[3620] | 1 | #!/bin/bash |
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| 2 | ### =========================================================================== |
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| 3 | ### |
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| 4 | ### Creates grids.nc, masks.nc and areas.nc for OASIS-MCT |
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| 5 | ### |
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| 6 | ### =========================================================================== |
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| 7 | ## |
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| 8 | ## Warning, to install, configure, run, use any of Olivier Marti's |
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| 9 | ## software or to read the associated documentation you'll need at least |
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| 10 | ## one (1) brain in a reasonably working order. Lack of this implement |
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| 11 | ## will void any warranties (either express or implied). |
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| 12 | ## O. Marti assumes no responsability for errors, omissions, |
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| 13 | ## data loss, or any other consequences caused directly or indirectly by |
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| 14 | ## the usage of his software by incorrectly or partially configured |
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| 15 | ## personal. |
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| 16 | ## |
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[3627] | 17 | ### |
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| 18 | ### Documentation : https://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM6/MOSAIX |
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| 19 | ### |
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[3623] | 20 | ## SVN information |
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[3665] | 21 | # $Author$ |
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| 22 | # $Date$ |
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| 23 | # $Revision$ |
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| 24 | # $Id$ |
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[3633] | 25 | # $HeadURL$ |
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[3620] | 26 | |
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[4172] | 27 | set +vx |
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| 28 | |
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| 29 | echo ${Titre}"Starting CreateOasisGrids.bash"${Norm} |
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| 30 | |
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[3620] | 31 | ## |
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[4172] | 32 | echo ${Titre}"Default configuration (may be overrided by command line parameters)"${Norm} |
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[3620] | 33 | ## =========================================================================== |
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| 34 | OCE=ORCA2.3 |
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| 35 | # OCE=eORCA1.2 |
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| 36 | ATM=ICO30 |
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| 37 | #ATM=ICO40 |
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[4172] | 38 | #ATM=ICO450 |
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| 39 | #ATM=LMD144142 |
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| 40 | #ATM=LMD9695 |
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[3620] | 41 | |
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| 42 | ## =========================================================================== |
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| 43 | ## |
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| 44 | ## You should not change anything below this line .... |
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| 45 | ## |
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| 46 | ## =========================================================================== |
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| 47 | |
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[4172] | 48 | echo ${Titre}"Defines computer"${Norm} |
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[3620] | 49 | # ================ |
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[3901] | 50 | if [[ $(hostname) = curie* ]] ; then arch=curie ; center=tgcc ; fi |
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| 51 | if [[ $(hostname) = irene* ]] ; then arch=irene ; center=tgcc ; fi |
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| 52 | if [[ $(hostname) = lsce3005* ]] ; then arch=spip ; center=spip ; fi |
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| 53 | |
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[3620] | 54 | PROGRAM=$(basename ${0}) |
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| 55 | |
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[4186] | 56 | # case ${arch} in |
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| 57 | # ( curie | irene ) |
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| 58 | # set +vx |
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| 59 | # module unload cdo nco ferret |
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| 60 | # module unload netcdf hdf5 |
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| 61 | # module load python # /2.7.12 |
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| 62 | # module load netcdf/4.3.3.1_hdf5_parallel # Version for XIOS |
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| 63 | # module load nco |
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| 64 | # R_IN=$(ccc_home -u igcmg --cccwork)/IGCM |
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| 65 | # TMPDIR=${SCRATCHDIR}/TMP |
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| 66 | # SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR}} |
