source: CONFIG/UNIFORM/v7/IPSLCM7/compile_ipslcm7.sh @ 6834

Last change on this file since 6834 was 6828, checked in by jgipsl, 8 weeks ago

Check if LMDZ/libo exists before compression. Needed when compiling ORCHIDEE offline only.
  • Property svn:executable set to *
File size: 31.3 KB
Line 
1#!/bin/bash
2# Default options
3#
4#
5#
6date
7#### 1  Set up the compiling options
8#### Define some directories
9submitdir=$( pwd )
10modipsl=$submitdir/../..
11arch_path=$submitdir/ARCH
12mysrc_path=$submitdir/SOURCES
13export ROOT=$modipsl/modeles/IOIPSL
14#### Set default options
15# Activate compilation of LMDZ for regular latlon grid without DYNAMICO
16regular_latlon=y
17# Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=y
18resol_atm=144x142x79
19# Coupled with ocean biogeochemistry (y/n)
20nemotop=y
21# Optimization mode
22# optmode=prod/dev/debug
23optmode=prod
24# fcm_arch
25fcm_arch=default
26# Default values to be overritten
27parallel=mpi_omp
28export fcm_arch parallel xios
29full_flag=""
30full_nemo=n
31full_inca=""
32full_xios=""
33full_lmdz=""
34full_orch=""
35full_dyna=""
36full_oasis=n
37# choose radiative code compilation option
38rad=rrtm
39opt_rad=""
40#choose chemistry inca configuration
41optchimie=GES
42
43# subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled.
44subconfig=default
45
46# orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_4 is compiled. This is used as argument and also in the suffix of the executables.
47orchversion=orch22
48# orchdriver : Permet to compile the ORCHIDEE offline drivers. This option is activated by setting -orchdriver as argument.
49# Drivers are now compiled by default
50orchdriver="-driver"
51
52# Default netcdf_lib is used for XIOS but can be change by argument
53netcdf_lib=""
54
55## Arguments in order to compress temporary files after compilation
56tar=no
57comp_tar=yes
58
59# Output text file for compilation of each component
60datestr=`LC_ALL=C date +"%Y%m%dT%H%M"`
61outfile=$submitdir/out_compile_ipslcm7.$datestr
62echo > $outfile
63echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo
64
65
66rm -f out_compile_ipslcm7
67ln -s ${outfile} out_compile_ipslcm7
68
69
70#### Read arguments
71# Loop over all arguments to modify default set up
72while (($# > 0)) ; do
73    case $1 in
74        "-h"|"-help") cat <<end_help
75########################################################################
76# Usage of the script compile_ipslcm7.sh
77#
78########################################################################
79
80./compile_ipslcm7.sh [Options]
81
82Description of all options:
83
84[-full] Full recompilation of all components. This option can be added to all other options.
85[-cleannemo] Full recompilation of NEMO component only.
86[-regular_latlon yes/no] Activate or deactivate compilation of LMDZ dynamics for regular latlon grid.
87                         Default resol_atm size is used. This option is set in addition to the compilation of the icosahedric grid.
88[-resol_atm XXXxYYYxZZ] Define which regular grid to compile. A default grid is set if this option is not used.
89[-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod.
90[-subconfig X] Set this option if you want to compile a sub-configuration. X can be one of following sub-configurations :
91               ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA, LMDZOR, IPSLCM-reg or IPSLCM
92               By default, all available components are compiled.
93[-orch4 / -orch22] Choice of ORCHIDEE version. The source code are found in modeles/ORCHIDEE_4 or modeles/ORCHIDEE_2_2
94                   and a link will be set to the choosen model version. Default version is currently ORCHIDEE_2_2 (-orch22).
95[-orchdriver]   Activate compilation of orchidee offline drivers
96[-tar]: option to compress XIOS repository that takes many inodes without compilation
97[-comp_tar]: option to compile and compress XIOS repository if compilation succed
98[-notar]: do not compress XIOS repository
99
100
101Example 1: Default compilation of IPSLCM7
102./compile_ipslcm7.sh
103
104Example 2: Default compilation in debug mode
105./compile_ipslcm7.sh -debug
106
107Example 3: Default compilation with full recompilation of all components. No clean is needed.
