source: CONFIG/UNIFORM/v7/IPSLCM7/compile_ipslcm7.sh @ 6703

Last change on this file since 6703 was 6703, checked in by acosce, 6 months ago

fixed a bug in case we just compile lmdz in regular grid

  • Property svn:executable set to *
File size: 26.5 KB
Line 
1#!/bin/bash
2# Default options
3#
4#
5#
6date
7#### 1  Set up the compiling options
8#### Define some directories
9submitdir=$( pwd )
10modipsl=$submitdir/../..
11arch_path=$submitdir/ARCH
12mysrc_path=$submitdir/SOURCES
13export ROOT=$modipsl/modeles/DYNAMICO
14#### Set default options
15# Activate compilation of LMDZ for regular latlon grid without DYNAMICO
16regular_latlon=y
17# Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=y
18resol_atm=144x142x79
19# Coupled with ocean biogeochemistry (y/n)
20nemotop=y
21# Optimization mode
22# optmode=prod/dev/debug
23optmode=prod
24# fcm_arch
25fcm_arch=default
26# Default values to be overritten
27parallel=mpi_omp
28export fcm_arch parallel xios
29full_flag=""
30full_nemo=n
31full_inca=""
32full_xios=""
33full_lmdz=""
34full_orch=""
35full_dyna=""
36full_oasis=n
37# choose radiative code compilation option
38rad=rrtm
39opt_rad=""
40#choose chemistry inca configuration
41optchimie=GES
42
43# subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled.
44subconfig=default
45
46# orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_trunk is compiled. This is used as argument and also in the suffix of the executables.
47orchversion=orch22
48# orchdriver : Permet to compile the ORCHIDEE offline drivers. This option is activated by setting -orchdriver as argument.
49# By default, drivers are not compiled.
50orchdriver=""
51
52# Default netcdf_lib is used for XIOS but can be change by argument
53netcdf_lib=""
54
55# Output text file for compilation of each component
56datestr=`LC_ALL=C date +"%Y%m%dT%H%M"`
57outfile=$submitdir/out_compile_ipslcm7.$datestr
58echo > $outfile
59echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo
60
61
62rm -f out_compile_ipslcm7
63ln -s ${outfile} out_compile_ipslcm7
64
65
66#### Read arguments
67# Loop over all arguments to modify default set up
68while (($# > 0)) ; do
69    case $1 in
70        "-h"|"-help") cat <<end_help
71########################################################################
72# Usage of the script compile_ipslcm7.sh
73#
74########################################################################
75
76./compile_ipslcm7.sh [Options]
77
78Description of all options:
79
80[-full] Full recompilation of all components. This option can be added to all other options.
81[-cleannemo] Full recompilation of NEMO component only.
82[-regular_latlon yes/no] Activate or deactivate compilation of LMDZ dynamics for regular latlon grid.
83                         Default resol_atm size is used. This option is set in addition to the compilation of the icosahedric grid.
84[-resol_atm XXXxYYYxZZ] Define which regular grid to compile. A default grid is set if this option is not used.
85[-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod.
86[-subconfig X] Set this option if you want to compile a sub-configuration. X can be one of following sub-configurations :
87               ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA, LMDZOR, IPSLCM-reg or IPSLCM
88               By default, all available components are compiled.
89[-orch4 / -orch22] Choice of ORCHIDEE version. The source code are found in modeles/ORCHIDEE_trunk or modeles/ORCHIDEE_2_2
90                   and a link will be set to the choosen model version. Default version is currently ORCHIDEE_2_2 (-orch22).
91[-orchdriver]   Activate compilation of orchidee offline drivers
92
93Example 1: Default compilation of IPSLCM7
94./compile_ipslcm7.sh
95
96Example 2: Default compilation in debug mode
97./compile_ipslcm7.sh -debug
98
99Example 3: Default compilation with full recompilation of all components. No clean is needed.
