[2713] | 1 | #!/usr/bin/env python |
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| 2 | # -*- coding: utf-8 -*- |
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| 3 | |
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[2775] | 4 | # ==================================================================== # |
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| 5 | # Author: Sonia Labetoulle # |
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| 6 | # Contact: sonia.labetoulle _at_ ipsl.jussieu.fr # |
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| 7 | # Created: 2016 # |
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| 8 | # History: # |
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| 9 | # Modification: # |
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| 10 | # ==================================================================== # |
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| 11 | |
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[2713] | 12 | # this must come first |
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| 13 | from __future__ import print_function, unicode_literals, division |
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| 14 | |
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| 15 | # standard library imports |
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| 16 | import socket |
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| 17 | import os |
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| 18 | import os.path |
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| 19 | import glob |
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| 20 | import shutil |
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| 21 | import subprocess |
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| 22 | import datetime as dt |
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[2775] | 23 | import numpy as np |
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[2713] | 24 | import ConfigParser as cp |
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| 25 | |
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| 26 | # Application library imports |
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| 27 | |
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| 28 | |
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[2775] | 29 | ######################################################################## |
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| 30 | def dods_cp(img_out, img_name, DODS): |
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[2713] | 31 | """ |
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| 32 | """ |
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[2775] | 33 | if not DODS["DIR"]: |
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[2713] | 34 | print("DODS directory not defined") |
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| 35 | return |
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| 36 | |
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[2775] | 37 | # .. Copy pdf file to dods server .. |
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| 38 | # ================================== |
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| 39 | command = [ |
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| 40 | "scp", |
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| 41 | img_out, |
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| 42 | "{}@{}:{}".format( |
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| 43 | DODS["USER"], |
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| 44 | DODS["SERVER"], |
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| 45 | os.path.join(DODS["DIR"], "pdf", img_name + ".pdf") |
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| 46 | ) |
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| 47 | ] |
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| 48 | try : |
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| 49 | subprocess.call(command) |
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| 50 | except Exception as rc : |
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| 51 | print("Error in scp for {}:\n{}".format(command, rc)) |
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| 52 | |
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| 53 | # .. Convert pdf to temporary png .. |
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| 54 | # ================================== |
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| 55 | img_png = img_out.replace(".pdf", ".png") |
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| 56 | command = ["convert", "-density", "200", img_out, img_png] |
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| 57 | |
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| 58 | try : |
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| 59 | subprocess.call(command) |
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| 60 | except Exception as rc : |
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| 61 | print("Error in convert for {}:\n{}".format(fileout, rc)) |
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| 62 | |
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| 63 | # .. Copy png file to dods server .. |
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| 64 | # ================================== |
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| 65 | command = [ |
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| 66 | "scp", |
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| 67 | img_png, |
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| 68 | "{}@{}:{}".format( |
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| 69 | DODS["USER"], |
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| 70 | DODS["SERVER"], |
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| 71 | os.path.join(DODS["DIR"], "img", img_name + ".png") |
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| 72 | ) |
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| 73 | ] |
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| 74 | try : |
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| 75 | subprocess.call(command) |
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| 76 | except Exception as rc : |
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| 77 | print("Error in scp for {}:\n{}".format(command, rc)) |
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| 78 | |
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| 79 | # .. Delete temporary png file .. |
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| 80 | # =============================== |
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| 81 | |
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| 82 | return |
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| 83 | |
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[2713] | 84 | basefile = os.path.basename(filein) |
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| 85 | |
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| 86 | fileout = os.path.join(DIR["DODS"], basefile) |
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| 87 | filepng = os.path.join(DIR["DODS"], "img", basefile.split(".")[0] + ".png") |
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| 88 | |
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| 89 | #Â Copy file |
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| 90 | shutil.copy(filein, fileout) |
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| 91 | |
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| 92 | # Convert it to png for web page |
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| 93 | command = ["convert", "-density", "200", fileout, filepng] |
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| 94 | |
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| 95 | try : |
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| 96 | subprocess.call(command) |
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| 97 | except Exception as rc : |
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| 98 | print("Error in convert for {}:\n{}".format(fileout, rc)) |
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| 99 | |
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| 100 | return |
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| 101 | |
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| 102 | |
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[2775] | 103 | ######################################################################## |
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[2713] | 104 | def parse_config(filename): |
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| 105 | |
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| 106 | DIR = {} |
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[2775] | 107 | DODS = {} |
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[2713] | 108 | |
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| 109 | config = cp.ConfigParser(allow_no_value=True) |
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| 110 | config.optionxform = str |
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| 111 | config.read(filename) |
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| 112 | |
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[2775] | 113 | for section in ("projet", "directories"): |
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[2713] | 114 | if not config.has_section(section): |
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| 115 | print("Missing section {} in {}, we stop".format(section, filename)) |
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| 116 | exit(1) |
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| 117 | |