108./compile_ipslcm7.sh -full
109
110Example 4: Compilation in addition of LMDZ in regular lat-lon for a specific resolution :
111./compile_ipslcm7.sh -resol_atm 144x142x95
112
113Example 5: Compilation without regular grid (only icosaedric grid)
114./compile_ipslcm7.sh -regular_latlon no
115
116Example 5: Compilation of ORCHIDEE_4 version
117./compile_ipslcm7.sh -orch4
118
119Example 6: compilation of a specific chemistry for INCA (default is GES)
120./compile_ipslcm7.sh -chimie NMHC_AER_S
121
122Example 7: Compilation of sub-configuration LMDZOR :
123./compile_ipslcm7.sh -subconfig LMDZOR
124
125Example 5: Compile without compressing XIOS and LMDZ/libo in tar files
126./compile_ipslcm7.sh -notar
127
128end_help
129            exit;;
130
131        "-parallel")   parallel=$2 ; shift ; shift ;;
132        "-arch")       fcm_arch="$2" ; shift ; shift ;;
133        "-debug")      optmode=debug ; shift ;;
134        "-dev")        optmode=dev ; shift ;;
135        "-prod")       optmode=prod ; shift ;;
136        "-regular_latlon")  regular_latlon=$2 ; shift ; shift ;;
137        "-resol_atm")  regular_latlon=y ; resol_atm=$2 ; shift ; shift ;;
138        "-subconfig")  subconfig=$2 ; shift ; shift ;;
139        "-full")       full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_oasis=y ; full_inca="-clean" ; full_dyna="-full" ; shift ;;
140        "-full_xios")  full_xios="--full" ; shift ;;  # Note only full_xios is using double dash: --full
141        "-full_lmdz")  full_lmdz="-full"  ; shift ;;
142        "-full_orch")  full_orch="-full"  ; shift ;;
143        "-full_nemo")  full_nemo=y ; shift ;;
144        "-full_inca")  full_inca="-clean"; shift ;;
145        "-full_dyna")  full_dyna="-full" ; shift ;;
146        "-full_oasis") full_oasis=y ; shift ;;
147        "-cleannemo")  full_nemo=y ; shift ;;
148        "-rad")        rad=$2; shift ; shift ;;
149        "-orch22")     orchversion="orch22"; shift ;;
150        "-orch4")      orchversion="orch4";  shift ;;
151        "-orchdriver") orchdriver="-driver";  shift ;;
152        "-chimie")     optchimie=$2; shift ; shift;;
153        "-tar")             tar=yes ; shift ;;
154        "-comp_tar")        comp_tar=yes ; shift ;;
155        "-notar")           comp_tar=no ; shift ;;
156        *)             echo "unknown option "$1" , exiting..." ; exit
157    esac
158done
159
160
161# Define which sub-configuration to compile. By default all extracted source components are compiled.
162source define_config.sh
163
164echo "Following options are set in current compiling:" >> $outfile
165echo "   regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile 
166echo "   resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile 
167echo "   optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile 
168echo "   full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna, full_oasis=$full_oasis" >> $outfile 
169echo "   tar=$tar, comp_tar=$comp_tar" >> $outfile
170echo "   compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile
171echo >> $outfile
172### Verification of argument
173# Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface.
174if [ $orchversion == orch22 ] ; then
175    argorch=orchidee2.1
176elif [ $orchversion == orch4 ] ; then
177    argorch=orchideetrunk
178else
179    echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now"
180fi
181
182# Compress XIOS and LMDZ/libo without compiling if tar=yes
183if [ $tar == yes ] ; then
184    echo "Option tar activated to compress XIOS and LMDZ/libo. No compilation will be done."
