[3620] | 1 | #!/bin/bash |
---|
| 2 | ### =========================================================================== |
---|
| 3 | ### |
---|
| 4 | ### Creates grids.nc, masks.nc and areas.nc for OASIS-MCT |
---|
| 5 | ### |
---|
| 6 | ### =========================================================================== |
---|
| 7 | ## |
---|
| 8 | ## Warning, to install, configure, run, use any of Olivier Marti's |
---|
| 9 | ## software or to read the associated documentation you'll need at least |
---|
| 10 | ## one (1) brain in a reasonably working order. Lack of this implement |
---|
| 11 | ## will void any warranties (either express or implied). |
---|
| 12 | ## O. Marti assumes no responsability for errors, omissions, |
---|
| 13 | ## data loss, or any other consequences caused directly or indirectly by |
---|
| 14 | ## the usage of his software by incorrectly or partially configured |
---|
| 15 | ## personal. |
---|
| 16 | ## |
---|
[3627] | 17 | ### |
---|
| 18 | ### Documentation : https://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM6/MOSAIX |
---|
| 19 | ### |
---|
[3623] | 20 | ## SVN information |
---|
[3626] | 21 | # $Author: omamce $ |
---|
| 22 | # $Date: 2018-03-12 11:17:59 +0100 (Mon, 12 Mar 2018) $ |
---|
| 23 | # $Revision: 3625 $ |
---|
| 24 | # $Id: CreateOasisGrids.bash 3625 2018-03-12 10:17:59Z omamce $ |
---|
[3623] | 25 | # $Log: $ |
---|
[3620] | 26 | |
---|
| 27 | ## |
---|
| 28 | ## Default configuration (may be overrided by command line parameters) |
---|
| 29 | ## =========================================================================== |
---|
| 30 | OCE=ORCA2.3 |
---|
| 31 | # OCE=eORCA1.2 |
---|
| 32 | ATM=ICO30 |
---|
| 33 | #ATM=ICO40 |
---|
| 34 | # ATM=ICO450 |
---|
| 35 | # ATM=LMD144142 |
---|
| 36 | # ATM=LMD9695 |
---|
| 37 | |
---|
| 38 | ## =========================================================================== |
---|
| 39 | ## |
---|
| 40 | ## You should not change anything below this line .... |
---|
| 41 | ## |
---|
| 42 | ## =========================================================================== |
---|
| 43 | |
---|
| 44 | # Defines computer |
---|
| 45 | # ================ |
---|
| 46 | if [[ $(hostname) = curie* ]] ; then arch=curie ; center=tgcc ; fi |
---|
| 47 | if [[ $(hostname) = irene* ]] ; then arch=irene ; center=tgcc ; fi |
---|
| 48 | PROGRAM=$(basename ${0}) |
---|
| 49 | |
---|
| 50 | case ${arch} in |
---|
| 51 | ( curie | irene ) |
---|
| 52 | set +vx |
---|
| 53 | module unload cdo nco ferret |
---|
| 54 | module unload netcdf hdf5 |
---|
| 55 | module load python # /2.7.12 |
---|
| 56 | module load netcdf/4.3.3.1_hdf5_parallel # Version for XIOS |
---|
| 57 | module load nco |
---|
| 58 | R_IN=$(ccc_home -u igcmg --cccwork)/IGCM |
---|
| 59 | TMPDIR=${SCRATCHDIR}/TMP |
---|
| 60 | SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR}} |
---|
| 61 | ;; |
---|
| 62 | ( * ) |
---|
| 63 | exit -1 |
---|
| 64 | ;; |
---|
| 65 | esac |
---|
| 66 | ## |
---|
| 67 | ## Command line parameters |
---|
| 68 | ## =========================================================================== |
---|
| 69 | set -o verbose |
---|
| 70 | set -o xtrace |
---|
| 71 | |
---|
| 72 | while [[ ${1} = -* ]] ; do |
