1 | #!/bin/bash |
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2 | module load nco/4.6.9 |
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3 | |
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4 | #=== Indices of chosen datasets among available collection (see DATANAMES after) |
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5 | DOPROCESS=('n' 'y') #--- PROCESSED DATA TYPES (SSTandSeaIce, ozone) |
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6 | IXPROCESS=("0" "1 2 3 4") #--- PROCESSED DATASETS INDICES |
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7 | recomp='n' #--- RECOMPUTE FILES THAT ARE ALREADY PRESENT (y/n) |
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8 | |
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9 | #=============================================================================== |
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10 | #=== DETERMINE THE MACHINE NAME ================================================ |
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11 | #=============================================================================== |
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12 | if [ ${HOSTNAME:0:3} = 'ada' ]; then machine='ada'; work=$WORKDIR |
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13 | elif [ ${HOSTNAME:0:5} = 'curie' ]; then machine='curie'; work=$CCCWORKDIR |
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14 | elif [ ${HOSTNAME:0:6} = 'ciclad' ]; then machine='ciclad'; work=/home/$USER/tmp |
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15 | else echo "Not set up for this machine yet, sorry."; exit; fi |
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16 | export machine=$machine |
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17 | |
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18 | #=============================================================================== |
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19 | #=== PARAMETERS NOT SUPPOSED TO BE CHANGED OFTEN =============================== |
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20 | #=============================================================================== |
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21 | case $machine in |
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22 | ada) work=$WORKDIR |
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23 | DATAIN="" |
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24 | DATAOU='/workgpfs/rech/psl/rpsl035/IGCM/ATM' ;; |
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25 | curie) work=$WORKDIR |
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26 | DATAIN="" |
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27 | DATAOU='/ccc/work/cont003/igcmg/igcmg/IGCM/ATM' ;; |
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28 | ciclad) work=/data/$USER |
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29 | DATAIN='/prodigfs/project' |
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30 | DATAOU='/prodigfs/ipslfs/igcmg/IGCM/ATM' ;; |
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31 | esac |
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32 | if [ "$DATAIN" = "" ]; then echo "Raw data folder for $machine has to be specified."; exit; fi |
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33 | DATAOU=/data/dcugnet$DATAOU # No write acces to $DATAOU => temporary storage space. |
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34 | |
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35 | #--- DATA TO TREAT (INTERANNUAL AND CLIMATOLOGIES): "SSTsAndSeaIce" "ozone": |
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36 | DATATYPES=('SSTsAndSeaIce' 'ozone') |
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37 | f='${var}_${datasets}_${datatype}_${project}_${dataset}_${grid}_${Yb}01-${Ye}??.nc' |
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38 | FILES_IN=("input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-0/ocean/mon/\${var}/gn/v20160609/$f \ |
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39 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-1/ocean/mon/\${var}/gn/v20161020/$f \ |
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40 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-2/ocean/mon/\${var}/gn/v20170419/$f \ |
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41 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-3/ocean/mon/\${var}/gn/v20171031/$f \ |
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42 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-4/ocean/mon/\${var}/gn/v20180427/$f" \ |
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43 | "input4MIPs/CMIP6/CMIP/UReading/UReading-CCMI-1-0/atmos/mon/\${var}/gn/v20160711/$f \ |
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44 | input4MIPs/CMIP6/ScenarioMIP/UReading/UReading-CCMI-ssp126-1-0/atmos/mon/\${var}/gn/v20181101/$f \ |
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45 | input4MIPs/CMIP6/ScenarioMIP/UReading/UReading-CCMI-ssp245-1-0/atmos/mon/\${var}/gn/v20181101/$f \ |
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46 | input4MIPs/CMIP6/ScenarioMIP/UReading/UReading-CCMI-ssp370-1-0/atmos/mon/\${var}/gn/v20181101/$f \ |
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47 | input4MIPs/CMIP6/ScenarioMIP/UReading/UReading-CCMI-ssp585-1-0/atmos/mon/\${var}/gn/v20181101/$f \ |
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48 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-stratO3-1-0/atmos/mon/\${var}/gn/v20170814/$f \ |
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49 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-nat-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
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50 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-sol-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
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51 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-volc-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
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52 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-sol-1-1/atmos/mon/\${var}/gn/v20180525/$f \ |
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53 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-nat-1-1/atmos/mon/\${var}/gn/v20180525/$f \ |
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54 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-volc-1-1/atmos/mon/\${var}/gn/v20180525/$f \ |
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55 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-ssp245-nat-1-0/atmos/mon/\${var}/gn/v20180820/$f") |