185    echo >> $outfile
186    echo "Option tar activated to compress XIOS and LMDZ/libo. No compilation will be done." >> $outfile
187    if [[ -d $modipsl/modeles/XIOS ]] ; then
188        echo " Now tar XIOS repository"
189        echo " Now tar XIOS repository" >> $outfile
190        tar -cf $modipsl/modeles/XIOS.tar $modipsl/modeles/XIOS
191        rm -rf $modipsl/modeles/XIOS
192    else
193        echo " No XIOS repository to compress"
194        echo " No XIOS repository to compress" >> $outfile
195    fi
196
197    if [[ -d $modipsl/modeles/LMDZ/libo ]] ; then
198        echo "Now tar LMDZ/libo repository"
199        echo "Now tar LMDZ/libo repository" >> $outfile
200        tar -cf $modipsl/modeles/LMDZ/libo.tar $modipsl/modeles/LMDZ/libo
201        rm -rf $modipsl/modeles/LMDZ/libo
202    else
203        echo " No LMDZ/libo repository to compress"
204        echo " No LMDZ/libo repository to compress" >> $outfile
205    fi
206
207    echo "END OF SCRIPT"
208    echo "END OF SCRIPT" >> $outfile
209    exit
210fi
211
212### Read host dependent default values
213### These variables will not be changed if they were set as argument
214###./host.sh $host
215# Later : Following lines should be set in host.sh file
216# begin host.sh
217if [ $fcm_arch == default ] ; then
218    # Find out current host and source specific paths and commands for the host
219    case $( hostname -s ) in
220        jean-zay*)
221            if [[ $( hostname -s ) != *"pp"* ]] ; then
222                echo "Warning! You MUST compile on jean-zay-pp."
223                echo "EXIT"
224                exit
225            else
226                fcm_arch=X64_JEANZAY
227            fi ;;
228        irene170|irene171|irene190|irene191|irene192|irene193)
229            fcm_arch=X64_IRENE;;
230        irene172|irene173|irene194|irene195)
231            fcm_arch=X64_IRENE-AMD;;
232        asterix*|obelix*)
233            fcm_arch=ifort_LSCE
234            if [ "${parallel}" == "mpi_omp" ] ; then
235                echo "Warning!! Currently at Obelix hybrid mode is not possible."
236                echo "          Option -parallel mpi_omp is now changed to -parallel mpi"
237                echo ""
238                parallel=mpi
239            else
240                echo "You used -parallel" $parallel
241            fi ;;
242        spirit*)
243            fcm_arch=ifort_MESOIPSL;;
244        ciclad*|climserv*|loholt*|camelot*)
245            fcm_arch=ifort_CICLAD;;
246        *)
247            echo Current host is not known. You must use option -arch to specify which architecuture files to use.
248            echo Exit now.
249            exit
250    esac
251fi
252
253# Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch.
254# The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement.
255if [ -f ARCH/arch-${fcm_arch}.env ] ; then
256    echo >> $outfile
257    echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components."
258    echo "Note that this new environement might be kept after compilation."
259    echo "If this is the case, source again your personal environment after compilation."
260    echo " Personal module list before sourcing of ARCH/arch.env file:"    >> $outfile 
261    module list   >> $outfile 2>&1
262    svn_version=$(module -t list | grep subversion)
263       
264    # Make a link to this file, to be used also in config.card
265    rm -f ARCH/arch.env
266    ln -s arch-${fcm_arch}.env ARCH/arch.env
267
268    # Source the file
269    source ARCH/arch.env   >> $outfile 2>&1
270    if [ X$svn_version != X ] ; then
271        module load ${svn_version}
272    fi
273    echo >> $outfile
274    echo " New module list after sourcing of ARCH/arch.env file:"    >> $outfile 
275    module list   >> $outfile 2>&1
276fi
277
278
279#### Clean if full_orch
280# If full recompilation of ORCHIDEE then first clean modipsl/lib folder
281if [ X${full_orch} == X"-full" ] ; then
282   rm -f $modipsl/lib/*
283fi
284
285#### 2 Do the compilation
286## 2.1 Compile ioipsl
287cd $modipsl/modeles/IOIPSL
288echo; echo "NOW COMPILE IOIPSL"
289echo >> $outfile ; echo " NOW COMPILE IOIPSL"   >> $outfile 
290
291echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 
292     ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 2>&1
293# Test if compiling succeded
294if [[ $? != 0 ]] ; then
295    echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP"
296    exit
297fi
298
299if [ $compoasis == y ] ; then
300## 2.2 Compile oasis3-mct
301if [ $full_oasis == y ] ; then
302    rm -rf $modipsl/oasis3-mct/BLD
303fi
304cd $modipsl/oasis3-mct/util/make_dir
305echo; echo "NOW COMPILE OASIS3-MCT"
306echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT"   >> $outfile
307cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc
308
309echo make -f TopMakefileOasis3 >> $outfile
310     make -f TopMakefileOasis3 >> $outfile 2>&1
311if [[ $? != 0 ]] ; then
312    echo "THERE IS A PROBLEM IN OASIS COMPILATION - STOP"
313    exit
314fi
315 
316
317else
318echo ; echo No compilation of OASIS
319fi
320
321## 2.3 Compile xios
322echo; echo "NOW DECOMPRESS XIOS IF NEEDED"
323# First check if XIOS needs to be decompressed
324# In priority search for modeles/XIOS_${optmode}.tar but if it doesn't exist take
325# the first which is found.