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[2775] | 118 | # ... Project name ... |
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| 119 | # -------------------- |
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[2713] | 120 | section = "projet" |
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| 121 | option = "name" |
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| 122 | project_name = config.get(section, option) |
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| 123 | |
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[2775] | 124 | # ... Common directories ... |
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| 125 | # -------------------------- |
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[2713] | 126 | section = "directories" |
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| 127 | for option in config.options(section): |
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| 128 | DIR[option] = config.get(section, option) |
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| 129 | |
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| 130 | if DIR[option] and not os.path.isdir(DIR[option]): |
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| 131 | print("mkdir {}".format(DIR[option])) |
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| 132 | try : |
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| 133 | os.makedirs(DIR[option]) |
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| 134 | except Exception as rc : |
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| 135 | print("Could not create {}:\n{}".format(DIR[option], rc)) |
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| 136 | |
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[2775] | 137 | # .. DODS configuration ... |
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| 138 | # ------------------------- |
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| 139 | section = "dods" |
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[2713] | 140 | for option in config.options(section): |
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[2775] | 141 | DODS[option] = config.get(section, option) |
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[2713] | 142 | |
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[2775] | 143 | return (DIR, DODS) |
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[2713] | 144 | |
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| 145 | |
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[2775] | 146 | ######################################################################## |
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[2713] | 147 | def string_to_percent(x): |
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| 148 | """ |
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| 149 | """ |
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| 150 | return float(x.strip("%"))/100. |
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| 151 | |
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| 152 | |
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[2775] | 153 | ######################################################################## |
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[2713] | 154 | def string_to_size_unit(x): |
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| 155 | """ |
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| 156 | """ |
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| 157 | if unicode(x).isdecimal(): |
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| 158 | x = x + "o" |
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| 159 | |
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| 160 | (size, unit) = (float(x[:-1]), x[-1]) |
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| 161 | |
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| 162 | return SizeUnit(size, unit) |
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| 163 | |
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| 164 | |
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[2775] | 165 | ######################################################################## |
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[2713] | 166 | def string_to_float(x): |
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| 167 | """ |
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| 168 | """ |
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| 169 | return float(x.strip("h")) |
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| 170 | |
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| 171 | |
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[2775] | 172 | ######################################################################## |
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| 173 | def string_to_date(ssaammjj, fmt="%Y%m%d"): |
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[2713] | 174 | """ |
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| 175 | """ |
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[2775] | 176 | fmts = ["%Y%m%d", "%Y-%m-%d", "%Y_%m_%d"] |
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[2713] | 177 | |
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[2775] | 178 | for fmt in fmts: |
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| 179 | try: |
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| 180 | res = dt.datetime.strptime(ssaammjj, fmt) |
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| 181 | except Exception as rc: |
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| 182 | pass |
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| 183 | else: |
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| 184 | break |
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[2713] | 185 | |
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[2775] | 186 | return res.date() |
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| 187 | |
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| 188 | |
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| 189 | ######################################################################## |
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[2713] | 190 | def string_to_datetime(string, fmt="%Y-%m-%d-%H:%M"): |
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| 191 | """ |
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| 192 | """ |
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| 193 | return dt.datetime.strptime(string, fmt) |
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| 194 | |
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| 195 | |
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[2775] | 196 | # ######################################################################## |
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[2713] | 197 | # def date_to_string(dtdate, fmt="%Y-%m-%d"): |
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| 198 | # """ |
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| 199 | # """ |
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| 200 | # return dt.datetime.strftime(dtdate, fmt) |
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| 201 | |
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| 202 | |
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[2775] | 203 | ######################################################################## |
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[2713] | 204 | def where_we_run(): |
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| 205 | |
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| 206 | res = "" |
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| 207 | if "curie" in socket.getfqdn(): |
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| 208 | res = "curie" |
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| 209 | elif "ipsl" in socket.getfqdn(): |
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| 210 | res = "ipsl" |
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| 211 | else: |
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| 212 | res = "default" |
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| 213 | |
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| 214 | return res |
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| 215 | |
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| 216 | |
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[2775] | 217 | ######################################################################## |
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[2713] | 218 | def get_last_file(dir_data, pattern): |
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| 219 | """ |
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| 220 | """ |
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| 221 | current_dir = os.getcwd() |
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| 222 | os.chdir(dir_data) |
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| 223 | filename = pattern + "*" |
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| 224 | file_list = glob.glob(os.path.join(dir_data, filename)) |
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| 225 | if file_list: |
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| 226 | res = sorted(file_list)[-1] |
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| 227 | else: |
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| 228 | res = None |
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| 229 | os.chdir(current_dir) |
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| 230 | return res |
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| 231 | |
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| 232 | |
