1 | #-Q- curie ###################### |
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2 | #-Q- curie ## CURIE TGCC/CEA ## |
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3 | #-Q- curie ###################### |
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4 | #-Q- curie #MSUB -r REBUILDWRK # Nom du job |
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5 | #-Q- curie #MSUB -o REBUILDWRK.out_%I |
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6 | #-Q- curie #MSUB -e REBUILDWRK.out_%I |
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7 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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8 | #-Q- curie #MSUB -T 36000 # Limite de temps elapsed du job |
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9 | #-Q- curie #MSUB -q standard # xlarge:fat nodes standard:thin nodes |
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10 | #-Q- curie #MSUB -x # exclusive node (needed to use high speed disk below) |
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11 | #-Q- curie #MSUB -Q normal |
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12 | #-Q- curie #MSUB -A ::default_project:: |
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13 | #-Q- curie RUN_DIR_PATH=/tmp/REBUILD_DIR_MR_$$ # RAM high speed disk partition ; 250GB/node. Along with -q standard |
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14 | #-Q- curie #RUN_DIR_PATH=/dev/shm/REBUILD_DIR_MR_$$ # SSD high speed disk partition ; 64GB/node. Along with -q xlarge |
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15 | #-Q- curie set +x |
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16 | #-Q- irene ###################### |
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17 | #-Q- irene ## IRENE TGCC/CEA ## |
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18 | #-Q- irene ###################### |
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19 | #-Q- irene #MSUB -r REBUILDWRK # Job name |
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20 | #-Q- irene #MSUB -o REBUILDWRK.out_%I |
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21 | #-Q- irene #MSUB -e REBUILDWRK.out_%I |
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22 | #-Q- irene #MSUB -n 1 |
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23 | #-Q- irene #MSUB -T 36000 # Maximum elapsed time |
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24 | #-Q- irene #MSUB -q ::default_node:: |
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25 | #-Q- irene #MSUB -c ::default_core:: |
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26 | #-Q- irene #MSUB -Q normal |
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27 | #-Q- irene #MSUB -A ::default_post_project:: |
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28 | #-Q- irene #MSUB -m store,work,scratch |
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29 | #-Q- irene set +x |
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30 | #-Q- irene-amd ###################### |
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31 | #-Q- irene-amd ## IRENE TGCC/CEA ## |
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32 | #-Q- irene-amd ###################### |
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33 | #-Q- irene-amd #MSUB -r REBUILDWRK # Job name |
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34 | #-Q- irene-amd #MSUB -o REBUILDWRK.out_%I |
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35 | #-Q- irene-amd #MSUB -e REBUILDWRK.out_%I |
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36 | #-Q- irene-amd #MSUB -n 1 |
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37 | #-Q- irene-amd #MSUB -T 36000 # Maximum elapsed time |
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38 | #-Q- irene-amd #MSUB -q ::default_node:: |
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39 | #-Q- irene-amd #MSUB -c ::default_core:: |
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40 | #-Q- irene-amd #MSUB -Q normal |
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41 | #-Q- irene-amd #MSUB -A ::default_post_project:: |
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42 | #-Q- irene-amd #MSUB -m store,work,scratch |
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43 | #-Q- irene-amd set +x |
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44 | #-Q- ada #!/bin/ksh |
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45 | #-Q- ada ####################### |
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46 | #-Q- ada ## ADA IDRIS ## |
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47 | #-Q- ada ####################### |
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48 | #-Q- ada # @ job_type = mpich |
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49 | #-Q- ada # @ requirements = (Feature == "prepost") |
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50 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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51 | #-Q- ada # @ wall_clock_limit = 10:00:00 |
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52 | #-Q- ada # Nom du travail LoadLeveler |
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53 | #-Q- ada # @ job_name = REBUILDWRK |
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54 | #-Q- ada # Fichier de sortie standard du travail |
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55 | #-Q- ada # @ output = $(job_name).$(jobid) |
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56 | #-Q- ada # Fichier de sortie d'erreur du travail |
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57 | #-Q- ada # @ error = $(job_name).$(jobid) |
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58 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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59 | #-Q- ada # @ notification = error |
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60 | #-Q- ada # @ environment = $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $POST_DIR ; $Script_Post_Output ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER ; wall_clock_limit=$(wall_clock_limit) |
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61 | #-Q- ada # @ queue |
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62 | #-Q- lxiv8 ###################### |
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63 | #-Q- lxiv8 ## OBELIX LSCE ## |
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64 | #-Q- lxiv8 ###################### |
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65 | #-Q- lxiv8 #PBS -N REBUILDWRK |
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66 | #-Q- lxiv8 #PBS -m a |
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67 | #-Q- lxiv8 #PBS -j oe |
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68 | #-Q- lxiv8 #PBS -q medium |
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69 | #-Q- lxiv8 #PBS -o REBUILDWRK.$$ |
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70 | #-Q- lxiv8 #PBS -S /bin/ksh |
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71 | #-Q- ifort_CICLAD ###################### |
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72 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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73 | #-Q- ifort_CICLAD ###################### |
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74 | #-Q- ifort_CICLAD #PBS -N REBUILDWRK |
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75 | #-Q- ifort_CICLAD #PBS -m a |
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76 | #-Q- ifort_CICLAD #PBS -j oe |
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77 | #-Q- ifort_CICLAD #PBS -q std |
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78 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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79 | #-Q- default #!/bin/ksh |
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80 | #-Q- default ################## |
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81 | #-Q- default ## DEFAULT HOST ## |
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82 | #-Q- default ################## |
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83 | |