326if [[ -d $modipsl/modeles/XIOS ]] ; then
327    echo "Found XIOS -> no decompress needs to be do";  >> $outfile
328elif [[ -f $modipsl/modeles/XIOS_${optmode}.tar ]]; then
329    echo >> $outfile
330    echo "Found XIOS_${optmode}.tar -> decompress repository" >> $outfile
331    # Do not write "tar -xf ... -C $modipsl/modeles because it's modeles/XIOS that is compressed, not only XIOS/
332    tar -xf $modipsl/modeles/XIOS_${optmode}.tar -C $modipsl/ >> $outfile 2>&1
333elif [[ -f $modipsl/modeles/XIOS_prod.tar ]]; then
334    echo >> $outfile
335    echo "Found XIOS_prod.tar -> decompress repository" >> $outfile
336    tar -xf $modipsl/modeles/XIOS_prod.tar -C $modipsl/ >> $outfile 2>&1
337elif [[ -f $modipsl/modeles/XIOS_debug.tar ]]; then
338    echo >> $outfile
339    echo "Found XIOS_debug.tar -> decompress repository" >> $outfile
340    tar -xf $modipsl/modeles/XIOS_debug.tar -C $modipsl/ >> $outfile 2>&1
341elif [[ -f $modipsl/modeles/XIOS_dev.tar ]]; then
342    echo >> $outfile
343    echo "Found XIOS_dev.tar -> decompress repository" >> $outfile
344    tar -xf $modipsl/modeles/XIOS_dev.tar -C $modipsl/ >> $outfile 2>&1
345elif [[ -f $modipsl/modeles/XIOS.tar ]]; then
346    echo >> $outfile
347    echo "Found XIOS.tar -> decompress repository" >> $outfile
348    tar -xf $modipsl/modeles/XIOS.tar -C $modipsl/ >> $outfile 2>&1
349else
350    echo "XIOS source code was not found. Exit"
351    echo "XIOS source code was not found. Exit" >> $outfile
352    exit
353fi
354
355cd $modipsl/modeles/XIOS
356echo; echo "NOW COMPILE XIOS"
357echo >> $outfile ; echo " NOW COMPILE XIOS"   >> $outfile 
358if [ $compoasis == y ] ; then
359argoasis="--use_oasis oasis3_mct "
360else
361argoasis=" "
362fi
363echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 
364     ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 2>&1
365# Test if compiling succeded
366if [[ $? != 0 ]] ; then
367    echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP"
368    exit
369fi
370# Move executables to modipsl/bin
371if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then
372    mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe
373else
374    echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP"
375    exit
376fi
377
378
379## 2.4 Compile ORCHIDEE
380# Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE.
381# This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie.
382cd $modipsl/modeles
383rm -f ORCHIDEE
384if [ $orchversion == orch22 ] ; then
385    ln -s ORCHIDEE_2_2 ORCHIDEE
386    cd $modipsl/modeles/ORCHIDEE_2_2
387    echo; echo "NOW COMPILE ORCHIDEE_2_2"
388    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2"   >> $outfile 
389else
390    ln -s ORCHIDEE_4 ORCHIDEE
391    cd $modipsl/modeles/ORCHIDEE_4
392    echo; echo "NOW COMPILE ORCHIDEE_4 (trunk)"
393    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_4 (trunk)"   >> $outfile 
394fi
395
396# Check if the compilation of ORCHIDEE was previsouly interupted prematured.
397# In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm
398# to ask question and wait for interactivly answer from the user.
