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source: TOOLS/MOSAIX/CreateWeightsMask.bash @ 5925

Last change on this file since 5925 was 5925, checked in by snguyen, 3 years ago
Ajout du notebook de génération du fichier coordonnées masks bounds en python
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Rev	Line
[5158]	1	#!/bin/bash
[3719]	2	#MSUB -r WeightsMask # Job name
	3	#MSUB -o Out_WeightsMask # Standard output
	4	#MSUB -e Out_WeightsMask # Error output
[4402]	5	#MSUB -n 4 # Number of processors
[5925]	6	##MSUB -T 7200 # Time limit (seconds)
	7	#MSUB -T 1800
	8	#MSUB -Q test
[3966]	9	#MSUB -q skylake
	10	#MSUB -p gen2212
[5158]	11	#MSUB -m work,store
[3620]	12
	13	### ===========================================================================
	14	###
[3719]	15	### Creates interpolation weights between ORCA and atmosphere grids.
[3620]	16	### Interpolates ORCA mask to atmosphere grid.
	17	### Weight files are at OASIS-MCT format.
	18	###
	19	### Atmosphere grid may be lon/lat LMDZ or DYNAMICO icosahedron
[3627]	20	###
	21	### Documentation : https://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM6/MOSAIX
[3620]	22	### ===========================================================================
	23	##
	24	## Warning, to install, configure, run, use any of Olivier Marti's
	25	## software or to read the associated documentation you'll need at least
	26	## one (1) brain in a reasonably working order. Lack of this implement
	27	## will void any warranties (either express or implied).
	28	## O. Marti assumes no responsability for errors, omissions,
	29	## data loss, or any other consequences caused directly or indirectly by
	30	## the usage of his software by incorrectly or partially configured
	31	## personal.
	32	##
[3623]	33	## SVN information
[3665]	34	# $Author$
	35	# $Date$
	36	# $Revision$
	37	# $Id$
[3632]	38	# $HeadURL$
[4090]	39	#
[4317]	40	# CplModel=eORCA1.2xLMD144142 ; qsub -r ${CplModel} -o Out_${CplModel} -e Out_${CplModel} CreateWeightsMask.bash
	41	# CplModel=ORCA2.3xLMD9695
	42	# CplModel=ORCA2.3xICO30
	43	# CplModel=ORCA2.3xICO40
	44	# CplModel=eORCA1.2xICO40
[4320]	45	# CplModel=eORCA1.2xICO450
[4317]	46	# CplModel=eORCA1.2xLMD256256
[4320]	47	# CplModel=eORCA025.1xLMD144142
[4317]	48	# CplModel=eORCA025.1xLMD256256
[4195]	49	#
	50
[4172]	51	set +vx
[3901]	52	export Bold=$(tput bold)
	53	export Unde=$(tput smul) ; export OffUnde=$(tput rmul)
	54	export Stou=$(tput smso) ; export OffStou=$(tput rmso)
	55	export Reve=$(tput rev )
	56	couleurs=( "Black" "Blue" "Green" "Cyan" "Red" "Magenta" "Yellow" "White" )
[4259]	57	for i in $(seq 0 7) ; do eval "export ${couleurs[$i]}=$(tput setf ${i})" ; done
[4186]	58	export Norm=$(tput sgr0)
[4172]	59	export Titre=${Bold}${Blue}
[3620]	60
	61	##
	62	## Configuration
	63	## ===========================================================================
[4159]	64	set -e
[5158]	65	echo BASH Version ${BASH_VERSION}
	66	echo SHELL ${SHELL}
[3620]	67
	68	#
[4317]	69	echo ${Titre}"Defines model"${Norm}
	70	# =================================
[5925]	71	CplModel=ORCA2.3xLMD9695
[4317]	72	#CplModel=ORCA2.3xICO30
	73	#CplModel=ORCA2.3xICO40
[5925]	74	#CplModel=eORCA1.2xLMD144142
[4317]	75	#CplModel=eORCA1.2xLMD256256
	76	#CplModel=eORCA1.2xICO40
	77	#CplModel=eORCA1.2xICO450
	78	#CplModel=eORCA025.1xLMD256256
[3620]	79
[4402]	80	#Version="v0" ; Comment="Fully tested in IPSLCM6 eORCA1.2 x LMD 144x142"
	81	Version="v1" ; Comment="Fully tested in IPSLCM6 eORCA1.2 x LMD 144x142"
[3620]	82
[4317]	83	# If available, get model name from job name
[4195]	84	if [[ X${SLURM_JOB_NAME} = XORC \|\| X${SLURM_JOB_NAME} = XLMD \|\| X${SLURM_JOB_NAME} = XICO ]] ; then
[4317]	85	CplModel=${SLURM_JOB_NAME} ;
[4195]	86	fi
[4317]	87	OCE=${CplModel//x} ; ATM=${CplModel##x}
[4195]	88
[4186]	89	echo ${Titre}"ATM model : ${ATM}"${Norm}
	90	echo ${Titre}"OCE model : ${OCE}"${Norm}
[4195]	91	echo ${Titre}"Cpl model : ${CplModel}"${Norm}
[5548]	92	echo ${Titre}"Version : ${Version}"${Norm}
[4172]	93
[4186]	94	# Runoff parameter. atmCoastWidth and oceCoastWidth in grid points, searchRadius in km
[4402]	95	atmCoastWidth=2 ; oceCoastWidth=2 ; searchRadius=550.0
[4298]	96	runOff_atmQuantity=Quantity ; runOff_oceQuantity=Surfacic
[4172]	97
[4402]	98	# Specific cases
[4298]	99	[[ ${ATM} = ICO* ]] && atmCoastWidth=0 # Parameter relevant for LMD rectilinear grid only
	100	[[ ${ATM} = LMD* ]] && atmCoastWidth=2
[5548]	101	[[ ${OCE} = ORCA2.* ]] && oceCoastWidth=1
	102	[[ ${OCE} = eORCA1.* ]] && oceCoastWidth=2
[4298]	103	[[ ${OCE} = eORCA025* ]] && oceCoastWidth=1
[4186]	104
[4402]	105	# More specific cases
[5548]	106	[[ ${CplModel} = eORCA1.2xLMD144142 ]] && { atmCoastWidth=2 ; oceCoastWidth=2 ; searchRadius=550.0 ; Version="v1" ; Comment="Fully tested in IPSLCM6 eORCA1.2 x LMD 144x142" ; }
[4402]	107
[4153]	108	# Default values, used to create ocean fraction on atmospheric grid
[4186]	109	DefaultValues=( Direction=o2a,oceGrid=t,atmGrid=t,Order=1st,Quantity=false,Renormalize=false,useArea=false,maskSrc=true,maskDst=false,Name=OceFrac )
[3620]	110
[4172]	111	## List of weights to build
	112	## ====================================================================================================================================
	113	#
	114	# Each item in CommandList describes the properties of interpolation weights to generate.
[4159]	115	# White spaces separate analysis. No spaces in any analysis.
	116	#
[4172]	117	# Specific commands : 'Runoff', 'Calving'
	118	#
[4159]	119	# Keywords :
[4298]	120	# Direction : o2a for ocean to atmosphere, a2o for atmosphere to ocean.
	121	# Order : 1st or 2nd.
