1 | #!/bin/bash |
---|
2 | module load nco/4.6.9 |
---|
3 | |
---|
4 | #=== Indices of chosen datasets among available collection (see DATANAMES after) |
---|
5 | DOPROCESS=('n' 'y') #--- PROCESSED DATA TYPES (SSTandSeaIce, ozone) |
---|
6 | IXPROCESS=("0" "5 6 7") #--- PROCESSED DATASETS INDICES |
---|
7 | recomp='n' #--- RECOMPUTE FILES THAT ARE ALREADY PRESENT (y/n) |
---|
8 | |
---|
9 | #=============================================================================== |
---|
10 | #=== DETERMINE THE MACHINE NAME ================================================ |
---|
11 | #=============================================================================== |
---|
12 | if [ ${HOSTNAME:0:3} = 'ada' ]; then machine='ada'; work=$WORKDIR |
---|
13 | elif [ ${HOSTNAME:0:5} = 'curie' ]; then machine='curie'; work=$CCCWORKDIR |
---|
14 | elif [ ${HOSTNAME:0:6} = 'ciclad' ]; then machine='ciclad'; work=/home/$USER/tmp |
---|
15 | else echo "Not set up for this machine yet, sorry."; exit; fi |
---|
16 | export machine=$machine |
---|
17 | |
---|
18 | #=============================================================================== |
---|
19 | #=== PARAMETERS NOT SUPPOSED TO BE CHANGED OFTEN =============================== |
---|
20 | #=============================================================================== |
---|
21 | case $machine in |
---|
22 | ada) work=$WORKDIR |
---|
23 | DATAIN="" |
---|
24 | DATAOU='/workgpfs/rech/psl/rpsl035/IGCM/ATM' ;; |
---|
25 | curie) work=$WORKDIR |
---|
26 | DATAIN="" |
---|
27 | DATAOU='/ccc/work/cont003/igcmg/igcmg/IGCM/ATM' ;; |
---|
28 | ciclad) work=/data/$USER |
---|
29 | DATAIN='/prodigfs/project' |
---|
30 | DATAOU='/prodigfs/ipslfs/igcmg/IGCM/ATM' ;; |
---|
31 | esac |
---|
32 | if [ "$DATAIN" = "" ]; then echo "Raw data folder for $machine has to be specified."; exit; fi |
---|
33 | # DATAOU=/data/dcugnet$DATAOU # No write acces to $DATAOU => temporary storage space. |
---|
34 | |
---|
35 | #--- DATA TO TREAT (INTERANNUAL AND CLIMATOLOGIES): "SSTsAndSeaIce" "ozone": |
---|
36 | DATATYPES=('SSTsAndSeaIce' 'ozone') |
---|
37 | f='${var}_${datasets}_${datatype}_${project}_${dataset}_${grid}_${Yb}01-${Ye}??.nc' |
---|
38 | FILES_IN=("input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-0/ocean/mon/\${var}/gn/v20160609/$f \ |
---|
39 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-1/ocean/mon/\${var}/gn/v20161020/$f \ |
---|
40 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-2/ocean/mon/\${var}/gn/v20170419/$f \ |
---|
41 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-3/ocean/mon/\${var}/gn/v20171031/$f \ |
---|
42 | input4MIPs/CMIP6/CMIP/PCMDI/PCMDI-AMIP-1-1-4/ocean/mon/\${var}/gn/v20180427/$f" \ |
---|
43 | "input4MIPs/CMIP6/CMIP/UReading/UReading-CCMI-1-0/atmos/mon/\${var}/gn/v20160711/$f \ |
---|
44 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-stratO3-1-0/atmos/mon/\${var}/gn/v20170814/$f \ |
---|
45 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-nat-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
---|
46 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-sol-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
---|
47 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-volc-1-0/atmos/mon/\${var}/gn/v20180503/$f \ |
---|
48 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-sol-1-1/atmos/mon/\${var}/gn/v20180525/$f \ |
---|
49 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-nat-1-1/atmos/mon/\${var}/gn/v20180525/$f \ |
---|
50 | input4MIPs/CMIP6/DAMIP/CCCma/CCMI-hist-volc-1-1/atmos/mon/\${var}/gn/v20180525/$f") |
---|
51 | CLIMS_IN=("/ / / / /" \ |
---|
52 | "input4MIPs/CMIP6/CMIP/UReading/UReading-CCMI-1-0/atmos/monC/\${var}/gn/v20160830/$f / / / /") |