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| 67 | # ;; |
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| 68 | # ( spip ) |
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| 69 | # R_IN=${HOME}/Scratch/IGCM |
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| 70 | # TMPDIR=${HOME}/Scratch/TMP |
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| 71 | # SUBMIT_DIR=$(pwd) |
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| 72 | # MPIRUN=/opt/local/bin/mpirun-openmpi-gcc49 -n 2 |
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| 73 | # ;; |
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| 74 | # ( * ) exit -1 ;; |
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| 75 | # esac |
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[3901] | 76 | |
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[3620] | 77 | ## |
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[4172] | 78 | echo ${Titre}"Command line parameters"${Norm} |
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[3620] | 79 | ## =========================================================================== |
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[3686] | 80 | set -e |
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[3620] | 81 | set -o verbose |
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| 82 | set -o xtrace |
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| 83 | |
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| 84 | while [[ ${1} = -* ]] ; do |
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| 85 | case ${1} in |
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| 86 | ( -- ) shift ; break ;; |
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| 87 | ( -o=* | --oce=* ) OCE=${1##*=} ; echo OCE:${OCE} ;; |
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| 88 | ( -o | --oce ) shift ; OCE=${1} ; echo OCE:${OCE} ;; |
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| 89 | ( -a=* | --atm=* ) ATM=${1##*=} ; echo ATM:${ATM} ;; |
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| 90 | ( -a | --atm ) shift ; ATM=${1} ; echo ATM:${ATM} ;; |
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| 91 | ( -v | --verbose ) set -o verbose ;; |
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| 92 | ( -x | --xtrace ) set -o xtrace ;; |
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| 93 | ( -e ) set -e ;; |
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| 94 | ( -V | --noverbose ) set +o verbose ;; |
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| 95 | ( -X | --noxtrace ) set +o xtrace ;; |
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| 96 | ( -E ) set +e ;; |
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| 97 | ( -* ) echo ${Bold}"Unknown option : ${1}"${Norm} ; return 1 ;; |
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| 98 | esac |
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| 99 | shift |
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| 100 | done |
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| 101 | |
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| 102 | ## |
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[4172] | 103 | echo ${Titre}"Short names (grid names in Oasis)"${Norm} |
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[3620] | 104 | ## =========================================================================== |
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| 105 | case ${OCE} in |
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| 106 | ( *ORC*) oce=orc ;; |
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| 107 | esac |
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| 108 | case ${ATM} in |
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| 109 | ( *ICO* ) atm=ico ;; |
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| 110 | ( *dynamico* ) atm=ico ;; |
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| 111 | ( *lmd* | *LMD* ) atm=lmd ;; |
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| 112 | esac |
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| 113 | |
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| 114 | CplModel=${OCE}x${ATM} |
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| 115 | |
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| 116 | ## |
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[4172] | 117 | echo ${Titre}"Get input files"${Norm} |
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[3620] | 118 | ## =========================================================================== |
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| 119 | [[ -f ${OCE}_coordinates_mask.nc ]] || cp ${R_IN}/OCE/NEMO/${OCE}/${OCE}_coordinates_mask.nc . |
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[3686] | 120 | [[ -f ${ATM}_grid.nc ]] || cp ${R_IN}/ATM/GRID/${ATM}_grid.nc . |
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[3620] | 121 | |
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| 122 | # |
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[4172] | 123 | echo ${Titre}"Format for OASIS-MCT files : should be NetCDF3 classic or NetCDF3 64 bits"${Norm} |
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[3620] | 124 | # --------------------------------------------------------------------------- |
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[4199] | 125 | FL_FMT=netcdf4 |
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[3620] | 126 | # |
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[4172] | 127 | echo ${Titre}"Cleaning"${Norm} |
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[3620] | 128 | # ---------------------------------------------------------------------------- |
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| 129 | rm -f grids_${CplModel}.nc masks_${CplModel}.nc areas_${CplModel}.nc |
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| 130 | rm -f *_tmp.nc |
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| 131 | |
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| 132 | # |
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| 133 | # |