[4159]	122	# Quantity : true if integrated quantity over a grid box, false for flux (quantity / m^2)
[4298]	123	# or intensive value (temperature, salinity, sea-ice fraction, ...).
	124	# Renormalize : used when source grid is masked, to use values on non masked points only.
	125	# oceGrid : t, u or v point for NEMO C grid.
	126	# atmGrid : up to know, only t grid used in the atmosphere.
	127	# useArea : if true area from the model metrics is used. If false, areas are computed by XIOS from grid corners.
	128	# maskSrc : true to use the source grid mask, false to used all grid points.
	129	# maskDst : true to use the destination grid mask, false to use all grid points.
[4159]	130	#
[4259]	131	## Classic cases for IPSLCM6
	132	AtmOceFluxes=" Direction=a2o,Order=1st,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=HeatWaterFluxes" # Heat and water fluxes
[4320]	133	OceAtmTemp=" Direction=o2a,Order=1st,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=TempIceAlb" # Temperature, sea-ice fraction, albedo
	134	OceAtmTemp2nd=" Direction=o2a,Order=2nd,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=TempIceAlb" # Temperature, sea-ice fraction, albedo
	135	AtmOceStressU=" Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=u,useArea=true,maskSrc=true,maskDst=true,Name=WindStress" # Wind stress to NEMO U point
	136	AtmOceStressV=" Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=v,useArea=true,maskSrc=true,maskDst=true,Name=WindStress" # Wind stress to NEMO V point
	137	AtmOceQuantity=" Direction=a2o,Order=1st,Quantity=true,Renormalize=false,atmGrid=t,oceGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=Quantity" # e.g. runoff
[4298]	138	# For new parameterization
	139	AtmOceTemp=" Direction=o2a,Order=1st,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=OceTemp" # e.g. T and S correction from DWL parametrization
[4259]	140	OceAtmFluxes=" Direction=o2a,Order=1st,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=OceAtmFluxes" # e.g. CO2 fluxes
[4298]	141	# Test to do with 2nd order
	142	AtmOceFluxes2nd="Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=HeatWaterFluxes" # Heat and water fluxes
[4259]	143	OceAtmFluxes2nd="Direction=o2a,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=OceAtmFluxes" # e.g. CO2 fluxes
[4317]	144	AtmOceTemp2nd=" Direction=o2a,Order=2nd,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=OceTemp" # e.g. T and S correction from DWL parametrization
[4159]	145
[4259]	146	## Creates the list
	147
[4186]	148	# Standard list for IPSLCM6
	149	#CommandList=( ${AtmOceFluxes} ${OceAtmTemp} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} Runoff Calving Grids )
[4172]	150
[4259]	151	# More comprehensive list for IPSLCM6 with new features
[4317]	152	#CommandList=( ${AtmOceFluxes} ${OceAtmTemp} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} ${AtmOceTemp} Runoff Calving Grids )
[4172]	153
[4259]	154	# With 2nd order
[4317]	155	CommandList=( ${AtmOceFluxes} ${AtmOceFluxes2nd} ${OceAtmTemp} ${OceAtmTemp2nd} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} ${OceAtmFluxes2nd} ${AtmOceTemp} ${AtmOceTemp2nd} Runoff Calving Grids )
[4259]	156
[4186]	157	# Debugs
	158	#CommandList=( ${AtmOceFluxes} ${OceAtmTemp} Runoff Calving Grids )
[4199]	159	#CommandList=( ${AtmOceFluxes} Runoff Calving Grids )
[4317]	160	#CommandList=( ${AtmOceFluxes} ${OceAtmTemp} )
[4320]	161	#CommandList=( ${AtmOceFluxes} )
[4259]	162	#CommandList=( Runoff )
	163	#CommandList=( Runoff Calving Grids )
[4186]	164	#CommandList=( Calving )
	165	#CommandList=( Grids )
[4172]	166
[4402]	167	if [[ ${Version} = test_runoff_* ]] ; then
	168	CommandList=( Runoff )
	169	fi
	170
[3620]	171	## ===========================================================================
	172	##
	173	## You should not change anything below this line ....
	174	##
	175	## ===========================================================================
[4199]	176	Tag="MOSAIX"
[3620]	177	SUBMIT_DIR=$(pwd)
[4259]	178	FMT_XIOS=netcdf4
[4159]	179
	180	# Functions to handle command parameters
	181	# ======================================
[4153]	182	function read_Command {
	183	# Decipher the command line to set bash variables
	184	local l_Debug="no" l_Element
	185	while [[ ${1} = -* ]] ; do
	186	case ${1} in
	187	( -- ) shift ; break ;;
	188	( -d \| --debug ) l_Debug="true" ; shift ;;
	189	esac
	190	done
	191	local l_Command=${1}
[4159]	192	for l_Element in $(echo ${l_Command} \| tr "," "\n" ) ; do
[4153]	193	[[ "X${l_Debug}" = "Xtrue" ]] && echo ${l_Element}
	194	eval export ${l_Element}
	195	done
	196	}
[3620]	197
[4153]	198	function setValues {
[4317]	199	# Set default values
[4186]	200	read_Command "Direction=None,Order=None,Quantity=None,Renormalize=None,atmGrid=None,oceGrid=None,useArea=None,maskSrc=None,maskDst=None"