100./compile_ipslcm7.sh -full
101
102Example 4: Compilation in addition of LMDZ in regular lat-lon for a specific resolution :
103./compile_ipslcm7.sh -resol_atm 144x142x95
104
105Example 5: Compilation without regular grid (only icosaedric grid)
106./compile_ipslcm7.sh -regular_latlon no
107
108Example 5: Compiltion of ORCHIDEE_trunk version
109./compile_ipslcm7.sh -orch4
110
111Example 6: compilation of a specific chemistry for INCA (default is GES)
112./compile_ipslcm7.sh -chimie NMHC_AER_S
113
114Example 7: Compilation of sub-configuration LMDZOR :
115./compile_ipslcm7.sh -subconfig LMDZOR
116
117end_help
118            exit;;
119
120        "-parallel")   parallel=$2 ; shift ; shift ;;
121        "-arch")       fcm_arch="$2" ; shift ; shift ;;
122        "-debug")      optmode=debug ; shift ;;
123        "-dev")        optmode=dev ; shift ;;
124        "-prod")       optmode=prod ; shift ;;
125        "-regular_latlon")  regular_latlon=$2 ; shift ; shift ;;
126        "-resol_atm")  regular_latlon=y ; resol_atm=$2 ; shift ; shift ;;
127        "-subconfig")  subconfig=$2 ; shift ; shift ;;
128        "-full")       full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_oasis=y ; full_inca="-clean" ; full_dyna="-full" ; shift ;;
129        "-full_xios")  full_xios="--full" ; shift ;;  # Note only full_xios is using double dash: --full
130        "-full_lmdz")  full_lmdz="-full"  ; shift ;;
131        "-full_orch")  full_orch="-full"  ; shift ;;
132        "-full_nemo")  full_nemo=y ; shift ;;
133        "-full_inca")  full_inca="-clean"; shift ;;
134        "-full_dyna")  full_dyna="-full" ; shift ;;
135        "-full_oasis") full_oasis=y ; shift ;;
136        "-cleannemo")  full_nemo=y ; shift ;;
137        "-rad")        rad=$2; shift ; shift ;;
138        "-orch22")     orchversion="orch22"; shift ;;
139        "-orch4")      orchversion="orch4";  shift ;;
140        "-orchdriver") orchdriver="-driver";  shift ;;
141        "-chimie")     optchimie=$2; shift ; shift;;
142        *)             echo "unknown option "$1" , exiting..." ; exit
143    esac
144done
145
146
147# Define which sub-configuration to compile. By default all extracted source components are compiled.
148source define_config.sh
149
150echo "Following options are set in current compiling:" >> $outfile
151echo "   regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile 
152echo "   resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile 
153echo "   optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile 
154echo "   full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna, full_oasis=$full_oasis" >> $outfile 
155echo "   compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile
156echo >> $outfile
157### Verification of argument
158# Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface.
159if [ $orchversion == orch22 ] ; then
160    argorch=orchidee2.1
161elif [ $orchversion == orch4 ] ; then
162    argorch=orchideetrunk
163else
164    echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now"
165fi
166
167### Read host dependent default values
168### These variables will not be changed if they were set as argument
169###./host.sh $host
170# Later : Following lines should be set in host.sh file
171# begin host.sh
172if [ $fcm_arch == default ] ; then
173    # Find out current host and source specific paths and commands for the host
174    case $( hostname -s ) in
175        jean-zay*)
176            if [[ $( hostname -s ) != *"pp"* ]] ; then
177                echo "Warning! You MUST compile on jean-zay-pp."
178                echo "EXIT"
179                exit
180            else
181                fcm_arch=X64_JEANZAY
182            fi ;;
183        irene170|irene171|irene190|irene191|irene192|irene193)
184            fcm_arch=X64_IRENE;;
185        irene172|irene173|irene194|irene195)
186            fcm_arch=X64_IRENE-AMD;;
187        asterix*|obelix*)
188            fcm_arch=ifort_LSCE
189            if [ "${parallel}" == "mpi_omp" ] ; then
190                echo "Warning!! Currently at Obelix hybrid mode is not possible."
