Context Navigation

source: TOOLS/MOSAIX/CreateWeightsMask.bash @ 4259

Last change on this file since 4259 was 4259, checked in by omamce, 5 years ago

O.M. : MOSAIX

Two versions of fraction on atmosphere grid to be compatible with both DYNAMICO and LMDZ
Various improvments

Property svn:executable set to *
Property svn:keywords set to Date Revision HeadURL Author Id

File size: 45.9 KB

Rev	Line
[3620]	1	#!/bin/bash
[3719]	2	#MSUB -r WeightsMask # Job name
	3	#MSUB -o Out_WeightsMask # Standard output
	4	#MSUB -e Out_WeightsMask # Error output
[3620]	5	#MSUB -eo
[4159]	6	#MSUB -n 16 # Number of processors
[4186]	7	#MSUB -T 7200 # Time limit (seconds)
[3966]	8	#MSUB -q skylake
	9	#MSUB -p gen2212
	10	#MSUB -m work
[3620]	11
	12	### ===========================================================================
	13	###
[3719]	14	### Creates interpolation weights between ORCA and atmosphere grids.
[3620]	15	### Interpolates ORCA mask to atmosphere grid.
	16	### Weight files are at OASIS-MCT format.
	17	###
	18	### Atmosphere grid may be lon/lat LMDZ or DYNAMICO icosahedron
[3627]	19	###
	20	### Documentation : https://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM6/MOSAIX
[3620]	21	### ===========================================================================
	22	##
	23	## Warning, to install, configure, run, use any of Olivier Marti's
	24	## software or to read the associated documentation you'll need at least
	25	## one (1) brain in a reasonably working order. Lack of this implement
	26	## will void any warranties (either express or implied).
	27	## O. Marti assumes no responsability for errors, omissions,
	28	## data loss, or any other consequences caused directly or indirectly by
	29	## the usage of his software by incorrectly or partially configured
	30	## personal.
	31	##
[3623]	32	## SVN information
[3665]	33	# $Author$
	34	# $Date$
	35	# $Revision$
	36	# $Id$
[3632]	37	# $HeadURL$
[4090]	38	#
[4195]	39	# CplModel=eORCA1.2xLMD144142 ; qsub -r ${CplModel} -o Out_${CplModel} -e Out_${CplModel} CreateWeightsMask.bash
	40	#
	41
[4172]	42	set +vx
[3901]	43	export Bold=$(tput bold)
	44	export Unde=$(tput smul) ; export OffUnde=$(tput rmul)
	45	export Stou=$(tput smso) ; export OffStou=$(tput rmso)
	46	export Reve=$(tput rev )
	47	couleurs=( "Black" "Blue" "Green" "Cyan" "Red" "Magenta" "Yellow" "White" )
[4259]	48	for i in $(seq 0 7) ; do eval "export ${couleurs[$i]}=$(tput setf ${i})" ; done
[4186]	49	export Norm=$(tput sgr0)
[4172]	50	export Titre=${Bold}${Blue}
[3620]	51
	52	##
	53	## Configuration
	54	## ===========================================================================
[4159]	55	set -e
[3620]	56
	57	#
[4172]	58	echo ${Titre}"Defines models"${Norm}
[4199]	59	# ==================================
[4259]	60	#OCE=ORCA2.3
	61	OCE=eORCA1.2
[4172]	62	#OCE=eORCA025
[3620]	63
[4259]	64	#ATM=ICO30
[4195]	65	#ATM=ICO40
[3620]	66	#ATM=ICO450
[4186]	67	#ATM=LMD9695
[4259]	68	ATM=LMD144142
[4172]	69	#ATM=LMD256256
[3620]	70
[4199]	71
	72	Comment="Preliminary attempt - Do not trust !"
	73	Version="v0"
	74
[4195]	75	CplModel=${OCE}x${ATM}
	76	if [[ X${SLURM_JOB_NAME} = XORC \|\| X${SLURM_JOB_NAME} = XLMD \|\| X${SLURM_JOB_NAME} = XICO ]] ; then
	77	CplModel=${SLURM_JOB_NAME} ; OCE=${CplModel//x} ; ATM=${CplModel##x}
	78	fi
	79
[4186]	80	echo ${Titre}"ATM model : ${ATM}"${Norm}
	81	echo ${Titre}"OCE model : ${OCE}"${Norm}
[4195]	82	echo ${Titre}"Cpl model : ${CplModel}"${Norm}
[4172]	83
[4186]	84	# Runoff parameter. atmCoastWidth and oceCoastWidth in grid points, searchRadius in km
	85	atmCoastWidth=2 ; oceCoastWidth=2 ; searchRadius=600.0
	86	runOff_atmQuantity=Quantity runOff_oceQuantity=Surfacic
[4172]	87
[4186]	88	[[ ${ATM} = ICO* ]] && atmCoastWidth=0 # Parameter relevant for LMD rectilinear grid only
	89	[[ ${ATM} = LMD* ]] && atmCoastWidth=2
	90	[[ ${OCE} = ORCA2.3 ]] && oceCoastWidth=1
	91	[[ ${OCE} = eORCA1.2 ]] && oceCoastWidth=3
	92	[[ ${OCE} = eORCA025 ]] && oceCoastWidth=1
	93
	94
[4153]	95	# Default values, used to create ocean fraction on atmospheric grid
[4186]	96	DefaultValues=( Direction=o2a,oceGrid=t,atmGrid=t,Order=1st,Quantity=false,Renormalize=false,useArea=false,maskSrc=true,maskDst=false,Name=OceFrac )
[3620]	97
[4172]	98	## List of weights to build
	99	## ====================================================================================================================================
	100	#
	101	# Each item in CommandList describes the properties of interpolation weights to generate.
[4159]	102	# White spaces separate analysis. No spaces in any analysis.
	103	#
[4172]	104	# Specific commands : 'Runoff', 'Calving'
	105	#
[4159]	106	# Keywords :
	107	# Direction : o2a for ocean to atmosphere, a2o for atmosphere to ocean
	108	# Order : 1st or 2nd
	109	# Quantity : true if integrated quantity over a grid box, false for flux (quantity / m^2)
	110	# or intensive value (temperature, salinity, sea-ice fraction, ...)