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[4172] | 134 | echo ${Titre}"Creates ocean fields"${Norm} |
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[3620] | 135 | # ---------------------------------------------------------------------------- |
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[3913] | 136 | for OCEGRID in T U V ; do |
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[4199] | 137 | ncks -C --history --append --variable nav_lon_grid_${OCEGRID},nav_lat_grid_${OCEGRID},bounds_lon_grid_${OCEGRID},bounds_lat_grid_${OCEGRID} ${OCE}_coordinates_mask.nc grids_${CplModel}.nc |
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| 138 | ncks -C --history --append --variable area_grid_${OCEGRID} ${OCE}_coordinates_mask.nc areas_${CplModel}.nc |
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[3620] | 139 | # Inverts mask values and switch to integer |
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[4199] | 140 | ncks --history -C --variable mask_${OCEGRID} ${OCE}_coordinates_mask.nc mask_${OCEGRID}_tmp.nc |
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[3620] | 141 | ncatted --history \ |
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| 142 | --attribute coordinates,mask_${OCEGRID},d,, \ |
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| 143 | --attribute online_operation,mask_${OCEGRID},d,, \ |
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| 144 | --attribute cell_measures,mask_${OCEGRID},d,, \ |
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| 145 | mask_${OCEGRID}_tmp.nc |
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| 146 | |
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[4199] | 147 | ncap2 --history --append --script "mask_${OCEGRID}=int(1-mask_${OCEGRID});" mask_${OCEGRID}_tmp.nc masks_${CplModel}.nc |
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[3901] | 148 | rm mask_${OCEGRID}_tmp.nc |
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[3620] | 149 | ncatted --history \ |
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| 150 | --attribute long_name,mask_${OCEGRID},o,c,"Land-sea mask" \ |
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| 151 | --attribute units,mask_${OCEGRID},o,c,"Land:1, Ocean:0" masks_${CplModel}.nc |
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| 152 | # Change order of dimensions |
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| 153 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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| 154 | ncpdq --permute nvertex_grid_${OCEGRID},y_grid_${OCEGRID},x_grid_${OCEGRID} grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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[3901] | 155 | rm grids_${CplModel}_tmp.nc |
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[3620] | 156 | done |
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| 157 | |
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[4199] | 158 | ncks --history --append --variable lon,lat ${ATM}_grid_maskFrom_${OCE}.nc grids_${CplModel}.nc |
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[3901] | 159 | |
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[3620] | 160 | # |
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[4172] | 161 | echo ${Titre}"We need to have different names for dimensions and variables"${Norm} |
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[3620] | 162 | # ---------------------------------------------------------------------------- |
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[3686] | 163 | ncrename --history --variable lon,alon grids_${CplModel}.nc |
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| 164 | ncrename --history --variable lat,alat grids_${CplModel}.nc |
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[3620] | 165 | |
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| 166 | if [[ ${ATM} = dynamico* || ${ATM} = ICO* ]] ; then |
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[4199] | 167 | ncks --history --append --variable bounds_lon,bounds_lat ${ATM}_grid_maskFrom_${OCE}.nc grids_${CplModel}.nc |
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[3620] | 168 | fi |
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| 169 | |
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[4199] | 170 | ncks --history -C --append --variable aire ${ATM}_grid_maskFrom_${OCE}.nc areas_${CplModel}.nc |
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[3620] | 171 | ncatted --history --attribute coordinates,aire,d,, \ |
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| 172 | --attribute _FillValue,aire,d,, \ |
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| 173 | --attribute missing_value,aire,d,, \ |
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| 174 | --attribute online_operation,aire,d,, \ |
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| 175 | --attribute units,aire,o,c,"m2" \ |
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| 176 | --attribute standard_name,aire,o,c,"cell_area" \ |
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| 177 | areas_${CplModel}.nc |
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| 178 | |
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[4199] | 179 | ncks --history -C --variable OceMask ${ATM}_grid_maskFrom_${OCE}.nc OceMask_tmp.nc |
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[4186] | 180 | ncwa --history --overwrite --average time_counter OceMask_tmp.nc OceMask_tmp2.nc # Suppress time dimension |
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[3620] | 181 | ncatted --history \ |
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[4186] | 182 | --attribute cell_methods,OceMask,d,c, \ |
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[3620] | 183 | --attribute coordinates,OceMask,d,, \ |
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| 184 | --attribute online_operation,OceMask,d,, \ |
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| 185 | --attribute _FillValue,OceMask,d,, \ |
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| 186 | --attribute missing_value,OceMask,d,, \ |
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| 187 | OceMask_tmp.nc |