191                echo "          Option -parallel mpi_omp is now changed to -parallel mpi"
192                echo ""
193                parallel=mpi
194            else
195                echo "You used -parallel" $parallel
196            fi ;;
197        spirit*)
198            fcm_arch=ifort_MESOIPSL;;
199        ciclad*|climserv*|loholt*|camelot*)
200            fcm_arch=ifort_CICLAD;;
201        *)
202            echo Current host is not known. You must use option -arch to specify which architecuture files to use.
203            echo Exit now.
204            exit
205    esac
206fi
207
208# Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch.
209# The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement.
210if [ -f ARCH/arch-${fcm_arch}.env ] ; then
211    echo >> $outfile
212    echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components."
213    echo "Note that this new environement might be kept after compilation."
214    echo "If this is the case, source again your personal environment after compilation."
215    echo " Personal module list before sourcing of ARCH/arch.env file:"    >> $outfile 
216    module list   >> $outfile 2>&1
217    svn_version=$(module list -t | grep subversion)
218       
219    # Make a link to this file, to be used also in config.card
220    rm -f ARCH/arch.env
221    ln -s arch-${fcm_arch}.env ARCH/arch.env
222
223    # Source the file
224    source ARCH/arch.env   >> $outfile 2>&1
225    if [ X$svn_version != X ] ; then
226        module load ${svn_version}
227    fi
228    echo >> $outfile
229    echo " New module list after sourcing of ARCH/arch.env file:"    >> $outfile 
230    module list   >> $outfile 2>&1
231fi
232
233
234#### Clean if full_orch
235# If full recompilation of ORCHIDEE then first clean modipsl/lib folder
236if [ X${full_orch} == X"-full" ] ; then
237   rm -f $modipsl/lib/*
238fi
239
240#### 2 Do the compilation
241## 2.1 Compile ioipsl
242cd $modipsl/modeles/IOIPSL
243echo; echo "NOW COMPILE IOIPSL"
244echo >> $outfile ; echo " NOW COMPILE IOIPSL"   >> $outfile 
245
246echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 
247     ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 2>&1
248# Test if compiling succeded
249if [[ $? != 0 ]] ; then
250    echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP"
251    exit
252fi
253
254if [ $compoasis == y ] ; then
255## 2.2 Compile oasis3-mct
256if [ $full_oasis == y ] ; then
257    rm -rf $modipsl/oasis3-mct/BLD
258fi
259cd $modipsl/oasis3-mct/util/make_dir
260echo; echo "NOW COMPILE OASIS3-MCT"
261echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT"   >> $outfile
262cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc
263
264echo make -f TopMakefileOasis3 >> $outfile
265     make -f TopMakefileOasis3 >> $outfile 2>&1
266if [[ $? != 0 ]] ; then
267    echo "THERE IS A PROBLEM IN OASIS COMPILATION - STOP"
268    exit
269fi
270 
271
272else
273echo ; echo No compilation of OASIS
274fi
275
276## 2.3 Compile xios
277cd $modipsl/modeles/XIOS
278echo; echo "NOW COMPILE XIOS"
279echo >> $outfile ; echo " NOW COMPILE XIOS"   >> $outfile 
280if [ $compoasis == y ] ; then
281argoasis="--use_oasis oasis3_mct "
282else
283argoasis=" "
284fi
285echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 
286     ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 2>&1
287# Test if compiling succeded
288if [[ $? != 0 ]] ; then
289    echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP"
290    exit
291fi
292# Move executables to modipsl/bin
293if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then
294    mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe
295else
296    echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP"
297    exit
298fi
299
300
301## 2.4 Compile ORCHIDEE
302# Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE.
303# This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie.
