| 1 | #!/bin/bash |
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| 2 | module load nco/4.6.9 |
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| 3 | |
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| 4 | #=== Indices of chosen datasets among available collection (see DATANAMES after) |
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| 5 | DOPROCESS=('n' 'y') #--- PROCESSED DATA TYPES (SSTandSeaIce, ozone) |
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| 6 | IXPROCESS=("0" "5 6 7") #--- PROCESSED DATASETS INDICES |
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| 7 | recomp='n' #--- RECOMPUTE FILES THAT ARE ALREADY PRESENT (y/n) |
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| 8 | |
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| 9 | #=============================================================================== |
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| 10 | #=== DETERMINE THE MACHINE NAME ================================================ |
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| 11 | #=============================================================================== |
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| 12 | if [ ${HOSTNAME:0:3} = 'ada' ]; then machine='ada'; work=$WORKDIR |
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| 13 | elif [ ${HOSTNAME:0:5} = 'curie' ]; then machine='curie'; work=$CCCWORKDIR |
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| 14 | elif [ ${HOSTNAME:0:6} = 'ciclad' ]; then machine='ciclad'; work=/home/$USER/tmp |
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| 15 | else echo "Not set up for this machine yet, sorry."; exit; fi |
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| 16 | export machine=$machine |
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| 17 | |
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| 18 | #=============================================================================== |
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| 19 | #=== PARAMETERS NOT SUPPOSED TO BE CHANGED OFTEN =============================== |
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| 20 | #=============================================================================== |
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| 21 | case $machine in |
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| 22 | ada) work=$WORKDIR |
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| 23 | DATAIN="" |
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| 24 | DATAOU='/workgpfs/rech/psl/rpsl035/IGCM/ATM' ;; |
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| 25 | curie) work=$WORKDIR |
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| 26 | DATAIN="" |
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| 27 | DATAOU='/ccc/work/cont003/igcmg/igcmg/IGCM/ATM' ;; |
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| 28 | ciclad) work=/data/$USER |
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| 29 | DATAIN='/prodigfs/project' |
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| 30 | DATAOU='/prodigfs/ipslfs/igcmg/IGCM/ATM' ;; |
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| 31 | esac |
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| 32 | if [ "$DATAIN" = "" ]; then echo "Raw data folder for $machine has to be specified."; exit; fi |
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| 33 | # DATAOU=/data/dcugnet$DATAOU # No write acces to $DATAOU => temporary storage space. |
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| 34 | |
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| 35 | #--- DATA TO TREAT (INTERANNUAL AND CLIMATOLOGIES): "SSTsAndSeaIce" "ozone": |
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| 36 | DATATYPES=('SSTsAndSeaIce' 'ozone') |
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| 37 | f='${var}_${datasets}_${datatype}_${project}_${dataset}_${grid}_${Yb}01-${Ye}??.nc' |
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| 38 | FILES_IN=("input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-0/ocean/mon/\${var}/gn/v20160609/$f \ |
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| 39 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-1/ocean/mon/\${var}/gn/v20161020/$f \ |
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| 40 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-2/ocean/mon/\${var}/gn/v20170419/$f \ |
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| 41 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-3/ocean/mon/\${var}/gn/v20171031/$f \ |
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| 42 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-4/ocean/mon/\${var}/gn/v20180427/$f" \ |
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| 43 | "input4MIPs/CMIP6/CMIP/UReading/UReading-CCMI-1-0/atmos/mon/\${var}/gn/v20160711/$f \ |
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| 44 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-stratO3-1-0/atmos/mon/\${var}/gn/v20170814/$f \ |
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| 45 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-nat-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
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| 46 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-sol-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
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| 47 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-volc-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
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| 48 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-sol-1-1/atmos/mon/\${var}/gn/v20180525/$f \ |
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| 49 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-nat-1-1/atmos/mon/\${var}/gn/v20180525/$f \ |
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| 50 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-volc-1-1/atmos/mon/\${var}/gn/v20180525/$f") |
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| 51 | CLIMS_IN=("/ / / / /" \ |
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| 52 | "input4MIPs/CMIP6/CMIP/UReading/UReading-CCMI-1-0/atmos/monC/\${var}/gn/v20160830/$f / / / /") |
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| 53 | VARNAM_IN=('tosbcs siconcbcs' 'vmro3') |