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[4199] | 188 | ncap2 --history --append --script "OceMask=int(1-OceMask)" OceMask_tmp2.nc masks_${CplModel}.nc # For OASIS, ocean=0, land=1 |
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[3901] | 189 | rm OceMask_tmp.nc |
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[3620] | 190 | ncatted --history \ |
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| 191 | --attribute long_name,OceMask,o,c,"Land-sea mask" \ |
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| 192 | --attribute units,OceMask,o,c,"Land:1, Ocean:0" masks_${CplModel}.nc |
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| 193 | |
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| 194 | ncatted --history --attribute history,global,d,, grids_${CplModel}.nc |
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| 195 | ncatted --history --attribute history,global,d,, masks_${CplModel}.nc |
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| 196 | ncatted --history --attribute history,global,d,, areas_${CplModel}.nc |
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| 197 | |
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| 198 | if [[ ${atm} = *dynamico* || ${atm} = ico* ]] ; then |
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[3686] | 199 | ncrename --history --dimension cell,ycell grids_${CplModel}.nc |
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| 200 | ncrename --history --dimension cell,ycell areas_${CplModel}.nc |
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| 201 | ncrename --history --dimension cell,ycell masks_${CplModel}.nc |
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[3620] | 202 | fi |
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| 203 | # if [[ ${atm} = *lmd* ]] ; then |
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[3686] | 204 | # ncrename --dimension lon,tlmdlon grids_${CplModel}.nc |
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| 205 | # ncrename --dimension lat,tlmdlat grids_${CplModel}.nc |
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| 206 | # ncrename --dimension lon,tlmdlon masks_${CplModel}.nc |
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| 207 | # ncrename --dimension lat,tlmdlat masks_${CplModel}.nc |
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| 208 | # ncrename --dimension lon,tlmdlon areas_${CplModel}.nc |
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| 209 | # ncrename --dimension lat,tlmdlat areas_${CplModel}.nc |
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[3620] | 210 | # fi |
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| 211 | |
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| 212 | # |
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| 213 | if [[ ${atm} = dynamico* || ${atm} = ico* ]] ; then |
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[4186] | 214 | echo ${Titre}"DYNAMICO grids : 1) Set correct order of dimensions, 2) Add a dimension"${Norm} |
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| 215 | # ------------------------------------------------------------------------------------------- |
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[3620] | 216 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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| 217 | ncpdq --permute nvertex,ycell,xcell grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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[4186] | 218 | |
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[3620] | 219 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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| 220 | cat <<EOF >add_dim.nco |
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| 221 | // |
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| 222 | defdim("xcell",1) ; |
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| 223 | alat [ycell,xcell] = alat ; |
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| 224 | alon [ycell,xcell] = alon ; |
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| 225 | bounds_lat [nvertex,ycell,xcell] = bounds_lat ; |
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| 226 | bounds_lon [nvertex,ycell,xcell] = bounds_lon ; |
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| 227 | // |
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| 228 | EOF |
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[4186] | 229 | |
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[4199] | 230 | ncap2 --history --append --script-file add_dim.nco grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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[3620] | 231 | |
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| 232 | mv masks_${CplModel}.nc masks_${CplModel}_tmp.nc |
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[4199] | 233 | ncap2 --history --append --script 'defdim("xcell",1) ' masks_${CplModel}_tmp.nc masks_${CplModel}.nc |
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[4186] | 234 | mv masks_${CplModel}.nc masks_${CplModel}_tmp.nc |
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[4199] | 235 | ncap2 --history --append --script 'OceMask[ycell,xcell]=OceMask' masks_${CplModel}_tmp.nc masks_${CplModel}.nc |
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[3620] | 236 | |
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| 237 | mv areas_${CplModel}.nc areas_${CplModel}_tmp.nc |
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[4199] | 238 | ncap2 --history --append --script 'defdim("xcell",1) ; aire[ycell,xcell]=aire ; ' areas_${CplModel}_tmp.nc areas_${CplModel}.nc |
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[3901] | 239 | |
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| 240 | rm -f grids_${CplModel}_tmp.nc areas_${CplModel}_tmp.nc masks_${CplModel}_tmp.nc |
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[3620] | 241 | fi |
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[4186] | 242 | |
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[3620] | 243 | # |
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[4172] | 244 | echo ${Titre}"Some changes specific to LMDZ lon/lat grid"${Norm} |