---|
| 73 | case ${1} in |
---|
| 74 | ( -- ) shift ; break ;; |
---|
| 75 | ( -o=* | --oce=* ) OCE=${1##*=} ; echo OCE:${OCE} ;; |
---|
| 76 | ( -o | --oce ) shift ; OCE=${1} ; echo OCE:${OCE} ;; |
---|
| 77 | ( -a=* | --atm=* ) ATM=${1##*=} ; echo ATM:${ATM} ;; |
---|
| 78 | ( -a | --atm ) shift ; ATM=${1} ; echo ATM:${ATM} ;; |
---|
| 79 | ( -v | --verbose ) set -o verbose ;; |
---|
| 80 | ( -x | --xtrace ) set -o xtrace ;; |
---|
| 81 | ( -e ) set -e ;; |
---|
| 82 | ( -V | --noverbose ) set +o verbose ;; |
---|
| 83 | ( -X | --noxtrace ) set +o xtrace ;; |
---|
| 84 | ( -E ) set +e ;; |
---|
| 85 | ( -* ) echo ${Bold}"Unknown option : ${1}"${Norm} ; return 1 ;; |
---|
| 86 | esac |
---|
| 87 | shift |
---|
| 88 | done |
---|
| 89 | |
---|
| 90 | ## |
---|
| 91 | ## Short names (grid names in Oasis) |
---|
| 92 | ## =========================================================================== |
---|
| 93 | case ${OCE} in |
---|
| 94 | ( *ORC*) oce=orc ;; |
---|
| 95 | esac |
---|
| 96 | case ${ATM} in |
---|
| 97 | ( *ICO* ) atm=ico ;; |
---|
| 98 | ( *dynamico* ) atm=ico ;; |
---|
| 99 | ( *lmd* | *LMD* ) atm=lmd ;; |
---|
| 100 | esac |
---|
| 101 | |
---|
| 102 | CplModel=${OCE}x${ATM} |
---|
| 103 | |
---|
| 104 | ## |
---|
| 105 | ## Get input files |
---|
| 106 | ## =========================================================================== |
---|
| 107 | [[ -f ${OCE}_coordinates_mask.nc ]] || cp ${R_IN}/OCE/NEMO/${OCE}/${OCE}_coordinates_mask.nc . |
---|
| 108 | [[ -f ${ATM}_grid.nc ]] || cp ${R_IN}/ATM/${ATM}/${ATM}_grid.nc . |
---|
| 109 | |
---|
| 110 | # |
---|
| 111 | # Format for OASIS-MCT files : should be NetCDF3 classic or NetCDF3 64 bits |
---|
| 112 | # --------------------------------------------------------------------------- |
---|
| 113 | FL_FMT=64bit |
---|
| 114 | |
---|
| 115 | # |
---|
| 116 | # Cleaning |
---|
| 117 | # ---------------------------------------------------------------------------- |
---|
| 118 | rm -f grids_${CplModel}.nc masks_${CplModel}.nc areas_${CplModel}.nc |
---|
| 119 | rm -f *_tmp.nc |
---|
| 120 | |
---|
| 121 | # |
---|
| 122 | # Creates NetCDF3 version of input files |
---|
| 123 | # ---------------------------------------------------------------------------- |
---|
| 124 | ncks --overwrite --fl_fmt=${FL_FMT} --history ${OCE}_coordinates_mask.nc ${OCE}_coordinates_mask_${FL_FMT}.nc |
---|
| 125 | ncks --overwrite --fl_fmt=${FL_FMT} --history ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}_${FL_FMT}.nc |
---|
| 126 | # |
---|
| 127 | # Creates ocean fields |
---|
| 128 | # ---------------------------------------------------------------------------- |
---|
| 129 | |
---|
| 130 | for OCEGRID in T U V ; do |
---|
| 131 | ncks --fl_fmt=${FL_FMT} -C --history --append -v nav_lon_grid_${OCEGRID},nav_lat_grid_${OCEGRID},bounds_lon_grid_${OCEGRID},bounds_lat_grid_${OCEGRID} ${OCE}_coordinates_mask_${FL_FMT}.nc grids_${CplModel}.nc |
---|
| 132 | ncks --fl_fmt=${FL_FMT} -C --history --append -v area_grid_${OCEGRID} ${OCE}_coordinates_mask_${FL_FMT}.nc areas_${CplModel}.nc |
---|
| 133 | # Inverts mask values and switch to integer |
---|
