| 1 | #!/bin/bash |
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| 2 | # Default options |
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| 3 | # |
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| 4 | # |
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| 5 | # |
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| 6 | date |
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| 7 | #### 1 Set up the compiling options |
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| 8 | #### Define some directories |
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| 9 | submitdir=$( pwd ) |
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| 10 | modipsl=$submitdir/../.. |
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| 11 | arch_path=$submitdir/ARCH |
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| 12 | mysrc_path=$submitdir/SOURCES |
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| 13 | export ROOT=$modipsl/modeles/DYNAMICO |
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| 14 | #### Set default options |
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| 15 | # Activate compilation of LMDZ for regular latlon grid without DYNAMICO |
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| 16 | regular_latlon=no |
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| 17 | # Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=yes |
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| 18 | resol_atm=144x142x79 |
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| 19 | # Coupled with ocean biogeochemistry (y/n) |
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| 20 | nemotop=y |
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| 21 | # Optimization mode |
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| 22 | # optmode=prod/dev/debug |
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| 23 | optmode=prod |
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| 24 | # fcm_arch |
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| 25 | fcm_arch=default |
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| 26 | # Default values to be overritten |
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| 27 | parallel=mpi_omp |
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| 28 | export fcm_arch parallel xios |
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| 29 | full_flag="" |
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| 30 | full_nemo=n |
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| 31 | full_inca="" |
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| 32 | full_xios="" |
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| 33 | full_lmdz="" |
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| 34 | full_orch="" |
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| 35 | full_dyna="" |
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| 36 | # choose radiative code compilation option |
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| 37 | rad=rrtm |
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| 38 | opt_rad="" |
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| 39 | #choose chemistry inca configuration |
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| 40 | optchimie=GES |
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| 41 | |
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| 42 | # subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled. |
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| 43 | subconfig=default |
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| 44 | |
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| 45 | # orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_trunk is compiled. This is used as argument and also in the suffix of the executables. |
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| 46 | orchversion=orch22 |
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| 47 | |
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| 48 | # Default netcdf_lib is used for XIOS but can be change by argument |
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| 49 | netcdf_lib="" |
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| 50 | |
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| 51 | # Output text file for compilation of each component |
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| 52 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M"` |
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| 53 | outfile=$submitdir/out_compile_ipslcm7.$datestr |
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| 54 | echo > $outfile |
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| 55 | echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo |
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| 56 | |
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| 57 | |
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| 58 | rm -f out_compile_ipslcm7 |
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| 59 | ln -s ${outfile} out_compile_ipslcm7 |
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| 60 | |
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| 61 | |
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| 62 | #### Read arguments |
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| 63 | # Loop over all arguments to modify default set up |
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| 64 | while (($# > 0)) ; do |
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| 65 | case $1 in |
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| 66 | "-h") cat <<end_help |
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| 67 | ######################################################################## |
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| 68 | # Usage of the script compile_ipslcm7.sh |
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| 69 | # |
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| 70 | ######################################################################## |