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[3620] | 245 | # ---------------------------------------------------------------------------- |
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| 246 | if [[ ${atm} = lmd* ]] ; then |
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[4172] | 247 | echo ${Titre}"Spreads lon and lat to get 2D fields"${Norm} |
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[3620] | 248 | # ----------------------------------------------------------------------- |
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| 249 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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[4199] | 250 | ncap2 --history --append --script "alon[lat,lon]=alon; alat[lat,lon]=alat" grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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[3901] | 251 | rm -f grids_${CplModel}_tmp.nc |
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[3620] | 252 | ncatted --history \ |
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| 253 | --attribute long_name,alon,o,c,"Longitude" \ |
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| 254 | --attribute long_name,alat,o,c,"Latitude" \ |
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| 255 | --attribute units,alon,o,c,"degrees_east" \ |
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| 256 | --attribute units,alat,o,c,"degrees_north" \ |
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| 257 | --attribute grid_type,alon,o,c,"P" \ |
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| 258 | --attribute grid_type,alat,o,c,"P" \ |
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| 259 | --attribute overlap,alon,o,i,0 \ |
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| 260 | --attribute overlap,alat,o,i,0 grids_${CplModel}.nc |
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| 261 | |
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[4172] | 262 | echo ${Titre}"Generates cell corners"${Norm} |
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[3620] | 263 | # ----------------------------------------------------------------------- |
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| 264 | cat <<EOF > add_bounds.nco |
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| 265 | defdim ("nvertex_lmd", 4) ; |
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| 266 | *delta_x = alon(0,1) - alon(0,0) ; |
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| 267 | *delta_y = alat(1,0) - alat(0,0) ; |
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| 268 | // |
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| 269 | bounds_lon[nvertex_lmd,lat,lon] = 0.0 ; |
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| 270 | bounds_lat[nvertex_lmd,lat,lon] = 0.0 ; |
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| 271 | // |
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| 272 | bounds_lon (0,:,:) = alon + delta_x*0.5 ; |
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| 273 | bounds_lat (0,:,:) = alat + delta_y*0.5 ; |
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| 274 | bounds_lon (1,:,:) = alon + delta_x*0.5 ; |
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| 275 | bounds_lat (1,:,:) = alat - delta_y*0.5 ; |
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| 276 | bounds_lon (2,:,:) = alon - delta_x*0.5 ; |
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| 277 | bounds_lat (2,:,:) = alat - delta_y*0.5 ; |
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| 278 | bounds_lon (3,:,:) = alon - delta_x*0.5 ; |
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| 279 | bounds_lat (3,:,:) = alat + delta_y*0.5 ; |
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| 280 | // |
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| 281 | where (bounds_lat > 90.0 ) bounds_lat = 90.0 ;; |
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| 282 | where (bounds_lat < -90.0 ) bounds_lat = -90.0 ;; |
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| 283 | // |
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| 284 | EOF |
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| 285 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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[4199] | 286 | ncap2 --history --script-file add_bounds.nco -O grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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[3901] | 287 | rm grids_${CplModel}_tmp.nc |
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[3620] | 288 | fi |
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| 289 | |
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| 290 | # |
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[4186] | 291 | |
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[4172] | 292 | echo ${Titre}"Generates grid o${atm}, 'o' meaning 'one'"${Norm} |
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| 293 | # same as t${atm} grid, with surfaces set to 1 |
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[3686] | 294 | # and mask to 0 (ocean everywhere, to compute integral over the whole grid)) |
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[3620] | 295 | # This grid is used when field are quantities instead of fluxes (i.e river flow) |
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| 296 | # ---------------------------------------------------------------------------- |
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| 297 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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[4199] | 298 | ncap2 --history --script "o${atm}_lon=alon ; o${atm}_lat=alat ; bounds_o${atm}_lon=bounds_lon; bounds_o${atm}_lat=bounds_lat ; " grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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[3620] | 299 | |
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| 300 | mv areas_${CplModel}.nc areas_${CplModel}_tmp.nc |
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[4199] | 301 | ncap2 --history --script "o${atm}_aire=aire*0.0d+1.0d ; " areas_${CplModel}_tmp.nc areas_${CplModel}.nc |