| 134 | ncks --fl_fmt=${FL_FMT} --history -C -v mask_${OCEGRID} ${OCE}_coordinates_mask_${FL_FMT}.nc mask_${OCEGRID}_tmp.nc |
---|
| 135 | ncatted --history \ |
---|
| 136 | --attribute coordinates,mask_${OCEGRID},d,, \ |
---|
| 137 | --attribute online_operation,mask_${OCEGRID},d,, \ |
---|
| 138 | --attribute cell_measures,mask_${OCEGRID},d,, \ |
---|
| 139 | mask_${OCEGRID}_tmp.nc |
---|
| 140 | |
---|
| 141 | ncap2 --fl_fmt=${FL_FMT} --history --append -s "mask_${OCEGRID}=int(1-mask_${OCEGRID});" mask_${OCEGRID}_tmp.nc masks_${CplModel}.nc |
---|
| 142 | ncatted --history \ |
---|
| 143 | --attribute long_name,mask_${OCEGRID},o,c,"Land-sea mask" \ |
---|
| 144 | --attribute units,mask_${OCEGRID},o,c,"Land:1, Ocean:0" masks_${CplModel}.nc |
---|
| 145 | # Change order of dimensions |
---|
| 146 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
---|
| 147 | ncpdq --permute nvertex_grid_${OCEGRID},y_grid_${OCEGRID},x_grid_${OCEGRID} grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
---|
| 148 | done |
---|
| 149 | |
---|
| 150 | ncks --history --append -v lon,lat ${ATM}_grid_maskFrom_${OCE}_${FL_FMT}.nc grids_${CplModel}.nc |
---|
| 151 | |
---|
| 152 | # |
---|
| 153 | # We need to have different names for dimensions and variables |
---|
| 154 | # ---------------------------------------------------------------------------- |
---|
| 155 | ncrename --history -v lon,alon grids_${CplModel}.nc |
---|
| 156 | ncrename --history -v lat,alat grids_${CplModel}.nc |
---|
| 157 | |
---|
| 158 | if [[ ${ATM} = dynamico* || ${ATM} = ICO* ]] ; then |
---|
| 159 | ncks --fl_fmt=${FL_FMT} --history --append -v bounds_lon,bounds_lat ${ATM}_grid_maskFrom_${OCE}_${FL_FMT}.nc grids_${CplModel}.nc |
---|
| 160 | fi |
---|
| 161 | |
---|
| 162 | ncks --fl_fmt=${FL_FMT} --history -C --append -v aire ${ATM}_grid_maskFrom_${OCE}_${FL_FMT}.nc areas_${CplModel}.nc |
---|
| 163 | ncatted --history --attribute coordinates,aire,d,, \ |
---|
| 164 | --attribute _FillValue,aire,d,, \ |
---|
| 165 | --attribute missing_value,aire,d,, \ |
---|
| 166 | --attribute online_operation,aire,d,, \ |
---|
| 167 | --attribute units,aire,o,c,"m2" \ |
---|
| 168 | --attribute standard_name,aire,o,c,"cell_area" \ |
---|
| 169 | areas_${CplModel}.nc |
---|
| 170 | |
---|
| 171 | ncks --fl_fmt=${FL_FMT} --history -C -v OceMask ${ATM}_grid_maskFrom_${OCE}_${FL_FMT}.nc OceMask_tmp.nc |
---|
| 172 | ncatted --history \ |
---|
| 173 | --attribute coordinates,OceMask,d,, \ |
---|
| 174 | --attribute online_operation,OceMask,d,, \ |
---|
| 175 | --attribute _FillValue,OceMask,d,, \ |
---|
| 176 | --attribute missing_value,OceMask,d,, \ |
---|
| 177 | OceMask_tmp.nc |
---|
| 178 | ncap2 --fl_fmt=${FL_FMT} --history --append -s "OceMask=int(1-OceMask)" OceMask_tmp.nc masks_${CplModel}.nc # For OASIS, ocean=0, land=1 |
---|
| 179 | ncatted --history \ |
---|
| 180 | --attribute long_name,OceMask,o,c,"Land-sea mask" \ |
---|
| 181 | --attribute units,OceMask,o,c,"Land:1, Ocean:0" masks_${CplModel}.nc |
---|
| 182 | |
---|
| 183 | ncatted --history --attribute history,global,d,, grids_${CplModel}.nc |
---|
| 184 | ncatted --history --attribute history,global,d,, masks_${CplModel}.nc |
---|
| 185 | ncatted --history --attribute history,global,d,, areas_${CplModel}.nc |