[4317]	201	# Read command line
[4186]	202	read_Command ${1}
	203	#
[4317]	204	oceGrid=${oceGrid,,} ; atmGrid=${atmGrid,,} # Model names to lower case
	205	OCEGRID=${oceGrid^^} ; ATMGRID=${atmGrid^^} # Model names to upper case
[4153]	206
	207	case ${Order} in
	208	( 1st ) numOrder=1 ;;
	209	( 2nd ) numOrder=2 ;;
	210	esac
	211	case ${Renormalize} in
	212	( true ) NormName=Normalized ;;
	213	( false ) NormName=UnNormalized ;;
	214	esac
	215	case ${Quantity} in
	216	( true ) QuantName=Integrated ;;
	217	( false ) QuantName=Surfacic ;;
	218	esac
	219	case ${useArea} in
	220	( true ) AreaName=Area ;;
	221	( false ) AreaName=NoArea ;;
	222	esac
	223
[4186]	224	if [[ "${Name}" != "None" ]] ; then
[4259]	225	FullName=${Name}_${Order}Order
[4186]	226	else
[4199]	227	FullName=${Order}Order_${NormName}_${QuantName}_${AreaName}
[4186]	228	fi
	229
[4153]	230	case ${Direction} in
	231	( o2a )
[4159]	232	src=${oce} ; SRC=${OCE} ; srcGrid=${oceGrid} ; srcDomainType=${oceDomainType} ; SRCGRID=${OCEGRID} ; srcArea=area_grid_${OCEGRID}
	233	dst=${atm} ; DST=${ATM} ; dstGrid=${atmGrid} ; dstDomainType=${atmDomainType} ; DSTGRID=${ATMGRID} ; dstArea=aire
[4153]	234	;;
	235	( a2o )
[4159]	236	src=${atm} ; SRC=${ATM} ; srcGrid=${atmGrid} ; srcDomainType=${atmDomainType} ; SRCGRID=${ATMGRID} ; srcArea=aire
	237	dst=${oce} ; DST=${OCE} ; dstGrid=${oceGrid} ; dstDomainType=${oceDomainType} ; DSTGRID=${OCEGRID} ; dstArea=area_grid_${OCEGRID}
[4153]	238	;;
	239	esac
[4186]	240	echo ${Green}"${SRC} ${SRCGRID} toward ${DST} ${DSTGRID} - ${Order} Order - Normalize: ${Renormalize} - Quantity: ${QuantName} - Area: ${AreaName} "${Norm}
[4199]	241	echo ${Green}"FullName : ${FullName}"${Norm}
[4153]	242	}
[4186]	243
[3620]	244	#
[5925]	245	#Defines computer
[3620]	246	# ================
[3901]	247	if [[ $(hostname) = irene* ]] ; then arch=irene ; center=tgcc ; fi
[4153]	248	if [[ $(hostname) = lsce* ]] ; then arch=spip ; center=spip ; fi
[3734]	249
[3620]	250	case ${arch} in
[4153]	251	( irene )
[3620]	252	set +vx
[4259]	253	set +e
[3966]	254	R_IN=$(ccc_home -u igcmg --cccwork)/IGCM
	255	TMPDIR=${CCCWORKDIR}/TMP
	256	SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR}}
[4172]	257	MpiRun="time ccc_mprun"
[4195]	258	PyRun="time ccc_mprun -n 1" # Needed to force python to run on one process only
[4259]	259	#module purge
	260	source $(ccc_home -u igcmg)/MachineEnvironment/irene/env_irene
[4153]	261	source ${SUBMIT_DIR}/arch.env
[4259]	262	#module load nco
[4172]	263	module load python3
[4153]	264	module load datadir/igcmg
[3966]	265	module list
[4259]	266	set -e
[3966]	267	;;
[3734]	268	( spip )
	269	R_IN=${HOME}/Scratch/IGCM
	270	TMPDIR=${HOME}/Scratch/TMP
	271	SUBMIT_DIR=$(pwd)
[4172]	272	MpiRun="/opt/local/bin/mpirun -n 4"
	273	PyRun="time"
[3734]	274	;;
[3901]	275	( * ) exit -1 ;;
[3620]	276	esac
	277
	278	set -x ; set -e
	279
[4195]	280	mkdir -p ${TMPDIR}/${CplModel} \|\| exit 1
	281	cd ${TMPDIR}/${CplModel} \|\| exit 1
[4146]	282	rm -fr *
[3620]	283
	284	#
	285	# Suffixes
	286	# ---------------------------------------------------------------------------
	287
	288	case ${OCE} in
[4153]	289	( ORC ) oce=orc ; oceDomainType=curvilinear ;;
[3620]	290	esac
[4159]	291
[3620]	292	case ${ATM} in
[4153]	293	( dynamico ) atm=ico ; atmDomainType=unstructured ;;
	294	( ICO ) atm=ico ; atmDomainType=unstructured ;;
	295	( lmd \| LMD ) atm=lmd ; atmDomainType=rectilinear ;;
[3620]	296	esac
	297
[4159]	298	case ${OCE} in # Periodicity type of ORCA grid
[5925]	299	( ORCA2* ) OcePerio=6 ;; # 4 ORCA 6 PALEORCA
[4172]	300	( ORCA1* \| eORCA1* ) OcePerio=6 ;;
[4298]	301	( ORCA025* \| eORCA025* ) OcePerio=6 ;;
[3723]	302	esac
[3620]	303	#
	304
[4195]	305	cp ${SUBMIT_DIR}/bin/interpol.exe .
	306	cp ${SUBMIT_DIR}/*.py .
[4153]	307	cp ${SUBMIT_DIR}/iodef_atm_to_oce.xml .
	308	cp ${SUBMIT_DIR}/iodef_oce_to_atm.xml .
[3620]	309
[5925]	310	#cp ${R_IN}/OCE/NEMO/${OCE}/${OCE}_coordinates_mask.nc .
	311	#cp ${SUBMIT_DIR}/${OCE}_coordinates_mask_ref.nc ${OCE}_coordinates_mask.nc
	312	#cp ${SUBMIT_DIR}/eORCA_R1_coordinates_mask_test_1105.nc ${OCE}_coordinates_mask.nc
	313	#cp ${SUBMIT_DIR}/TEST2REMOVE_coordinates_mask.test.nc ${OCE}_coordinates_mask.nc
	314	#cp ${SUBMIT_DIR}/TEST-CM61-LR-pi-01_mesh_mask.nc ${OCE}_coordinates_mask.nc
	315	#cp ${SUBMIT_DIR}/eORCA_R1_coordinates_mask_test_TUVW.nc ${OCE}_coordinates_mask.nc
	316	#cp ${SUBMIT_DIR}/eORCA_R1_coordinates_mask_test_1106.nc ${OCE}_coordinates_mask.nc
	317	#cp ${SUBMIT_DIR}/ORCA2.3_coordinates_mask_test_1106.nc ${OCE}_coordinates_mask.nc
	318	#cp ${SUBMIT_DIR}/coordinates_xios_ORCA2_1p_2806.nc ${OCE}_coordinates_mask.nc
	319	cp ${SUBMIT_DIR}/ORCA2.3_coordinates_mask_ref_0208.nc ${OCE}_coordinates_mask.nc
[3639]	320	cp ${R_IN}/ATM/GRID/${ATM}_grid.nc .