304cd $modipsl/modeles
305rm -f ORCHIDEE
306if [ $orchversion == orch22 ] ; then
307    ln -s ORCHIDEE_2_2 ORCHIDEE
308    cd $modipsl/modeles/ORCHIDEE_2_2
309    echo; echo "NOW COMPILE ORCHIDEE_2_2"
310    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2"   >> $outfile 
311else
312    ln -s ORCHIDEE_trunk ORCHIDEE
313    cd $modipsl/modeles/ORCHIDEE_trunk
314    echo; echo "NOW COMPILE ORCHIDEE_trunk v4"
315    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_trunk v4"   >> $outfile 
316fi
317
318# Check if the compilation of ORCHIDEE was previsouly interupted prematured.
319# In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm
320# to ask question and wait for interactivly answer from the user.
321if [ -f build/fcm.bld.lock ] ; then
322    echo >> $outfile
323    echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. "   >> $outfile
324    echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
325    echo "           The file will now be removed. "   >> $outfile
326    echo >> $outfile
327    rm -f build/fcm.bld.lock
328fi
329
330echo    ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch $orchdriver >> $outfile 
331        ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch $orchdriver >> $outfile 2>&1
332# Test if compiling finished
333if [[ $? != 0 ]] ; then
334    echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP"
335    exit
336fi
337
338# Rename exetubles for ORCHIDEE offline driver with suffix version
339cd $modipsl/bin
340if [ -f orchideedriver ] ; then mv orchideedriver orchideedriver.$orchversion ; fi
341if [ -f orchidee_ol ] ; then mv orchidee_ol orchidee_ol.$orchversion ; fi
342
343
344## 2.5 Compile NEMO
345if [ $compnemo == y ] ; then
346    nemo_root=$modipsl/modeles/NEMO
347    cfg_ref=ORCA2_ICE_PISCES
348    cfg_wrk=ORCA_ICE_TRC
349    addkeys="key_oasis3 key_top key_si3 key_isf"
350    delkeys=""
351   
352    if [ ${nemotop} == n ] ; then
353        cfg_wrk=ORCA_ICE
354        delkeys="key_top"
355    fi
356   
357    if [ ${nemotop} == n ] ; then
358        echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"
359        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"   >> $outfile
360    else
361        echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"
362        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"   >> $outfile
363    fi
364   
365    echo >> $outfile ; echo cd $nemo_root  >> $outfile
366    echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.   >> $outfile
367    echo >> $outfile
368   
369    cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.
370   
371    # creation of config
372    echo >> $outfile ; echo cd $nemo_root  >> $outfile
373    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys"  del_key "$delkeys"   >> $outfile
374    echo >> $outfile
375    cd $nemo_root
376    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0  add_key "$addkeys"  del_key "$delkeys"  >> $outfile 2>&1
377   
378   
379    # Copy of specfic source files
380    echo >> $outfile ; echo cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.   >> $outfile
381    echo >> $outfile
382    cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.
383   
384   
385    if [ $full_nemo == y ] ; then
386        # To make a full compilation, first make a clean to remove all files produced during previous compilation
387        echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean   >> $outfile
388        echo >> $outfile
389        ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean  >> $outfile 2>&1
390    fi
391    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile
392    echo >> $outfile
393    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile 2>&1
394   
395    echo >> $outfile
396    echo "Move nemo executable to modipsl/bin" >> $outfile
397    echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin   >> $outfile
398    ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin  >> $outfile
399    echo >> $outfile
400   
401    if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then
402        mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe
403    else
404        echo "ERROR nemo.exe executable does not exist."