---|
| 186 | |
---|
| 187 | if [[ ${atm} = *dynamico* || ${atm} = ico* ]] ; then |
---|
| 188 | ncrename --history -d cell,ycell grids_${CplModel}.nc |
---|
| 189 | ncrename --history -d cell,ycell areas_${CplModel}.nc |
---|
| 190 | ncrename --history -d cell,ycell masks_${CplModel}.nc |
---|
| 191 | fi |
---|
| 192 | # if [[ ${atm} = *lmd* ]] ; then |
---|
| 193 | # ncrename -d lon,tlmdlon grids_${CplModel}.nc |
---|
| 194 | # ncrename -d lat,tlmdlat grids_${CplModel}.nc |
---|
| 195 | # ncrename -d lon,tlmdlon masks_${CplModel}.nc |
---|
| 196 | # ncrename -d lat,tlmdlat masks_${CplModel}.nc |
---|
| 197 | # ncrename -d lon,tlmdlon areas_${CplModel}.nc |
---|
| 198 | # ncrename -d lat,tlmdlat areas_${CplModel}.nc |
---|
| 199 | # fi |
---|
| 200 | |
---|
| 201 | # |
---|
| 202 | # DYNAMICO grids : |
---|
| 203 | # - Set correct order of dimensions |
---|
| 204 | # - Add a dimension |
---|
| 205 | # ---------------------------------------------------------------------------- |
---|
| 206 | if [[ ${atm} = dynamico* || ${atm} = ico* ]] ; then |
---|
| 207 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
---|
| 208 | ncpdq --permute nvertex,ycell,xcell grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
---|
| 209 | |
---|
| 210 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
---|
| 211 | cat <<EOF >add_dim.nco |
---|
| 212 | // |
---|
| 213 | defdim("xcell",1) ; |
---|
| 214 | alat [ycell,xcell] = alat ; |
---|
| 215 | alon [ycell,xcell] = alon ; |
---|
| 216 | bounds_lat [nvertex,ycell,xcell] = bounds_lat ; |
---|
| 217 | bounds_lon [nvertex,ycell,xcell] = bounds_lon ; |
---|
| 218 | // |
---|
| 219 | EOF |
---|
| 220 | |
---|
| 221 | ncap2 --fl_fmt=${FL_FMT} --history --append -S add_dim.nco grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
---|
| 222 | |
---|
| 223 | mv masks_${CplModel}.nc masks_${CplModel}_tmp.nc |
---|
| 224 | ncap2 --fl_fmt=${FL_FMT} --history --append -s 'defdim("xcell",1) ; OceMask[time_counter,ycell,xcell]=OceMask(:,:)' masks_${CplModel}_tmp.nc masks_${CplModel}.nc |
---|
| 225 | |
---|
| 226 | mv areas_${CplModel}.nc areas_${CplModel}_tmp.nc |
---|
| 227 | ncap2 --fl_fmt=${FL_FMT} --history --append -s 'defdim("xcell",1) ; aire[ycell,xcell]=aire(:) ; ' areas_${CplModel}_tmp.nc areas_${CplModel}.nc |
---|
| 228 | fi |
---|
| 229 | |
---|
| 230 | # |
---|
| 231 | # Some changes specific to LMDZ lon/lat grid |
---|
| 232 | # ---------------------------------------------------------------------------- |
---|
| 233 | if [[ ${atm} = lmd* ]] ; then |
---|
| 234 | # Spreads lon and lat to get 2D fields |
---|
| 235 | # ----------------------------------------------------------------------- |
---|
| 236 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
---|
| 237 | ncap2 --fl_fmt=${FL_FMT} --history --append -s "alon[lat,lon]=alon; alat[lat,lon]=alat" grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
---|
| 238 | ncatted --history \ |
---|
| 239 | --attribute long_name,alon,o,c,"Longitude" \ |
---|
| 240 | --attribute long_name,alat,o,c,"Latitude" \ |
---|
| 241 | --attribute units,alon,o,c,"degrees_east" \ |
---|
| 242 | --attribute units,alat,o,c,"degrees_north" \ |
---|