[3620]	321
[4317]	322	# Soucis a corriger plus tard
	323	if [[ ${ATM} = LMD9695 ]] ; then
	324	cat <<EOF > toDouble.nco
	325	lat = double (lat) ;
	326	lon = double (lon) ;
	327	aire = double (aire) ;
	328	fract_oce = double (fract_oce) ;
	329	fract_sic = double (fract_sic) ;
	330	fract_oce_plus_sic = double (fract_oce_plus_sic) ;
	331	EOF
	332	ncap2 --history --overwrite --script-file toDouble.nco ${ATM}_grid.nc tmp_${ATM}_grid.nc
	333	mv tmp_${ATM}_grid.nc ${ATM}_grid.nc
	334	fi
[3620]	335
[3912]	336
[3901]	337	##
[4172]	338	echo ${Titre}"NEMO T point towards ATM - 1st order"${Norm}
[3901]	339	## ===========================================================================
[4153]	340	echo "Command parameters : ${Command}"
[4186]	341	setValues ${DefaultValues}
[3620]	342
[4320]	343	OutFileName=${srcGrid}${src}_to_${dstGrid}${dst}_${FullName}
	344
[4153]	345	cp iodef_oce_to_atm.xml iodef.xml
	346
[4172]	347	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v maskutil_T
	348	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="area_src"]' -k name -v area_grid_T
	349	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType}
	350	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType}
	351	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1
	352	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v false
	353	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v false
	354	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v false
	355	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v maskutil_T
	356	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v area_grid_T
[4320]	357	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]' -k name -v dia_${OutFileName}
[4172]	358	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]' -t "${SRC} mask interpolated to ${DST}"
	359	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${srcDomainType}
	360	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]' -t ${dstDomainType}
	361	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]' -t 1
	362	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType}
	363	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType}
[4320]	364	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_${OutFileName}.nc
[4172]	365	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1
	366	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t false
	367	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]' -t false
	368	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="use_area"]' -t false
	369	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v false
	370	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v false
	371	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v false
[3620]	372
[4320]	373	cp iodef.xml iodef_${OutFileName}.xml
[3901]	374	ln -fs ${OCE}_coordinates_mask.nc oce_grid.nc
	375	ln -fs ${ATM}_grid.nc atm_grid.nc
[3620]	376
[4172]	377	${MpiRun} ./interpol.exe --mask_src=${maskSrc} --mask_dst=${maskDst} --use_area=${useArea}
	378
[4320]	379	ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" rmp_${OutFileName}.nc
	380	ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" dia_${OutFileName}.nc
	381
	382	ncatted --history --attribute normalization,global,o,c,"false" rmp_${OutFileName}.nc
	383	ncatted --history --attribute normalization,global,o,c,"false" dia_${OutFileName}.nc
	384
	385	ncatted --history --attribute Quantity,global,o,c,"false" rmp_${OutFileName}.nc
	386	ncatted --history --attribute Quantity,global,o,c,"false" dia_${OutFileName}.nc
	387
	388	ncatted --history --attribute UseArea,global,o,c,"false" rmp_${OutFileName}.nc
	389	ncatted --history --attribute UseArea,global,o,c,"false" dia_${OutFileName}.nc
	390
[3620]	391	##
[4172]	392	echo ${Titre}"Correct spurious values (extremes)"${Norm}
[3620]	393	## ===========================================================================
	394	cat <<EOF > correction_masque.nco
	395	where (OceFrac < 0.00001 ) OceFrac=OceFrac.get_miss() ;
	396	where (OceFrac > 0.99999 ) OceFrac=1.0 ;
	397	OceFrac.delete_miss() ;
	398	// Fill masked values to land values
	399	where (OceFrac > 1.0 ) OceFrac=0.0 ;
	400	where (OceFrac < 0.0 ) OceFrac=0.0 ;
[4298]	401	OceMask = OceFrac ;
[3620]	402	EOF
[4199]	403	ncap2 --history --overwrite --script-file correction_masque.nco dia_t${oce}_to_t${atm}_${FullName}.nc tmp_dia_t${oce}_to_t${atm}_${FullName}.nc ; mv tmp_dia_t${oce}_to_t${atm}_${FullName}.nc dia_t${oce}_to_t${atm}_${FullName}.nc
	404	ncatted --history -a missing_value,OceFrac,d,,"" -a _FillValue,OceFrac,d,,"" dia_t${oce}_to_t${atm}_${FullName}.nc
[4298]	405	ncatted --history -a missing_value,OceMask,d,,"" -a _FillValue,OceMask,d,,"" dia_t${oce}_to_t${atm}_${FullName}.nc
	406
[3620]	407	##
[4298]	408	echo ${Titre}"Creates mask on ATM grid"${Norm}
[3620]	409	## ===========================================================================
[4199]	410	cp dia_t${oce}_to_t${atm}_${FullName}.nc dia_t${oce}_to_t${atm}_${FullName}_mask.nc
[4298]	411	ncks --alphabetize --history --overwrite --variable OceFrac dia_t${oce}_to_t${atm}_${FullName}_mask.nc ${ATM}_grid_maskFrom_${OCE}.nc
[4317]	412	ncatted --history --attribute name,global,m,c,"${ATM}_grid_maskFrom_${OCE}.nc" ${ATM}_grid_maskFrom_${OCE}.nc
[3620]	413
	414	cat <<EOF > creation_masque.nco
[4298]	415	Oce2AtmMask = OceMask ;
	416	where (OceMask > 0.0 ) Oce2AtmMask=1 ;
	417	where (OceMask <= 0.0 ) Oce2AtmMask=0 ;
[3620]	418	EOF
[4081]	419
[4298]	420	ncap2 --history --overwrite --script-file creation_masque.nco dia_t${oce}_to_t${atm}_${FullName}.nc tmp_dia_${ATM}_grid_maskFrom_${OCE}.nc
	421	ncks --overwrite --history --variable OceMask,OceFrac,Oce2AtmMask tmp_dia_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
[3620]	422
[4081]	423	if [[ $(ncdump -h ${ATM}_grid_maskFrom_${OCE}.nc \| grep domain_dst \| wc -l) -gt 0 ]] ; then
[4317]	424	echo "Change dimension names, and some attributes accordingly"
	425	## ===========================================================
[4081]	426	case ${atm} in
	427	( ico )
[4088]	428	ncrename --history --dimension cell_domain_dst,cell ${ATM}_grid_maskFrom_${OCE}.nc
	429	ncrename --history --dimension nvertex_domain_dst,nvertex ${ATM}_grid_maskFrom_${OCE}.nc
	430	ncrename --history --variable lat_domain_dst,lat ${ATM}_grid_maskFrom_${OCE}.nc
	431	ncrename --history --variable lon_domain_dst,lon ${ATM}_grid_maskFrom_${OCE}.nc
	432	ncrename --history --variable bounds_lat_domain_dst,bounds_lat ${ATM}_grid_maskFrom_${OCE}.nc
	433	ncrename --history --variable bounds_lon_domain_dst,bounds_lon ${ATM}_grid_maskFrom_${OCE}.nc