	111	# Renormalize : used when source grid is masked, to use values on non masked points only
[4172]	112	# oceGrid : t, u or v point for NEMO C grid
[4159]	113	# atmGrid : up to know, only t grid used in the atmosphere
	114	# useArea : if true area from the model metrics is used. If false, areas are computed by XIOS from grid corners
	115	# maskSrc : true to use the source grid mask, false to used all grid points
	116	# maskDst : true to use the destination grid mask, false to use all grid points
	117	#
[4259]	118	## Classic cases for IPSLCM6
	119	AtmOceFluxes=" Direction=a2o,Order=1st,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=HeatWaterFluxes" # Heat and water fluxes
	120	AtmOceFluxes2nd="Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=HeatWaterFluxes" # Heat and water fluxes
	121	OceAtmTemp=" Direction=o2a,Order=1st,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=TempIceAlb" # Temperature, sea-ice fraction, albedo
	122	OceAtmTemp2nd=" Direction=o2a,Order=2nd,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=TempIceAlb" # Temperature, sea-ice fraction, albedo
	123	AtmOceStressU=" Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=u,useArea=true,maskSrc=true,maskDst=true,Name=WindStress" # Wind stress to NEMO U point
	124	AtmOceStressV=" Direction=a2o,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=v,useArea=true,maskSrc=true,maskDst=true,Name=WindStress" # Wind stress to NEMO V point
	125	AtmOceQuantity=" Direction=a2o,Order=1st,Quantity=true,Renormalize=false,atmGrid=t,oceGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=Quantity" # e.g. runoff
[4172]	126	# Other cases
[4259]	127	OceAtmFluxes=" Direction=o2a,Order=1st,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=OceAtmFluxes" # e.g. CO2 fluxes
	128	OceAtmFluxes2nd="Direction=o2a,Order=2nd,Quantity=false,Renormalize=false,atmGrid=t,oceGrid=t,useArea=true,maskSrc=true,maskDst=true,Name=OceAtmFluxes" # e.g. CO2 fluxes
	129	AtmOceTemp=" Direction=o2a,Order=1st,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=OceTemp" # e.g. T and S correction from DWL parametrization
	130	AtmOceTemps2nd=" Direction=o2a,Order=2nd,Quantity=false,Renormalize=true,oceGrid=t,atmGrid=t,useArea=false,maskSrc=true,maskDst=true,Name=OceTemp" # e.g. T and S correction from DWL parametrization
[4159]	131
[4259]	132	## Creates the list
	133
[4186]	134	# Standard list for IPSLCM6
	135	#CommandList=( ${AtmOceFluxes} ${OceAtmTemp} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} Runoff Calving Grids )
[4172]	136
[4259]	137	# More comprehensive list for IPSLCM6 with new features
	138	#CommandList=( ${AtmOceFluxes} ${OceAtmTemp} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} ${AtmOceTemp} Runoff Calving Grids )
[4172]	139
[4259]	140	# With 2nd order
	141	CommandList=( ${AtmOceFluxes} ${AtmOceFluxes2nd} ${OceAtmTemp} ${OceAtmTemp2nd} ${AtmOceStressU} ${AtmOceStressV} ${OceAtmFluxes} ${OceAtmFluxes2nd} ${AtmOceTemp} ${AtmOceTemp2nd} Runoff Calving Grids )
	142
[4186]	143	# Debugs
	144	#CommandList=( ${AtmOceFluxes} ${OceAtmTemp} Runoff Calving Grids )
[4199]	145	#CommandList=( ${AtmOceFluxes} Runoff Calving Grids )
[4259]	146	#CommandList=( ${AtmOceFluxes} )
	147	#CommandList=( Runoff )
	148	#CommandList=( Runoff Calving Grids )
[4186]	149	#CommandList=( Calving )
	150	#CommandList=( Grids )
[4172]	151
[3620]	152	## ===========================================================================
	153	##
	154	## You should not change anything below this line ....
	155	##
	156	## ===========================================================================
[4199]	157	Tag="MOSAIX"
[3620]	158	SUBMIT_DIR=$(pwd)
[4259]	159	FMT_XIOS=netcdf4
[4159]	160
	161	# Functions to handle command parameters
	162	# ======================================
[4153]	163	function read_Command {
	164	# Decipher the command line to set bash variables
	165	local l_Debug="no" l_Element
	166	while [[ ${1} = -* ]] ; do
	167	case ${1} in
	168	( -- ) shift ; break ;;
	169	( -d \| --debug ) l_Debug="true" ; shift ;;
	170	esac
	171	done
	172	local l_Command=${1}
[4159]	173	for l_Element in $(echo ${l_Command} \| tr "," "\n" ) ; do
[4153]	174	[[ "X${l_Debug}" = "Xtrue" ]] && echo ${l_Element}
	175	eval export ${l_Element}
	176	done
	177	}
[3620]	178
[4153]	179	function setValues {
	180	#
[4186]	181	read_Command "Direction=None,Order=None,Quantity=None,Renormalize=None,atmGrid=None,oceGrid=None,useArea=None,maskSrc=None,maskDst=None"
	182	read_Command ${1}
	183	#
[4159]	184	oceGrid=${oceGrid,,} ; atmGrid=${atmGrid,,}
	185	OCEGRID=${oceGrid^^} ; ATMGRID=${atmGrid^^}
[4153]	186
	187	case ${Order} in
	188	( 1st ) numOrder=1 ;;
	189	( 2nd ) numOrder=2 ;;
	190	esac
	191	case ${Renormalize} in
	192	( true ) NormName=Normalized ;;
	193	( false ) NormName=UnNormalized ;;
	194	esac
	195	case ${Quantity} in
	196	( true ) QuantName=Integrated ;;
	197	( false ) QuantName=Surfacic ;;
	198	esac
	199	case ${useArea} in
	200	( true ) AreaName=Area ;;
	201	( false ) AreaName=NoArea ;;
	202	esac
	203
[4186]	204	if [[ "${Name}" != "None" ]] ; then
[4259]	205	FullName=${Name}_${Order}Order
[4186]	206	else
[4199]	207	FullName=${Order}Order_${NormName}_${QuantName}_${AreaName}
[4186]	208	fi
	209
[4153]	210	case ${Direction} in
	211	( o2a )
[4159]	212	src=${oce} ; SRC=${OCE} ; srcGrid=${oceGrid} ; srcDomainType=${oceDomainType} ; SRCGRID=${OCEGRID} ; srcArea=area_grid_${OCEGRID}
	213	dst=${atm} ; DST=${ATM} ; dstGrid=${atmGrid} ; dstDomainType=${atmDomainType} ; DSTGRID=${ATMGRID} ; dstArea=aire
[4153]	214	;;
	215	( a2o )
[4159]	216	src=${atm} ; SRC=${ATM} ; srcGrid=${atmGrid} ; srcDomainType=${atmDomainType} ; SRCGRID=${ATMGRID} ; srcArea=aire