399if [ -f build/fcm.bld.lock ] ; then
400    echo >> $outfile
401    echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. "   >> $outfile
402    echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
403    echo "           The file will now be removed. "   >> $outfile
404    echo >> $outfile
405    rm -f build/fcm.bld.lock
406fi
407
408if [ $compoasis == y ] ; then
409    # For this case, XIOS library needs to be linked with OASIS library
410    argoasis="-linkwithoasis"
411else
412    argoasis=""
413fi
414
415echo    ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path ${argoasis} $full_orch $orchdriver >> $outfile 
416        ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path ${argoasis} $full_orch $orchdriver >> $outfile 2>&1
417# Test if compiling finished
418if [[ $? != 0 ]] ; then
419    echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP"
420    exit
421fi
422
423# Rename exetubles for ORCHIDEE offline driver with suffix version
424cd $modipsl/bin
425if [ -f orchideedriver ] ; then
426    mv orchideedriver orchideedriver.${orchversion}_$optmode
427    ln -sf orchideedriver.${orchversion}_$optmode orchideedriver_$optmode
428fi
429if [ -f orchidee_ol ] ; then
430    mv orchidee_ol orchidee_ol.${orchversion}_$optmode
431    ln -sf orchidee_ol.${orchversion}_$optmode orchidee_ol_$optmode
432fi
433
434## 2.5 Compile NEMO
435if [ $compnemo == y ] ; then
436    nemo_root=$modipsl/modeles/NEMO
437    cfg_ref=ORCA2_ICE_PISCES
438    cfg_wrk=ORCA_ICE_TRC
439    addkeys="key_oasis3 key_top key_si3 key_isf"
440    delkeys=""
441   
442    if [ ${nemotop} == n ] ; then
443        cfg_wrk=ORCA_ICE
444        delkeys="key_top"
445    fi
446   
447    if [ ${nemotop} == n ] ; then
448        echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"
449        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"   >> $outfile
450    else
451        echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"
452        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"   >> $outfile
453    fi
454   
455    echo >> $outfile ; echo cd $nemo_root  >> $outfile
456    echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.   >> $outfile
457    echo >> $outfile
458   
459    cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.
460   
461    # creation of config
462    echo >> $outfile ; echo cd $nemo_root  >> $outfile
463    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys"  del_key "$delkeys"   >> $outfile
464    echo >> $outfile
465    cd $nemo_root
466    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0  add_key "$addkeys"  del_key "$delkeys"  >> $outfile 2>&1
467   
468   
469    # Copy of specfic source files
470    echo >> $outfile ; echo cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.   >> $outfile
471    echo >> $outfile
472    cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.
473   
474   
475    if [ $full_nemo == y ] ; then
476        # To make a full compilation, first make a clean to remove all files produced during previous compilation
477        echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean   >> $outfile
478        echo >> $outfile
479        ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean  >> $outfile 2>&1
480    fi
481    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile
482    echo >> $outfile
483    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile 2>&1
484   
485    echo >> $outfile
486    echo "Move nemo executable to modipsl/bin" >> $outfile
487    echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin   >> $outfile
488    ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin  >> $outfile
489    echo >> $outfile
490   
491    if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then
492        mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe
493    else
494        echo "ERROR nemo.exe executable does not exist."
495        echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP"
496        exit
497    fi
498   
499else
500    echo ; echo No compilation of NEMO
501fi
502
503##2.6  Compile INCA
504if [ $compinca == y ] ; then
505    cd $modipsl/modeles/INCA
506   
507    echo; echo "NOW COMPILE INCA ${optchimie}"
508    echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}"   >> $outfile 
509   
510    echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch}  -arch_path $arch_path $full_inca  >> $outfile
511    ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp  -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile 2>&1
512   
513    # Test if compiling finished
514    if [[ $? != 0 ]] ; then
515        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
516        echo "ALL INFORMATION IN FILE $outfile"
517        exit
518    fi
519   
520    echo "Move inca.dat modipsl/bin"
521    if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ;  then 
522        mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ;
523    else
524        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
525        echo "ALL INFORMATION IN FILE $outfile"
526        exit   
527    fi
528   
529    echo "Move tracer.def to  modipsl/bin"
530    if [[ -f $modipsl/modeles/INCA/tracer.def ]] ;  then
531        mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ;
532    fi
533   
534else
535    echo ; echo No compilation of INCA
536fi
537
538## 2.7 Compile LMDZ
539cd $modipsl/modeles/LMDZ
540
541# First check if LMDZ/libo exist or if it could be decompressed
542# If neither LMDZ/libo or LMDZ/libo_${optmode}.tar exists, nothing is done. It'll be created
543# during the compilation.