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56 | CLIMS_IN=("/ / / / /" \ |
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57 | "input4MIPs/CMIP6/CMIP/UReading/UReading-CCMI-1-0/atmos/monC/\${var}/gn/v20160830/$f / / / / /") |
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58 | VARNAM_IN=('tosbcs siconcbcs' 'vmro3') |
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59 | DIRSTRUCT='datasets/exercise/project/origin/dataset/domain/frequency/var/grid/version/' |
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60 | DATADATES=() #--- DETERMINED LATER |
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61 | |
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62 | #--- RESULTS STORAGE |
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63 | if [ ! -d $DATAOU ]; then mkdir -p $DATAOU; fi |
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64 | FILES_OU=('LIMIT/AMIP.${version}/original/amipbcs_${var}_360x180_${Y}.nc' \ |
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65 | 'OZONE/${origin}/${dataset}.${version}/original/${var}_${Y}.nc') |
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66 | # SSTsAndSeaIce: ozone: |
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67 | VARNAM_OU=('tosbcs sicbcs' 'tro3') #--- VARIABLES NAMES IN FILES |
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68 | VARNAMFOU=('sst sic' 'tro3') #--- VARIABLES NAMES FOR FILES NAMES |
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69 | CLIMDATES=('1870-1899 1979-2008' '1850-1879 1979-2008') |
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70 | coords="X:longitude Y:latitude Z:plev" #--- COORDINATES NAMES KNOWN BY ce0l |
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71 | |
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72 | #=== EXCEPTIONS FOR STORAGE TREE ERRORS: variables not deduced from folder name parsing |
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73 | ex="PCMDI-AMIP-1-1-0:grid=gs1x1" # <dset>:<var>=<val> if dataset=dset: export var=val |
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74 | |
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75 | #================================================================================== |
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76 | #=== FEW FUNCTIONS (not specific to this script) |
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77 | #================================================================================== |
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78 | source tools.bash |
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79 | |
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80 | #=== DETERMINE TIME INTERVALS AND DISPLAY WHAT DATASET ARE ABOUT TO BE TREATED |
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81 | for i in $(eval echo {0..$((${#DATATYPES[@]}-1))}); do |
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82 | fin=${FILES_IN[$i]}; dt=${DATATYPES[$i]}; var=${VARNAM_IN[$i]%% *} |
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83 | DATADATES[$i]=$(get_date $var $dt $DATAIN $DIRSTRUCT $fin $ex) |
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84 | date=(${DATADATES[$i]}); fin=($fin); if [ ${DOPROCESS[$i]} != 'y' ]; then continue; fi |
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85 | echo ">> Chosen $dt:" |
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86 | for ka in ${IXPROCESS[$i]}; do d=${date[$ka]}; dy=${d%%-*}; d=${d#*-} |
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87 | echo " * ${fin[$ka]%/*} (${dy}-${d%%-*})" |
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88 | done |
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89 | done |
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90 | |
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91 | #================================================================================== |
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92 | for i in $(eval echo {0..$((${#DATATYPES[@]}-1))}); do #=== LOOP ON DATASETS |
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93 | #================================================================================== |
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94 | if [ ${DOPROCESS[$i]} != 'y' ]; then continue; fi |
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95 | dt=${DATATYPES[$i]} #=== SSTAndSeaIce, ozone... |
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96 | fin=(${FILES_IN[$i]}); vin=(${VARNAM_IN[$i]}) #=== INPUT FILE/VAR NAMES (each version) |
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97 | fou=${FILES_OU[$i]} ; vou=(${VARNAM_OU[$i]}) #=== OUTPUT FILE/VAR NAMES (single pair) |
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98 | date=(${DATADATES[$i]}) #=== ${Yb}-${Ye}-${dY} |
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99 | vfo=(${VARNAMFOU[$i]}) #=== VARNAME, FOR FILE NAMING |
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100 | cli=(${CLIMS_IN[$i]}) #=== SINGLE FILE CLIMATO |
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101 | #================================================================================ |
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102 | for is in ${IXPROCESS[$i]}; do #=== LOOP ON VERSIONS |
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103 | #================================================================================ |
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104 | parse_dir ${fin[$is]} $DIRSTRUCT $ex #--- Parse input directory |
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105 | dso=$(remove_version $dataset); dso=${dso#*-} #--- For naming purpose |
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106 | if [ $dso = "CCMI" ]; then dso="historical"; fi #--- NAMING EXCEPTION: UReading-CCMI-1-0 |
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107 | #============================================================================== |
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108 | for iv in $(eval echo {0..$((${#vin[@]}-1))}); do #--- Loop on variables |
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109 | #============================================================================== |
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110 | da=${date[$is]}; Yi=${da%%-*}; Yf=${da#*-}; dYt=${Yf#*-}; Yf=${Yf%%-*} |
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111 | v_in=${vin[$iv]}; v_ou=${vou[$iv]} #--- Variables names |
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112 | f_in=$(var=$v_in; Yb=\${Yb}; Ye=\${Ye}; datatype=$dt; eval echo $DATAIN/${fin[$is]}) |
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113 | axis=$(get_grid $(Yb=$Yi; Ye=????; eval echo $f_in) $v_in) |