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| 54 | DIRSTRUCT='datasets/exercise/project/origin/dataset/domain/frequency/var/grid/version/' |
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| 55 | DATADATES=() #--- DETERMINED LATER |
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| 56 | |
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| 57 | #--- RESULTS STORAGE |
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| 58 | if [ ! -d $DATAOU ]; then mkdir -p $DATAOU; fi |
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| 59 | FILES_OU=('LIMIT/AMIP.${version}/original/amipbcs_${var}_360x180_${Y}.nc' \ |
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| 60 | 'OZONE/${origin}/${dataset}.${version}/original/${var}_${Y}.nc') |
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| 61 | # SSTsAndSeaIce: ozone: |
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| 62 | VARNAM_OU=('tosbcs sicbcs' 'tro3') #--- VARIABLES NAMES IN FILES |
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| 63 | VARNAMFOU=('sst sic' 'tro3') #--- VARIABLES NAMES FOR FILES NAMES |
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| 64 | CLIMDATES=('1870-1899 1979-2008' '1850-1879 1979-2008') |
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| 65 | coords="X:longitude Y:latitude Z:plev" #--- COORDINATES NAMES KNOWN BY ce0l |
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| 66 | |
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| 67 | #=== EXCEPTIONS FOR STORAGE TREE ERRORS: variables not deduced from folder name parsing |
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| 68 | ex="PCMDI-AMIP-1-1-0:grid=gs1x1" # <dset>:<var>=<val> if dataset=dset: export var=val |
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| 69 | |
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| 70 | #================================================================================== |
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| 71 | #=== FEW FUNCTIONS (not specific to this script) |
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| 72 | #================================================================================== |
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| 73 | source tools.bash |
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| 74 | |
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| 75 | #=== DETERMINE TIME INTERVALS AND DISPLAY WHAT DATASET ARE ABOUT TO BE TREATED |
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| 76 | for i in $(eval echo {0..$((${#DATATYPES[@]}-1))}); do |
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| 77 | fin=${FILES_IN[$i]}; dt=${DATATYPES[$i]}; var=${VARNAM_IN[$i]%% *} |
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| 78 | DATADATES[$i]=$(get_date $var $dt $DATAIN $DIRSTRUCT $fin $ex) |
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| 79 | date=(${DATADATES[$i]}); fin=($fin); if [ ${DOPROCESS[$i]} != 'y' ]; then continue; fi |
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| 80 | echo ">> Chosen $dt:" |
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| 81 | for ka in ${IXPROCESS[$i]}; do echo " * ${fin[$ka]%/*} (${date[$ka]%-*})"; done |
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| 82 | done |
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| 83 | |
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| 84 | #================================================================================== |
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| 85 | for i in $(eval echo {0..$((${#DATATYPES[@]}-1))}); do #=== LOOP ON DATASETS |
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| 86 | #================================================================================== |
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| 87 | if [ ${DOPROCESS[$i]} != 'y' ]; then continue; fi |
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| 88 | dt=${DATATYPES[$i]} #=== SSTAndSeaIce, ozone... |
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| 89 | fin=(${FILES_IN[$i]}); vin=(${VARNAM_IN[$i]}) #=== INPUT FILE/VAR NAMES (each version) |
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| 90 | fou=${FILES_OU[$i]} ; vou=(${VARNAM_OU[$i]}) #=== OUTPUT FILE/VAR NAMES (single pair) |
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| 91 | date=(${DATADATES[$i]}) #=== ${Yb}-${Ye}-${dY} |
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| 92 | vfo=(${VARNAMFOU[$i]}) #=== VARNAME, FOR FILE NAMING |
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| 93 | cli=(${CLIMS_IN[$i]}) #=== SINGLE FILE CLIMATO |
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| 94 | #================================================================================ |
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| 95 | for is in ${IXPROCESS[$i]}; do #=== LOOP ON VERSIONS |
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| 96 | #================================================================================ |
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| 97 | parse_dir ${fin[$is]} $DIRSTRUCT $ex #--- Parse input directory |
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| 98 | dso=$dataset #--- For naming purpose |
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| 99 | case $dt in #--- NAMING EXCEPTIONS |
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| 100 | ozone) dso=${dso#*hist-}; dso=hist-${dso%%-*} |
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| 101 | if [ "$dataset" = "UReading-CCMI-1-0" ]; then dso="historical"; fi ;; |
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| 102 | SSTAndSeaIce) if [ "$dataset" = "PCMDI-AMIP-1-1-0" ]; then dso='AMIP'; fi ;; |
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| 103 | esac |
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| 104 | #============================================================================== |
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| 105 | for iv in $(eval echo {0..$((${#vin[@]}-1))}); do #--- Loop on variables |
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| 106 | #============================================================================== |
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| 107 | da=${date[$is]}; Yb=${da%%-*}; Ye=${da#*-}; dY=${Ye##*-}; Ye=${Ye%-*} |
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| 108 | v_in=${vin[$iv]}; v_ou=${vou[$iv]} #--- Variables names |