544echo; echo "NOW DECOMPRESS LMDZ/libo IF NEEDED"
545if [[ -d $modipsl/modeles/LMDZ/libo ]] ; then
546    echo "Found LMDZ/libo -> no decompress needs to be done"; >> $outfile
547elif [[ -f $modipsl/modeles/LMDZ/libo_${optmode}.tar ]]; then
548    echo "Found LMDZ/libo_${optmode}.tar -> decompress repository"; >> $outfile
549    echo >> $outfile
550    tar -xf $modipsl/modeles/LMDZ/libo_${optmode}.tar -C $modipsl/ >> $outfile 2>&1
551fi
552
553
554# Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7 for LMDZ 4876
555# To be removed for newer versions of LMDZ
556ln -sf $mysrc_path/LMDZ/phylmd/*.*90  libf/phylmd/.
557
558# Compile LMDZ as library to couple to DYNAMICO
559if [ $compdyna == y ] ; then
560    echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"
561    echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"   >> $outfile 
562   
563   
564    # Check if the compilation of LMDZ was previsouly interupted prematured.
565    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
566    # to ask question and wait for interactivly answer from the user.
567    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
568        echo >> $outfile
569        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
570        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
571        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
572        echo >> $outfile
573        rm -f libf/grid/dimensions.h
574        rm -f .lock
575    fi
576   
577    # Need to define the proper option for radiative code compilation. By default, we use rrtm
578    case $rad in
579        oldrad) opt_rad="" ;;
580        rrtm)    opt_rad="-rad rrtm" ;;
581        ecrad)  opt_rad="-rad ecrad" ;;
582        *) echo Only oldrad rrtm ecrad for rad option ; exit
583    esac
584   
585   
586    if [ $compinca == y ] ; then
587        arginca="-chimie INCA "
588    else
589        arginca=" "
590    fi
591   
592    if [ $compoasis == y ] ; then
593        argoasis="-c OMCT "
594    else
595        argoasis=" "
596    fi
597
598    echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 
599    ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 2>&1
600   
601   
602    # Test if compiling finished
603    if [[ $? != 0 ]] ; then
604        echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP"
605        exit
606    fi
607fi
608
609
610## 2.8 Compile DYNAMICO
611if [ $compdyna == y ] ; then
612    cd $modipsl/modeles/DYNAMICO
613    echo; echo "NOW COMPILE DYNAMICO "
614    echo >> $outfile ; echo " NOW COMPILE DYNAMICO"   >> $outfile 
615   
616    if [ $compoasis == y ] ; then
617        argoasis="-with_oasis "
618    else
619        argoasis=" "
620    fi
621    if [ $compinca == y ] ; then
622        arginca="-with_inca "
623    else
624        arginca=" "
625    fi
626   
627   
628    echo ./make_icosa -$optmode -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 
629    ./make_icosa -$optmode -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 2>&1
630    # Test if compiling finished
631    if [[ $? != 0 ]] ; then
632        echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP"
633        exit
634    fi
635fi
636   
637## 2.9 Compile interface ICOSA_LMDZ
638if [ $compdyna == y ] ; then
639    cd $modipsl/modeles/ICOSA_LMDZ
640    echo; echo "NOW COMPILE ICOSA_LMDZ "
641    echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ"   >> $outfile 
642   
643    echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 
644    ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 2>&1
645    # Test if compiling finished
646    if [[ $? != 0 ]] ; then
647        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP"
648        exit
649    fi
650    # Move executables to modipsl/bin
651    if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then
652        if [ $compinca == y ] ; then
653            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe
654            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
655            cd  $modipsl/bin
656            rm -f icosa_lmdz_${orchversion}_${optmode}.exe
657            ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe
658        else
659            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe
660        fi
661    else
662        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP"
663        exit
664    fi
665fi
666
667
668## 2.10 Compile LMDZ for regular latlon configuration
669if [ $regular_latlon = y ] && [ $complmdz = y ] ; then
670
671    cd $modipsl/modeles/LMDZ
672    # Compile LMDZ regular lat-lon exectuable
673    echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"
674    echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"   >> $outfile 
675    # Check if the compilation of LMDZ was previsouly interupted prematured.
676    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
677    # to ask question and wait for interactivly answer from the user.