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[3620] | 302 | |
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| 303 | mv masks_${CplModel}.nc masks_${CplModel}_tmp.nc |
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[4199] | 304 | ncap2 --history --script "o${atm}_mask=int(OceMask)*0+0 ; " masks_${CplModel}_tmp.nc masks_${CplModel}.nc |
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[3620] | 305 | |
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[3901] | 306 | rm grids_${CplModel}_tmp.nc areas_${CplModel}_tmp.nc masks_${CplModel}_tmp.nc |
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| 307 | |
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[4186] | 308 | |
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[4199] | 309 | echo ${Titre}"Generates grid c${atm}, 'o' meaning 'one'"${Norm} |
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| 310 | # same as t${atm} grid, with surfaces set to grid area |
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| 311 | # and mask to 0 (ocean everywhere, to compute integral over the whole grid)) |
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| 312 | # ---------------------------------------------------------------------------- |
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| 313 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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| 314 | ncap2 --history --script "c${atm}_lon=alon ; c${atm}_lat=alat ; bounds_c${atm}_lon=bounds_lon ; bounds_c${atm}_lat=bounds_lat ; " grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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| 315 | |
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| 316 | mv areas_${CplModel}.nc areas_${CplModel}_tmp.nc |
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| 317 | ncap2 --history --script "c${atm}_aire=aire" areas_${CplModel}_tmp.nc areas_${CplModel}.nc |
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| 318 | |
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| 319 | mv masks_${CplModel}.nc masks_${CplModel}_tmp.nc |
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| 320 | ncap2 --history --script "c${atm}_mask=int(OceMask)*0+0 ; " masks_${CplModel}_tmp.nc masks_${CplModel}.nc |
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| 321 | |
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| 322 | rm grids_${CplModel}_tmp.nc areas_${CplModel}_tmp.nc masks_${CplModel}_tmp.nc |
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| 323 | |
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[4186] | 324 | echo ${Titre}"Generates grid o${oce}, 'o' meaning 'one'"${Norm} |
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| 325 | # same as t${oce} grid, with surfaces set to 1 |
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| 326 | # and mask to 0 (ocean everywhere, to compute integral over the whole grid)) |
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| 327 | # This grid is used when field are quantities instead of fluxes (i.e river flow) |
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| 328 | # -------------------------------------------------------------------------------------------------------- |
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| 329 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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[4199] | 330 | ncap2 --history --script "nav_lon_grid_O=nav_lon_grid_T; nav_lat_grid_O=nav_lat_grid_T; bounds_lon_grid_O=bounds_lon_grid_T; bounds_lat_grid_O=bounds_o${oce}_lat=bounds_lat_grid_T; " grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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[4186] | 331 | |
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| 332 | mv areas_${CplModel}.nc areas_${CplModel}_tmp.nc |
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[4199] | 333 | ncap2 --history --script "area_grid_O=area_grid_T*0.0d+1.0d;" areas_${CplModel}_tmp.nc areas_${CplModel}.nc |
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[4186] | 334 | |
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[4199] | 335 | ncks -C --history --overwrite -v maskutil_T ${OCE}_coordinates_mask.nc maskutil_T.nc |
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| 336 | ncap2 --history --append --script "mask_O=maskutil_T; " maskutil_T.nc masks_${CplModel}.nc |
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[4186] | 337 | |
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| 338 | rm grids_${CplModel}_tmp.nc areas_${CplModel}_tmp.nc |
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| 339 | |
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| 340 | |
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| 341 | echo ${Titre}"Creates OCEAN C grid : redundant points removed to compute proper integrals"${Norm} |
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| 342 | # -------------------------------------------------------------------------------------------------------- |
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| 343 | |
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| 344 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
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[4199] | 345 | ncap2 --history --script "nav_lon_grid_C=nav_lon_grid_T; nav_lat_grid_C=nav_lat_grid_T; bounds_lon_grid_C=bounds_lon_grid_T; bounds_lat_grid_C=bounds_o${oce}_lat=bounds_lat_grid_T; " grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
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[4186] | 346 | |
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| 347 | mv areas_${CplModel}.nc areas_${CplModel}_tmp.nc |
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[4199] | 348 | ncap2 --history --script "area_grid_C=area_grid_T ; " areas_${CplModel}_tmp.nc areas_${CplModel}.nc |
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[4186] | 349 | |
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[4199] | 350 | ncap2 --history --append --script "mask_C=maskutil_T; " maskutil_T.nc masks_${CplModel}.nc |
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[4186] | 351 | |