---|
53 | VARNAM_IN=('tosbcs siconcbcs' 'vmro3') |
---|
54 | DIRSTRUCT='datasets/exercise/project/origin/dataset/domain/frequency/var/grid/version/' |
---|
55 | DATADATES=() #--- DETERMINED LATER |
---|
56 | |
---|
57 | #--- RESULTS STORAGE |
---|
58 | if [ ! -d $DATAOU ]; then mkdir -p $DATAOU; fi |
---|
59 | FILES_OU=('LIMIT/AMIP.${version}/original/amipbcs_${var}_360x180_${Y}.nc' \ |
---|
60 | 'OZONE/${origin}/${dataset}.${version}/original/${var}_${Y}.nc') |
---|
61 | # SSTsAndSeaIce: ozone: |
---|
62 | VARNAM_OU=('tosbcs sicbcs' 'tro3') #--- VARIABLES NAMES IN FILES |
---|
63 | VARNAMFOU=('sst sic' 'tro3') #--- VARIABLES NAMES FOR FILES NAMES |
---|
64 | CLIMDATES=('1870-1899 1979-2008' '1850-1879 1979-2008') |
---|
65 | coords="X:longitude Y:latitude Z:plev" #--- COORDINATES NAMES KNOWN BY ce0l |
---|
66 | |
---|
67 | #=== EXCEPTIONS FOR STORAGE TREE ERRORS: variables not deduced from folder name parsing |
---|
68 | ex="PCMDI-AMIP-1-1-0:grid=gs1x1" # <dset>:<var>=<val> if dataset=dset: export var=val |
---|
69 | |
---|
70 | #================================================================================== |
---|
71 | #=== FEW FUNCTIONS (not specific to this script) |
---|
72 | #================================================================================== |
---|
73 | source tools.bash |
---|
74 | |
---|
75 | #=== DETERMINE TIME INTERVALS AND DISPLAY WHAT DATASET ARE ABOUT TO BE TREATED |
---|
76 | for i in $(eval echo {0..$((${#DATATYPES[@]}-1))}); do |
---|
77 | fin=${FILES_IN[$i]}; dt=${DATATYPES[$i]}; var=${VARNAM_IN[$i]%% *} |
---|
78 | DATADATES[$i]=$(get_date $var $dt $DATAIN $DIRSTRUCT $fin $ex) |
---|
79 | date=(${DATADATES[$i]}); fin=($fin); if [ ${DOPROCESS[$i]} != 'y' ]; then continue; fi |
---|
80 | echo ">> Chosen $dt:" |
---|
81 | for ka in ${IXPROCESS[$i]}; do echo " * ${fin[$ka]%/*} (${date[$ka]%-*})"; done |
---|
82 | done |
---|
83 | |
---|
84 | #================================================================================== |
---|
85 | for i in $(eval echo {0..$((${#DATATYPES[@]}-1))}); do #=== LOOP ON DATASETS |
---|
86 | #================================================================================== |
---|
87 | if [ ${DOPROCESS[$i]} != 'y' ]; then continue; fi |
---|
88 | dt=${DATATYPES[$i]} #=== SSTAndSeaIce, ozone... |
---|
89 | fin=(${FILES_IN[$i]}); vin=(${VARNAM_IN[$i]}) #=== INPUT FILE/VAR NAMES (each version) |
---|
90 | fou=${FILES_OU[$i]} ; vou=(${VARNAM_OU[$i]}) #=== OUTPUT FILE/VAR NAMES (single pair) |
---|
91 | date=(${DATADATES[$i]}) #=== ${Yb}-${Ye}-${dY} |
---|
92 | vfo=(${VARNAMFOU[$i]}) #=== VARNAME, FOR FILE NAMING |
---|
93 | cli=(${CLIMS_IN[$i]}) #=== SINGLE FILE CLIMATO |
---|
94 | #================================================================================ |
---|
95 | for is in ${IXPROCESS[$i]}; do #=== LOOP ON VERSIONS |
---|
96 | #================================================================================ |
---|
97 | parse_dir ${fin[$is]} $DIRSTRUCT $ex #--- Parse input directory |
---|
98 | dso=$dataset #--- For naming purpose |
---|
99 | case $dt in #--- NAMING EXCEPTIONS |
---|
100 | ozone) dso=${dso#*hist-}; dso=hist-${dso%%-*} |
---|
101 | if [ "$dataset" = "UReading-CCMI-1-0" ]; then dso="historical"; fi ;; |
---|
102 | SSTAndSeaIce) if [ "$dataset" = "PCMDI-AMIP-1-1-0" ]; then dso='AMIP'; fi ;; |
---|
103 | esac |
---|
104 | #============================================================================== |
---|
105 | for iv in $(eval echo {0..$((${#vin[@]}-1))}); do #--- Loop on variables |
---|
106 | #============================================================================== |
---|