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114 | res=${axis#*=}; axis=${axis%=*} |
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115 | Zonal='n'; if [ $axis = 'XYZT' ]; then Zonal='y'; fi #--- Zonal mean ? For 3D files |
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116 | f_ou=$(var=${vfo[$iv]}; Y=\${Y}; dataset=$dso; eval echo $DATAOU/${fou}) |
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117 | if [ $Zonal = 'y' ]; then #--- 2 directories for 3D files |
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118 | res3D=${res%x*}; res2D=${res3D#*x}_zonal; f_ou=${f_ou%/*}/\${res}/${f_ou##*/} |
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119 | fi |
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120 | echo ">> BUILDING 12 MONTHS ${v_in} FILES FOR THE $Yi-$Yf PERIOD USING $dataset DATASET ($version)..." |
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121 | Ye=$((Yi-1)) |
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122 | #============================================================================ |
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123 | for Y in $(eval echo {$Yi..$Yf}); do #--- Loop on years |
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124 | #============================================================================ |
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125 | fO=$(Y=$Y; res=${res3D}; eval echo ${f_ou}) #--- Original resolution |
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126 | if [ $Y -eq $((Ye+1)) ]; then Yb=$Y; dY=${dYt%%-*}; Ye=$((Yb+dY-1)); dYt=${dYt#*-}; fi |
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127 | if [[ ! -f $fO || $recomp = 'y' ]]; then |
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128 | extract $v_in,$v_ou $f_in,$fO $Yb,$Ye,$dY $Y 0 #--- Field extraction |
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129 | rename_dims $fO $coords #--- Rename dims/atts |
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130 | fi |
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131 | if [ $Zonal = 'y' ]; then #--- Zonal mean |
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132 | fZ=$(Y=$Y; res=${res2D}; eval echo ${f_ou}) #--- Zonal File name |
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133 | if [[ ! -f $fZ || $recomp = 'y' ]]; then zonal_mean $fO $fZ; fi |
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134 | fi |
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135 | progress_bar $((Y-Yi+1)) $((Yf-Yi+1)) 50 #--- Check progress |
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136 | #============================================================================ |
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137 | done |
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138 | #============================================================================ |
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139 | for per in ${CLIMDATES[$i]}; do #--- Loop on periods |
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140 | #============================================================================ |
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141 | Yb=${per%%-*}; Ye=${per##*-}; Yc=${Yb}_${Ye}_clim; c='n'; cli0=${cli[$is]} |
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142 | |
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143 | #=== Skip periods outside available years interval |
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144 | if [[ $Yb -lt ${da%%-*} || ${Yb} -gt ${da#*-} || $Yb -lt ${da%%-*} || ${Yb} -gt ${da#*-} ]]; then |
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145 | continue |
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146 | fi |
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147 | |
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148 | #=== Is there a single file climatology available ? |
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149 | fc0=$(var=$v_in; Yb=$Yb; Ye=$Yb; datatype=$dt; eval echo $DATAIN/${cli0}) |
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150 | if [[ ${cli0} != "/" && -f $fc0 ]]; then c='y'; Yc=${Yb}_${Yb}_clim; fi |
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151 | |
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152 | fO=$(Y=\$Y; res=${res3D}; eval echo ${f_ou}) #--- Original resolution |
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153 | fOc=$(Y=$Yc; res=${res3D}; eval echo ${f_ou}) #--- ", target climatology |
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154 | if [[ ! -f $fOc || $recomp = 'y' ]]; then |
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155 | if [ "$c" = "y" ]; then |
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156 | echo ">> BUILDING $v_ou CLIMATOLOGY USING SPECIAL FILE ${fC0##*/} ($version)..." |
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157 | cp $fc0 $fOc ; rename_dims $fOc $coords #--- Rename dims/atts |
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158 | else |
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159 | echo ">> BUILDING $v_ou CLIMATOLOGY USING YEARLY FILES FOR $per ($version)..." |
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160 | make_clim ${v_ou} $fO $per 0 #--- Compute climatology |
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161 | fi |
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162 | fi |
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163 | if [ $Zonal = 'y' ]; then |
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164 | fZc=$(Y=$Yc; res=${res2D}; eval echo ${f_ou}) #--- Zonal File name |
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165 | if [[ ! -f $fZc || $recomp = 'y' ]]; then zonal_mean $fOc $fZc; fi |
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166 | fi |
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167 | done |
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168 | #============================================================================ |
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169 | done |
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170 | #============================================================================== |
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171 | done |
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172 | #================================================================================ |
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173 | done |
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174 | #================================================================================== |
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175 | |
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176 | |
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