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[4199] | 352 | rm grids_${CplModel}_tmp.nc areas_${CplModel}_tmp.nc maskutil_T.nc |
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[4186] | 353 | |
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[3620] | 354 | # |
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[4172] | 355 | echo ${Titre}"Final renaming"${Norm} |
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[3620] | 356 | # ---------------------------------------------------------------------------- |
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[4186] | 357 | for OCEGRID in T U V O C |
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[3620] | 358 | do |
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| 359 | ocegrid=${OCEGRID~} # To lowercase |
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[3686] | 360 | ncrename --history --variable nav_lon_grid_${OCEGRID},${ocegrid}${oce}.lon grids_${CplModel}.nc |
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| 361 | ncrename --history --variable nav_lat_grid_${OCEGRID},${ocegrid}${oce}.lat grids_${CplModel}.nc |
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| 362 | ncrename --history --variable bounds_lon_grid_${OCEGRID},${ocegrid}${oce}.clo grids_${CplModel}.nc |
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| 363 | ncrename --history --variable bounds_lat_grid_${OCEGRID},${ocegrid}${oce}.cla grids_${CplModel}.nc |
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| 364 | ncrename --history --variable mask_${OCEGRID},${ocegrid}${oce}.msk masks_${CplModel}.nc |
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| 365 | ncrename --history --variable area_grid_${OCEGRID},${ocegrid}${oce}.srf areas_${CplModel}.nc |
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[3620] | 366 | |
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| 367 | ncatted --history \ |
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| 368 | --attribute bounds,${ocegrid}${oce}.lon,m,c,"${ocegrid}${oce}.clo" \ |
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| 369 | --attribute bounds,${ocegrid}${oce}.lat,m,c,"${ocegrid}${oce}.cla" \ |
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| 370 | --attribute units,${ocegrid}${oce}.clo,o,c,"degrees_east" \ |
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| 371 | --attribute units,${ocegrid}${oce}.clo,o,c,"degrees_north" grids_${CplModel}.nc |
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| 372 | done |
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| 373 | |
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[3686] | 374 | ncrename --history --variable alon,t${atm}.lon grids_${CplModel}.nc |
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| 375 | ncrename --history --variable alat,t${atm}.lat grids_${CplModel}.nc |
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| 376 | ncrename --history --variable OceMask,t${atm}.msk masks_${CplModel}.nc |
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| 377 | ncrename --history --variable aire,t${atm}.srf areas_${CplModel}.nc |
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| 378 | ncrename --history --variable bounds_lon,t${atm}.clo grids_${CplModel}.nc |
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| 379 | ncrename --history --variable bounds_lat,t${atm}.cla grids_${CplModel}.nc |
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[3620] | 380 | |
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[4199] | 381 | for ATMGRID in O C ; do |
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[4186] | 382 | atmgrid=${ATMGRID~} # To lowercase |
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[4199] | 383 | ncrename --history --variable ${atmgrid}${atm}_lon,${atmgrid}${atm}.lon grids_${CplModel}.nc |
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| 384 | ncrename --history --variable ${atmgrid}${atm}_lat,${atmgrid}${atm}.lat grids_${CplModel}.nc |
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| 385 | ncrename --history --variable ${atmgrid}${atm}_mask,${atmgrid}${atm}.msk masks_${CplModel}.nc |
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| 386 | ncrename --history --variable ${atmgrid}${atm}_aire,${atmgrid}${atm}.srf areas_${CplModel}.nc |
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| 387 | ncrename --history --variable bounds_${atmgrid}${atm}_lon,${atmgrid}${atm}.clo grids_${CplModel}.nc |
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| 388 | ncrename --history --variable bounds_${atmgrid}${atm}_lat,${atmgrid}${atm}.cla grids_${CplModel}.nc |
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| 389 | done |
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| 390 | |
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| 391 | for ATMGRID in T O C ; do |
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| 392 | atmgrid=${ATMGRID~} # To lowercase |
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[3620] | 393 | ncatted --history \ |
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| 394 | --attribute bounds,${atmgrid}${atm}.lon,c,c,"${atmgrid}${atm}.clo" \ |
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| 395 | --attribute bounds,${atmgrid}${atm}.lat,c,c,"${atmgrid}${atm}.cla" \ |
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[3686] | 396 | --attribute units,${atmgrid}${atm}.clo,o,c,"degrees_east" \ |
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[3620] | 397 | --attribute units,${atmgrid}${atm}.cla,o,c,"degrees_north" grids_${CplModel}.nc |
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| 398 | done |
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| 399 | |
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| 400 | ## |
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[4172] | 401 | echo ${Titre}"Add some useful information in NetCDF headers"${Norm} |
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[3620] | 402 | ## =========================================================================== |
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| 403 | UUID=$(uuid) |
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| 404 | NCO=$(ncks --version |& tail -1|sed 's/ncks //') |