107 | da=${date[$is]}; Yb=${da%%-*}; Ye=${da#*-}; dY=${Ye##*-}; Ye=${Ye%-*} |
---|
108 | v_in=${vin[$iv]}; v_ou=${vou[$iv]} #--- Variables names |
---|
109 | f_in=$(var=$v_in; Yb=\${Yb}; Ye=\${Ye}; datatype=$dt; eval echo $DATAIN/${fin[$is]}) |
---|
110 | axis=$(get_grid $(Yb=$Yb; Ye=????; eval echo $f_in) $v_in) |
---|
111 | res=${axis#*=}; axis=${axis%=*} |
---|
112 | Zonal='n'; if [ $axis = 'XYZT' ]; then Zonal='y'; fi #--- Zonal mean ? For 3D files |
---|
113 | f_ou=$(var=${vfo[$iv]}; Y=\${Y}; dataset=$dso; eval echo $DATAOU/${fou}) |
---|
114 | if [ $Zonal = 'y' ]; then #--- 2 directories for 3D files |
---|
115 | res3D=${res%x*}; res2D=${res3D#*x}_zonal; f_ou=${f_ou%/*}/\${res}/${f_ou##*/} |
---|
116 | fi |
---|
117 | echo ">> BUILDING 12 MONTHS ${v_in} FILES FOR THE $Yb-$Ye PERIOD USING $dataset DATASET ($version)..." |
---|
118 | #============================================================================ |
---|
119 | for Y in $(eval echo {$Yb..$Ye}); do #--- Loop on years |
---|
120 | #============================================================================ |
---|
121 | fO=$(Y=$Y; res=${res3D}; eval echo ${f_ou}) #--- Original resolution |
---|
122 | if [[ ! -f $fO || $recomp = 'y' ]]; then |
---|
123 | extract $v_in,$v_ou $f_in,$fO $Yb,$Ye,$dY $Y 0 #--- Field extraction |
---|
124 | rename_dims $fO $coords #--- Rename dims/atts |
---|
125 | fi |
---|
126 | if [ $Zonal = 'y' ]; then #--- Zonal mean |
---|
127 | fZ=$(Y=$Y; res=${res2D}; eval echo ${f_ou}) #--- Zonal File name |
---|
128 | if [[ ! -f $fZ || $recomp = 'y' ]]; then zonal_mean $fO $fZ; fi |
---|
129 | fi |
---|
130 | progress_bar $((Y-Yb+1)) $((Ye-Yb+1)) 50 #--- Check progress |
---|
131 | #============================================================================ |
---|
132 | done |
---|
133 | #============================================================================ |
---|
134 | for per in ${CLIMDATES[$i]}; do #--- Loop on periods |
---|
135 | #============================================================================ |
---|
136 | Yb=${per%%-*}; Ye=${per##*-}; Yc=${Yb}_${Ye}_clim; c='n'; cli0=${cli[$is]} |
---|
137 | |
---|
138 | #=== Is there a single file climatology available ? |
---|
139 | fc0=$(var=$v_in; Yb=$Yb; Ye=$Yb; datatype=$dt; eval echo $DATAIN/${cli0}) |
---|
140 | if [[ ${cli0} != "/" && -f $fc0 ]]; then c='y'; Yc=${Yb}_${Yb}_clim; fi |
---|
141 | |
---|
142 | fO=$(Y=\$Y; res=${res3D}; eval echo ${f_ou}) #--- Original resolution |
---|
143 | fOc=$(Y=$Yc; res=${res3D}; eval echo ${f_ou}) #--- ", target climatology |
---|
144 | if [[ ! -f $fOc || $recomp = 'y' ]]; then |
---|
145 | if [ "$c" = "y" ]; then |
---|
146 | echo ">> BUILDING $v_ou CLIMATOLOGY USING SPECIAL FILE ${fC0##*/} ($version)..." |
---|
147 | cp $fc0 $fOc ; rename_dims $fOc $coords #--- Rename dims/atts |
---|
148 | else |
---|
149 | echo ">> BUILDING $v_ou CLIMATOLOGY USING YEARLY FILES FOR $per ($version)..." |
---|
150 | make_clim ${v_ou} $fO $per 0 #--- Compute climatology |
---|
151 | fi |
---|
152 | fi |
---|
153 | if [ $Zonal = 'y' ]; then |
---|
154 | fZc=$(Y=$Yc; res=${res2D}; eval echo ${f_ou}) #--- Zonal File name |
---|
155 | if [[ ! -f $fZc || $recomp = 'y' ]]; then zonal_mean $fOc $fZc; fi |
---|
156 | fi |
---|
157 | done |
---|
158 | #============================================================================ |
---|
159 | done |
---|
160 | #============================================================================== |
---|
161 | done |
---|
162 | #================================================================================ |
---|
163 | done |
---|
164 | #================================================================================== |
---|
165 | |
---|
166 | |
---|