405        echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP"
406        exit
407    fi
408   
409else
410    echo ; echo No compilation of NEMO
411fi
412
413##2.6  Compile INCA
414if [ $compinca == y ] ; then
415    cd $modipsl/modeles/INCA
416   
417    echo; echo "NOW COMPILE INCA ${optchimie}"
418    echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}"   >> $outfile 
419   
420    echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch}  -arch_path $arch_path $full_inca  >> $outfile
421    ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp  -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile 2>&1
422   
423    # Test if compiling finished
424    if [[ $? != 0 ]] ; then
425        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
426        echo "ALL INFORMATION IN FILE $outfile"
427        exit
428    fi
429   
430    echo "Move inca.dat modipsl/bin"
431    if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ;  then 
432        mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ;
433    else
434        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
435        echo "ALL INFORMATION IN FILE $outfile"
436        exit   
437    fi
438   
439    echo "Move tracer.def to  modipsl/bin"
440    if [[ -f $modipsl/modeles/INCA/tracer.def ]] ;  then
441        mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ;
442    fi
443   
444else
445    echo ; echo No compilation of INCA
446fi
447
448## 2.7 Compile LMDZ
449cd $modipsl/modeles/LMDZ
450
451
452# Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7 for LMDZ 4515
453# To be remove for newer versions of LMDZ
454cp $mysrc_path/LMDZ/phylmd/*.*90  libf/phylmd/.
455cp $mysrc_path/LMDZ/dyn3d_common/*.*90  libf/dyn3d_common/.
456
457
458# Compile LMDZ as library to couple to DYNAMICO
459if [ $compdyna == y ] ; then
460    echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"
461    echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"   >> $outfile 
462   
463   
464    # Check if the compilation of LMDZ was previsouly interupted prematured.
465    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
466    # to ask question and wait for interactivly answer from the user.
467    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
468        echo >> $outfile
469        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
470        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
471        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
472        echo >> $outfile
473        rm -f libf/grid/dimensions.h
474        rm -f .lock
475    fi
476   
477    # Need to define the proper option for radiative code compilation. By default, we use rrtm
478    case $rad in
479        oldrad) opt_rad="" ;;
480        rrtm)    opt_rad="-rad rrtm" ;;
481        ecrad)  opt_rad="-rad ecrad" ;;
482        *) echo Only oldrad rrtm ecrad for rad option ; exit
483    esac
484   
485   
486    if [ $compinca == y ] ; then
487        arginca="-chimie INCA "
488    else
489        arginca=" "
490    fi
491   
492    if [ $compoasis == y ] ; then
493        argoasis="-c OMCT "
494    else
495        argoasis=" "
496    fi
497
498    echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 
499    ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 2>&1
500   
501   
502    # Test if compiling finished
503    if [[ $? != 0 ]] ; then
504        echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP"
505        exit
506    fi
507fi
508
509
510## 2.8 Compile DYNAMICO
511if [ $compdyna == y ] ; then
512    cd $modipsl/modeles/DYNAMICO
513    echo; echo "NOW COMPILE DYNAMICO "
514    echo >> $outfile ; echo " NOW COMPILE DYNAMICO"   >> $outfile 
515   
516    if [ $compoasis == y ] ; then
517        argoasis="-with_oasis "
518    else
519        argoasis=" "
520    fi
521    if [ $compinca == y ] ; then
522        arginca="-with_inca "
523    else
524        arginca=" "
525    fi
526   
527   
528    echo ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 
529    ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 2>&1
530    # Test if compiling finished
531    if [[ $? != 0 ]] ; then
532        echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP"
533        exit
534    fi
535fi
536   
537## 2.9 Compile interface ICOSA_LMDZ
538if [ $compdyna == y ] ; then
539    cd $modipsl/modeles/ICOSA_LMDZ
540    echo; echo "NOW COMPILE ICOSA_LMDZ "
541    echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ"   >> $outfile 
542   
543    echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 
544    ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 2>&1
545    # Test if compiling finished
546    if [[ $? != 0 ]] ; then
547        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP"
548        exit
549    fi
550    # Move executables to modipsl/bin
551    if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then
552        if [ $compinca == y ] ; then
553            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe
554            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
555            cd  $modipsl/bin
556            rm -f icosa_lmdz_${orchversion}_${optmode}.exe
557            ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe
558        else
559            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe
560        fi
561    else
562        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP"
563        exit
564    fi
565fi
566
567
568## 2.10 Compile LMDZ for regular latlon configuration
569if [ $regular_latlon = y ] ; then
570
571    cd $modipsl/modeles/LMDZ
572    # Compile LMDZ regular lat-lon exectuable
573    echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"
574    echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"   >> $outfile 
575    # Check if the compilation of LMDZ was previsouly interupted prematured.