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| 71 | |
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| 72 | ./compile_ipslcm7.sh [Options] |
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| 73 | |
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| 74 | |
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| 75 | Options: [-full] Full recompilation of all components. This option can be added to all other options. |
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| 76 | [-cleannemo] Full recompilation of NEMO component only. |
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| 77 | [-regular_latlon] Activate compilation of LMDZ for regular latlon grid with default resol_atm size in addition to the icosahedric grid. |
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| 78 | [-resol_atm XXXxYYYxZZ] Define which regular grid to compile. |
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| 79 | [-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod. |
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| 80 | [-subconfig X] Set this option if you want to compile a sub-configuration. X can be: ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA or LMDZOR. |
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| 81 | If this option is not set, all extracted components are compiled. |
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| 82 | |
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| 83 | Example 1: Default compilation of IPSLCM7 for resolution LR |
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| 84 | (Resolution atmos: nbp40 ) |
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| 85 | ./compile_ipslcm7.sh |
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| 86 | |
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| 87 | Example 2: Default resolution (LR) compiled in debug mode |
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| 88 | ./compile_ipslcm7.sh -debug |
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| 89 | |
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| 90 | Example 3: Default compilation with full recompilation of all components. No clean is needed. |
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| 91 | ./compile_ipslcm7.sh -full |
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| 92 | |
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| 93 | Example 4: Compilation of LMDZ in regular lat-lon for default dimension 144x142x79. |
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| 94 | ./compile_ipslcm7.sh -regular_latlon |
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| 95 | Activate regular lat-lon compilation and change resolution to 144x142x95 |
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| 96 | ./compile_ipslcm7.sh -resol_atm 144x142x95 |
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| 97 | |
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| 98 | Example 5: Compiltion of ORCHIDEE_trunk version |
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| 99 | Note that for compiling ORCHIDEE trunk you must first have extracted ORCHIDEE_trunk folder in modeles. |
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| 100 | modeles/ORCHIDEE_2_2 folder can be kept at the same time. |
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| 101 | ./compile_ipslcm7.sh -orch4 |
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| 102 | ./compile_ipslcm7.sh -regular_latlon 144x142x79 -orch4 |
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| 103 | |
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| 104 | |
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| 105 | Example 6: compilation of a specific chemistry for INCA (default is GES) |
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| 106 | ./compile_ipslcm7.sh -chimie NMHC_AER_S |
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| 107 | |
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| 108 | end_help |
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| 109 | exit;; |
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| 110 | |
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| 111 | "-parallel") parallel=$2 ; shift ; shift ;; |
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| 112 | "-arch") fcm_arch="$2" ; shift ; shift ;; |
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| 113 | "-debug") optmode=debug ; shift ;; |
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| 114 | "-dev") optmode=dev ; shift ;; |
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| 115 | "-prod") optmode=prod ; shift ;; |
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| 116 | "-regular_latlon") regular_latlon=yes ; shift ;; |
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| 117 | "-resol_atm") regular_latlon=yes ; resol_atm=$2 ; shift ; shift ;; |
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| 118 | "-subconfig") subconfig=$2 ; shift ; shift ;; |
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| 119 | "-full") full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; shift ;; |
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| 120 | "-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full |
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| 121 | "-full_lmdz") full_lmdz="-full" ; shift ;; |
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| 122 | "-full_orch") full_orch="-full" ; shift ;; |
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| 123 | "-full_nemo") full_nemo=y ; shift ;; |
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| 124 | "-full_inca") full_inca="-clean"; shift ;; |
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| 125 | "-full_dyna") full_dyna="-full" ; shift ;; |
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| 126 | "-cleannemo") full_nemo=y ; shift ;; |
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| 127 | "-rad") rad=$2; shift ; shift ;; |
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| 128 | "-orch22") orchversion="orch22"; shift ;; |
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| 129 | "-orch4") orchversion="orch4"; shift ;; |
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| 130 | "-chimie") optchimie=$2; shift ; shift;; |
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| 131 | *) echo "unknown option "$1" , exiting..." ; exit |
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| 132 | esac |
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| 133 | done |
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| 134 | |
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| 135 | |
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| 136 | # Define which sub-configuration to compile. By default all extracted source components are compiled. |
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| 137 | source define_config.sh |
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| 138 | |
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| 139 | echo "Following options are set in current compiling:" >> $outfile |
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| 140 | echo " regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile |
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| 141 | echo " resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile |
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| 142 | echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile |
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| 143 | echo " full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna" >> $outfile |
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| 144 | echo " compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile |
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| 145 | echo >> $outfile |
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| 146 | |
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| 147 | ### Verification of argument |
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| 148 | # Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface. |
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| 149 | if [ $orchversion == orch22 ] ; then |
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| 150 | argorch=orchidee2.1 |
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| 151 | elif [ $orchversion == orch4 ] ; then |
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| 152 | argorch=orchideetrunk |
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| 153 | else |
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| 154 | echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now" |
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| 155 | fi |
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| 156 | |
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| 157 | ### Read host dependent default values |
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| 158 | ### These variables will not be changed if they were set as argument |
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| 159 | ###./host.sh $host |
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| 160 | # Later : Following lines should be set in host.sh file |
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| 161 | # begin host.sh |
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| 162 | if [ $fcm_arch == default ] ; then |
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| 163 | # Find out current host and source specific paths and commands for the host |
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| 164 | case $( hostname -s ) in |
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| 165 | jean-zay*) |
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| 166 | if [[ $( hostname -s ) != *"pp"* ]] ; then |
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| 167 | echo "Warning! You MUST compile on jean-zay-pp." |
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| 168 | echo "EXIT" |
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| 169 | exit |
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| 170 | else |
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| 171 | fcm_arch=X64_JEANZAY |
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| 172 | fi ;; |
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| 173 | irene170|irene171|irene190|irene191|irene192|irene193) |
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| 174 | fcm_arch=X64_IRENE;; |
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| 175 | irene172|irene173|irene194|irene195) |
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| 176 | fcm_arch=X64_IRENE-AMD;; |
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| 177 | asterix*|obelix*) |
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| 178 | fcm_arch=ifort_LSCE |
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| 179 | if [ "${parallel}" == "mpi_omp" ] ; then |
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| 180 | echo "Warning!! Currently at Obelix hybrid mode is not possible." |
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| 181 | echo " Option -parallel mpi_omp is now changed to -parallel mpi" |
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| 182 | echo "" |
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| 183 | parallel=mpi |
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| 184 | else |
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| 185 | echo "You used -parallel" $parallel |
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| 186 | fi ;; |
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| 187 | spirit*) |
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| 188 | fcm_arch=ifort_MESOIPSL;; |
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| 189 | ciclad*|climserv*|loholt*|camelot*) |
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| 190 | fcm_arch=ifort_CICLAD;; |
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| 191 | *) |
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| 192 | echo Current host is not known. You must use option -arch to specify which architecuture files to use. |
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| 193 | echo Exit now. |
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| 194 | exit |
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| 195 | esac |
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| 196 | fi |
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| 197 | |
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| 198 | # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. |
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| 199 | # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. |
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| 200 | if [ -f ARCH/arch-${fcm_arch}.env ] ; then |
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| 201 | echo >> $outfile |
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| 202 | echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components." |
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| 203 | echo "Note that this new environement might be kept after compilation." |
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| 204 | echo "If this is the case, source again your personal environment after compilation." |
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| 205 | echo " Personal module list before sourcing of ARCH/arch.env file:" >> $outfile |
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| 206 | module list >> $outfile 2>&1 |
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| 207 | svn_version=$(module list -t | grep subversion) |
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| 208 | |
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| 209 | # Make a link to this file, to be used also in config.card |
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| 210 | rm -f ARCH/arch.env |
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| 211 | ln -s arch-${fcm_arch}.env ARCH/arch.env |
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| 212 | |
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| 213 | # Source the file |
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| 214 | source ARCH/arch.env >> $outfile 2>&1 |
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| 215 | if [ X$svn_version != X ] ; then |
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| 216 | module load ${svn_version} |
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| 217 | fi |
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| 218 | echo >> $outfile |
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| 219 | echo " New module list after sourcing of ARCH/arch.env file:" >> $outfile |
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| 220 | module list >> $outfile 2>&1 |
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| 221 | fi |
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| 222 | |
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| 223 | |
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| 224 | #### Clean if full_orch |
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| 225 | # If full recompilation of ORCHIDEE then first clean modipsl/lib folder |
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| 226 | if [ X${full_orch} == X"-full" ] ; then |
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| 227 | rm -f $modipsl/lib/* |
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| 228 | fi |
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| 229 | |
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| 230 | #### 2 Do the compilation |
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| 231 | ## 2.1 Compile ioipsl |
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| 232 | cd $modipsl/modeles/IOIPSL |
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| 233 | echo; echo "NOW COMPILE IOIPSL" |
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| 234 | echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile |
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| 235 | |
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| 236 | echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile |
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| 237 | ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 |
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| 238 | # Test if compiling succeded |
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| 239 | if [[ $? != 0 ]] ; then |
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| 240 | echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" |
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| 241 | exit |
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| 242 | fi |
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| 243 | |
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| 244 | if [ $compoasis == y ] ; then |
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| 245 | ## 2.2 Compile oasis3-mct |
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| 246 | cd $modipsl/oasis3-mct/util/make_dir |
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| 247 | echo; echo "NOW COMPILE OASIS3-MCT" |
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| 248 | echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT" >> $outfile |
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| 249 | cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc |
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| 250 | |
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| 251 | echo make -f TopMakefileOasis3 >> $outfile |
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| 252 | make -f TopMakefileOasis3 >> $outfile 2>&1 |
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| 253 | |
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| 254 | else |
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| 255 | echo ; echo No compilation of OASIS |
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| 256 | fi |
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| 257 | |
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| 258 | ## 2.3 Compile xios |
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| 259 | cd $modipsl/modeles/XIOS |
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| 260 | echo; echo "NOW COMPILE XIOS" |
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| 261 | echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile |
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| 262 | if [ $compoasis == y ] ; then |
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| 263 | argoasis="--use_oasis oasis3_mct " |
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| 264 | else |
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| 265 | argoasis=" " |
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| 266 | fi |
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| 267 | echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile |
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| 268 | ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1 |
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| 269 | # Test if compiling succeded |
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| 270 | if [[ $? != 0 ]] ; then |
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| 271 | echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" |
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| 272 | exit |
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| 273 | fi |
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| 274 | # Move executables to modipsl/bin |
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| 275 | if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then |
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| 276 | mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe |
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| 277 | else |
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| 278 | echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" |
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| 279 | exit |
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| 280 | fi |
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| 281 | |
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| 282 | |
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| 283 | ## 2.4 Compile ORCHIDEE |
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| 284 | # Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE. |
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| 285 | # This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie. |
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| 286 | cd $modipsl/modeles |
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| 287 | rm -f ORCHIDEE |
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| 288 | if [ $orchversion == orch22 ] ; then |
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| 289 | ln -s ORCHIDEE_2_2 ORCHIDEE |
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| 290 | cd $modipsl/modeles/ORCHIDEE_2_2 |
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| 291 | echo; echo "NOW COMPILE ORCHIDEE_2_2" |
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| 292 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2" >> $outfile |
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| 293 | else |
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| 294 | ln -s ORCHIDEE_trunk ORCHIDEE |
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| 295 | cd $modipsl/modeles/ORCHIDEE_trunk |
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| 296 | echo; echo "NOW COMPILE ORCHIDEE_trunk v4" |
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| 297 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_trunk v4" >> $outfile |
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| 298 | fi |
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| 299 | |
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| 300 | # Check if the compilation of ORCHIDEE was previsouly interupted prematured. |
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| 301 | # In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm |
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| 302 | # to ask question and wait for interactivly answer from the user. |
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| 303 | if [ -f build/fcm.bld.lock ] ; then |
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| 304 | echo >> $outfile |
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| 305 | echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile |
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| 306 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
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| 307 | echo " The file will now be removed. " >> $outfile |
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| 308 | echo >> $outfile |
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| 309 | rm -f build/fcm.bld.lock |
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| 310 | fi |
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| 311 | |
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| 312 | echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile |
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| 313 | ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile 2>&1 |
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| 314 | # Test if compiling finished |
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| 315 | if [[ $? != 0 ]] ; then |
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| 316 | echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" |
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| 317 | exit |
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| 318 | fi |
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| 319 | |
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| 320 | # Rename exetubles for ORCHIDEE offline driver with suffix version |
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| 321 | cd $modipsl/bin |
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| 322 | if [ -f orchideedriver ] ; then mv orchideedriver orchideedriver.$orchversion ; fi |
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| 323 | if [ -f orchidee_ol ] ; then mv orchidee_ol orchidee_ol.$orchversion ; fi |
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| 324 | |
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| 325 | |
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| 326 | ## 2.5 Compile NEMO |
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| 327 | if [ $compnemo == y ] ; then |
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| 328 | nemo_root=$modipsl/modeles/NEMO |
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| 329 | cfg_ref=ORCA2_ICE_PISCES |
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| 330 | cfg_wrk=ORCA_ICE_TRC |
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| 331 | addkeys="key_oasis3 key_top key_si3 key_isf" |
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| 332 | delkeys="" |
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| 333 | |
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| 334 | if [ ${nemotop} == n ] ; then |
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| 335 | cfg_wrk=ORCA_ICE |
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| 336 | delkeys="key_top" |
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| 337 | fi |
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| 338 | |
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| 339 | if [ ${nemotop} == n ] ; then |
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| 340 | echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP" |
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| 341 | echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP" >> $outfile |
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| 342 | else |
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| 343 | echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP" |
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| 344 | echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP" >> $outfile |
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| 345 | fi |
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| 346 | |
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| 347 | echo >> $outfile ; echo cd $nemo_root >> $outfile |
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| 348 | echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/. >> $outfile |
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| 349 | echo >> $outfile |
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| 350 | |
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| 351 | cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/. |
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| 352 | |
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| 353 | # creation of config |
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| 354 | echo >> $outfile ; echo cd $nemo_root >> $outfile |
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| 355 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile |
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| 356 | echo >> $outfile |
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| 357 | cd $nemo_root |
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| 358 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile 2>&1 |
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| 359 | |
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| 360 | |
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| 361 | # Copy of specfic source files |
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| 362 | echo >> $outfile ; echo cp $mysrc_path/NEMO/*.*90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/. >> $outfile |
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| 363 | echo >> $outfile |
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| 364 | cp $mysrc_path/NEMO/*.*90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/. |
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| 365 | |
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| 366 | |
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| 367 | if [ $full_nemo == y ] ; then |
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| 368 | # To make a full compilation, first make a clean to remove all files produced during previous compilation |
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| 369 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile |
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| 370 | echo >> $outfile |
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| 371 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile 2>&1 |
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| 372 | fi |
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| 373 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile |
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| 374 | echo >> $outfile |
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| 375 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile 2>&1 |
|---|
| 376 | |
|---|
| 377 | echo >> $outfile |
|---|
| 378 | echo "Move nemo executable to modipsl/bin" >> $outfile |
|---|
| 379 | echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile |
|---|
| 380 | ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile |
|---|
| 381 | echo >> $outfile |
|---|
| 382 | |
|---|
| 383 | if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then |
|---|
| 384 | mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe |
|---|
| 385 | else |
|---|
| 386 | echo "ERROR nemo.exe executable does not exist." |
|---|
| 387 | echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP" |
|---|
| 388 | exit |
|---|
| 389 | fi |
|---|
| 390 | |
|---|
| 391 | else |
|---|
| 392 | echo ; echo No compilation of NEMO |
|---|
| 393 | fi |
|---|
| 394 | |
|---|
| 395 | ##2.6 Compile INCA |
|---|
| 396 | if [ $compinca == y ] ; then |
|---|
| 397 | cd $modipsl/modeles/INCA |
|---|
| 398 | |
|---|
| 399 | echo; echo "NOW COMPILE INCA ${optchimie}" |
|---|
| 400 | echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}" >> $outfile |
|---|
| 401 | |
|---|
| 402 | echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag >> $outfile |
|---|
| 403 | ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag >> $outfile 2>&1 |
|---|
| 404 | |
|---|
| 405 | # Test if compiling finished |
|---|
| 406 | if [[ $? != 0 ]] ; then |
|---|
| 407 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
|---|
| 408 | echo "ALL INFORMATION IN FILE $outfile" |
|---|
| 409 | exit |
|---|
| 410 | fi |
|---|
| 411 | |
|---|
| 412 | echo "Move inca.dat modipsl/bin" |
|---|
| 413 | if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ; then |
|---|
| 414 | mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ; |
|---|
| 415 | else |
|---|
| 416 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
|---|
| 417 | echo "ALL INFORMATION IN FILE $outfile" |
|---|
| 418 | exit |
|---|
| 419 | fi |
|---|
| 420 | |
|---|
| 421 | echo "Move tracer.def to modipsl/bin" |
|---|
| 422 | if [[ -f $modipsl/modeles/INCA/tracer.def ]] ; then |
|---|
| 423 | mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ; |
|---|
| 424 | fi |
|---|
| 425 | |
|---|
| 426 | else |
|---|
| 427 | echo ; echo No compilation of INCA |
|---|
| 428 | fi |
|---|
| 429 | |
|---|
| 430 | ## 2.7 Compile LMDZ |
|---|
| 431 | cd $modipsl/modeles/LMDZ |
|---|
| 432 | # Compile LMDZ as library to couple to DYNAMICO |
|---|
| 433 | if [ $compdyna == y ] ; then |
|---|
| 434 | echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" |
|---|
| 435 | echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" >> $outfile |
|---|
| 436 | |
|---|
| 437 | # Retrieve the final svn release number, needed for radiative code suffix of executable |
|---|
| 438 | lmdzsvn=`svnversion . | egrep -o "[0-9]+" | awk 'NR==1'` |
|---|
| 439 | # Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7 |
|---|
| 440 | cp $mysrc_path/LMDZ/phylmd/*.*90 libf/phylmd/. |
|---|
| 441 | cp $mysrc_path/LMDZ/dyn3d_common/*.*90 libf/dyn3d_common/. |
|---|
| 442 | |
|---|
| 443 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
|---|
| 444 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
|---|
| 445 | # to ask question and wait for interactivly answer from the user. |
|---|
| 446 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
|---|
| 447 | echo >> $outfile |
|---|
| 448 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
|---|
| 449 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
|---|
| 450 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
|---|
| 451 | echo >> $outfile |
|---|
| 452 | rm -f libf/grid/dimensions.h |
|---|
| 453 | rm -f .lock |
|---|
| 454 | fi |
|---|
| 455 | |
|---|
| 456 | # Need to define the proper option for radiative code compilation. By default, we use rrtm |
|---|
| 457 | case $rad in |
|---|
| 458 | oldrad) opt_rad="" ;; |
|---|
| 459 | rrtm) if [ $lmdzsvn -le 4185 ] ; then opt_rad="-rrtm true" ; else opt_rad="-rad rrtm" ; fi ;; |
|---|
| 460 | ecrad) opt_rad="-rad ecrad" ;; |
|---|
| 461 | *) echo Only oldrad rrtm ecrad for rad option ; exit |
|---|
| 462 | esac |
|---|
| 463 | |
|---|
| 464 | if [ $lmdzsvn -le 4185 -a $rad = "ecrad" ] ; then echo "ecrad only available for LMDZ rev starting with 4186 " ; exit ; fi |
|---|
| 465 | |
|---|
| 466 | if [ $compinca == y ] ; then |
|---|
| 467 | arginca="-chimie INCA " |
|---|
| 468 | else |
|---|
| 469 | arginca=" " |
|---|
| 470 | fi |
|---|
| 471 | |
|---|
| 472 | if [ $compoasis == y ] ; then |
|---|
| 473 | argoasis="-c OMCT " |
|---|
| 474 | else |
|---|
| 475 | argoasis=" " |
|---|
| 476 | fi |
|---|
| 477 | |
|---|
| 478 | echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile |
|---|
| 479 | ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile 2>&1 |
|---|
| 480 | |
|---|
| 481 | |
|---|
| 482 | # Test if compiling finished |
|---|
| 483 | if [[ $? != 0 ]] ; then |
|---|
| 484 | echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP" |
|---|
| 485 | exit |
|---|
| 486 | fi |
|---|
| 487 | fi |
|---|
| 488 | |
|---|
| 489 | |
|---|
| 490 | ## 2.8 Compile DYNAMICO |
|---|
| 491 | if [ $compdyna == y ] ; then |
|---|
| 492 | cd $modipsl/modeles/DYNAMICO |
|---|
| 493 | echo; echo "NOW COMPILE DYNAMICO " |
|---|
| 494 | echo >> $outfile ; echo " NOW COMPILE DYNAMICO" >> $outfile |
|---|
| 495 | |
|---|
| 496 | if [ $compoasis == y ] ; then |
|---|
| 497 | argoasis="-with_oasis " |
|---|
| 498 | else |
|---|
| 499 | argoasis=" " |
|---|
| 500 | fi |
|---|
| 501 | if [ $compinca == y ] ; then |
|---|
| 502 | arginca="-with_inca " |
|---|
| 503 | else |
|---|
| 504 | arginca=" " |
|---|
| 505 | fi |
|---|
| 506 | |
|---|
| 507 | |
|---|
| 508 | echo ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile |
|---|
| 509 | ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile 2>&1 |
|---|
| 510 | # Test if compiling finished |
|---|
| 511 | if [[ $? != 0 ]] ; then |
|---|
| 512 | echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP" |
|---|
| 513 | exit |
|---|
| 514 | fi |
|---|
| 515 | fi |
|---|
| 516 | |
|---|
| 517 | ## 2.9 Compile interface ICOSA_LMDZ |
|---|
| 518 | if [ $compdyna == y ] ; then |
|---|
| 519 | cd $modipsl/modeles/ICOSA_LMDZ |
|---|
| 520 | echo; echo "NOW COMPILE ICOSA_LMDZ " |
|---|
| 521 | echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ" >> $outfile |
|---|
| 522 | |
|---|
| 523 | echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile |
|---|
| 524 | ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile 2>&1 |
|---|
| 525 | # Test if compiling finished |
|---|
| 526 | if [[ $? != 0 ]] ; then |
|---|
| 527 | echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP" |
|---|
| 528 | exit |
|---|
| 529 | fi |
|---|
| 530 | # Move executables to modipsl/bin |
|---|
| 531 | if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then |
|---|
| 532 | if [ $compinca == y ] ; then |
|---|
| 533 | mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe |
|---|
| 534 | # Create link to be use by IPSLCM and LMDZOR without any change in the executable name |
|---|
| 535 | cd $modipsl/bin |
|---|
| 536 | rm -f icosa_lmdz_${orchversion}_${optmode}.exe |