	217	dst=${oce} ; DST=${OCE} ; dstGrid=${oceGrid} ; dstDomainType=${oceDomainType} ; DSTGRID=${OCEGRID} ; dstArea=area_grid_${OCEGRID}
[4153]	218	;;
	219	esac
[4186]	220	echo ${Green}"${SRC} ${SRCGRID} toward ${DST} ${DSTGRID} - ${Order} Order - Normalize: ${Renormalize} - Quantity: ${QuantName} - Area: ${AreaName} "${Norm}
[4199]	221	echo ${Green}"FullName : ${FullName}"${Norm}
[4153]	222	}
[4186]	223
[3620]	224	#
	225	# Defines computer
	226	# ================
[3901]	227	if [[ $(hostname) = irene* ]] ; then arch=irene ; center=tgcc ; fi
[4153]	228	if [[ $(hostname) = lsce* ]] ; then arch=spip ; center=spip ; fi
[3734]	229
[3620]	230	PROGRAM=$(basename ${0})
	231
	232	case ${arch} in
[4153]	233	( irene )
[3620]	234	set +vx
[4259]	235	set +e
[3966]	236	R_IN=$(ccc_home -u igcmg --cccwork)/IGCM
	237	TMPDIR=${CCCWORKDIR}/TMP
	238	SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR}}
	239	PROGRAM=${BRIDGE_MSUB_REQNAME}
[4172]	240	MpiRun="time ccc_mprun"
[4195]	241	PyRun="time ccc_mprun -n 1" # Needed to force python to run on one process only
[4259]	242	#module purge
	243	source $(ccc_home -u igcmg)/MachineEnvironment/irene/env_irene
[4153]	244	source ${SUBMIT_DIR}/arch.env
[4259]	245	#module load nco
[4172]	246	module load python3
[4153]	247	module load datadir/igcmg
[3966]	248	module list
[4259]	249	set -e
[3966]	250	;;
[3734]	251	( spip )
	252	R_IN=${HOME}/Scratch/IGCM
	253	TMPDIR=${HOME}/Scratch/TMP
	254	SUBMIT_DIR=$(pwd)
[4172]	255	MpiRun="/opt/local/bin/mpirun -n 4"
	256	PyRun="time"
[3734]	257	;;
[3901]	258	( * ) exit -1 ;;
[3620]	259	esac
	260
	261	set -x ; set -e
	262
[4195]	263	mkdir -p ${TMPDIR}/${CplModel} \|\| exit 1
	264	cd ${TMPDIR}/${CplModel} \|\| exit 1
[4146]	265	rm -fr *
[3620]	266
	267	#
	268	# Suffixes
	269	# ---------------------------------------------------------------------------
	270
	271	case ${OCE} in
[4153]	272	( ORC ) oce=orc ; oceDomainType=curvilinear ;;
[3620]	273	esac
[4159]	274
[3620]	275	case ${ATM} in
[4153]	276	( dynamico ) atm=ico ; atmDomainType=unstructured ;;
	277	( ICO ) atm=ico ; atmDomainType=unstructured ;;
	278	( lmd \| LMD ) atm=lmd ; atmDomainType=rectilinear ;;
[3620]	279	esac
	280
[4159]	281	case ${OCE} in # Periodicity type of ORCA grid
	282	( ORCA2.3* ) OcePerio=4 ;;
[4172]	283	( ORCA1* \| eORCA1* ) OcePerio=6 ;;
[4159]	284	( ORCA025* \| eORCA025 ) OcePerio=6 ;;
[3723]	285	esac
[3620]	286	#
	287
[4195]	288	cp ${SUBMIT_DIR}/bin/interpol.exe .
	289	cp ${SUBMIT_DIR}/*.py .
[4153]	290	cp ${SUBMIT_DIR}/iodef_atm_to_oce.xml .
	291	cp ${SUBMIT_DIR}/iodef_oce_to_atm.xml .
[3620]	292
	293	cp ${R_IN}/OCE/NEMO/${OCE}/${OCE}_coordinates_mask.nc .
[3639]	294	cp ${R_IN}/ATM/GRID/${ATM}_grid.nc .
[3620]	295
[3901]	296	#
[4186]	297	# echo ${Titre}"Creates OCEAN C grid : redundant points removed to compute proper integrals # A passer dans CreateWeights"${Norm}
	298	# # --------------------------------------------------------------------------------------------------------
	299	# cat <<EOF >add_c_grid.nco
	300	# defdim("x_grid_C", \$x_grid_T.size) ;
	301	# defdim("y_grid_C", \$y_grid_T.size) ;
	302	# defdim("nvertex_grid_C", 4) ;
	303	# nav_lon_grid_C[y_grid_C,x_grid_C] = nav_lon_grid_T(:,:) ;
	304	# nav_lat_grid_C[y_grid_C,x_grid_C] = nav_lat_grid_T(:,:) ;
	305	# bounds_lon_grid_C[y_grid_C,x_grid_C,nvertex_grid_C] = bounds_lon_grid_T(:,:,:) ;
	306	# bounds_lat_grid_C[y_grid_C,x_grid_C,nvertex_grid_C] = bounds_lat_grid_T(:,:,:) ;
	307	# mask_C[y_grid_C,x_grid_C] = maskutil_T(:,:) ;
	308	# area_grid_C[y_grid_C,x_grid_C] = area_grid_T(:,:) ;
	309	# EOF
[3620]	310
[4186]	311	# ncap2 --overwrite --history --script-file add_c_grid.nco ${OCE}_coordinates_mask.nc tmp_${OCE}_coordinates_mask.nc
	312	# ncatted --history --attribute bounds,nav_lon_grid_C,m,c,"bounds_lon_grid_C" tmp_${OCE}_coordinates_mask.nc
	313	# ncatted --history --attribute bounds,nav_lat_grid_C,m,c,"bounds_lat_grid_C" tmp_${OCE}_coordinates_mask.nc
	314	# ncks --history --overwrite --variable nav_lon_grid_C,nav_lat_grid_C tmp_${OCE}_coordinates_mask.nc C_${OCE}_coordinates_mask.nc
	315	# ncks --history --append --variable bounds_lon_grid_C,bounds_lat_grid_C tmp_${OCE}_coordinates_mask.nc C_${OCE}_coordinates_mask.nc
	316	# ncks --history --append --variable area_grid_C tmp_${OCE}_coordinates_mask.nc C_${OCE}_coordinates_mask.nc
[3912]	317
[4186]	318	# ncks --history --append C_${OCE}_coordinates_mask.nc ${OCE}_coordinates_mask.nc
	319	# rm C_${OCE}_coordinates_mask.nc
[3901]	320
[4186]	321	# ls -al
[3901]	322
	323	##
[4172]	324	echo ${Titre}"NEMO T point towards ATM - 1st order"${Norm}
[3901]	325	## ===========================================================================
[4153]	326	echo "Command parameters : ${Command}"
[4186]	327	setValues ${DefaultValues}
[3620]	328
[4153]	329	cp iodef_oce_to_atm.xml iodef.xml
	330
[4172]	331	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v maskutil_T
	332	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="area_src"]' -k name -v area_grid_T
	333	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType}
	334	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType}
	335	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1
	336	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v false
	337	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v false
	338	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v false
	339	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v maskutil_T
	340	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v area_grid_T
[4199]	341	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]' -k name -v dia_${srcGrid}${src}_to_${dstGrid}${dst}_${FullName}
[4172]	342	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]' -t "${SRC} mask interpolated to ${DST}"
	343	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${srcDomainType}