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84 | #************************************************************** |
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85 | # Author: Sebastien Denvil |
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86 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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87 | # $Revision:: 1525 $ Revision of last commit |
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88 | # $Author:: cetlod $ Author of last commit |
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89 | # $Date:: 2020-04-27 10:39:22 +0200 (Mon, 27 Apr 2020) $ Date of last commit |
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90 | # IPSL (2006) |
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91 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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92 | # |
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93 | #************************************************************** |
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94 | |
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95 | #set -eu |
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96 | #set -vx |
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97 | |
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98 | date |
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99 | |
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100 | #-Q- ada export OMP_NUM_THREADS=1 |
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101 | |
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102 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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103 | TaskType=post-processing |
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104 | |
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105 | ######################################################################## |
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106 | |
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107 | #D- Flag to determine if this job in a standalone mode |
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108 | #D- Default : value from AA_job if any |
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109 | StandAlone=${StandAlone:=true} |
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110 | |
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111 | #D- Path to libIGCM |
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112 | #D- Default : value from AA_job if any |
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113 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
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114 | # WARNING you must check MirrorlibIGCM variable in sys library. |
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115 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
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116 | # WARNING of your running libIGCM directory. |
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117 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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118 | |
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119 | #-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer. |
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120 | MASTER=${MASTER:=ada|curie} |
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121 | |
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122 | #D- Directory where files we need to rebuild are store |
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123 | #D- Default : value from AA_job if any |
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124 | #D- REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/ |
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125 | #D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW |
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126 | REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES} |
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127 | |
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128 | #D- How many directory to rebuild we have to consider |
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129 | #D- Default : value from AA_job if any |
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130 | NbRebuildDir=${NbRebuildDir:=1000} |
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131 | |
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132 | #D- Suffix date we will use to determine which directory to rebuild |
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133 | #D- We will rebuild NbRebuildDir before and including PeriodDateBegin |
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134 | #D- Default : value from AA_job if any |
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135 | LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}} |
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136 | |
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137 | #D- Flag to determine atlas job's output directory |
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138 | #D- Default : value from libIGCM_post.ksh if any |
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139 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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140 | |
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141 | #-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK. |
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142 | libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM} |
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143 | |
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144 | #D- Increased verbosity (1, 2, 3) |
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145 | #D- Default : value from AA_job if any |
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146 | Verbosity=${Verbosity:=3} |
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147 | |
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148 | #D- Low level debug : to bypass lib test checks and stack construction |
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149 | #D- Default : value from AA_job if any |
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150 | DEBUG_debug=${DEBUG_debug:=false} |
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151 | |
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152 | #D- TEMPORARY Flag to determine atmospheric resolution |
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153 | #D- Default : value from atmospheric driver if any |
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154 | RESOL_ATM=${RESOL_ATM:=ALL} |
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155 | |
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156 | #D- TEMPORARY Flag to determine ocean resolution |
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157 | #D- Default : value from ocean driver if any |
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158 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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159 | |
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160 | #D- TEMPORARY Flag to determine ice resolution |
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161 | #D- Default : value from ice driver if any |
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162 | RESOL_ICE=${RESOL_OCE:=ORCA2} |
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163 | |
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164 | #D- TEMPORARY Flag to determine biogeochemistry resolution |
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165 | #D- Default : value from ice driver if any |
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166 | RESOL_MBG=${RESOL_OCE:=ORCA2} |
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167 | |
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168 | #D- Flag to determine surface resolution |
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169 | #D- Default : value from surface driver if any |
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170 | RESOL_SRF=ALL |
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171 | |