576    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
577    # to ask question and wait for interactivly answer from the user.
578    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
579        echo >> $outfile
580        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
581        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
582        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
583        echo >> $outfile
584        rm -f libf/grid/dimensions.h
585        rm -f .lock
586    fi
587
588    # Need to define the proper option for radiative code compilation. By default, we use rrtm
589    case $rad in
590        oldrad) opt_rad="" ;;
591        rrtm)    opt_rad="-rad rrtm" ;;
592        ecrad)  opt_rad="-rad ecrad" ;;
593        *) echo Only oldrad rrtm ecrad for rad option ; exit
594    esac
595   
596    if [ $compinca == y ] ; then
597        arginca="-chimie INCA"
598    else
599        arginca=""
600    fi
601   
602    if [ $compoasis == y ] ; then
603        argoasis="-c OMCT"
604    else
605        argoasis=""
606    fi
607    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 
608         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 2>&1
609    # Test if compiling finished
610    if [[ $? != 0 ]] ; then
611        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
612        exit
613    fi
614
615    # Find executable suffix
616    suffix=_${resol_atm}_phylmd
617    suffix=${suffix}_${rad} 
618    if [ $parallel == seq ] || [ $parallel == none ] ; then
619        suffix=${suffix}_seq_orch_inca.e
620    else
621        if [ $compoasis == y ] ; then
622            suffix=${suffix}_para_mem_orch_couple
623        else
624            suffix=${suffix}_para_mem_orch
625        fi
626        if [ $compinca == y ] ; then
627            suffix=${suffix}_inca.e
628        else
629            suffix=${suffix}.e
630        fi
631    fi
632    echo gcm suffix = $suffix
633   
634    # Move executables to modipsl/bin folder
635    echo "Move gcm.e executable to modipsl/bin"
636    if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ;  then
637        if [ $compinca == y ] ; then
638            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e
639            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
640            cd $modipsl/bin
641            rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e
642            ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e
643        else
644            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e
645        fi
646    else
647        echo "ERROR gcm${suffix} executable does not exist." 
648        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
649        exit
650    fi   
651
652    # Find executable suffix
653    suffix=_${resol_atm}_phylmd
654    suffix=${suffix}_${rad} 
655    if [ $parallel == seq ] || [ $parallel == none ] ; then
656        suffix=${suffix}_seq_orch.e
657    else
658        if [ $compoasis == y ] ; then
659            suffix=${suffix}_para_mem_orch_couple.e
660        else
661            suffix=${suffix}_para_mem_orch.e
662        fi
663    fi
664    echo ce0l suffix = $suffix
665
666    # Compile ce0l initialization program for LMDZ regular lat-lon exectuable
667    cd $modipsl/modeles/LMDZ
668    echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"
669    echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"   >> $outfile 
670
671    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 
672         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 2>&1
673    # Test if compiling finished
674    if [[ $? != 0 ]] ; then
675        echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP"
676        exit
677    fi
678   
679 
680    # Move executable ce0l to modipsl/bin folder
681    echo "Move ce0l executable to modipsl/bin"
682    if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ;  then
683        mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e
684    else
685        echo "ERROR ce0l${suffix} executable does not exist." 
686        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
687        exit
688    fi
689fi
690
691echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile
692echo ls -lrt modipsl/bin >> $outfile
693ls -lrt $modipsl/bin >> $outfile
694
695echo; echo "ALL COMPILING FINISHED" ; echo
696echo "Executables are found in modipsl/bin"
697echo "Check that executable names correspond with the name set in config.card before launching the job"
698echo ls -lrt modipsl/bin
699ls -lrt $modipsl/bin
700
701date
702
703exit
704
705
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