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| 405 | for type in areas masks grids ; do |
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| 406 | ncatted --history \ |
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| 407 | --attribute nco_openmp_thread_number,global,d,, \ |
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| 408 | --attribute uuid,global,d,, \ |
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| 409 | --attribute LongName,global,d,, \ |
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| 410 | --attribute NCO,global,o,c,"NCO netCDF Operator ${NCO} http://nco.sourceforge.net" \ |
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| 411 | --attribute Conventions,global,o,c,"CF-1.6" \ |
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| 412 | --attribute source,global,o,c,"IPSL Earth system model" \ |
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| 413 | --attribute group,global,o,c,"ICMC IPSL Climate Modelling Center" \ |
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| 414 | --attribute production,global,o,c,"$(finger ${LOGNAME} | head -1 | awk '{print $4, $5}') " \ |
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| 415 | --attribute Institution,global,o,c,"IPSL https://www.ipsl.fr" \ |
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| 416 | --attribute Ocean,global,o,c,"${OCE} https://www.nemo-ocean.eu" \ |
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| 417 | --attribute Atmosphere,global,o,c,"${ATM} http://lmdz.lmd.jussieu.fr" \ |
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| 418 | --attribute HOSTNAME,global,o,c,"$(hostname)" \ |
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| 419 | --attribute LOGNAME,global,o,c,"$(whoami)" \ |
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| 420 | --attribute Program,global,o,c,"Generated by ${0}" \ |
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[3718] | 421 | --attribute name,global,o,c,"${type}_${CplModel}.nc" \ |
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[3620] | 422 | --attribute directory,global,o,c,"$(pwd)" \ |
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| 423 | --attribute description,global,o,c,"Fields needed by OASIS-MCT" \ |
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[3718] | 424 | --attribute title,global,o,c,"${type}_${CplModel}.nc" \ |
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[3620] | 425 | --attribute timeStamp,global,o,c,"$(date)" \ |
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| 426 | --attribute associatedFiles,global,o,c,"grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc" \ |
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| 427 | --attribute originalFiles,global,o,c,"${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc"\ |
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| 428 | --attribute uuid,global,o,c,"${UUID}" \ |
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| 429 | --attribute OS,global,o,c,"$(uname -o)" \ |
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| 430 | --attribute release,global,o,c,"$(uname -r)" \ |
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| 431 | --attribute hardware,global,o,c,"$(uname -i)" \ |
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[3718] | 432 | --attribute SVN_Author,global,o,c,"$Author$" \ |
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| 433 | --attribute SVN_Date,global,o,c,"$Date$" \ |
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[3665] | 434 | --attribute SVN_Revision,global,o,c,"$Revision$" \ |
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[3718] | 435 | --attribute SVN_Id,global,o,c,"$Id$" \ |
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| 436 | --attribute SVN_HeardURL,global,o,c,"$HeadURL $" \ |
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[3620] | 437 | ${type}_${CplModel}.nc |
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| 438 | done |
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| 439 | |
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| 440 | |
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| 441 | exit |
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| 442 | # |
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[4172] | 443 | echo ${Titre}"Name of the dimensions ?"${Norm} |
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[3620] | 444 | # ---------------------------------------------------------------------------- |
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[3913] | 445 | for OCEGRID in T U V ; do |
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[3620] | 446 | ocegrid=${OCEGRID~} # Downcase name of grids |
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[3686] | 447 | ncrename --history --dimension x_grid_${OCEGRID},x${ocegrid}${oce} grids_${CplModel}.nc |
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| 448 | ncrename --history --dimension y_grid_${OCEGRID},y${ocegrid}${oce} grids_${CplModel}.nc |
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| 449 | ncrename --history --dimension nvertex_grid_${OCEGRID},crn${ocegrid}${oce} grids_${CplModel}.nc |
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[3620] | 450 | done |
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| 451 | |
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| 452 | ## =========================================================================== |
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[4186] | 453 | echo ${Titre}"Exit from CreateOasisGrids "${Norm} |
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[4172] | 454 | |
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| 455 | ## =========================================================================== |
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[3620] | 456 | ## |
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[4172] | 457 | echo ${Titre}" That's all folk's !!! "${Norm} |
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[3620] | 458 | ## |
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| 459 | ## =========================================================================== |
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