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| 109 | f_in=$(var=$v_in; Yb=\${Yb}; Ye=\${Ye}; datatype=$dt; eval echo $DATAIN/${fin[$is]}) |
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| 110 | axis=$(get_grid $(Yb=$Yb; Ye=????; eval echo $f_in) $v_in) |
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| 111 | res=${axis#*=}; axis=${axis%=*} |
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| 112 | Zonal='n'; if [ $axis = 'XYZT' ]; then Zonal='y'; fi #--- Zonal mean ? For 3D files |
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| 113 | f_ou=$(var=${vfo[$iv]}; Y=\${Y}; dataset=$dso; eval echo $DATAOU/${fou}) |
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| 114 | if [ $Zonal = 'y' ]; then #--- 2 directories for 3D files |
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| 115 | res3D=${res%x*}; res2D=${res3D#*x}_zonal; f_ou=${f_ou%/*}/\${res}/${f_ou##*/} |
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| 116 | fi |
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| 117 | echo ">> BUILDING 12 MONTHS ${v_in} FILES FOR THE $Yb-$Ye PERIOD USING $dataset DATASET ($version)..." |
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| 118 | #============================================================================ |
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| 119 | for Y in $(eval echo {$Yb..$Ye}); do #--- Loop on years |
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| 120 | #============================================================================ |
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| 121 | fO=$(Y=$Y; res=${res3D}; eval echo ${f_ou}) #--- Original resolution |
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| 122 | if [[ ! -f $fO || $recomp = 'y' ]]; then |
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| 123 | extract $v_in,$v_ou $f_in,$fO $Yb,$Ye,$dY $Y 0 #--- Field extraction |
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| 124 | rename_dims $fO $coords #--- Rename dims/atts |
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| 125 | fi |
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| 126 | if [ $Zonal = 'y' ]; then #--- Zonal mean |
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| 127 | fZ=$(Y=$Y; res=${res2D}; eval echo ${f_ou}) #--- Zonal File name |
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| 128 | if [[ ! -f $fZ || $recomp = 'y' ]]; then zonal_mean $fO $fZ; fi |
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| 129 | fi |
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| 130 | progress_bar $((Y-Yb+1)) $((Ye-Yb+1)) 50 #--- Check progress |
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| 131 | #============================================================================ |
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| 132 | done |
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| 133 | #============================================================================ |
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| 134 | for per in ${CLIMDATES[$i]}; do #--- Loop on periods |
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| 135 | #============================================================================ |
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| 136 | Yb=${per%%-*}; Ye=${per##*-}; Yc=${Yb}_${Ye}_clim; c='n'; cli0=${cli[$is]} |
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| 137 | |
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| 138 | #=== Is there a single file climatology available ? |
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| 139 | fc0=$(var=$v_in; Yb=$Yb; Ye=$Yb; datatype=$dt; eval echo $DATAIN/${cli0}) |
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| 140 | if [[ ${cli0} != "/" && -f $fc0 ]]; then c='y'; Yc=${Yb}_${Yb}_clim; fi |
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| 141 | |
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| 142 | fO=$(Y=\$Y; res=${res3D}; eval echo ${f_ou}) #--- Original resolution |
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| 143 | fOc=$(Y=$Yc; res=${res3D}; eval echo ${f_ou}) #--- ", target climatology |
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| 144 | if [[ ! -f $fOc || $recomp = 'y' ]]; then |
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| 145 | if [ "$c" = "y" ]; then |
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| 146 | echo ">> BUILDING $v_ou CLIMATOLOGY USING SPECIAL FILE ${fC0##*/} ($version)..." |
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| 147 | cp $fc0 $fOc ; rename_dims $fOc $coords #--- Rename dims/atts |
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| 148 | else |
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| 149 | echo ">> BUILDING $v_ou CLIMATOLOGY USING YEARLY FILES FOR $per ($version)..." |
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| 150 | make_clim ${v_ou} $fO $per 0 #--- Compute climatology |
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| 151 | fi |
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| 152 | fi |
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| 153 | if [ $Zonal = 'y' ]; then |
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| 154 | fZc=$(Y=$Yc; res=${res2D}; eval echo ${f_ou}) #--- Zonal File name |
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| 155 | if [[ ! -f $fZc || $recomp = 'y' ]]; then zonal_mean $fOc $fZc; fi |
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| 156 | fi |
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| 157 | done |
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| 158 | #============================================================================ |
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| 159 | done |
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| 160 | #============================================================================== |
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| 161 | done |
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| 162 | #================================================================================ |
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| 163 | done |
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| 164 | #================================================================================== |
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| 165 | |
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| 166 | |
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