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[2775] | 233 | ######################################################################## |
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[2713] | 234 | def get_input_files(dir_data, file_list): |
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| 235 | """ |
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| 236 | """ |
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| 237 | res = [] |
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| 238 | |
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| 239 | for filename in file_list: |
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| 240 | res.append(get_last_file(dir_data, filename)) |
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| 241 | |
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| 242 | if None in res: |
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| 243 | print("\nMissing one or more input files, we stop.") |
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| 244 | for f_in, f_out in zip(file_list, res): |
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| 245 | print("=> {}: {}".format(f_in, f_out)) |
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| 246 | exit(1) |
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| 247 | |
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| 248 | return res |
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| 249 | |
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| 250 | |
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[2775] | 251 | ######################################################################## |
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| 252 | def plot_save(img_out, title): |
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[2713] | 253 | """ |
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| 254 | """ |
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| 255 | from matplotlib.backends.backend_pdf import PdfPages |
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| 256 | |
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| 257 | dpi = 200. |
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| 258 | |
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[2775] | 259 | dirname = os.path.dirname(img_out) |
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| 260 | if not os.path.isdir(dirname): |
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| 261 | print("mkdir {}".format(dirname)) |
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| 262 | try : |
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| 263 | os.makedirs(dirname) |
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| 264 | except Exception as rc : |
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| 265 | print("Could not create {}:\n{}".format(dirname, rc)) |
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| 266 | |
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| 267 | with PdfPages(img_out) as pdf: |
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[2713] | 268 | pdf.savefig(dpi=dpi) |
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| 269 | |
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[2775] | 270 | # ... pdf file's metadata ... |
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| 271 | # --------------------------- |
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[2713] | 272 | d = pdf.infodict() |
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| 273 | d["Title"] = title |
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| 274 | d["Author"] = os.path.basename(__file__) |
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| 275 | # d["Subject"] = "Time spent over specific commands during create_ts \ |
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| 276 | # jobs at IDRIS and four configurations at TGCC" |
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| 277 | # d["Keywords"] = "bench create_ts TGCC IDRIS ncrcat" |
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| 278 | # d["CreationDate"] = dt.datetime(2009, 11, 13) |
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| 279 | # d["ModDate"] = dt.datetime.today() |
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| 280 | |
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| 281 | |
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[2775] | 282 | ######################################################################## |
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| 283 | class AllocItem(object): |
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[2713] | 284 | |
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[2775] | 285 | #--------------------------------------------------------------------- |
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| 286 | def __init__( |
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| 287 | self, |
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| 288 | alloc_id, |
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| 289 | machine, |
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| 290 | node_type, |
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| 291 | start_date, |
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| 292 | end_date, |
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| 293 | alloc |
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| 294 | ): |
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| 295 | |
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| 296 | self.alloc_id = alloc_id |
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| 297 | self.machine = machine |
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| 298 | self.node_type = node_type |
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| 299 | self.start_date = start_date |
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| 300 | self.end_date = end_date |
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| 301 | self.alloc = alloc |
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| 302 | |
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| 303 | delta = self.end_date - self.start_date |
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| 304 | self.days = delta.days + 1 |
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| 305 | |
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| 306 | self.daily_conso = self.alloc / self.days |
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| 307 | |
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| 308 | #--------------------------------------------------------------------- |
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| 309 | def __repr__(self): |
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| 310 | return "{} ({:%Y%m%d}/{:%Y%m%d}): {}".format( |
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| 311 | self.machine, |
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| 312 | self.start_date, |
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| 313 | self.end_date, |
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| 314 | self.alloc, |
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| 315 | ) |
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| 316 | |
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| 317 | |
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| 318 | ######################################################################## |
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[2713] | 319 | class Project(object): |
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| 320 | |
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[2775] | 321 | #--------------------------------------------------------------------- |
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| 322 | def __init__(self, project_name, center): |
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[2713] | 323 | self.project = project_name |
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[2775] | 324 | self.centre = center |
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| 325 | self.alloc_items = [] |
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[2713] | 326 | |
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[2775] | 327 | #--------------------------------------------------------------------- |
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| 328 | def __repr__(self): |
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| 329 | return "{}/{}: {}".format( |
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| 330 | self.project, |
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| 331 | self.centre, |
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| 332 | self.alloc_items, |
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| 333 | ) |
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| 334 | |
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| 335 | #--------------------------------------------------------------------- |
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| 336 | def add_alloc( |
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| 337 | self, |
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| 338 | alloc_id, |
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| 339 | machine, |
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| 340 | node_type, |
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| 341 | start_date, |
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| 342 | end_date, |
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| 343 | alloc |
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| 344 | ): |
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| 345 | |
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| 346 | alloc_item = AllocItem( |
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| 347 | alloc_id, |
