | ## |
---|
| 948 | ## =========================================================================== |
---|
| 949 | |
---|