	434	ncatted --history --attribute bounds,lat,m,c,"bounds_lat" ${ATM}_grid_maskFrom_${OCE}.nc
	435	ncatted --history --attribute bounds,lon,m,c,"bounds_lon" ${ATM}_grid_maskFrom_${OCE}.nc
[4081]	436	;;
[4317]	437	( lmd )
[5158]	438	ncrename --history --variable lon_domain_dst,lon ${ATM}_grid_maskFrom_${OCE}.nc
[4317]	439	ncrename --history --variable lat_domain_dst,lat ${ATM}_grid_maskFrom_${OCE}.nc
	440	ncrename --history --dimension lon_domain_dst,lon ${ATM}_grid_maskFrom_${OCE}.nc
	441	ncrename --history --dimension lat_domain_dst,lat ${ATM}_grid_maskFrom_${OCE}.nc
[4081]	442	;;
	443	esac
	444	ncatted --history --attribute coordinates,OceFrac,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc
	445	ncatted --history --attribute coordinates,OceMask,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc
[4298]	446	ncatted --history --attribute coordinates,Oce2AtmMask,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc
[4317]	447
	448	ncatted --history --attribute long_name,OceFrac,c,c,"fraction of ocean in a grid cell" ${ATM}_grid_maskFrom_${OCE}.nc
	449	ncatted --history --attribute units,OceFrac,c,c,"[0,1]" ${ATM}_grid_maskFrom_${OCE}.nc
	450	ncatted --history --attribute long_name,OceMask,c,c,"fraction of ocean in a grid cell" ${ATM}_grid_maskFrom_${OCE}.nc
	451	ncatted --history --attribute units,OceMask,c,c,"[0,1]" ${ATM}_grid_maskFrom_${OCE}.nc
	452	ncatted --history --attribute long_name,Oce2AtmMask,c,c,"land mask" ${ATM}_grid_maskFrom_${OCE}.nc
	453	ncatted --history --attribute units,Oce2AtmMask,c,c,"Land:0, Ocean:1" ${ATM}_grid_maskFrom_${OCE}.nc
[4088]	454
[4081]	455	fi
	456
[4320]	457	ncks --history --alphabetize --append --variable aire atm_grid.nc ${ATM}_grid_maskFrom_${OCE}.nc
[4317]	458	ncatted --history --attribute units,aire,m,c,"m^2" ${ATM}_grid_maskFrom_${OCE}.nc
	459
[4081]	460	[[ ${atm} = ico ]] && ncks --alphabetize --history --append --variable bounds_lon,bounds_lat atm_grid.nc ${ATM}_grid_maskFrom_${OCE}.nc
	461
[4298]	462
[4320]	463
[4298]	464	##
[4199]	465	#echo ${Titre}"Creates mask of coastal OCE points"${Norm}
[3901]	466	## ===========================================================================
[4199]	467	#${PyRun} python3 -u ComputeNemoCoast.py -n ${OcePerio} -i ${OCE}_coordinates_mask.nc # Creates OceCoastal
[4172]	468
[3901]	469	##
[4199]	470	#echo ${Titre}"Creates mask of coastal ATM points"${Norm}
[3901]	471	## ===========================================================================
[4199]	472	#cat <<EOF > coastal.nco
	473	#AtmCoastal = OceFrac * 0.0 ;
	474	#where (OceFrac > 0.0 && OceFrac < 1.0 ) AtmCoastal = 1.0 ;
	475	#EOF
	476	#ncap2 --history --overwrite --script-file coastal.nco ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_coastal_maskFrom_${OCE}.nc
	477	#ncks --history --append --variable AtmCoastal ${ATM}_coastal_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
	478	#rm ${ATM}_coastal_maskFrom_${OCE}.nc
[4081]	479
[3901]	480	##
[4172]	481	echo ${Titre}"Other weights files"${Norm}
[3718]	482	## ===========================================================================
[4153]	483	# Loop on commands
	484	for Command in ${CommandList[@]}
	485	do
	486	echo "Command parameters : ${Command}"
[4186]	487	setValues ${Command}
[4172]	488	if [[ ${Command} = "Runoff" ]] ; then okRunoff=yes ; continue ; fi
	489	if [[ ${Command} = "Calving" ]] ; then okCalving=yes ; continue ; fi
[4186]	490	if [[ ${Command} = "Grids" ]] ; then okGrids=yes ; continue ; fi
[4172]	491
[4153]	492	ln -fs ${OCE}_coordinates_mask.nc oce_grid.nc
[4298]	493	#ln -fs ${ATM}_grid.nc atm_grid.nc
	494	ln -fs ${ATM}_grid_maskFrom_${OCE}.nc atm_grid.nc
[4153]	495
	496	case ${Direction} in
	497	( o2a )
	498	cp iodef_oce_to_atm.xml iodef.xml
[4082]	499
[4317]	500	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v maskutil_${DSTGRID}
[4298]	501	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]' -k name -v Oce2AtmMask
[4082]	502
[4172]	503	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v maskutil_${SRCGRID}
	504	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v area_grid_${SRCGRID}
[4298]	505	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="mask_dest"]' -k name -v Oce2AtmMask
[4172]	506	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="area_dest"]' -k name -v aire
[4153]	507	;;
	508	( a2o )
	509	cp iodef_atm_to_oce.xml iodef.xml
[4082]	510
[4298]	511	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v Oce2AtmMask
[4172]	512	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]' -k name -v mask_${DSTGRID}
[4082]	513
[4298]	514	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v Oce2AtmMask
[4172]	515	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v aire
	516	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="mask_dest"]' -k name -v mask_${DSTGRID}
	517	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="area_dest"]' -k name -v area_grid_${DSTGRID}
[4153]	518	;;
	519	esac
[4320]	520
	521	OutFileName=${srcGrid}${src}_to_${dstGrid}${dst}_${FullName}
[4153]	522
[4172]	523	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType}
	524	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType}
[4153]	525
[4172]	526	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType}
	527	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType}
[4153]	528
[4320]	529	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_${OutFileName}.nc
[4172]	530	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v ${numOrder}
	531	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v ${Quantity}
	532	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v ${Renormalize}
	533	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v ${useArea}
[4153]	534
[4320]	535	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]' -k name -v dia_${OutFileName}
[4172]	536	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]' -t "${SRC} mask interpolated to ${DST}"
	537	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]' -t ${dstDomainType}
	538	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${srcDomainType}
	539	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t ${Renormalize}
	540	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]' -t ${numOrder}
	541	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]' -t ${Quantity}
	542	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="use_area"]' -t ${useArea}
[4153]	543
[4320]	544	cp iodef.xml iodef_${OutFileName}.xml
[4172]	545	${MpiRun} ./interpol.exe --mask_src=${maskSrc} --mask_dst=${maskDst} --use_area=${useArea}