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172 | #D- Flag to determine surface resolution |
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173 | #D- Default : value from surface driver if any |
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174 | RESOL_SBG=ALL |
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175 | |
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176 | ######################################################################## |
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177 | |
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178 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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179 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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180 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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181 | #------- |
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182 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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183 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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184 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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185 | #------- |
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186 | RUN_DIR=${RUN_DIR_PATH} |
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187 | IGCM_sys_MkdirWork ${RUN_DIR} |
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188 | IGCM_sys_Cd ${RUN_DIR} |
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189 | #------- |
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190 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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191 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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192 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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193 | |
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194 | ######################################################################## |
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195 | |
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196 | #set -vx |
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197 | |
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198 | # ------------------------------------------------------------------ |
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199 | # Test if all was right before proceeding further |
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200 | # ------------------------------------------------------------------ |
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201 | IGCM_debug_Verif_Exit |
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202 | |
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203 | if [ ${StandAlone} = true ] ; then |
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204 | CARD_DIR=${SUBMIT_DIR} |
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205 | else |
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206 | CARD_DIR=${RUN_DIR} |
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207 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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208 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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209 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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210 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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211 | fi |
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212 | |
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213 | #================================== |
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214 | # First of all |
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215 | # |
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216 | # Read libIGCM compatibility version in config.card |
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217 | # Read UserChoices section |
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218 | # Read Ensemble section |
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219 | # Read Post section |
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220 | # Define all netcdf output directories |
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221 | #================================== |
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222 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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223 | |
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224 | # ------------------------------------------------------------------ |
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225 | # Activate BigBrother so as to supervise this job |
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226 | # ------------------------------------------------------------------ |
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227 | IGCM_debug_BigBro_Initialize |
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228 | |
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229 | # Directory list to work with |
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230 | ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) |
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231 | |
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232 | for directory in ${ListAllRebuildDir} ; do |
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233 | # |
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234 | IGCM_sys_Get_Master ${directory} ${RUN_DIR} |
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235 | # |
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236 | IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} ) |
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237 | |
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238 | # -------------------------------------------------------------------- |
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239 | # Source function include in the REBUILD ksh and rebuild |
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240 | # -------------------------------------------------------------------- |
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241 | . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh |
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242 | IGCM_FlushRebuild |
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243 | # |
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244 | IGCM_sys_Cd ${RUN_DIR} |
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245 | # Clean Up |
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246 | # local clean up |
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247 | IGCM_sys_Rm -rf $( basename ${directory} ) |
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248 | # remote clean up |
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249 | IGCM_sys_RshMaster rm -rf ${directory} |
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250 | done |
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251 | |
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252 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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253 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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254 | |
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255 | # ------------------------------------------------------------------ |
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256 | # Finalize BigBrother to inform that the jobs end |
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257 | # ------------------------------------------------------------------ |
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258 | IGCM_debug_BigBro_Finalize |
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259 | |
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260 | date |
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