| 243 | --attribute grid_type,alon,o,c,"P" \ |
---|
| 244 | --attribute grid_type,alat,o,c,"P" \ |
---|
| 245 | --attribute overlap,alon,o,i,0 \ |
---|
| 246 | --attribute overlap,alat,o,i,0 grids_${CplModel}.nc |
---|
| 247 | |
---|
| 248 | # Generates cell corners |
---|
| 249 | # ----------------------------------------------------------------------- |
---|
| 250 | cat <<EOF > add_bounds.nco |
---|
| 251 | defdim ("nvertex_lmd", 4) ; |
---|
| 252 | *delta_x = alon(0,1) - alon(0,0) ; |
---|
| 253 | *delta_y = alat(1,0) - alat(0,0) ; |
---|
| 254 | // |
---|
| 255 | bounds_lon[nvertex_lmd,lat,lon] = 0.0 ; |
---|
| 256 | bounds_lat[nvertex_lmd,lat,lon] = 0.0 ; |
---|
| 257 | // |
---|
| 258 | bounds_lon (0,:,:) = alon + delta_x*0.5 ; |
---|
| 259 | bounds_lat (0,:,:) = alat + delta_y*0.5 ; |
---|
| 260 | bounds_lon (1,:,:) = alon + delta_x*0.5 ; |
---|
| 261 | bounds_lat (1,:,:) = alat - delta_y*0.5 ; |
---|
| 262 | bounds_lon (2,:,:) = alon - delta_x*0.5 ; |
---|
| 263 | bounds_lat (2,:,:) = alat - delta_y*0.5 ; |
---|
| 264 | bounds_lon (3,:,:) = alon - delta_x*0.5 ; |
---|
| 265 | bounds_lat (3,:,:) = alat + delta_y*0.5 ; |
---|
| 266 | // |
---|
| 267 | where (bounds_lat > 90.0 ) bounds_lat = 90.0 ;; |
---|
| 268 | where (bounds_lat < -90.0 ) bounds_lat = -90.0 ;; |
---|
| 269 | // |
---|
| 270 | EOF |
---|
| 271 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
---|
| 272 | ncap2 --fl_fmt=${FL_FMT} --history -S add_bounds.nco -O grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
---|
| 273 | fi |
---|
| 274 | |
---|
| 275 | # |
---|
| 276 | # Generates grid "aone" : same as t-ocean grid, with surfaces set to 1 |
---|
| 277 | # This grid is used when field are quantities instead of fluxes (i.e river flow) |
---|
| 278 | # ---------------------------------------------------------------------------- |
---|
| 279 | mv grids_${CplModel}.nc grids_${CplModel}_tmp.nc |
---|
| 280 | ncap2 --fl_fmt=${FL_FMT} --history -s "aone_lon=alon; aone_lat=alat; bounds_aone_lon=bounds_lon; bounds_aone_lat=bounds_lat; " grids_${CplModel}_tmp.nc grids_${CplModel}.nc |
---|
| 281 | |
---|
| 282 | mv areas_${CplModel}.nc areas_${CplModel}_tmp.nc |
---|
| 283 | ncap2 --fl_fmt=${FL_FMT} --history -s "aone_aire=aire*0+1; " areas_${CplModel}_tmp.nc areas_${CplModel}.nc |
---|
| 284 | |
---|
| 285 | mv masks_${CplModel}.nc masks_${CplModel}_tmp.nc |
---|
| 286 | ncap2 --fl_fmt=${FL_FMT} --history -s "aone_mask=int(OceMask); " masks_${CplModel}_tmp.nc masks_${CplModel}.nc |
---|
| 287 | |
---|
| 288 | # |
---|
| 289 | # Final renaming |
---|
| 290 | # ---------------------------------------------------------------------------- |
---|
| 291 | for OCEGRID in T U V |
---|
| 292 | do |
---|
| 293 | ocegrid=${OCEGRID~} # To lowercase |
---|
| 294 | ncrename --history -v nav_lon_grid_${OCEGRID},${ocegrid}${oce}.lon grids_${CplModel}.nc |
---|
| 295 | ncrename --history -v nav_lat_grid_${OCEGRID},${ocegrid}${oce}.lat grids_${CplModel}.nc |
---|
| 296 | ncrename --history -v bounds_lon_grid_${OCEGRID},${ocegrid}${oce}.clo grids_${CplModel}.nc |
---|
| 297 | ncrename --history -v bounds_lat_grid_${OCEGRID},${ocegrid}${oce}.cla grids_${CplModel}.nc |
---|