[4320]	546
	547	case ${numOrder} in
	548	( 1 )
	549	ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" rmp_${OutFileName}.nc
	550	ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" dia_${OutFileName}.nc
	551	;;
	552	( 2 )
	553	ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 2nd order" rmp_${OutFileName}.nc
	554	ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 2nd order" dia_${OutFileName}.nc
	555	;;
	556	esac
	557
	558	ncatted --history --attribute normalization,global,o,c,"${Renormalize}" rmp_${OutFileName}.nc
	559	ncatted --history --attribute normalization,global,o,c,"${Renormalize}" dia_${OutFileName}.nc
	560
	561	ncatted --history --attribute Quantity,global,o,c,"${Quantity}" rmp_${OutFileName}.nc
	562	ncatted --history --attribute Quantity,global,o,c,"${Quantity}" dia_${OutFileName}.nc
	563
	564	ncatted --history --attribute UseArea,global,o,c,"${useArea}" rmp_${OutFileName}.nc
	565	ncatted --history --attribute UseArea,global,o,c,"${useArea}" dia_${OutFileName}.nc
	566
[3719]	567	done
[4153]	568
[3620]	569	##
[4172]	570	echo ${Titre}"Add some metadata in file headers"${Norm}
[3620]	571	## ===========================================================================
	572
	573	NCO="$(ncks --version \|& tail -1\|sed 's/ncks //')"
[4172]	574	PYTHON_VER=$( python3 -c "import sys ; print (sys.version.split(' ')[0])" )
[4199]	575	for InFile in $(ls ${oce}_to_${atm}_.nc ${atm}_to_${oce}_.nc ${ATM}_grid_maskFrom_${OCE}.nc 2> /dev/null) ; do
[3639]	576	ncatted --history \
[3620]	577	--attribute LongName,global,d,, \
	578	--attribute nco_openmp_thread_number,global,d,, \
	579	--attribute Conventions,global,o,c,"CF-1.6" \
	580	--attribute source,global,o,c,"IPSL Earth system model" \
	581	--attribute group,global,o,c,"ICMC IPSL Climate Modelling Center" \
	582	--attribute Institution,global,o,c,"IPSL https://www.ipsl.fr" \
	583	--attribute Ocean,global,o,c,"${OCE} https://www.nemo-ocean.eu" \
	584	--attribute Atmosphere,global,o,c,"${ATM} http://lmdz.lmd.jussieu.fr" \
	585	--attribute production,global,o,c,"$(finger ${LOGNAME} \| head -1 \| awk '{print $4, $5}') " \
	586	--attribute originalFiles,global,o,c,"${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc" \
[4195]	587	--attribute associatedFiles,global,o,c,"grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc" \
[3620]	588	--attribute directory,global,o,c,"$(pwd)" \
	589	--attribute description,global,o,c,"Fields needed by OASIS-MCT" \
	590	--attribute title,global,o,c,"${InFile}.nc" \
[4320]	591	--attribute Program,global,o,c,"Generated by CreateWeightsMask" \
[3620]	592	--attribute timeStamp,global,o,c,"$(date)" \
	593	--attribute HOSTNAME,global,o,c,"$(hostname)" \
	594	--attribute LOGNAME,global,o,c,"$(whoami)" \
	595	--attribute NCO,global,o,c,"NCO netCDF Operator ${NCO} http://nco.sourceforge.net" \
[4172]	596	--attribute Python,global,o,c,"Python3 version ${PYTHON_VER}" \
[3620]	597	--attribute OS,global,o,c,"$(uname -o)" \
	598	--attribute release,global,o,c,"$(uname -r)" \
	599	--attribute directory,global,o,c,"$(pwd)" \
[3624]	600	--attribute description,global,o,c,"Generated with XIOS http://forge.ipsl.jussieu.fr/ioserver and MOSAIX https://forge.ipsl.jussieu.fr/igcmg/browser/TOOLS/MOSAIX" \
[4090]	601	--attribute SVN_Author,global,o,c,'$Author$' \
	602	--attribute SVN_Date,global,o,c,'$Date$' \
	603	--attribute SVN_Revision,global,o,c,'$Revision$' \
	604	--attribute SVN_Id,global,o,c,'$Id$' \
[3620]	605	${InFile}
	606	done
[4320]	607
	608	# Duplicate with no global attribute to avoid erasing attributes in other files
	609	cp ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_noglobal.nc
	610	ncatted --history --attribute ,global,d,c, ${ATM}_grid_maskFrom_${OCE}_noglobal.nc
	611
[3620]	612	##
[4172]	613	echo ${Titre}"Update and complete weight files to fit OASIS requested format"${Norm}
[3620]	614	## ===========================================================================
	615	cat <<EOF > add_dim.nco
	616	defdim("num_wgts",1) ;
	617	weight[n_weight, num_wgts] = weight ;
	618	EOF
	619
[3719]	620	for rmpFile in rmp_*.nc ; do
[4199]	621	mv ${rmpFile} tmp_${rmpFile}
	622	ncap2 --history --script-file add_dim.nco tmp_${rmpFile} ${rmpFile} ; rm tmp_${rmpFile}
[3620]	623
[3719]	624	ncrename --history --dimension n_weight,num_links ${rmpFile}
	625	ncrename --history --variable src_idx,src_address ${rmpFile}
	626	ncrename --history --variable dst_idx,dst_address ${rmpFile}
	627	ncrename --history --variable weight,remap_matrix ${rmpFile}
[4320]	628
	629
[3719]	630	ncatted --history --attribute conventions,global,o,c,"SCRIP" ${rmpFile}
	631	ncatted --history --attribute normalization,global,o,c,"none" ${rmpFile}
[3620]	632
[3719]	633	case ${rmpFile} in
[3620]	634	( rmp_${oce}_to_t${atm}_ )
[3639]	635	ncatted --history \
[3620]	636	--attribute title,global,o,c,"Weights ${OCE} to ${ATM}" \
[4153]	637	--attribute source_grid,global,o,c,"${oceDomainType}" \
	638	--attribute dest_grid,global,o,c,"${atmDomainType}" \
[3719]	639	${rmpFile}
[3620]	640	;;
	641	( rmp_${atm}_to_${oce}_* )
[3639]	642	ncatted --history \
[3620]	643	--attribute title,global,o,c,"Weights ${ATM} to ${OCE}" \
[4153]	644	--attribute source_grid,global,o,c,"${atmDomainType}" \
	645	--attribute dest_grid,global,o,c,"${oceDomainType}" \
[3719]	646	${rmpFile}
[3620]	647	;;
	648	esac
	649	done
	650
[4186]	651	ls
[3620]	652	##
[4172]	653	echo ${Titre}"Add missing variables in rmp files"${Norm}
[3639]	654	## ===========================================================================
[4259]	655	for rmpFile in $(ls rmp_?${atm}_to_[tuv]${oce}_.nc rmp_[tuv]${oce}_to_t${atm}_.nc 2> /dev/null ) ; do
[3901]	656	echo ${rmpFile}
[3719]	657	a_to_o=false ; o_to_a=false
	658	case ${rmpFile} in
	659	( rmp_?${oce}_to_?${atm}_*.nc ) o_to_a=true ;;
	660	( rmp_?${atm}_to_?${oce}_*.nc ) a_to_o=true ;;
	661	esac
	662
[3901]	663	for Grid in t u v o c ; do # Identify grids
	664	[[ ${rmpFile} = rmp_${Grid}${oce}_to_?${atm}_*.nc ]] && ogrid=${Grid}
	665	[[ ${rmpFile} = rmp_?${oce}_to_${Grid}${atm}_*.nc ]] && agrid=${Grid}
	666	[[ ${rmpFile} = rmp_${Grid}${atm}_to_?${oce}_*.nc ]] && agrid=${Grid}
	667	[[ ${rmpFile} = rmp_?${atm}_to_${Grid}${oce}_*.nc ]] && ogrid=${Grid}
[3719]	668	done
	669	OGRID=${ogrid^}
	670	AGRID=${agrid^}
[3639]	671
[3719]	672	cat <<EOF >add_varoce.nco
[3639]	673	defdim ("src_grid_size" , \$x_grid_${OGRID}.size*\$y_grid_${OGRID}.size) ;
	674	defdim ("src_grid_corners", 4) ;
	675	defdim ("src_grid_rank" , 2) ;
	676	//