	344	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]' -t ${dstDomainType}
	345	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]' -t 1
	346	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType}
	347	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType}
[4199]	348	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_${srcGrid}${src}_to_${dstGrid}${dst}_${FullName}.nc
[4172]	349	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1
	350	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t false
	351	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]' -t false
	352	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="use_area"]' -t false
	353	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v false
	354	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v false
	355	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v false
[3620]	356
[4199]	357	cp iodef.xml iodef_${srcGrid}${src}_to_${dstGrid}${dst}_${FullName}.xml
[3901]	358	ln -fs ${OCE}_coordinates_mask.nc oce_grid.nc
	359	ln -fs ${ATM}_grid.nc atm_grid.nc
[3620]	360
[4172]	361	${MpiRun} ./interpol.exe --mask_src=${maskSrc} --mask_dst=${maskDst} --use_area=${useArea}
	362
[3620]	363	##
[4172]	364	echo ${Titre}"Correct spurious values (extremes)"${Norm}
[3620]	365	## ===========================================================================
	366	cat <<EOF > correction_masque.nco
	367	where (OceFrac < 0.00001 ) OceFrac=OceFrac.get_miss() ;
	368	where (OceFrac > 0.99999 ) OceFrac=1.0 ;
	369	OceFrac.delete_miss() ;
	370	// Fill masked values to land values
	371	where (OceFrac > 1.0 ) OceFrac=0.0 ;
	372	where (OceFrac < 0.0 ) OceFrac=0.0 ;
	373	EOF
[4199]	374	ncap2 --history --overwrite --script-file correction_masque.nco dia_t${oce}_to_t${atm}_${FullName}.nc tmp_dia_t${oce}_to_t${atm}_${FullName}.nc ; mv tmp_dia_t${oce}_to_t${atm}_${FullName}.nc dia_t${oce}_to_t${atm}_${FullName}.nc
	375	ncatted --history -a missing_value,OceFrac,d,,"" -a _FillValue,OceFrac,d,,"" dia_t${oce}_to_t${atm}_${FullName}.nc
[3620]	376
	377	##
[4172]	378	echo ${Titre}"Creates ocean fractions on ATM grid"${Norm}
[3620]	379	## ===========================================================================
[4199]	380	cp dia_t${oce}_to_t${atm}_${FullName}.nc dia_t${oce}_to_t${atm}_${FullName}_mask.nc
	381	ncks --alphabetize --history --overwrite --variable OceFrac dia_t${oce}_to_t${atm}_${FullName}_mask.nc ${ATM}_grid_maskFrom_${OCE}.nc
[3620]	382
	383	cat <<EOF > creation_masque.nco
	384	where (OceFrac > 0.0 ) OceFrac=1 ;
	385	where (OceFrac <= 0.0 ) OceFrac=0 ;
	386	EOF
[4081]	387
[4199]	388	ncap2 --history --overwrite --script-file creation_masque.nco dia_t${oce}_to_t${atm}_${FullName}_mask.nc tmp_dia_t${oce}_to_t${atm}_${FullName}_mask.nc ; mv tmp_dia_t${oce}_to_t${atm}_${FullName}_mask.nc dia_t${oce}_to_t${atm}_${FullName}_mask.nc
	389	ncrename --history --variable OceFrac,OceMask dia_t${oce}_to_t${atm}_${FullName}_mask.nc
[3620]	390
[4199]	391	ncks --overwrite --history --variable OceMask dia_t${oce}_to_t${atm}_${FullName}_mask.nc tmp_OceMask.nc
[4081]	392	ncks --history --append tmp_OceMask.nc ${ATM}_grid_maskFrom_${OCE}.nc
[4199]	393	rm dia_t${oce}_to_t${atm}_${FullName}_mask.nc
[3620]	394
[4172]	395	echo "Change dimension names, and some attributes accordingly"
[4081]	396	if [[ $(ncdump -h ${ATM}_grid_maskFrom_${OCE}.nc \| grep domain_dst \| wc -l) -gt 0 ]] ; then
	397	case ${atm} in
	398	( ico )
[4088]	399	ncrename --history --dimension cell_domain_dst,cell ${ATM}_grid_maskFrom_${OCE}.nc
	400	ncrename --history --dimension nvertex_domain_dst,nvertex ${ATM}_grid_maskFrom_${OCE}.nc
	401	ncrename --history --variable lat_domain_dst,lat ${ATM}_grid_maskFrom_${OCE}.nc
	402	ncrename --history --variable lon_domain_dst,lon ${ATM}_grid_maskFrom_${OCE}.nc
	403	ncrename --history --variable bounds_lat_domain_dst,bounds_lat ${ATM}_grid_maskFrom_${OCE}.nc
	404	ncrename --history --variable bounds_lon_domain_dst,bounds_lon ${ATM}_grid_maskFrom_${OCE}.nc
	405	ncatted --history --attribute bounds,lat,m,c,"bounds_lat" ${ATM}_grid_maskFrom_${OCE}.nc
	406	ncatted --history --attribute bounds,lon,m,c,"bounds_lon" ${ATM}_grid_maskFrom_${OCE}.nc
[4081]	407	;;
	408	( lmd )
[4088]	409	ncrename --history --dimension lon_domain_dst,lon ${ATM}_grid_maskFrom_${OCE}.nc
	410	ncrename --history --dimension lat_domain_dst,lat ${ATM}_grid_maskFrom_${OCE}.nc
[4081]	411	;;
	412	esac
	413	ncatted --history --attribute coordinates,OceFrac,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc
	414	ncatted --history --attribute coordinates,OceMask,m,c,"lat lon" ${ATM}_grid_maskFrom_${OCE}.nc
[4088]	415
[4081]	416	fi
	417
	418	ncks --history --alphabetize --append --variable aire atm_grid.nc ${ATM}_grid_maskFrom_${OCE}.nc
	419	[[ ${atm} = ico ]] && ncks --alphabetize --history --append --variable bounds_lon,bounds_lat atm_grid.nc ${ATM}_grid_maskFrom_${OCE}.nc
	420
[3620]	421	##
[4199]	422	#echo ${Titre}"Creates mask of coastal OCE points"${Norm}
[3901]	423	## ===========================================================================
[4199]	424	#${PyRun} python3 -u ComputeNemoCoast.py -n ${OcePerio} -i ${OCE}_coordinates_mask.nc # Creates OceCoastal
[4172]	425
[3901]	426	##
[4199]	427	#echo ${Titre}"Creates mask of coastal ATM points"${Norm}
[3901]	428	## ===========================================================================
[4199]	429	#cat <<EOF > coastal.nco
	430	#AtmCoastal = OceFrac * 0.0 ;
	431	#where (OceFrac > 0.0 && OceFrac < 1.0 ) AtmCoastal = 1.0 ;
	432	#EOF
	433	#ncap2 --history --overwrite --script-file coastal.nco ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_coastal_maskFrom_${OCE}.nc