| 298 | ncrename --history -v mask_${OCEGRID},${ocegrid}${oce}.msk masks_${CplModel}.nc |
---|
| 299 | ncrename --history -v area_grid_${OCEGRID},${ocegrid}${oce}.srf areas_${CplModel}.nc |
---|
| 300 | |
---|
| 301 | ncatted --history \ |
---|
| 302 | --attribute bounds,${ocegrid}${oce}.lon,m,c,"${ocegrid}${oce}.clo" \ |
---|
| 303 | --attribute bounds,${ocegrid}${oce}.lat,m,c,"${ocegrid}${oce}.cla" \ |
---|
| 304 | --attribute units,${ocegrid}${oce}.clo,o,c,"degrees_east" \ |
---|
| 305 | --attribute units,${ocegrid}${oce}.clo,o,c,"degrees_north" grids_${CplModel}.nc |
---|
| 306 | done |
---|
| 307 | |
---|
| 308 | ncrename --history -v alon,t${atm}.lon grids_${CplModel}.nc |
---|
| 309 | ncrename --history -v alat,t${atm}.lat grids_${CplModel}.nc |
---|
| 310 | ncrename --history -v aone_lon,o${atm}.lon grids_${CplModel}.nc |
---|
| 311 | ncrename --history -v aone_lat,o${atm}.lat grids_${CplModel}.nc |
---|
| 312 | ncrename --history -v OceMask,t${atm}.msk masks_${CplModel}.nc |
---|
| 313 | ncrename --history -v aone_mask,o${atm}.msk masks_${CplModel}.nc |
---|
| 314 | ncrename --history -v aire,t${atm}.srf areas_${CplModel}.nc |
---|
| 315 | ncrename --history -v aone_aire,o${atm}.srf areas_${CplModel}.nc |
---|
| 316 | |
---|
| 317 | ncrename --history -v bounds_lon,t${atm}.clo grids_${CplModel}.nc |
---|
| 318 | ncrename --history -v bounds_lat,t${atm}.cla grids_${CplModel}.nc |
---|
| 319 | ncrename --history -v bounds_aone_lon,o${atm}.clo grids_${CplModel}.nc |
---|
| 320 | ncrename --history -v bounds_aone_lat,o${atm}.cla grids_${CplModel}.nc |
---|
| 321 | |
---|
| 322 | for atmgrid in t o ; do |
---|
| 323 | ncatted --history \ |
---|
| 324 | --attribute bounds,${atmgrid}${atm}.lon,c,c,"${atmgrid}${atm}.clo" \ |
---|
| 325 | --attribute bounds,${atmgrid}${atm}.lat,c,c,"${atmgrid}${atm}.cla" \ |
---|
| 326 | --attribute units,${atmgrid}${atm}.clo,o,c,"degrees_east" \ |
---|
| 327 | --attribute units,${atmgrid}${atm}.cla,o,c,"degrees_north" grids_${CplModel}.nc |
---|
| 328 | done |
---|
| 329 | |
---|
| 330 | ## |
---|
| 331 | ## Change all NetCDF files to NetCDF 3 format |
---|
| 332 | ## =========================================================================== |
---|
| 333 | for InFile in areas_${CplModel}.nc grids_${CplModel}.nc masks_${CplModel}.nc ; do |
---|
| 334 | if [[ $(ncdump -k ${InFile}) = *netCDF-4* ]] ; then |
---|
| 335 | mv ${InFile} tmp_${InFile} |
---|
| 336 | ncks --fl_fmt=${FL_FMT} --history tmp_${InFile} ${InFile} |
---|
| 337 | fi |
---|
| 338 | done |
---|
| 339 | |
---|
| 340 | ## |
---|
| 341 | ## Add some useful information in NetCDF headers |
---|
| 342 | ## =========================================================================== |
---|
| 343 | UUID=$(uuid) |
---|
| 344 | NCO=$(ncks --version |& tail -1|sed 's/ncks //') |
---|
| 345 | for type in areas masks grids ; do |
---|
| 346 | ncatted --history \ |
---|
| 347 | --attribute nco_openmp_thread_number,global,d,, \ |
---|
| 348 | --attribute uuid,global,d,, \ |
---|
| 349 | --attribute LongName,global,d,, \ |
---|
| 350 | --attribute NCO,global,o,c,"NCO netCDF Operator ${NCO} http://nco.sourceforge.net" \ |
---|
| 351 | --attribute Conventions,global,o,c,"CF-1.6" \ |
---|
| 352 | --attribute source,global,o,c,"IPSL Earth system model" \ |
---|
| 353 | --attribute group,global,o,c,"ICMC IPSL Climate Modelling Center" \ |
---|
| 354 | --attribute production,global,o,c,"$(finger ${LOGNAME} | head -1 | awk '{print $4, $5}') " \ |
---|
| 355 | --attribute Institution,global,o,c,"IPSL https://www.ipsl.fr" \ |
---|
| 356 | --attribute Ocean,global,o,c,"${OCE} https://www.nemo-ocean.eu" \ |
---|
| 357 | --attribute Atmosphere,global,o,c,"${ATM} http://lmdz.lmd.jussieu.fr" \ |
---|
| 358 | --attribute HOSTNAME,global,o,c,"$(hostname)" \ |
---|
| 359 | --attribute LOGNAME,global,o,c,"$(whoami)" \ |
---|
| 360 | --attribute Program,global,o,c,"Generated by ${0}" \ |
---|
| 361 | --attribute name,global,o,c,"${type}_${CplModel}.nc" \ |
---|
| 362 | --attribute directory,global,o,c,"$(pwd)" \ |
---|
| 363 | --attribute description,global,o,c,"Fields needed by OASIS-MCT" \ |
---|
| 364 | --attribute title,global,o,c,"${type}_${CplModel}.nc" \ |
---|
| 365 | --attribute timeStamp,global,o,c,"$(date)" \ |
---|
| 366 | --attribute associatedFiles,global,o,c,"grids_${CplModel}.nc areas_${CplModel}.nc masks_${CplModel}.nc" \ |
---|
| 367 | --attribute originalFiles,global,o,c,"${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc"\ |
---|
| 368 | --attribute uuid,global,o,c,"${UUID}" \ |
---|
| 369 | --attribute OS,global,o,c,"$(uname -o)" \ |
---|
| 370 | --attribute release,global,o,c,"$(uname -r)" \ |
---|
| 371 | --attribute hardware,global,o,c,"$(uname -i)" \ |
---|
[3623] | 372 | --attribute Comment,global,o,c,"Preliminary attempt - Do not trust !" \ |
---|
[3626] | 373 | --attribute SVN_Author,global,o,c,"$Author: omamce $" \ |
---|
| 374 | --attribute SVN_Date,global,o,c,"$Date: 2018-03-12 11:17:59 +0100 (Mon, 12 Mar 2018) $" \ |
---|
| 375 | --attribute SVN_Revision,global,o,c,"$Revision: 3625 $" \ |
---|
| 376 | --attribute SVN_Id,global,o,c,"$Id: CreateOasisGrids.bash 3625 2018-03-12 10:17:59Z omamce $" \ |
---|
| 377 | --attribute SVN_Log,global,o,c,"$Log: $" \ |
---|
[3620] | 378 | ${type}_${CplModel}.nc |
---|
| 379 | done |
---|
| 380 | |
---|
| 381 | ## |
---|
| 382 | ## Cleaning |
---|
| 383 | ## =========================================================================== |
---|
| 384 | #rm *_tmp.nc ${OCE}_coordinates_mask_${FL_FMT}.nc ${ATM}_grid_maskFrom_${OCE}_${FL_FMT}.nc *.nco |
---|
| 385 | |
---|
| 386 | exit |
---|
| 387 | # |
---|
| 388 | # Name of the dimensions ? |
---|
| 389 | # ---------------------------------------------------------------------------- |
---|
| 390 | for OCEGRID in T U V ; do |
---|
| 391 | ocegrid=${OCEGRID~} # Downcase name of grids |
---|
| 392 | ncrename --history -d x_grid_${OCEGRID},x${ocegrid}${oce} grids_${CplModel}.nc |
---|
| 393 | ncrename --history -d y_grid_${OCEGRID},y${ocegrid}${oce} grids_${CplModel}.nc |
---|
| 394 | ncrename --history -d nvertex_grid_${OCEGRID},crn${ocegrid}${oce} grids_${CplModel}.nc |
---|
| 395 | done |
---|
| 396 | |
---|
| 397 | ## =========================================================================== |
---|
| 398 | ## |
---|
| 399 | ## That's all folk's !!! |
---|
| 400 | ## |
---|
| 401 | ## =========================================================================== |
---|