	677	src_grid_dims[src_grid_rank] = { \$y_grid_${OGRID}.size, \$x_grid_${OGRID}.size } ;
	678	//
	679	src_grid_center_lat [src_grid_size] = 0.0d ;
	680	src_grid_center_lon [src_grid_size] = 0.0d ;
	681	src_grid_center_lat (:) = nav_lat_grid_${OGRID}(:,:) ;
	682	src_grid_center_lon (:) = nav_lon_grid_${OGRID}(:,:) ;
	683	//
	684	src_grid_corner_lat [src_grid_size, src_grid_corners] = 0.0d ;
	685	src_grid_corner_lon [src_grid_size, src_grid_corners] = 0.0d ;
	686	src_grid_corner_lat(:,:) = bounds_lat_grid_${OGRID}(:,:,:) ;
	687	src_grid_corner_lon(:,:) = bounds_lon_grid_${OGRID}(:,:,:) ;
	688	//
	689	src_grid_imask [src_grid_size] = 0 ;
	690	src_grid_area [src_grid_size] = 0.0d ;
	691	src_grid_frac [src_grid_size] = 1.0d ;
	692	src_grid_imask (:) = 1 - mask_${OGRID}(:,:) ;
	693	src_grid_imask.int() ;
	694	src_grid_area (:) = area_grid_${OGRID}(:,:) ;
	695	EOF
	696
[4146]	697	cp add_varoce.nco add_varoce_$(basename ${rmpFile} .nc)_o_to_a.nco
[4199]	698	[[ ${o_to_a} = true ]] && ncap2 --history --append --script-file add_varoce_$(basename ${rmpFile} .nc)_o_to_a.nco ${OCE}_coordinates_mask.nc ${rmpFile}
[3719]	699	sed --in-place "s/src_/dst_/g" add_varoce.nco
[4146]	700	cp add_varoce.nco add_varoce_$(basename ${rmpFile} .nc)_a_to_o.nco
[4199]	701	[[ ${a_to_o} = true ]] && ncap2 --history --append --script-file add_varoce_$(basename ${rmpFile} .nc)_a_to_o.nco ${OCE}_coordinates_mask.nc ${rmpFile}
[3719]	702
	703	if [[ ${atm} = ico ]] ; then
	704	cat <<EOF >add_varatm.nco
[3639]	705	defdim ("dst_grid_size" , \$cell.size) ;
	706	defdim ("dst_grid_corners", 6) ;
	707	defdim ("dst_grid_rank" , 2) ;
	708	//
	709	dst_grid_dims[dst_grid_rank] = { \$cell.size, 1 } ;
	710	//
	711	dst_grid_center_lat [dst_grid_size] = 0.0d ;
	712	dst_grid_center_lon [dst_grid_size] = 0.0d ;
	713	dst_grid_center_lat (:) = lat(:) ;
	714	dst_grid_center_lon (:) = lon(:) ;
	715	//
	716	dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ;
	717	dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ;
	718	dst_grid_corner_lat(:,:) = bounds_lat(:,:) ;
	719	dst_grid_corner_lon(:,:) = bounds_lon(:,:) ;
	720	//
	721	dst_grid_imask [dst_grid_size] = 0 ;
	722	dst_grid_area [dst_grid_size] = 0.0d ;
	723	dst_grid_frac [dst_grid_size] = 1.0d ;
[4298]	724	dst_grid_imask (:) = 1 - Oce2AtmMask(:) ;
[3639]	725	dst_grid_imask.int() ;
	726	dst_grid_area (:) = aire(:) ;
[4259]	727	dst_grid_frac (:) = OceFrac(:) ;
[3639]	728	EOF
[4146]	729	cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco
[3719]	730	if [[ ${o_to_a} = true ]] ; then
[4320]	731	ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco ${ATM}_grid_maskFrom_${OCE}_noglobal.nc ${rmpFile}
[3719]	732	ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
	733	mv rmp_tmp.nc ${rmpFile}
	734	fi
[3718]	735
[3719]	736	sed --in-place "s/dst_/src_/g" add_varatm.nco
[4146]	737	cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco
[3719]	738	if [[ ${a_to_o} = true ]] ; then
[4320]	739	ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco ${ATM}_grid_maskFrom_${OCE}_noglobal.nc ${rmpFile}
[3719]	740	ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
	741	mv rmp_tmp.nc ${rmpFile}
	742	fi
	743	fi
[3966]	744
[3719]	745	if [[ ${atm} = lmd ]] ; then
	746	cat <<EOF >add_varatm.nco
[3639]	747	defdim ("dst_grid_size" , \$lon.size*\$lat.size) ;
	748	defdim ("dst_grid_corners", 4) ;
	749	defdim ("dst_grid_rank" , 2) ;
	750	//
	751	dst_grid_dims[dst_grid_rank] = { \$lat.size, \$lon.size } ;
	752	//
	753	dst_grid_center_lat [dst_grid_size] = 0.0d ;
	754	dst_grid_center_lon [dst_grid_size] = 0.0d ;
	755	lat0lon[lat,lon] = lat(:)+0*lon(:) ;
	756	lon0lat[lat,lon] = lon(:)+0*lat(:) ;
	757	dst_grid_center_lat (:) = lat0lon(:,:) ;
	758	dst_grid_center_lon (:) = lon0lat(:,:) ;
	759	//
	760	//dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ; // Not available for LMDZ lon/lat grid
	761	//dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ;
	762	//dst_grid_corner_lat(:,:) = bounds_lat(:,:) ;
	763	//dst_grid_corner_lon(:,:) = bounds_lon(:,:) ;
	764	//
	765	dst_grid_imask [dst_grid_size] = 0 ;
	766	dst_grid_area [dst_grid_size] = 0.0d ;
	767	dst_grid_frac [dst_grid_size] = 1.0d ;
[4298]	768	dst_grid_imask (:) = 1 - Oce2AtmMask(:,:) ;
[3639]	769	dst_grid_imask.int() ;
	770	dst_grid_area (:) = aire(:,:) ;
[4259]	771	dst_grid_frac (:) = OceFrac(:,:) ;
[3639]	772	EOF
[4146]	773	cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco
[3719]	774	if [[ ${o_to_a} = true ]] ; then
[4320]	775	ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco ${ATM}_grid_maskFrom_${OCE}_noglobal.nc ${rmpFile}
[3719]	776	ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
	777	mv rmp_tmp.nc ${rmpFile}
	778	fi
	779
	780	sed --in-place "s/dst/src/g" add_varatm.nco
[4146]	781	cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco
[3719]	782	if [[ ${a_to_o} = true ]] ; then
[4320]	783	ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco ${ATM}_grid_maskFrom_${OCE}_noglobal.nc ${rmpFile}
[3719]	784	ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
	785	mv rmp_tmp.nc ${rmpFile}
	786	fi
	787	fi
[3639]	788	done
[3901]	789	ls -al ${OCE}_coordinates_mask.nc
[3639]	790	##
[4186]	791	## ============================================================================
[4172]	792	echo ${Titre}"Creates and save auxiliary files for OASIS : grids.nc, areas.nc and masks.nc"${Norm}
[4186]	793	cp ${SUBMIT_DIR}/CreateOasisGrids.bash .
	794	bash CreateOasisGrids.bash --oce ${OCE} --atm ${ATM}
[4097]	795
	796
	797	##
[4172]	798	echo ${Titre}"Runoff weights"${Norm}
[4097]	799	## ===========================================================================
[4186]	800	if [[ "X${okRunoff}" = "Xyes" ]] ; then
[4195]	801	${PyRun} python3 -u RunoffWeights.py --oce=${OCE} --atm=${ATM} \
[4172]	802	--atmCoastWidth=${atmCoastWidth} --oceCoastWidth=${oceCoastWidth} --searchRadius=${searchRadius} \
[4195]	803	--grids=grids_${CplModel}.nc --areas=areas_${CplModel}.nc --masks=masks_${CplModel}.nc \
[4199]	804	--o2a=${ATM}_grid_maskFrom_${OCE}.nc --output=rmp_t${atm}_to_t${oce}_runoff_${runOff_atmQuantity}_to_${runOff_oceQuantity}.nc \
	805	--fmt=${FMT_XIOS} \
[5925]	806	--atmQuantity=${runOff_atmQuantity} --oceQuantity=${runOff_oceQuantity} --ocePerio=${OcePerio}
[4172]	807	fi
[4097]	808
	809	##
[4172]	810	echo ${Titre}"Calving weights"${Norm}
[3620]	811	## ===========================================================================
[4172]	812	if [[ "X${okCalving}" = "Xyes" ]] ; then
	813	case ${OCE} in
[4298]	814	( eORCA025* )
[4186]	815	cp /ccc/work/cont003/gencmip6/deshayej/eORCA_R025_runoff_v1.2.nc .