|---|
| 537 | ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe |
|---|
| 538 | else |
|---|
| 539 | mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe |
|---|
| 540 | fi |
|---|
| 541 | else |
|---|
| 542 | echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP" |
|---|
| 543 | exit |
|---|
| 544 | fi |
|---|
| 545 | fi |
|---|
| 546 | |
|---|
| 547 | |
|---|
| 548 | ## 2.10 Compile LMDZ for regular latlon configuration |
|---|
| 549 | if [ $regular_latlon = yes ] ; then |
|---|
| 550 | |
|---|
| 551 | cd $modipsl/modeles/LMDZ |
|---|
| 552 | # Compile LMDZ regular lat-lon exectuable |
|---|
| 553 | echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" |
|---|
| 554 | echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" >> $outfile |
|---|
| 555 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
|---|
| 556 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
|---|
| 557 | # to ask question and wait for interactivly answer from the user. |
|---|
| 558 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
|---|
| 559 | echo >> $outfile |
|---|
| 560 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
|---|
| 561 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
|---|
| 562 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
|---|
| 563 | echo >> $outfile |
|---|
| 564 | rm -f libf/grid/dimensions.h |
|---|
| 565 | rm -f .lock |
|---|
| 566 | fi |
|---|
| 567 | |
|---|
| 568 | if [ $compinca == y ] ; then |
|---|
| 569 | arginca="-chimie INCA" |
|---|
| 570 | else |
|---|
| 571 | arginca="" |
|---|
| 572 | fi |
|---|
| 573 | |
|---|
| 574 | if [ $compoasis == y ] ; then |
|---|
| 575 | argoasis="-c OMCT" |
|---|
| 576 | else |
|---|
| 577 | argoasis="" |
|---|
| 578 | fi |
|---|
| 579 | echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile |
|---|
| 580 | ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile 2>&1 |
|---|
| 581 | # Test if compiling finished |
|---|
| 582 | if [[ $? != 0 ]] ; then |
|---|
| 583 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 584 | exit |
|---|
| 585 | fi |
|---|
| 586 | |
|---|
| 587 | # Find executable suffix |
|---|
| 588 | suffix=_${resol_atm}_phylmd |
|---|
| 589 | if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi |
|---|
| 590 | if [ $parallel == seq ] || [ $parallel == none ] ; then |
|---|
| 591 | suffix=${suffix}_seq_orch_inca.e |
|---|
| 592 | else |
|---|
| 593 | if [ $compoasis == y ] ; then |
|---|
| 594 | suffix=${suffix}_para_mem_orch_couple |
|---|
| 595 | else |
|---|
| 596 | suffix=${suffix}_para_mem_orch |
|---|
| 597 | fi |
|---|
| 598 | if [ $compinca == y ] ; then |
|---|
| 599 | suffix=${suffix}_inca.e |
|---|
| 600 | else |
|---|
| 601 | suffix=${suffix}.e |
|---|
| 602 | fi |
|---|
| 603 | fi |
|---|
| 604 | echo gcm suffix = $suffix |
|---|
| 605 | |
|---|
| 606 | # Move executables to modipsl/bin folder |
|---|
| 607 | echo "Move gcm.e executable to modipsl/bin" |
|---|
| 608 | if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ; then |
|---|
| 609 | if [ $compinca == y ] ; then |
|---|
| 610 | mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e |
|---|
| 611 | # Create link to be use by IPSLCM and LMDZOR without any change in the executable name |
|---|
| 612 | cd $modipsl/bin |
|---|
| 613 | rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e |
|---|
| 614 | ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e |
|---|
| 615 | else |
|---|
| 616 | mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e |
|---|
| 617 | fi |
|---|
| 618 | else |
|---|
| 619 | echo "ERROR gcm${suffix} executable does not exist." |
|---|
| 620 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 621 | exit |
|---|
| 622 | fi |
|---|
| 623 | |
|---|
| 624 | # Find executable suffix |
|---|
| 625 | suffix=_${resol_atm}_phylmd |
|---|
| 626 | if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi |
|---|
| 627 | if [ $parallel == seq ] || [ $parallel == none ] ; then |
|---|
| 628 | suffix=${suffix}_seq_orch.e |
|---|
| 629 | else |
|---|
| 630 | if [ $compoasis == y ] ; then |
|---|
| 631 | suffix=${suffix}_para_mem_orch_couple.e |
|---|
| 632 | else |
|---|
| 633 | suffix=${suffix}_para_mem_orch.e |
|---|
| 634 | fi |
|---|
| 635 | fi |
|---|
| 636 | echo ce0l suffix = $suffix |
|---|
| 637 | |
|---|
| 638 | # Compile ce0l initialization program for LMDZ regular lat-lon exectuable |
|---|
| 639 | cd $modipsl/modeles/LMDZ |
|---|
| 640 | echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" |
|---|
| 641 | echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" >> $outfile |
|---|
| 642 | |
|---|
| 643 | echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile |
|---|
| 644 | ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile 2>&1 |
|---|
| 645 | # Test if compiling finished |
|---|
| 646 | if [[ $? != 0 ]] ; then |
|---|
| 647 | echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" |
|---|
| 648 | exit |
|---|
| 649 | fi |
|---|
| 650 | |
|---|
| 651 | |
|---|
| 652 | # Move executable ce0l to modipsl/bin folder |
|---|
| 653 | echo "Move ce0l executable to modipsl/bin" |
|---|
| 654 | if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ; then |
|---|
| 655 | mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e |
|---|
| 656 | else |
|---|
| 657 | echo "ERROR ce0l${suffix} executable does not exist." |
|---|
| 658 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 659 | exit |
|---|
| 660 | fi |
|---|
| 661 | fi |
|---|
| 662 | |
|---|
| 663 | echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile |
|---|
| 664 | echo ls -lrt modipsl/bin >> $outfile |
|---|
| 665 | ls -lrt $modipsl/bin >> $outfile |
|---|
| 666 | |
|---|
| 667 | echo; echo "ALL COMPILING FINISHED" ; echo |
|---|
| 668 | echo "Executables are found in modipsl/bin" |
|---|
| 669 | echo "Check that executable names correspond with the name set in config.card before launching the job" |
|---|
| 670 | echo ls -lrt modipsl/bin |
|---|
| 671 | ls -lrt $modipsl/bin |
|---|
| 672 | |
|---|
| 673 | date |
|---|
| 674 | |
|---|
| 675 | exit |
|---|
| 676 | |
|---|
| 677 | |
|---|