	434	#ncks --history --append --variable AtmCoastal ${ATM}_coastal_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
	435	#rm ${ATM}_coastal_maskFrom_${OCE}.nc
[4081]	436
[3901]	437	##
[4172]	438	echo ${Titre}"Other weights files"${Norm}
[3718]	439	## ===========================================================================
[4153]	440	# Loop on commands
	441	for Command in ${CommandList[@]}
	442	do
	443	echo "Command parameters : ${Command}"
[4186]	444	setValues ${Command}
[4172]	445	if [[ ${Command} = "Runoff" ]] ; then okRunoff=yes ; continue ; fi
	446	if [[ ${Command} = "Calving" ]] ; then okCalving=yes ; continue ; fi
[4186]	447	if [[ ${Command} = "Grids" ]] ; then okGrids=yes ; continue ; fi
[4172]	448
[4153]	449	ln -fs ${OCE}_coordinates_mask.nc oce_grid.nc
	450	ln -fs ${ATM}_grid.nc atm_grid.nc
	451
	452	case ${Direction} in
	453	( o2a )
	454	cp iodef_oce_to_atm.xml iodef.xml
[4082]	455
[4172]	456	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v mask_${DSTGRID}
	457	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]' -k name -v OceMask
[4082]	458
[4172]	459	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v maskutil_${SRCGRID}
	460	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v area_grid_${SRCGRID}
	461	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="mask_dest"]' -k name -v OceMask
	462	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="area_dest"]' -k name -v aire
[4153]	463	;;
	464	( a2o )
	465	cp iodef_atm_to_oce.xml iodef.xml
[4082]	466
[4172]	467	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]' -k name -v OceMask
	468	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]' -k name -v mask_${DSTGRID}
[4082]	469
[4172]	470	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name -v OceMask
	471	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="area_source"]' -k name -v aire
	472	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="mask_dest"]' -k name -v mask_${DSTGRID}
	473	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="area_dest"]' -k name -v area_grid_${DSTGRID}
[4153]	474	;;
	475	esac
	476
[4172]	477	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType}
	478	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType}
[4153]	479
[4172]	480	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]' -k type -v ${srcDomainType}
	481	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]' -k type -v ${dstDomainType}
[4153]	482
[4199]	483	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_${srcGrid}${src}_to_${dstGrid}${dst}_${FullName}.nc
[4172]	484	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v ${numOrder}
	485	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k quantity -v ${Quantity}
	486	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k renormalize -v ${Renormalize}
	487	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k use_area -v ${useArea}
[4153]	488
[4199]	489	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]' -k name -v dia_${srcGrid}${src}_to_${dstGrid}${dst}_${FullName}
[4172]	490	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]' -t "${SRC} mask interpolated to ${DST}"
	491	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]' -t ${dstDomainType}
	492	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${srcDomainType}
	493	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="normalization"]' -t ${Renormalize}
	494	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]' -t ${numOrder}
	495	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="quantity"]' -t ${Quantity}
	496	python3 update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="use_area"]' -t ${useArea}
[4153]	497
[4199]	498	cp iodef.xml iodef_${srcGrid}${src}_to_${dstGrid}${dst}_${FullName}.xml
[4172]	499	${MpiRun} ./interpol.exe --mask_src=${maskSrc} --mask_dst=${maskDst} --use_area=${useArea}
[3719]	500	done
[4153]	501
[3620]	502	##
[4172]	503	echo ${Titre}"Add some metadata in file headers"${Norm}
[3620]	504	## ===========================================================================
	505
	506	UUID=$(uuid)
	507	NCO="$(ncks --version \|& tail -1\|sed 's/ncks //')"
[4172]	508	PYTHON_VER=$( python3 -c "import sys ; print (sys.version.split(' ')[0])" )
[4199]	509	for InFile in $(ls ${oce}_to_${atm}_.nc ${atm}_to_${oce}_.nc ${ATM}_grid_maskFrom_${OCE}.nc 2> /dev/null) ; do
[3639]	510	ncatted --history \
[3620]	511	--attribute uuid,global,d,, \
	512	--attribute LongName,global,d,, \
	513	--attribute nco_openmp_thread_number,global,d,, \
	514	--attribute Conventions,global,o,c,"CF-1.6" \
	515	--attribute source,global,o,c,"IPSL Earth system model" \
	516	--attribute group,global,o,c,"ICMC IPSL Climate Modelling Center" \
	517	--attribute Institution,global,o,c,"IPSL https://www.ipsl.fr" \
	518	--attribute Ocean,global,o,c,"${OCE} https://www.nemo-ocean.eu" \
	519	--attribute Atmosphere,global,o,c,"${ATM} http://lmdz.lmd.jussieu.fr" \
	520	--attribute production,global,o,c,"$(finger ${LOGNAME} \| head -1 \| awk '{print $4, $5}') " \
	521	--attribute originalFiles,global,o,c,"${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc" \
[4195]	522	--attribute associatedFiles,global,o,c,"grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc" \
[3620]	523	--attribute directory,global,o,c,"$(pwd)" \
	524	--attribute description,global,o,c,"Fields needed by OASIS-MCT" \
	525	--attribute title,global,o,c,"${InFile}.nc" \
	526	--attribute Program,global,o,c,"Generated by ${PROGRAM}" \
	527	--attribute timeStamp,global,o,c,"$(date)" \
	528	--attribute uuid,global,o,c,"${UUID}" \
	529	--attribute HOSTNAME,global,o,c,"$(hostname)" \
	530	--attribute LOGNAME,global,o,c,"$(whoami)" \
	531	--attribute NCO,global,o,c,"NCO netCDF Operator ${NCO} http://nco.sourceforge.net" \