[4199]	816	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_nosouth.nc --fmt=${FMT_XIOS} \
[4186]	817	--oce=${OCE} --atm=${ATM} --type=nosouth --dir=.
[4199]	818	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceberg.nc --fmt=${FMT_XIOS} \
[4186]	819	--oce=${OCE} --atm=${ATM} --type=iceberg --dir=. --repartition_file=eORCA_R025_runoff_v1.2.nc --repartition_var=Icb_flux
[4199]	820	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceshelf.nc --fmt=${FMT_XIOS} \
[4186]	821	--oce=${OCE} --atm=${ATM} --type=iceshelf --dir=. --repartition_file=eORCA_R025_runoff_v1.2.nc --repartition_var=sornfisf
[4172]	822	;;
	823
	824	( eORCA1.2 )
	825	cp ${R_IN}/OCE/NEMO/ORCA1_LIM3_PISCES/v3.6_stable/runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc .
[4199]	826	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_nosouth.nc --fmt=${FMT_XIOS}\
[4172]	827	--oce=${OCE} --atm=${ATM} --type=nosouth --dir=.
[4199]	828	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceberg.nc --fmt=${FMT_XIOS}\
[4172]	829	--oce=${OCE} --atm=${ATM} --type=iceberg --dir=. --repartition_file=runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc --repartition_var=Icb_flux
[4199]	830	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceshelf.nc --fmt=${FMT_XIOS}\
[4172]	831	--oce=${OCE} --atm=${ATM} --type=iceshelf --dir=. --repartition_file=runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc --repartition_var=sornfisf
	832	;;
	833
	834	( * )
[4199]	835	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_full.nc --fmt=${FMT_XIOS} \
[5925]	836	--oce=${OCE} --atm=${ATM} --type=full --dir=. --ocePerio=${OcePerio}
[4172]	837	;;
	838
	839	esac
	840	fi
	841
	842	##
[4199]	843	echo ${Titre}"Simplifies headers, add version and comment"${Norm}
[4172]	844	## ===========================================================================
[4199]	845	for File in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
[4037]	846	ncatted --history --attribute history_of_appended_files,global,d,c,"" ${File}
[4199]	847	ncatted --history --attribute history,global,d,c,"" ${File}
[4172]	848	[[ "X${Comment}" != "X" ]] && ncatted --history --attribute Comment,global,o,c,"${Comment}" ${File}
	849	[[ "X${Version}" != "X" ]] && ncatted --history --attribute Version,global,o,c,"${Version}" ${File}
[4199]	850	[[ "X${Tag}" != "X" ]] && ncatted --history --attribute Version,global,o,c,"${Tag}" ${File}
	851	done
	852
	853	##
	854	echo ${Titre}"Rename rmp and dia files"${Norm}
	855	## ===========================================================================
[4259]	856	for File in $(ls ${oce}${atm}* ${atm}${oce}* 2> /dev/null ); do
[3719]	857	NewFile=$(echo ${File} \| sed -e "s/${atm}/${ATM}/" -e "s/${oce}/${OCE}/" )
[4259]	858	mv ${File} ${NewFile}
[3620]	859	done
	860
[4199]	861	##
	862	echo ${Titre}"Add Tag"${Norm}
	863	## ===========================================================================
	864	if [[ "X${Tag}" != "X" ]] ; then
	865	for File in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
	866	mv ${File} $(basename ${File} .nc)_${Tag}.nc
	867	done
[4186]	868	fi
[4199]	869	##
	870	echo ${Titre}"Add Version"${Norm}
	871	## ===========================================================================
	872	if [[ "X${Version}" != "X" ]] ; then
	873	for File in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
	874	mv ${File} $(basename ${File} .nc)_${Version}.nc
	875	done
	876	fi
	877
	878	## ===========================================================================
	879	echo ${Titre}"Save results"${Norm}
	880	## ===========================================================================
	881	for File in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
	882	cp ${File} ${SUBMIT_DIR}
	883	done
[4172]	884
[4199]	885
[3620]	886	##
[4172]	887	echo ${Titre}"Creates a README.txt file"${Norm}
[4090]	888	## ===========================================================================
	889	[[ -f README.txt ]] && rm README.txt
[4298]	890	UUID=$(uuid)
[3620]	891
[4090]	892	cat <<EOF > README.txt
	893	Files produced by CreateWeightsMask.bash and CreateOasisGrids.bash
	894
	895	rmp_* are weights files
	896	dia_* are diagnostic files not needed for the coupler
[4195]	897	grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc are auxiliary file needed by OASIS-MCT
[4090]	898	All files have the same uuid in the global attributes
	899
	900	Description : Weigths and auxiliary files for coupling ${OCE} and ${ATM} needed by OASIS-MCT
	901	Conventions : CF-1.6
	902	source : IPSL Earth system model
	903	group : ICMC IPSL Climate Modelling Center
	904	Institution : IPSL https://www.ipsl.fr
	905	Ocean : ${OCE} https://www.nemo-ocean.eu
	906	Atmosphere : ${ATM} http://lmdz.lmd.jussieu.fr
	907	production : $(finger ${LOGNAME} \| head -1 \| awk '{print $4, $5}')
	908	originalFiles : ${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc
[4195]	909	associatedFiles : grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc
[4090]	910	directory : $(pwd)
	911	timeStamp : $(date)
	912	uuid : ${UUID}
	913	HOSTNAME : $(hostname)
	914	LOGNAME : $(whoami)
	915	NCO : NCO netCDF Operator ${NCO} http://nco.sourceforge.net
	916	Python version : ${PYTHON_VER}
	917	OS : $(uname -o)
	918	release : $(uname -r)
	919	hardware : $(uname -i)
[4091]	920	EOF
[4090]	921
[4091]	922	echo 'SVN Information : ' >> README.txt
	923	echo '$Author$ ' >> README.txt
	924	echo '$Date$ ' >> README.txt
	925	echo '$Revision$ ' >> README.txt
	926	echo '$Id$ ' >> README.txt
	927	echo '$HeadURL$ ' >> README.txt
[4090]	928
[4172]	929	echo ${Titre}"Compute checksums and add them to README"${Norm}
[4199]	930	# ------------------------------------------------------------
[4091]	931	cat << EOF >> README.txt
[4090]	932
[4159]	933	Files produced, with checksum produced by Unix command shasum (version $(shasum --version)) with default algorithm
[4090]	934
	935	EOF
	936
[4199]	937	for file in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
[4320]	938	ncatted --history --attribute uuid,global,o,c,"${UUID}" ${file}
[4090]	939	echo "$(shasum ${file})" >> README.txt
	940	done
	941
	942	cat <<EOF >> README.txt
	943
	944	================= That's all folk's ! ========================
	945	EOF
	946
[4259]	947	if [[ "X${Version}" != "X" ]] ; then
	948	cp README.txt ${SUBMIT_DIR}/README_${CplModel}_MOSAIX_${Version}.txt
	949	else
	950	cp README.txt ${SUBMIT_DIR}/README_${CplModel}_MOSAIX.txt
	951	fi
[3620]	952	## ===========================================================================
	953	##
[4172]	954	echo ${Titre}" That's all folk's !!! "${Norm}
[3620]	955	##
	956	## ===========================================================================
	957

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