678    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
679        echo >> $outfile
680        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
681        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
682        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
683        echo >> $outfile
684        rm -f libf/grid/dimensions.h
685        rm -f .lock
686    fi
687
688    # Need to define the proper option for radiative code compilation. By default, we use rrtm
689    case $rad in
690        oldrad) opt_rad="" ;;
691        rrtm)    opt_rad="-rad rrtm" ;;
692        ecrad)  opt_rad="-rad ecrad" ;;
693        *) echo Only oldrad rrtm ecrad for rad option ; exit
694    esac
695   
696    if [ $compinca == y ] ; then
697        arginca="-chimie INCA"
698    else
699        arginca=""
700    fi
701   
702    if [ $compoasis == y ] ; then
703        argoasis="-c OMCT"
704    else
705        argoasis=""
706    fi
707    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 
708         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 2>&1
709    # Test if compiling finished
710    if [[ $? != 0 ]] ; then
711        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
712        exit
713    fi
714
715    # Find executable suffix
716    suffix=_${resol_atm}_phylmd
717    suffix=${suffix}_${rad} 
718    if [ $parallel == seq ] || [ $parallel == none ] ; then
719        suffix=${suffix}_seq_orch_inca.e
720    else
721        if [ $compoasis == y ] ; then
722            suffix=${suffix}_para_mem_orch_couple
723        else
724            suffix=${suffix}_para_mem_orch
725        fi
726        if [ $compinca == y ] ; then
727            suffix=${suffix}_inca.e
728        else
729            suffix=${suffix}.e
730        fi
731    fi
732    echo gcm suffix = $suffix
733   
734    # Move executables to modipsl/bin folder
735    echo "Move gcm.e executable to modipsl/bin"
736    if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ;  then
737        if [ $compinca == y ] ; then
738            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e
739            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
740            cd $modipsl/bin
741            rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e
742            ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e
743        else
744            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e
745        fi
746    else
747        echo "ERROR gcm${suffix} executable does not exist." 
748        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
749        exit
750    fi   
751
752    # Find executable suffix
753    suffix=_${resol_atm}_phylmd
754    suffix=${suffix}_${rad} 
755    if [ $parallel == seq ] || [ $parallel == none ] ; then
756        suffix=${suffix}_seq_orch.e
757    else
758        if [ $compoasis == y ] ; then
759            suffix=${suffix}_para_mem_orch_couple.e
760        else
761            suffix=${suffix}_para_mem_orch.e
762        fi
763    fi
764    echo ce0l suffix = $suffix
765
766    # Compile ce0l initialization program for LMDZ regular lat-lon exectuable
767    cd $modipsl/modeles/LMDZ
768    echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"
769    echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"   >> $outfile 
770
771    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 
772         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 2>&1
773    # Test if compiling finished
774    if [[ $? != 0 ]] ; then
775        echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP"
776        exit
777    fi
778   
779 
780    # Move executable ce0l to modipsl/bin folder
781    echo "Move ce0l executable to modipsl/bin"
782    if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ;  then
783        mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e
784    else
785        echo "ERROR ce0l${suffix} executable does not exist." 
786        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
787        exit
788    fi
789fi
790
791# Compress XIOS and LMDZ/libo
792if [ $comp_tar == yes ] && [ -d $modipsl/modeles/XIOS ] ; then
793    echo "Option comp_tar activated, now compress XIOS"
794    echo "Option comp_tar activated, now compress XIOS" >> $outfile
795    tar -cf $modipsl/modeles/XIOS_${optmode}.tar $modipsl/modeles/XIOS
796    rm -rf $modipsl/modeles/XIOS
797fi
798if [ $comp_tar == yes ] && [ -d $modipsl/modeles/LMDZ/libo ] ; then
799    echo "Option comp_tar activated, now compress LMDZ/libo"
800    echo "Option comp_tar activated, now compress LMDZ/libo" >> $outfile
801    tar -cf $modipsl/modeles/LMDZ/libo_${optmode}.tar $modipsl/modeles/LMDZ/libo
802    rm -rf $modipsl/modeles/LMDZ/libo
803fi
804
805echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile
806echo ls -lrt modipsl/bin >> $outfile
807ls -lrt $modipsl/bin >> $outfile
808
809echo; echo "ALL COMPILING FINISHED" ; echo
810echo "Executables are found in modipsl/bin"
811echo "Check that executable names correspond with the name set in config.card before launching the job"
812echo ls -lrt modipsl/bin
813ls -lrt $modipsl/bin
814
815date
816
817exit
818
819
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