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| 348 | machine, |
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| 349 | node_type, |
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| 350 | start_date, |
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| 351 | end_date, |
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| 352 | alloc |
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| 353 | ) |
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| 354 | |
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| 355 | self.alloc_items.append(alloc_item) |
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| 356 | |
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| 357 | self.start_date = min( |
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| 358 | [item.start_date for item in self.alloc_items] |
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| 359 | ) |
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| 360 | self.end_date = max( |
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| 361 | [item.end_date for item in self.alloc_items] |
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| 362 | ) |
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| 363 | |
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| 364 | self.alloc = sum( |
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| 365 | [item.alloc for item in self.alloc_items] |
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| 366 | ) |
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| 367 | self.max_daily_conso = max( |
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| 368 | [item.daily_conso for item in self.alloc_items] |
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| 369 | ) |
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| 370 | |
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| 371 | |
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| 372 | self.days = sum( |
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| 373 | [item.days for item in self.alloc_items] |
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| 374 | ) |
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| 375 | |
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| 376 | self.nb_alloc = len(self.alloc_items) |
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| 377 | |
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| 378 | #--------------------------------------------------------------------- |
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| 379 | def get_theo_eq(self, dates): |
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| 380 | |
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| 381 | x0 = 0 |
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| 382 | y0 = 0. |
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| 383 | |
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| 384 | for item in self.alloc_items: |
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| 385 | yi = y0 |
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| 386 | yf = y0 + item.alloc / self.alloc |
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| 387 | |
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| 388 | if item.start_date.date() in dates: |
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| 389 | xi = dates.index(item.start_date.date()) |
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| 390 | else: |
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| 391 | xi = 0 |
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| 392 | |
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| 393 | if item.end_date.date() in dates: |
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| 394 | xf = dates.index(item.end_date.date()) |
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| 395 | else: |
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| 396 | xf = len(dates) + 1 |
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| 397 | |
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| 398 | m = np.array([[xi, 1.], [xf+1, 1.]]) |
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| 399 | n = np.array([yi, yf]) |
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| 400 | |
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| 401 | try: |
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| 402 | polynome = np.poly1d(np.linalg.solve(m, n)) |
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| 403 | except np.linalg.linalg.LinAlgError: |
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| 404 | print("error poly") |
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| 405 | item.theo_eq = None |
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| 406 | else: |
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| 407 | item.theo_eq = polynome |
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| 408 | item.xi = xi |
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| 409 | item.xf = xf |
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| 410 | item.yi = yi |
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| 411 | item.yf = yf |
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| 412 | |
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| 413 | y0 = yf |
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| 414 | |
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| 415 | #--------------------------------------------------------------------- |
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[2713] | 416 | def fill_data(self, row): |
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[2775] | 417 | # self.id = row["id"] |
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| 418 | # self.machine = row["machine"] |
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| 419 | # self.node = row["node_type"] |
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| 420 | # self.start_date = row["start_date"] |
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| 421 | # self.end_date = row["end_date"] |
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| 422 | # self.alloc = row["total_hrs"] |
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[2713] | 423 | |
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| 424 | delta = self.end_date - self.start_date |
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| 425 | self.days = delta.days + 1 |
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| 426 | |
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| 427 | |
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[2775] | 428 | ######################################################################## |
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[2713] | 429 | class SizeUnit(object): |
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[2775] | 430 | #--------------------------------------------------------------------- |
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[2713] | 431 | def __init__(self, size, unit): |
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| 432 | self.size = size |
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| 433 | self.unit = unit |
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| 434 | |
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[2775] | 435 | #--------------------------------------------------------------------- |
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[2713] | 436 | def __repr__(self): |
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| 437 | return "{:6.2f}{}o".format(self.size, self.unit) |
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| 438 | |
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[2775] | 439 | #--------------------------------------------------------------------- |
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[2713] | 440 | def convert_size(self, unit_out): |
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| 441 | """ |
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| 442 | """ |
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| 443 | prefixes = ["o", "K", "M", "G", "T", "P", "H"] |
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| 444 | |
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| 445 | if not self.size or \ |
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| 446 | self.unit == unit_out: |
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| 447 | size_out = self.size |
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| 448 | else: |
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| 449 | idx_deb = prefixes.index(self.unit) |
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| 450 | idx_fin = prefixes.index(unit_out) |
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| 451 | size_out = self.size |
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| 452 | for i in xrange(abs(idx_fin-idx_deb)): |
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| 453 | if idx_fin > idx_deb: |
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| 454 | size_out = size_out / 1024 |
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| 455 | else: |
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| 456 | size_out = size_out * 1024 |
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| 457 | |
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| 458 | return SizeUnit(size_out, unit_out) |
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| 459 | |
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| 460 | |
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[2775] | 461 | ######################################################################## |
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[2713] | 462 | if __name__ == '__main__': |
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| 463 | pass |
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