[4172]	532	--attribute Python,global,o,c,"Python3 version ${PYTHON_VER}" \
[3620]	533	--attribute OS,global,o,c,"$(uname -o)" \
	534	--attribute release,global,o,c,"$(uname -r)" \
	535	--attribute directory,global,o,c,"$(pwd)" \
[3624]	536	--attribute description,global,o,c,"Generated with XIOS http://forge.ipsl.jussieu.fr/ioserver and MOSAIX https://forge.ipsl.jussieu.fr/igcmg/browser/TOOLS/MOSAIX" \
[4090]	537	--attribute SVN_Author,global,o,c,'$Author$' \
	538	--attribute SVN_Date,global,o,c,'$Date$' \
	539	--attribute SVN_Revision,global,o,c,'$Revision$' \
	540	--attribute SVN_Id,global,o,c,'$Id$' \
[3620]	541	${InFile}
	542	done
	543	##
[4172]	544	echo ${Titre}"Update and complete weight files to fit OASIS requested format"${Norm}
[3620]	545	## ===========================================================================
	546	cat <<EOF > add_dim.nco
	547	defdim("num_wgts",1) ;
	548	weight[n_weight, num_wgts] = weight ;
	549	EOF
	550
[3719]	551	for rmpFile in rmp_*.nc ; do
[4199]	552	mv ${rmpFile} tmp_${rmpFile}
	553	ncap2 --history --script-file add_dim.nco tmp_${rmpFile} ${rmpFile} ; rm tmp_${rmpFile}
[3620]	554
[3719]	555	ncrename --history --dimension n_weight,num_links ${rmpFile}
	556	ncrename --history --variable src_idx,src_address ${rmpFile}
	557	ncrename --history --variable dst_idx,dst_address ${rmpFile}
	558	ncrename --history --variable weight,remap_matrix ${rmpFile}
	559	case ${rmpFile} in
[4082]	560	( 1storder ) ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order" ${rmpFile} ;;
	561	( 2ndorder ) ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 2nd order" ${rmpFile} ;;
[3620]	562	esac
[3719]	563	case ${rmpFile} in
[4082]	564	( _Normalized ) ncatted --history --attribute map_method,global,o,c,"Normalization: true" ${rmpFile} ;;
	565	( _UnNormalized ) ncatted --history --attribute map_method,global,o,c,"Normalization: false" ${rmpFile} ;;
[3719]	566	esac
[4082]	567	case ${rmpFile} in
	568	( Integrated ) ncatted --history --attribute map_method,global,o,c,"Quantity: true" ${rmpFile} ;;
	569	( Surfacic ) ncatted --history --attribute map_method,global,o,c,"Quantity: false" ${rmpFile} ;;
	570	esac
[3719]	571	ncatted --history --attribute conventions,global,o,c,"SCRIP" ${rmpFile}
	572	ncatted --history --attribute normalization,global,o,c,"none" ${rmpFile}
[3620]	573
[3719]	574	case ${rmpFile} in
[3620]	575	( rmp_${oce}_to_t${atm}_ )
[3639]	576	ncatted --history \
[3620]	577	--attribute title,global,o,c,"Weights ${OCE} to ${ATM}" \
[4153]	578	--attribute source_grid,global,o,c,"${oceDomainType}" \
	579	--attribute dest_grid,global,o,c,"${atmDomainType}" \
[3719]	580	${rmpFile}
[3620]	581	;;
	582	( rmp_${atm}_to_${oce}_* )
[3639]	583	ncatted --history \
[3620]	584	--attribute title,global,o,c,"Weights ${ATM} to ${OCE}" \
[4153]	585	--attribute source_grid,global,o,c,"${atmDomainType}" \
	586	--attribute dest_grid,global,o,c,"${oceDomainType}" \
[3719]	587	${rmpFile}
[3620]	588	;;
	589	esac
	590	done
	591
[4186]	592	ls
[3620]	593	##
[4172]	594	echo ${Titre}"Add missing variables in rmp files"${Norm}
[3639]	595	## ===========================================================================
[4259]	596	for rmpFile in $(ls rmp_?${atm}_to_[tuv]${oce}_.nc rmp_[tuv]${oce}_to_t${atm}_.nc 2> /dev/null ) ; do
[3901]	597	echo ${rmpFile}
[3719]	598	a_to_o=false ; o_to_a=false
	599	case ${rmpFile} in
	600	( rmp_?${oce}_to_?${atm}_*.nc ) o_to_a=true ;;
	601	( rmp_?${atm}_to_?${oce}_*.nc ) a_to_o=true ;;
	602	esac
	603
[3901]	604	for Grid in t u v o c ; do # Identify grids
	605	[[ ${rmpFile} = rmp_${Grid}${oce}_to_?${atm}_*.nc ]] && ogrid=${Grid}
	606	[[ ${rmpFile} = rmp_?${oce}_to_${Grid}${atm}_*.nc ]] && agrid=${Grid}
	607	[[ ${rmpFile} = rmp_${Grid}${atm}_to_?${oce}_*.nc ]] && agrid=${Grid}
	608	[[ ${rmpFile} = rmp_?${atm}_to_${Grid}${oce}_*.nc ]] && ogrid=${Grid}
[3719]	609	done
	610	OGRID=${ogrid^}
	611	AGRID=${agrid^}
[3639]	612
[3719]	613	cat <<EOF >add_varoce.nco
[3639]	614	defdim ("src_grid_size" , \$x_grid_${OGRID}.size*\$y_grid_${OGRID}.size) ;
	615	defdim ("src_grid_corners", 4) ;
	616	defdim ("src_grid_rank" , 2) ;
	617	//
	618	src_grid_dims[src_grid_rank] = { \$y_grid_${OGRID}.size, \$x_grid_${OGRID}.size } ;
	619	//
	620	src_grid_center_lat [src_grid_size] = 0.0d ;
	621	src_grid_center_lon [src_grid_size] = 0.0d ;
	622	src_grid_center_lat (:) = nav_lat_grid_${OGRID}(:,:) ;
	623	src_grid_center_lon (:) = nav_lon_grid_${OGRID}(:,:) ;
	624	//
	625	src_grid_corner_lat [src_grid_size, src_grid_corners] = 0.0d ;
	626	src_grid_corner_lon [src_grid_size, src_grid_corners] = 0.0d ;
	627	src_grid_corner_lat(:,:) = bounds_lat_grid_${OGRID}(:,:,:) ;
	628	src_grid_corner_lon(:,:) = bounds_lon_grid_${OGRID}(:,:,:) ;
	629	//
	630	src_grid_imask [src_grid_size] = 0 ;
	631	src_grid_area [src_grid_size] = 0.0d ;
	632	src_grid_frac [src_grid_size] = 1.0d ;
	633	src_grid_imask (:) = 1 - mask_${OGRID}(:,:) ;
	634	src_grid_imask.int() ;
	635	src_grid_area (:) = area_grid_${OGRID}(:,:) ;
	636	EOF
	637
[4146]	638	cp add_varoce.nco add_varoce_$(basename ${rmpFile} .nc)_o_to_a.nco
[4199]	639	[[ ${o_to_a} = true ]] && ncap2 --history --append --script-file add_varoce_$(basename ${rmpFile} .nc)_o_to_a.nco ${OCE}_coordinates_mask.nc ${rmpFile}
[3719]	640	sed --in-place "s/src_/dst_/g" add_varoce.nco
[4146]	641	cp add_varoce.nco add_varoce_$(basename ${rmpFile} .nc)_a_to_o.nco
[4199]	642	[[ ${a_to_o} = true ]] && ncap2 --history --append --script-file add_varoce_$(basename ${rmpFile} .nc)_a_to_o.nco ${OCE}_coordinates_mask.nc ${rmpFile}
[3719]	643
	644	if [[ ${atm} = ico ]] ; then
	645	cat <<EOF >add_varatm.nco
[3639]	646	defdim ("dst_grid_size" , \$cell.size) ;
	647	defdim ("dst_grid_corners", 6) ;
	648	defdim ("dst_grid_rank" , 2) ;
	649	//
	650	dst_grid_dims[dst_grid_rank] = { \$cell.size, 1 } ;
	651	//
	652	dst_grid_center_lat [dst_grid_size] = 0.0d ;
	653	dst_grid_center_lon [dst_grid_size] = 0.0d ;
	654	dst_grid_center_lat (:) = lat(:) ;
	655	dst_grid_center_lon (:) = lon(:) ;
	656	//
	657	dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ;
	658	dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ;
	659	dst_grid_corner_lat(:,:) = bounds_lat(:,:) ;
	660	dst_grid_corner_lon(:,:) = bounds_lon(:,:) ;
	661	//
	662	dst_grid_imask [dst_grid_size] = 0 ;
	663	dst_grid_area [dst_grid_size] = 0.0d ;
	664	dst_grid_frac [dst_grid_size] = 1.0d ;
[4259]	665	dst_grid_imask (:) = 1 - OceMask(:) ;
[3639]	666	dst_grid_imask.int() ;
	667	dst_grid_area (:) = aire(:) ;
[4259]	668	dst_grid_frac (:) = OceFrac(:) ;
[3639]	669	EOF
[4146]	670	cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco
[3719]	671	if [[ ${o_to_a} = true ]] ; then
[4199]	672	ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco ${ATM}_grid_maskFrom_${OCE}.nc ${rmpFile}
[3719]	673	ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
	674	mv rmp_tmp.nc ${rmpFile}
	675	fi
[3718]	676
[3719]	677	sed --in-place "s/dst_/src_/g" add_varatm.nco
[4146]	678	cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco
[3719]	679	if [[ ${a_to_o} = true ]] ; then
[4199]	680	ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco ${ATM}_grid_maskFrom_${OCE}.nc ${rmpFile}
[3719]	681	ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
	682	mv rmp_tmp.nc ${rmpFile}
	683	fi
	684	fi
[3966]	685
[3719]	686	if [[ ${atm} = lmd ]] ; then
	687	cat <<EOF >add_varatm.nco
[3639]	688	defdim ("dst_grid_size" , \$lon.size*\$lat.size) ;
	689	defdim ("dst_grid_corners", 4) ;
	690	defdim ("dst_grid_rank" , 2) ;
	691	//
	692	dst_grid_dims[dst_grid_rank] = { \$lat.size, \$lon.size } ;
	693	//
	694	dst_grid_center_lat [dst_grid_size] = 0.0d ;
	695	dst_grid_center_lon [dst_grid_size] = 0.0d ;
	696	lat0lon[lat,lon] = lat(:)+0*lon(:) ;
	697	lon0lat[lat,lon] = lon(:)+0*lat(:) ;
	698	dst_grid_center_lat (:) = lat0lon(:,:) ;
	699	dst_grid_center_lon (:) = lon0lat(:,:) ;
	700	//
	701	//dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ; // Not available for LMDZ lon/lat grid
	702	//dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ;
	703	//dst_grid_corner_lat(:,:) = bounds_lat(:,:) ;
	704	//dst_grid_corner_lon(:,:) = bounds_lon(:,:) ;
	705	//
	706	dst_grid_imask [dst_grid_size] = 0 ;
	707	dst_grid_area [dst_grid_size] = 0.0d ;
	708	dst_grid_frac [dst_grid_size] = 1.0d ;
[4259]	709	dst_grid_imask (:) = 1 - OceMask(:,:) ;
[3639]	710	dst_grid_imask.int() ;
	711	dst_grid_area (:) = aire(:,:) ;
[4259]	712	dst_grid_frac (:) = OceFrac(:,:) ;
[3639]	713	EOF
[4146]	714	cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco
[3719]	715	if [[ ${o_to_a} = true ]] ; then
[4199]	716	ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_o_to_a.nco ${ATM}_grid_maskFrom_${OCE}.nc ${rmpFile}
[3719]	717	ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
	718	mv rmp_tmp.nc ${rmpFile}
	719	fi
	720
	721	sed --in-place "s/dst/src/g" add_varatm.nco
[4146]	722	cp add_varatm.nco add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco
[3719]	723	if [[ ${a_to_o} = true ]] ; then
[4199]	724	ncap2 --history --append --script-file add_varatm_$(basename ${rmpFile} .nc)_a_to_o.nco ${ATM}_grid_maskFrom_${OCE}.nc ${rmpFile}
[3719]	725	ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${rmpFile} rmp_tmp.nc
	726	mv rmp_tmp.nc ${rmpFile}
	727	fi
	728	fi
[3639]	729	done
[3901]	730	ls -al ${OCE}_coordinates_mask.nc
[4097]	731
[3639]	732	##
[4186]	733	## ============================================================================
[4172]	734	echo ${Titre}"Creates and save auxiliary files for OASIS : grids.nc, areas.nc and masks.nc"${Norm}
[4186]	735	cp ${SUBMIT_DIR}/CreateOasisGrids.bash .
	736	bash CreateOasisGrids.bash --oce ${OCE} --atm ${ATM}
[4097]	737
	738
	739	##
[4172]	740	echo ${Titre}"Runoff weights"${Norm}
[4097]	741	## ===========================================================================
[4186]	742	if [[ "X${okRunoff}" = "Xyes" ]] ; then
[4195]	743	${PyRun} python3 -u RunoffWeights.py --oce=${OCE} --atm=${ATM} \
[4172]	744	--atmCoastWidth=${atmCoastWidth} --oceCoastWidth=${oceCoastWidth} --searchRadius=${searchRadius} \
[4195]	745	--grids=grids_${CplModel}.nc --areas=areas_${CplModel}.nc --masks=masks_${CplModel}.nc \
[4199]	746	--o2a=${ATM}_grid_maskFrom_${OCE}.nc --output=rmp_t${atm}_to_t${oce}_runoff_${runOff_atmQuantity}_to_${runOff_oceQuantity}.nc \
	747	--fmt=${FMT_XIOS} \
[4186]	748	--atmQuantity=${runOff_atmQuantity} --oceQuantity=${runOff_oceQuantity}
[4172]	749	fi
[4097]	750
	751	##
[4172]	752	echo ${Titre}"Calving weights"${Norm}
[3620]	753	## ===========================================================================
[4172]	754	if [[ "X${okCalving}" = "Xyes" ]] ; then
	755	case ${OCE} in
	756	( eORCA025 )
[4186]	757	cp /ccc/work/cont003/gencmip6/deshayej/eORCA_R025_runoff_v1.2.nc .
[4199]	758	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_nosouth.nc --fmt=${FMT_XIOS} \
[4186]	759	--oce=${OCE} --atm=${ATM} --type=nosouth --dir=.
[4199]	760	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceberg.nc --fmt=${FMT_XIOS} \
[4186]	761	--oce=${OCE} --atm=${ATM} --type=iceberg --dir=. --repartition_file=eORCA_R025_runoff_v1.2.nc --repartition_var=Icb_flux
[4199]	762	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceshelf.nc --fmt=${FMT_XIOS} \
[4186]	763	--oce=${OCE} --atm=${ATM} --type=iceshelf --dir=. --repartition_file=eORCA_R025_runoff_v1.2.nc --repartition_var=sornfisf
[4172]	764	;;
	765
	766	( eORCA1.2 )
	767	cp ${R_IN}/OCE/NEMO/ORCA1_LIM3_PISCES/v3.6_stable/runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc .
[4199]	768	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_nosouth.nc --fmt=${FMT_XIOS}\
[4172]	769	--oce=${OCE} --atm=${ATM} --type=nosouth --dir=.
[4199]	770	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceberg.nc --fmt=${FMT_XIOS}\
[4172]	771	--oce=${OCE} --atm=${ATM} --type=iceberg --dir=. --repartition_file=runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc --repartition_var=Icb_flux
[4199]	772	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_iceshelf.nc --fmt=${FMT_XIOS}\
[4172]	773	--oce=${OCE} --atm=${ATM} --type=iceshelf --dir=. --repartition_file=runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc --repartition_var=sornfisf
	774	;;
	775
	776	( * )
[4199]	777	${PyRun} python3 -u CalvingWeights.py --output=rmp_t${atm}_to_t${oce}_calving_full.nc --fmt=${FMT_XIOS} \
[4172]	778	--oce=${OCE} --atm=${ATM} --type=full --dir=.
	779	;;
	780
	781	esac
	782	fi
	783
	784	##
[4199]	785	echo ${Titre}"Simplifies headers, add version and comment"${Norm}
[4172]	786	## ===========================================================================
[4199]	787	for File in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
[4037]	788	ncatted --history --attribute history_of_appended_files,global,d,c,"" ${File}
[4199]	789	ncatted --history --attribute history,global,d,c,"" ${File}
[4172]	790	[[ "X${Comment}" != "X" ]] && ncatted --history --attribute Comment,global,o,c,"${Comment}" ${File}
	791	[[ "X${Version}" != "X" ]] && ncatted --history --attribute Version,global,o,c,"${Version}" ${File}
[4199]	792	[[ "X${Tag}" != "X" ]] && ncatted --history --attribute Version,global,o,c,"${Tag}" ${File}
	793	done
	794
	795	##
	796	echo ${Titre}"Rename rmp and dia files"${Norm}
	797	## ===========================================================================
[4259]	798	for File in $(ls ${oce}${atm}* ${atm}${oce}* 2> /dev/null ); do
[3719]	799	NewFile=$(echo ${File} \| sed -e "s/${atm}/${ATM}/" -e "s/${oce}/${OCE}/" )
[4259]	800	mv ${File} ${NewFile}
[3620]	801	done
	802
[4199]	803	##
	804	echo ${Titre}"Add Tag"${Norm}
	805	## ===========================================================================
	806	if [[ "X${Tag}" != "X" ]] ; then
	807	for File in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
	808	mv ${File} $(basename ${File} .nc)_${Tag}.nc
	809	done
[4186]	810	fi
[4199]	811	##
	812	echo ${Titre}"Add Version"${Norm}
	813	## ===========================================================================
	814	if [[ "X${Version}" != "X" ]] ; then
	815	for File in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
	816	mv ${File} $(basename ${File} .nc)_${Version}.nc
	817	done
	818	fi
	819
	820	## ===========================================================================
	821	echo ${Titre}"Save results"${Norm}
	822	## ===========================================================================
	823	for File in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
	824	cp ${File} ${SUBMIT_DIR}
	825	done
[4172]	826
[4199]	827
[3620]	828	##
[4172]	829	echo ${Titre}"Creates a README.txt file"${Norm}
[4090]	830	## ===========================================================================
	831	[[ -f README.txt ]] && rm README.txt
[3620]	832
[4090]	833	cat <<EOF > README.txt
	834	Files produced by CreateWeightsMask.bash and CreateOasisGrids.bash
	835
	836	rmp_* are weights files
	837	dia_* are diagnostic files not needed for the coupler
[4195]	838	grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc are auxiliary file needed by OASIS-MCT
[4090]	839	All files have the same uuid in the global attributes
	840
	841	Description : Weigths and auxiliary files for coupling ${OCE} and ${ATM} needed by OASIS-MCT
	842	Conventions : CF-1.6
	843	source : IPSL Earth system model
	844	group : ICMC IPSL Climate Modelling Center
	845	Institution : IPSL https://www.ipsl.fr
	846	Ocean : ${OCE} https://www.nemo-ocean.eu
	847	Atmosphere : ${ATM} http://lmdz.lmd.jussieu.fr
	848	production : $(finger ${LOGNAME} \| head -1 \| awk '{print $4, $5}')
	849	originalFiles : ${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc
[4195]	850	associatedFiles : grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc
[4090]	851	directory : $(pwd)
	852	timeStamp : $(date)
	853	uuid : ${UUID}
	854	HOSTNAME : $(hostname)
	855	LOGNAME : $(whoami)
	856	NCO : NCO netCDF Operator ${NCO} http://nco.sourceforge.net
	857	Python version : ${PYTHON_VER}
	858	OS : $(uname -o)
	859	release : $(uname -r)
	860	hardware : $(uname -i)
[4091]	861	EOF
[4090]	862
[4091]	863	echo 'SVN Information : ' >> README.txt
	864	echo '$Author$ ' >> README.txt
	865	echo '$Date$ ' >> README.txt
	866	echo '$Revision$ ' >> README.txt
	867	echo '$Id$ ' >> README.txt
	868	echo '$HeadURL$ ' >> README.txt
[4090]	869
[4172]	870	echo ${Titre}"Compute checksums and add them to README"${Norm}
[4199]	871	# ------------------------------------------------------------
[4091]	872	cat << EOF >> README.txt
[4090]	873	UUID common to all files : ${UUID}
	874
[4159]	875	Files produced, with checksum produced by Unix command shasum (version $(shasum --version)) with default algorithm
[4090]	876
	877	EOF
	878
[4199]	879	for file in $(ls dia_.nc rmp_.nc ${ATM}_grid_maskFrom_${OCE}.nc areas_${OCE}x${ATM}.nc grids_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc 2> /dev/null ) ; do
[4090]	880	echo "$(shasum ${file})" >> README.txt
	881	done
	882
	883	cat <<EOF >> README.txt
	884
	885	================= That's all folk's ! ========================
	886	EOF
	887
[4259]	888	if [[ "X${Version}" != "X" ]] ; then
	889	cp README.txt ${SUBMIT_DIR}/README_${CplModel}_MOSAIX_${Version}.txt
	890	else
	891	cp README.txt ${SUBMIT_DIR}/README_${CplModel}_MOSAIX.txt
	892	fi
[3620]	893	## ===========================================================================
	894	##
[4172]	895	echo ${Titre}" That's all folk's !!! "${Norm}
[3620]	896	##
	897	## ===========================================================================
	898

Note: See TracBrowser for help on using the repository browser.

Download in other formats: